RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9903
(204 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 209 bits (535), Expect = 5e-67
Identities = 72/128 (56%), Positives = 95/128 (74%), Gaps = 2/128 (1%)
Query: 3 TDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV 62
TD LT H F + G+ P+GLDL +LNIQRGRDHGLPGY +R++CGL TFDDL +
Sbjct: 234 TDELTTHFFFRGGN--PFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIM 291
Query: 63 DDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYET 122
E+++ L ++YKSVDD+D+Y GGLSEKP+ GG++GPT C+I QF R++ GDR+WYE
Sbjct: 292 SPETIQKLRRLYKSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYEN 351
Query: 123 SEQPQAFT 130
QP +FT
Sbjct: 352 GGQPSSFT 359
Score = 105 bits (264), Expect = 4e-27
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 123 SEQPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPK 182
+++ F LT H F + G+ P+GLDL +LNIQRGRDHGLPGY +R++CGL
Sbjct: 226 AQKVDRFFT-DELTTHFFFRGGN--PFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRAT 282
Query: 183 TFDDLKDHVDDESLKLLSKIYK 204
TFDDL + E+++ L ++YK
Sbjct: 283 TFDDLLGIMSPETIQKLRRLYK 304
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 174 bits (444), Expect = 4e-52
Identities = 65/136 (47%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 3 TDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV 62
+D L LF GLDL +LNIQRGRDHGLP Y ++R++CGL +F+DL D +
Sbjct: 366 SDELRNRLFGPRN-FPGSGLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEI 424
Query: 63 DDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYE 121
DE L + L ++Y DD+D++ GGL+EKP+ GG++GPT C+IA QF+R++ GDR+WYE
Sbjct: 425 GDEELAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYE 484
Query: 122 TSEQPQAFTAGKGLTQ 137
P FT G+ L +
Sbjct: 485 N---PGVFT-GEQLEE 496
Score = 90.4 bits (225), Expect = 3e-21
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 133 KGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVD 192
L LF GLDL +LNIQRGRDHGLP Y +R++CGL +F+DL D +
Sbjct: 367 DELRNRLFGPRN-FPGSGLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIG 425
Query: 193 DESL-KLLSKIYK 204
DE L + L ++Y
Sbjct: 426 DEELAEKLKELYG 438
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 157 bits (399), Expect = 3e-46
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 6 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV-DD 64
LT+ LFE LDL +LNIQRGRDHGLPGY +RK+C LS +TF+DLK+ + +D
Sbjct: 276 LTEKLFEMAHE---VALDLAALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKND 332
Query: 65 ESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSE 124
+ + L ++Y ++D++ GG+ E L G +GPT+ CL+A QF R++ GDR+WY E
Sbjct: 333 DVREKLKRLYGHPGNIDLFVGGILEDLLPGARVGPTLACLLAEQFRRLRDGDRFWY---E 389
Query: 125 QPQAFTAGKGLTQ 137
P F+ + LTQ
Sbjct: 390 NPGVFSPAQ-LTQ 401
Score = 90.8 bits (226), Expect = 1e-21
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHV-DD 193
LT+ LFE LDL +LNIQRGRDHGLPGY +RK+C LS +TF+DLK+ + +D
Sbjct: 276 LTEKLFEMAHE---VALDLAALNIQRGRDHGLPGYNDYRKFCNLSVAETFEDLKNEIKND 332
Query: 194 ESLKLLSKIYK 204
+ + L ++Y
Sbjct: 333 DVREKLKRLYG 343
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 137 bits (346), Expect = 8e-39
Identities = 57/131 (43%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 1 METDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD 60
M D L + LF+Q GLDL +LN+QRGRDHGLPGY WR++CGLS+P+ +L
Sbjct: 247 MLVDELRERLFQQTKR---MGLDLAALNLQRGRDHGLPGYNAWRRFCGLSQPQNLAELAA 303
Query: 61 HVDDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW 119
+++ L + L +Y + D++D++ GG++E + GG +GP + CLI+ QF R++ GDR+W
Sbjct: 304 VLNNTVLARKLLDLYGTPDNIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDGDRFW 363
Query: 120 YETSEQPQAFT 130
+ E P FT
Sbjct: 364 W---ENPGVFT 371
