Query psy9903
Match_columns 204
No_of_seqs 204 out of 1287
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 22:36:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 5E-39 1.1E-43 305.9 8.3 154 1-158 534-691 (719)
2 PF03098 An_peroxidase: Animal 100.0 2.2E-36 4.8E-41 281.4 0.3 148 2-154 375-525 (530)
3 PLN02283 alpha-dioxygenase 100.0 4.4E-32 9.5E-37 255.5 7.6 112 20-134 469-581 (633)
4 KOG2408|consensus 99.9 9.2E-25 2E-29 208.5 3.1 155 33-204 443-606 (719)
5 PF03098 An_peroxidase: Animal 99.7 5.8E-20 1.3E-24 171.4 -5.9 151 39-204 289-447 (530)
6 PLN02283 alpha-dioxygenase 99.7 2.1E-17 4.6E-22 156.3 1.4 55 148-204 468-522 (633)
7 TIGR00165 S18 ribosomal protei 27.1 32 0.00069 23.8 0.9 19 23-41 50-68 (70)
8 PF09133 SANTA: SANTA (SANT As 26.7 33 0.00071 24.8 1.0 33 154-188 57-89 (93)
9 PRK00391 rpsR 30S ribosomal pr 23.7 36 0.00079 24.0 0.7 19 23-41 59-77 (79)
10 PRK13401 30S ribosomal protein 21.2 42 0.00091 23.9 0.6 20 23-42 58-77 (82)
No 1
>KOG2408|consensus
Probab=100.00 E-value=5e-39 Score=305.92 Aligned_cols=154 Identities=42% Similarity=0.817 Sum_probs=138.0
Q ss_pred CCchhhHhhccccCCCCCCcc-ccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcCCCc
Q psy9903 1 METDGLTQHLFEQVGSKVPYG-LDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDD 79 (204)
Q Consensus 1 ~~~~~~~~~lf~~~~~~~~~g-~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~~~d 79 (204)
+++.+++++||...+. .+ +||+|+|||||||||||+||+||++||++++.+|++|+..+.++++++|+.+|++++|
T Consensus 534 ~~~~~i~~~lf~~~~~---~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~dd 610 (719)
T KOG2408|consen 534 LLNGEITERLFVKTDE---DGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDD 610 (719)
T ss_pred hcCHHHHHHHhhhcCc---ccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchh
Confidence 3789999999998877 55 9999999999999999999999999999999999999998888899999999999999
Q ss_pred ccccccccCCccCCCCCCCcchHHhHHHHHhhhhcCCeeeeecCCCcccccccccc--chhhhhhcCCCCCCcchhhhh-
Q psy9903 80 VDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKGL--TQHLFEQVGSKVPYGLDLVSL- 156 (204)
Q Consensus 80 iDL~~G~l~E~~~~g~~vgpt~~~ii~~qf~rl~~gDRf~~~~~~~p~~ft~~q~~--~~~Lf~~~~~~~~~g~d~~~~- 156 (204)
||||+|+++|++++|+.+|||+.|||++||.|+|+|||||||+ .+|+.||++|+. +...++++.|.+..++.-+.-
T Consensus 611 iDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~~~~~~ 689 (719)
T KOG2408|consen 611 IDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-FNPGVFTPEQLEEIRKVSLARIICDNGTKITKVSRF 689 (719)
T ss_pred hcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecC-CCCCccCHHHHHHHHHhhchheeecCCccccccccc
Confidence 9999999999999999999999999999999999999999996 779999999984 455677777764355554444
Q ss_pred hh
Q psy9903 157 NI 158 (204)
Q Consensus 157 ~i 158 (204)
|+
T Consensus 690 ~~ 691 (719)
T KOG2408|consen 690 DV 691 (719)
T ss_pred CC
Confidence 55
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=2.2e-36 Score=281.39 Aligned_cols=148 Identities=43% Similarity=0.866 Sum_probs=121.1
Q ss_pred CchhhHhhccccCCCCCCccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCCC-hHHHHHHHHHhcCCCcc
Q psy9903 2 ETDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVD-DESLKLLSKIYKSVDDV 80 (204)
Q Consensus 2 ~~~~~~~~lf~~~~~~~~~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~-~~~i~~l~~lY~~~~di 80 (204)
++++|++++|++.+.. .++||+++|||||||||||+||+||+.||++++++|++++..++ +++++.|+++|++++||
T Consensus 375 ~~~~l~~~lf~~~~~~--~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddv 452 (530)
