Query psy9903
Match_columns 204
No_of_seqs 204 out of 1287
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:37:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 2.1E-39 7E-44 296.1 4.3 166 1-177 285-453 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 2.1E-39 7.2E-44 303.0 3.9 166 1-177 412-580 (595)
3 3nt1_A Prostaglandin-endoperox 100.0 2.3E-31 7.8E-36 248.3 2.7 119 20-146 412-539 (587)
4 1q4g_A Prostaglandin G/H synth 100.0 5.1E-30 1.7E-34 238.4 4.9 121 20-146 412-539 (553)
5 1d2v_C Myeloperoxidase; heme-p 99.8 4.5E-23 1.5E-27 188.3 -5.5 151 37-204 198-357 (466)
6 3q9k_A Lactoperoxidase, LPO; b 99.8 6.6E-23 2.2E-27 191.7 -4.6 152 37-204 325-485 (595)
7 3nt1_A Prostaglandin-endoperox 99.5 4.5E-15 1.5E-19 138.6 4.0 54 149-204 412-465 (587)
8 1q4g_A Prostaglandin G/H synth 99.5 2.4E-14 8E-19 133.1 4.2 55 148-204 411-465 (553)
9 3r8n_R 30S ribosomal protein S 43.5 9.1 0.00031 24.2 1.3 18 24-41 35-52 (55)
10 3i1m_R 30S ribosomal protein S 36.0 15 0.0005 24.8 1.4 18 24-41 54-71 (75)
11 2vqe_R 30S ribosomal protein S 28.7 21 0.00071 24.7 1.3 18 24-41 65-82 (88)
12 2yiu_B Cytochrome C1, heme pro 25.5 44 0.0015 27.8 2.9 47 149-201 40-90 (263)
13 3bbn_R Ribosomal protein S18; 23.9 30 0.001 24.7 1.3 20 23-42 60-79 (103)
14 3cx5_D Cytochrome C1, heme pro 23.6 40 0.0014 27.8 2.3 49 149-203 22-71 (248)
15 1pp9_D Cytochrome C-1, cytochr 23.5 42 0.0014 27.5 2.4 48 149-202 19-67 (241)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=2.1e-39 Score=296.14 Aligned_cols=166 Identities=36% Similarity=0.705 Sum_probs=141.8
Q ss_pred CCchhhHhhccccCCCCCCccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCC-ChHHHHHHHHHhcCCCc
Q psy9903 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV-DDESLKLLSKIYKSVDD 79 (204)
Q Consensus 1 ~~~~~~~~~lf~~~~~~~~~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~-~~~~i~~l~~lY~~~~d 79 (204)
+++++||++||+..+. .|+||+|+|||||||||||+||+||++||++++++|++++..+ +++++++|+++|+++++
T Consensus 285 ~l~~~l~~~lf~~~~~---~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~L~~lY~~~d~ 361 (466)
T 1d2v_C 285 IAVDEIRERLFEQVMR---IGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNN 361 (466)
T ss_dssp CSCHHHHTCBTGGGSS---SCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGG
T ss_pred hhhHHHHHHhhcccCc---cchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHHHHHHhCCccc
Confidence 4789999999998876 8999999999999999999999999999999999999998544 57899999999999999
Q ss_pred ccccccccCCccCCCCCCCcchHHhHHHHHhhhhcCCeeeeecCCCccccccccc--cchhhhhhcCCCCCCcchhhhhh
Q psy9903 80 VDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKG--LTQHLFEQVGSKVPYGLDLVSLN 157 (204)
Q Consensus 80 iDL~~G~l~E~~~~g~~vgpt~~~ii~~qf~rl~~gDRf~~~~~~~p~~ft~~q~--~~~~Lf~~~~~~~~~g~d~~~~~ 157 (204)
||||+|+++|.+++|+.+||||.|||++||.+|++||||||+ +|+.||..|+ +++..++++.|.+ ++++.++.|
T Consensus 362 vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~ye---n~~~ft~~ql~ei~~~sl~~iic~n-~~~~~iq~~ 437 (466)
T 1d2v_C 362 IDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWE---NEGVFSMQQRQALAQISLPRIICDN-TGITTVSKN 437 (466)
T ss_dssp SCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTT---STTTSCHHHHHHHTTCCHHHHHHHH-SSCCEEECS
T ss_pred cceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCccccc---CCCcccchhhHHHHhCCHHHHHHhc-CCCcccCCC
Confidence 999999999999999999999999999999999999999999 6899998886 4555666665542 455544444
Q ss_pred hhhcccCCCCChHHHHHHhC
Q psy9903 158 IQRGRDHGLPGYPRWRKYCG 177 (204)
Q Consensus 158 i~r~rd~gl~~Y~~~r~~c~ 177 (204)
.=+-.|+|..-+..|.