T PF03098_consen 375 LVDDLRNHLFGPRNVP--GSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDDV 452 (530)
T ss_dssp SHHHHHTSEESTTSSS--EEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGGS
T ss_pred hhhHhhcccccccCCc--chhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhcc
Confidence 6789999999888763 34699999999999999999999999999999999999966444 56669999999999999
Q ss_pred cccccccCCccCCCCCCCcchHHhHHHHHhhhhcCCeeeeecCCCccccccccc--cchhhhhhcCCCCCCcchhh
Q psy9903 81 DMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKG--LTQHLFEQVGSKVPYGLDLV 154 (204)
Q Consensus 81 DL~~G~l~E~~~~g~~vgpt~~~ii~~qf~rl~~gDRf~~~~~~~p~~ft~~q~--~~~~Lf~~~~~~~~~g~d~~ 154 (204)
|||+|+++|.+++|+.+|||+.|||++||.++++||||||| +|+.||+.|+ +++..++++.|.+..+++.+
T Consensus 453 DL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~ye---n~~~ft~~ql~~i~~~tla~iic~n~~~~~~i 525 (530)
T PF03098_consen 453 DLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYE---NPGSFTPEQLEEIRKTTLARIICDNTDDITRI 525 (530)
T ss_dssp BHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTT---SCTTCTHHHHHHHTTT-HHHHHHHHSTS-SEE
T ss_pred cccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCccccc---CcCcCCHHHHHHHHHCCHHHHHHhcCCccccC
Confidence 99999999999999999999999999999999999999999 7799999886 55556666555433344433
No 3
>PLN02283 alpha-dioxygenase
Probab=99.97 E-value=4.4e-32 Score=255.48 Aligned_cols=112 Identities=23% Similarity=0.431 Sum_probs=106.4
Q ss_pred ccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhc-CCCcccccccccCCccCCCCCCC
Q psy9903 20 YGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK-SVDDVDMYTGGLSEKPLEGGMLG 98 (204)
Q Consensus 20 ~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~-~~~diDL~~G~l~E~~~~g~~vg 98 (204)
.|+||+|+|||||||||||+||+||+.||++++++|+|++. ++++++.|+++|+ ++++||||+|+++|++++|+.+|
T Consensus 469 ~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~--d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG 546 (633)
T PLN02283 469 DHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAIS 546 (633)
T ss_pred ccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcC
Confidence 79999999999999999999999999999999999999997 7899999999998 79999999999999999999999
Q ss_pred cchHHhHHHHHhhhhcCCeeeeecCCCccccccccc
Q psy9903 99 PTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKG 134 (204)
Q Consensus 99 pt~~~ii~~qf~rl~~gDRf~~~~~~~p~~ft~~q~ 134 (204)
||+.||+..||.++++||||||+ +.+|+.||+.|+
T Consensus 547 ~T~~~i~~~~a~r~~~gDRF~~e-n~np~~fT~~gl 581 (633)
T PLN02283 547 ETAFFIFLLMASRRLEADRFFTS-NFNEKTYTKKGL 581 (633)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEe-cCCcCcCCHHHH
Confidence 99999988888888899999999 456999999887
No 4
>KOG2408|consensus
Probab=99.90 E-value=9.2e-25 Score=208.48 Aligned_cols=155 Identities=26% Similarity=0.486 Sum_probs=125.7
Q ss_pred hcCCCCChHHHHHHcCCCCCCCcccccCCCChHHHH-HHHHHhcC---CC---cccccccccCCccC-CCCCCCcchHHh
Q psy9903 33 RDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLK-LLSKIYKS---VD---DVDMYTGGLSEKPL-EGGMLGPTMTCL 104 (204)
Q Consensus 33 Rd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~-~l~~lY~~---~~---diDL~~G~l~E~~~-~g~~vgpt~~~i 104 (204)
....++.|.+|+..|++++++.|.+++++++|.+++ .+..++++ +. ++.+..+.+....+ ..+.+.|+++++
T Consensus 443 ~~~~~g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl 522 (719)
T KOG2408|consen 443 LKVSLGGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGL 522 (719)
T ss_pred cccCCccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHH
Confidence 344589999999999999999999999999999887 44444443 22 56666666665443 445689999999
Q ss_pred HHHHHhhhhcCCeeeeecCCCccccccccccchhhhhhcCCCCCCc-chhhhhhhhhcccCCCCChHHHHHHhCCCCCCC
Q psy9903 105 IANQFVRMKSGDRYWYETSEQPQAFTAGKGLTQHLFEQVGSKVPYG-LDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKT 183 (204)
Q Consensus 105 i~~qf~rl~~gDRf~~~~~~~p~~ft~~q~~~~~Lf~~~~~~~~~g-~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~ 183 (204)
++....+.. |+++.. .+++++|..... .| +||+|+|||||||||||+||+||+.|||+++.+
T Consensus 523 ~~~~~~~~~--d~~~~~------------~i~~~lf~~~~~---~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s 585 (719)
T KOG2408|consen 523 TTQPAKMPD--DQLLNG------------EITERLFVKTDE---DGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATS 585 (719)
T ss_pred Hhchhhccc--chhcCH------------HHHHHHhhhcCc---ccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCC
Confidence 987654333 777654 789999986532 34 999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHhhhC
Q psy9903 184 FDDLKDHVDDESLKLLSKIYK 204 (204)
Q Consensus 184 f~dl~~~~~~~~~~~l~~~Y~ 204 (204)
|+||.+++.++.+++|+++|+
T Consensus 586 ~edL~~~i~~~~~~kl~~lY~ 606 (719)
T KOG2408|consen 586 FEDLSDEIEPEIINKLRTLYG 606 (719)
T ss_pred HHHhhhhhhHHHHHHHHHhcC
Confidence 999999999888999999996
No 5
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.73 E-value=5.8e-20 Score=171.40 Aligned_cols=151 Identities=28% Similarity=0.498 Sum_probs=93.4
Q ss_pred ChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcC-C----CcccccccccCC--ccCCCCCCCcchHHhHHHHHhh
Q psy9903 39 GYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKS-V----DDVDMYTGGLSE--KPLEGGMLGPTMTCLIANQFVR 111 (204)
Q Consensus 39 ~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~-~----~diDL~~G~l~E--~~~~g~~vgpt~~~ii~~qf~r 111 (204)
.|..|...+++.++++|+.+++|++|+++..-..++.. . ..+.|.-..+.- .....+.+++++++++.+...+
T Consensus 289 ~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~a~~ 368 (530)
T PF03098_consen 289 YYKGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQPAQK 368 (530)
T ss_dssp CGTTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSEEEH
T ss_pred cccCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCcccc
Confidence 78899999999999999999999999998753333321 1 222332211110 0112233567777766543322
Q ss_pred hhcCCeeeeecCCCccccccccccchhhhhhcCCCCCCcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccCC
Q psy9903 112 MKSGDRYWYETSEQPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHV 191 (204)
Q Consensus 112 l~~gDRf~~~~~~~p~~ft~~q~~~~~Lf~~~~~~~~~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~~ 191 (204)
+-. ++++.+ .+++++|...+. +.++||+++|||||||||||+||+||+.|||+++++|+||.+.+
T Consensus 369 ~d~-~~~~~~------------~l~~~lf~~~~~--~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~ 433 (530)
T PF03098_consen 369 VDN-PRFLVD------------DLRNHLFGPRNV--PGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEI 433 (530)
T ss_dssp HBT-TBHSHH------------HHHTSEESTTSS--SEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHH
T ss_pred ccH-HHHhhh------------HhhcccccccCC--cchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhh
Confidence 211 133322 578888864432 23359999999999999999999999999999999999998866
Q ss_pred CHHH-HHHHHhhhC
Q psy9903 192 DDES-LKLLSKIYK 204 (204)
Q Consensus 192 ~~~~-~~~l~~~Y~ 204 (204)
+++. +++|+++|+
T Consensus 434 ~~~~i~~~L~~~Y~ 447 (530)