T Consensus 438 ----~~F~~~~~~n~~~~C~ 453 (466)
T 1d2v_C 438 ----NIFMSNSYPRDFVNCS 453 (466)
T ss_dssp ----CTTTCCSTTTTEEEGG
T ss_pred ----ccccCCCCCCCCcCcc
Confidence 2255666655567775
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=2.1e-39 Score=302.97 Aligned_cols=166 Identities=36% Similarity=0.719 Sum_probs=145.5
Q ss_pred CCchhhHhhccccCCCCCCccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCC-ChHHHHHHHHHhcCCCc
Q psy9903 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV-DDESLKLLSKIYKSVDD 79 (204)
Q Consensus 1 ~~~~~~~~~lf~~~~~~~~~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~-~~~~i~~l~~lY~~~~d 79 (204)
+++++||++||+..+.. +|+||+|+|||||||||||+||+||++||++++++|++++..+ +++++++|+++|+++++
T Consensus 412 ~~~~~l~~~Lf~~~~~~--~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~l~~lY~~~d~ 489 (595)
T 3q9k_A 412 MVTSELRNKLFQPTHKI--HGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDN 489 (595)
T ss_dssp CSCHHHHTCEECTTSCS--EEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHHHSSGGG
T ss_pred cCCHHHHHHhccCCCcc--ccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHHHHHHhCCccc
Confidence 47899999999987662 4999999999999999999999999999999999999998555 46677999999999999
Q ss_pred ccccccccCCccCCCCCCCcchHHhHHHHHhhhhcCCeeeeecCCCccccccccc--cchhhhhhcCCCCCCcchhhhhh
Q psy9903 80 VDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKG--LTQHLFEQVGSKVPYGLDLVSLN 157 (204)
Q Consensus 80 iDL~~G~l~E~~~~g~~vgpt~~~ii~~qf~rl~~gDRf~~~~~~~p~~ft~~q~--~~~~Lf~~~~~~~~~g~d~~~~~ 157 (204)
||||+|+++|++++|+.+||||.|||++||.+||+||||||| +|+.||++|+ +++..++++.|.+ ++++-++.|
T Consensus 490 iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~ye---n~~~ft~~ql~ei~~~sla~iic~n-~~i~~vq~~ 565 (595)
T 3q9k_A 490 IDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE---NPGVFTEKQRDSLQKVSFSRLICDN-THITKVPLH 565 (595)
T ss_dssp SCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTT---SBTTBCHHHHHHHTTCCHHHHHHHH-SSCCEEESS
T ss_pred cceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeec---CCCcCCHHHHHHHHhCCHHHHHhcC-CCcccccHh
Confidence 999999999999999999999999999999999999999999 6899999887 5666777776654 677777777
Q ss_pred hhhcccCCCCChHHHHHHhC
Q psy9903 158 IQRGRDHGLPGYPRWRKYCG 177 (204)
Q Consensus 158 i~r~rd~gl~~Y~~~r~~c~ 177 (204)
+.+ .++|..-+..|.
T Consensus 566 ~F~-----~~~~~n~~v~C~ 580 (595)
T 3q9k_A 566 AFQ-----ANNYPHDFVDCS 580 (595)
T ss_dssp TTS-----CCCTTTTEEEGG
T ss_pred hcc-----CCCCCCCCccCC
Confidence 744 566766777884
No 3
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.96 E-value=2.3e-31 Score=248.33 Aligned_cols=119 Identities=21% Similarity=0.393 Sum_probs=106.2
Q ss_pred ccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcCCCcccccccccCCccCCCCCCCc
Q psy9903 20 YGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGP 99 (204)
Q Consensus 20 ~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~~~diDL~~G~l~E~~~~g~~vgp 99 (204)
.++||+|+|||||||||||+||+||++||++++++|+|++. +++++++|+++|+++++||||+|+++|++++|+.+||
T Consensus 412 ~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~--~~~~~~~L~~lY~~~ddIDL~vGglaE~~~pG~~vGp 489 (587)
T 3nt1_A 412 AVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGE 489 (587)
T ss_dssp GGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCH
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhCCHhheeeecccccccCCCCccHHH
Confidence 68999999999999999999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred chHHhHHHH------HhhhhcCCeeeeecCCCccccccccc---cchhhhhhcCCC
Q psy9903 100 TMTCLIANQ------FVRMKSGDRYWYETSEQPQAFTAGKG---LTQHLFEQVGSK 146 (204)
Q Consensus 100 t~~~ii~~q------f~rl~~gDRf~~~~~~~p~~ft~~q~---~~~~Lf~~~~~~ 146 (204)
||.|| ..| |.+++.||||| +|+.||.+|. ++...++++.|.
T Consensus 490 Tf~ci-~~qf~l~~~~~~~r~gDrfw-----~~~~Ft~~qgl~~I~~~sL~~lic~ 539 (587)
T 3nt1_A 490 TMVEL-GAPFSLKGLMGNPICSPQYW-----KPSTFGGEVGFKIINTASIQSLICN 539 (587)
T ss_dssp HHHHH-HHHHHHHHHHTSGGGSTTTS-----SGGGGTSHHHHHHHHTCCHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhcCcccCCccc-----CcCccChHHHHHHHHHCCHHHHHHh
Confidence 99999 555 47899999999 6788987773 444555555443
No 4
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.96 E-value=5.1e-30 Score=238.36 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=109.0
Q ss_pred ccccHHHHHhhhhhcCCCCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcCCCcccccccccCCccCCCCCCCc
Q psy9903 20 YGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGP 99 (204)
Q Consensus 20 ~g~Dl~a~~IqrgRd~gl~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~~~diDL~~G~l~E~~~~g~~vgp 99 (204)
.++||+++|||||||||||+||+||++||++++++|+|++. +++++++|+++|+++++||||+|+++|++++|+.+||
T Consensus 412 ~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~--d~~~~~~L~~lY~~~ddiDL~vG~laE~~~~G~~~Gp 489 (553)
T 1q4g_A 412 HILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGE 489 (553)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSSBH
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC--CHHHHHHHHHHhcChhhccccccccccccCCCCCccH
Confidence 68999999999999999999999999999999999999997 8899999999999999999999999999999999999
Q ss_pred chHHhHHH-HHhhhh---cCCeeeeecCCCccccccccccc--h-hhhhhcCCC
Q psy9903 100 TMTCLIAN-QFVRMK---SGDRYWYETSEQPQAFTAGKGLT--Q-HLFEQVGSK 146 (204)
Q Consensus 100 t~~~ii~~-qf~rl~---~gDRf~~~~~~~p~~ft~~q~~~--~-~Lf~~~~~~ 146 (204)
|+.||+++ ||++++ .|||||| +|+.||++|+.+ + ..++++.|.