T PF03098_consen 434 SDEEIAAALRALYG 447 (530)
T ss_dssp TSHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhcc
Confidence 6554 599999995
No 6
>PLN02283 alpha-dioxygenase
Probab=99.65 E-value=2.1e-17 Score=156.33 Aligned_cols=55 Identities=29% Similarity=0.626 Sum_probs=52.3
Q ss_pred CCcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccCCCHHHHHHHHhhhC
Q psy9903 148 PYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK 204 (204)
Q Consensus 148 ~~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~~~~~~~~~l~~~Y~ 204 (204)
+.|+||+++|||||||||+|+||+||+.|||+++++|+||++ +++++++|+++|+
T Consensus 468 ~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~--d~e~~~~L~~lY~ 522 (633)
T PLN02283 468 PDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVYG 522 (633)
T ss_pred cccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--CHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999999987 6889999999995
No 7
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=27.13 E-value=32 Score=23.75 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=16.5
Q ss_pred cHHHHHhhhhhcCCCCChH
Q psy9903 23 DLVSLNIQRGRDHGLPGYP 41 (204)
Q Consensus 23 Dl~a~~IqrgRd~gl~~Yn 41 (204)
-.++..|.|||..||=||.
T Consensus 50 r~l~~aIKrAR~~~LlP~~ 68 (70)
T TIGR00165 50 RRLARAIKRARYLALLPYV 68 (70)
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 3588999999999999885
No 8
>PF09133 SANTA: SANTA (SANT Associated); InterPro: IPR015216 The SANTA domain (SANT associated) is approximately 90 amino acids in length and is conserved in eukaryotes. It is sometimes found in association with the SANT domain (IPR001005 from INTERPRO, also known as the Myb-like DNA-binding domain) implying a putative function in regulating chromatin remodelling. Sequence analysis has showed that the SANTA domain is likely to form four central beta-sheets with three flanking alpha-helices. Many conserved hydrophobic residues are present which implies a possible role in protein-protein interactions.
Probab=26.68 E-value=33 Score=24.81 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=24.6
Q ss_pred hhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhc
Q psy9903 154 VSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLK 188 (204)
Q Consensus 154 ~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~ 188 (204)
-.+|..+.++.|+|.+.-=+...|.| .+|+++.
T Consensus 57 G~in~~~~~~nGfp~~v~~~F~~GFP--~~W~~~~ 89 (93)
T PF09133_consen 57 GPINRSRMRENGFPSEVIKKFMNGFP--ENWEEYI 89 (93)
T ss_pred cccCHHhHHHcCCCHHHHHHHhcCCC--HHHHHHH
Confidence 35677999999999776555566765 6788874
No 9
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=23.70 E-value=36 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.6
Q ss_pred cHHHHHhhhhhcCCCCChH
Q psy9903 23 DLVSLNIQRGRDHGLPGYP 41 (204)
Q Consensus 23 Dl~a~~IqrgRd~gl~~Yn 41 (204)
-.++..|.|||..||=||.
T Consensus 59 r~l~~aIkrAR~~~LlPf~ 77 (79)
T PRK00391 59 RQLATAIKRARFLALLPYV 77 (79)
T ss_pred HHHHHHHHHHHHhhCCCcc
Confidence 3588999999999999885
No 10
>PRK13401 30S ribosomal protein S18; Provisional
Probab=21.18 E-value=42 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.1
Q ss_pred cHHHHHhhhhhcCCCCChHH
Q psy9903 23 DLVSLNIQRGRDHGLPGYPK 42 (204)
Q Consensus 23 Dl~a~~IqrgRd~gl~~Yn~ 42 (204)
-.++..|.|+|..||-||..
T Consensus 58 R~l~~AIKrAR~laLlPf~~ 77 (82)
T PRK13401 58 RQVATAIKNAREMALLPYPG 77 (82)
T ss_pred HHHHHHHHHHHHHhcCcccc
Confidence 35889999999999998864
Done!