T Consensus 490 t~~~ii~~~~~~~l~~~~~~d~~~~----~~~~ft~~ql~ei~~~~sla~iic~ 539 (553)
T 1q4g_A 490 SMIEMGAPFSLKGLLGNPICSPEYW----KASTFGGEVGFNLVKTATLKKLVCL 539 (553)
T ss_dssp HHHHHHHHHHHHHHHTSGGGSTTTC----SGGGGTSHHHHHHHHTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCcCCCcccc----CCCCcCHHHHHHHHHhCCHHHHHHH
Confidence 99999998 799996 5898877 578999988743 3 356655553
No 5
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=99.83 E-value=4.5e-23 Score=188.25 Aligned_cols=151 Identities=26% Similarity=0.449 Sum_probs=107.8
Q ss_pred CCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcC-------CCcccccccccCC-ccCCCCCCCcchHHhHHHH
Q psy9903 37 LPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKS-------VDDVDMYTGGLSE-KPLEGGMLGPTMTCLIANQ 108 (204)
Q Consensus 37 l~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~-------~~diDL~~G~l~E-~~~~g~~vgpt~~~ii~~q 108 (204)
++.|.+|...+++.+++.| .+++||+|+++......+.. ...+.|.-..+.. .....+.++|+++++..+
T Consensus 198 ~~~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~g~d~~lrgl~~q- 275 (466)
T 1d2v_C 198 LPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMAT- 275 (466)
T ss_dssp SCCCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCTTSSBCSSCSEEEGGGTTTCHHHHHHTTCHHHHHHHHHHS-
T ss_pred CCcccCCCCCCCCchhHHH-HHHHhcccccCchhhccccccccccCCCCceeHHHHhcChHHHhhccCchHHHHHHhhC-
Confidence 6788999999999999999 99999999987643222221 1123232221111 111122356777776642
Q ss_pred HhhhhcCCeeeeecCCCccccccccccchhhhhhcCCCCCCcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhc
Q psy9903 109 FVRMKSGDRYWYETSEQPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLK 188 (204)
Q Consensus 109 f~rl~~gDRf~~~~~~~p~~ft~~q~~~~~Lf~~~~~~~~~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~ 188 (204)
-..+.+.|+++.+ .++++||...+ ..|+||+++|||||||||||+||+||+.|||+++++|+||+
T Consensus 276 ~a~~~~~d~~l~~------------~l~~~lf~~~~---~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~ 340 (466)
T 1d2v_C 276 PAKLNRQNQIAVD------------EIRERLFEQVM---RIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLG 340 (466)
T ss_dssp EEECCBTTBCSCH------------HHHTCBTGGGS---SSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHH
T ss_pred ccccccCchhhhH------------HHHHHhhcccC---ccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHh
Confidence 2222234555443 67888997653 47999999999999999999999999999999999999999
Q ss_pred cCCC-HHHHHHHHhhhC
Q psy9903 189 DHVD-DESLKLLSKIYK 204 (204)
Q Consensus 189 ~~~~-~~~~~~l~~~Y~ 204 (204)
+.++ ++++++|+++|+
T Consensus 341 ~~~~d~~~~~~L~~lY~ 357 (466)
T 1d2v_C 341 TVLRNLKLARKLMEQYG 357 (466)
T ss_dssp HHHTCHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHhC
Confidence 7664 678899999996
No 6
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=99.83 E-value=6.6e-23 Score=191.69 Aligned_cols=152 Identities=26% Similarity=0.457 Sum_probs=111.3
Q ss_pred CCChHHHHHHcCCCCCCCcccccCCCChHHHHHHHHHhcC-------CCcccccccccCCc-cCCCCCCCcchHHhHHHH
Q psy9903 37 LPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKS-------VDDVDMYTGGLSEK-PLEGGMLGPTMTCLIANQ 108 (204)
Q Consensus 37 l~~Yn~yr~~~~l~~~~sF~dl~~~~~~~~i~~l~~lY~~-------~~diDL~~G~l~E~-~~~g~~vgpt~~~ii~~q 108 (204)
+|+|.+|...+++.+++.| ++++||+|+++......+.. ...+.|....+... ....+.++++++++..+
T Consensus 325 ~~~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~L~~~ff~~~~~~~~~gid~llrGl~~q- 402 (595)
T 3q9k_A 325 IPPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAK- 402 (595)
T ss_dssp SCSCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCTTSSBCSTTCEEEGGGGBTCCHHHHTTTCSHHHHHHHHHS-
T ss_pred CCCccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCccccccCCCCceeHHHHhcChHHhhhccchHHHHHHHhhC-
Confidence 6889999999999999999 99999999987643222221 12344433332211 11223468888887743
Q ss_pred HhhhhcCCeeeeecCCCccccccccccchhhhhhcCCCCCCcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhc
Q psy9903 109 FVRMKSGDRYWYETSEQPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLK 188 (204)
Q Consensus 109 f~rl~~gDRf~~~~~~~p~~ft~~q~~~~~Lf~~~~~~~~~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~ 188 (204)
-..+...|+++.+ .++++||...+. ..|+||+++|||||||||||+||+||+.|||+++++|+||+
T Consensus 403 ~a~~~~~d~~~~~------------~l~~~Lf~~~~~--~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~ 468 (595)
T 3q9k_A 403 KSKLMNQDKMVTS------------ELRNKLFQPTHK--IHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQ 468 (595)
T ss_dssp EEECCCTTSCSCH------------HHHTCEECTTSC--SEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHH
T ss_pred cccccCCCccCCH------------HHHHHhccCCCc--cccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHh
Confidence 3333355666554 688899975421 23999999999999999999999999999999999999999
Q ss_pred cCCCH-HHHHHHHhhhC
Q psy9903 189 DHVDD-ESLKLLSKIYK 204 (204)
Q Consensus 189 ~~~~~-~~~~~l~~~Y~ 204 (204)
++|++ +.+++|+++|+
T Consensus 469 ~~~~~~~~~~~l~~lY~ 485 (595)
T 3q9k_A 469 TVLKNKILAKKLMDLYK 485 (595)
T ss_dssp HHHTCHHHHHHHHHHHS
T ss_pred hhcCcHHHHHHHHHHhC
Confidence 87764 56699999996
No 7
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.51 E-value=4.5e-15 Score=138.61 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=51.4
Q ss_pred CcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccCCCHHHHHHHHhhhC
Q psy9903 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK 204 (204)
Q Consensus 149 ~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~~~~~~~~~l~~~Y~ 204 (204)
.+.||+++|||||||||||+||+||+.|||+++++|+||++ +++++++|+++|+
T Consensus 412 ~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~--~~~~~~~L~~lY~ 465 (587)
T 3nt1_A 412 AVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYS 465 (587)
T ss_dssp GGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999987 6889999999996
No 8
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=99.45 E-value=2.4e-14 Score=133.13 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=52.2
Q ss_pred CCcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccCCCHHHHHHHHhhhC
Q psy9903 148 PYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK 204 (204)
Q Consensus 148 ~~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~~~~~~~~~l~~~Y~ 204 (204)
..+.|++++|||||||||||+||+||+.|||+++++|+||++ +++++++|+++|+
T Consensus 411 ~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~--d~~~~~~L~~lY~ 465 (553)
T 1q4g_A 411 HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYG 465 (553)
T ss_dssp TTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC--CHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999997 7899999999996
No 9
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=43.47 E-value=9.1 Score=24.24 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.0
Q ss_pred HHHHHhhhhhcCCCCChH
Q psy9903 24 LVSLNIQRGRDHGLPGYP 41 (204)
Q Consensus 24 l~a~~IqrgRd~gl~~Yn 41 (204)
.++..|.|||.+||-||.
T Consensus 35 ~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 478899999999999885
No 10
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=35.99 E-value=15 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.0
Q ss_pred HHHHHhhhhhcCCCCChH
Q psy9903 24 LVSLNIQRGRDHGLPGYP 41 (204)
Q Consensus 24 l~a~~IqrgRd~gl~~Yn 41 (204)
.++..|.|||.+||-||.
T Consensus 54 ~l~~AIKrAR~~gLlP~~ 71 (75)
T 3i1m_R 54 QLARAIKRARYLSLLPYT 71 (75)
T ss_dssp HHHHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHHHhccCCcC
Confidence 478899999999999885
No 11
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=28.71 E-value=21 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred HHHHHhhhhhcCCCCChH
Q psy9903 24 LVSLNIQRGRDHGLPGYP 41 (204)
Q Consensus 24 l~a~~IqrgRd~gl~~Yn 41 (204)
.++..|.|||.+||-||.
T Consensus 65 ~l~~AIKrAR~lgLLP~~ 82 (88)
T 2vqe_R 65 ILAKTIKRARILGLLPFT 82 (88)
T ss_dssp HHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhcCCcc
Confidence 578999999999998885
No 12
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=25.48 E-value=44 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=36.1
Q ss_pred CcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccC----CCHHHHHHHHh
Q psy9903 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDH----VDDESLKLLSK 201 (204)
Q Consensus 149 ~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~----~~~~~~~~l~~ 201 (204)
...|.+++ |||... |.++|..|.--....|..|.+. ++++.++++.+
T Consensus 40 ~~~D~asl--qRG~qV----y~evCaaCHsl~~v~yr~L~d~Ggp~~te~evka~a~ 90 (263)
T 2yiu_B 40 GKFDQHQL--QRGLQV----YTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAA 90 (263)
T ss_dssp CCCCHHHH--HHHHHH----HHHTGGGTCCCTTCBGGGGGSTTSCCCCHHHHHHHHT
T ss_pred CccchHHH--HHHHHH----HHHHhhccCCcccchhHhhhhccCCCCCHHHHHHHHh
Confidence 34788886 999887 9999999976667778888644 67777777653
No 13
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.85 E-value=30 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=17.3
Q ss_pred cHHHHHhhhhhcCCCCChHH
Q psy9903 23 DLVSLNIQRGRDHGLPGYPK 42 (204)
Q Consensus 23 Dl~a~~IqrgRd~gl~~Yn~ 42 (204)
-.++..|.|||.+||-||..
T Consensus 60 R~l~~AIKrAR~laLLPy~~ 79 (103)
T 3bbn_R 60 RLITSAIKQARILSLLPFLN 79 (103)
T ss_dssp TTTHHHHHHHTTTTSSCTTC
T ss_pred HHHHHHHHHHHHHhCCCccc
Confidence 35889999999999988875
No 14
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=23.56 E-value=40 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=36.6
Q ss_pred CcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccC-CCHHHHHHHHhhh
Q psy9903 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDH-VDDESLKLLSKIY 203 (204)
Q Consensus 149 ~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~-~~~~~~~~l~~~Y 203 (204)
...|..++ |||... |.++|..|.--..-.|..|.+. ++++.++++++-|
T Consensus 22 ~~~D~asl--qRG~qv----y~~~CaaCHsl~~v~yr~l~~~g~te~evk~~a~~~ 71 (248)
T 3cx5_D 22 ETFDHASI--RRGYQV----YREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEF 71 (248)
T ss_dssp CCCCHHHH--HHHHHH----HHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTS
T ss_pred CCcchHhH--hhhHHH----HHHhhhhccCcccccccccccCCCCHHHHHHHHHhh
Confidence 34687875 999887 9999999976666678888654 5677777776543
No 15
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=23.45 E-value=42 Score=27.53 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=35.7
Q ss_pred CcchhhhhhhhhcccCCCCChHHHHHHhCCCCCCChhhhccC-CCHHHHHHHHhh
Q psy9903 149 YGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDH-VDDESLKLLSKI 202 (204)
Q Consensus 149 ~g~d~~~~~i~r~rd~gl~~Y~~~r~~c~l~~~~~f~dl~~~-~~~~~~~~l~~~ 202 (204)
...|..++ |||... |.++|..|.--....|..|.+. ++++.++++.+-
T Consensus 19 ~~~D~~sl--qRG~qv----y~~~CaaCHSl~y~~~r~l~~~g~te~evk~~a~~ 67 (241)
T 1pp9_D 19 SSLDHTSI--RRGFQV----YKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEE 67 (241)
T ss_dssp CCCCHHHH--HHHHHH----HHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHHT
T ss_pred CCcchHHH--hhhHHH----HHHhhhhccCccccccccccccCCCHHHHHHHHHh
Confidence 34688875 999887 9999999987777778877544 567767666643
Done!