Score = 80.5 bits (199), Expect = 6e-18
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
L + LF+Q GLDL +LN+QRGRDHGLPGY WR++CGLS+P+ +L +++
Sbjct: 252 LRERLFQQTKR---MGLDLAALNLQRGRDHGLPGYNAWRRFCGLSQPQNLAELAAVLNNT 308
Query: 195 SL-KLLSKIYK 204
L + L +Y
Sbjct: 309 VLARKLLDLYG 319
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 131 bits (331), Expect = 2e-36
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 4/105 (3%)
Query: 21 GLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYKSVDD 79
G DL +LNIQRGRDHGLP Y + R+ GL +F D+ D L L+ +Y VD
Sbjct: 285 GFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDI---TSDPDLAARLASVYGDVDQ 341
Query: 80 VDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSE 124
+D++ GGL+E + GG++G T + +IA+QF R++ GDR++YE +
Sbjct: 342 IDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFYENDD 386
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 150 GLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL-KLLSKIYK 204
G DL +LNIQRGRDHGLP Y + R+ GL +F D+ D L L+ +Y
Sbjct: 285 GFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDI---TSDPDLAARLASVYG 337
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 124 bits (312), Expect = 4e-33
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 6 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDE 65
LT+ LF LDL SLN+QRGRDHGLPGY WR++CGL T DL + D+
Sbjct: 391 LTEKLFVLS---NSSTLDLASLNLQRGRDHGLPGYNDWREFCGLPRLATPADLATAIADQ 447
Query: 66 SL--KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETS 123
++ K+L +YK D++D++ GGL+E L G GP CLI Q ++ GDR+W+E S
Sbjct: 448 AVADKILD-LYKHPDNIDVWLGGLAEDFLPGARTGPLFACLIGKQMKALRDGDRFWWENS 506
Score = 72.1 bits (177), Expect = 6e-15
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
LT+ LF LDL SLN+QRGRDHGLPGY WR++CGL T DL + D+
Sbjct: 391 LTEKLFVLS---NSSTLDLASLNLQRGRDHGLPGYNDWREFCGLPRLATPADLATAIADQ 447
Query: 195 SL--KLLSKIYK 204
++ K+L +YK
Sbjct: 448 AVADKILD-LYK 458
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 109 bits (274), Expect = 1e-28
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 21 GLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDV 80
GLDL +LNIQRGRD GLP Y + R++ GL P +F D+ D E K L+++Y DDV
Sbjct: 246 GLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDI--LTDPELAKKLAELYGDPDDV 303
Query: 81 DMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYE 121
D++ GGL EK + LG + +I QF R+ GDR++Y
Sbjct: 304 DLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYV 344
Score = 58.2 bits (141), Expect = 3e-10
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 76 SVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSEQPQAFTAGKGL 135
D + + + PL+ + + +
Sbjct: 180 DRIDENGQPKEIPDVPLKDFFFNTSR-----SILSDTGLDPLLRGFLRQPAGLIDQNVDD 234
Query: 136 TQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDES 195
LF + GLDL +LNIQRGRD GLP Y R++ GL P +F D+ D E
Sbjct: 235 VMFLFGPLE---GVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDI--LTDPEL 289
Query: 196 LKLLSKIY 203
K L+++Y
Sbjct: 290 AKKLAELY 297
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 98.9 bits (247), Expect = 4e-24
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 23 DLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKD---HVDDESLKLLSKIY-KSVD 78
DL++LNIQRGRDHGLP Y R+ GL T+ D+ D E L+ L+++Y +
Sbjct: 384 DLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPELLERLAELYGNDLS 443
Query: 79 DVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYETSE 124
+D+Y GG+ E +GG G +I +QF R++ GDR+W+E +
Sbjct: 444 KLDLYVGGMLE--SKGGGPGELFRAIILDQFQRLRDGDRFWFENVK 487
Score = 58.5 bits (142), Expect = 3e-10
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 152 DLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKD---HVDDESLKLLSKIY 203
DL++LNIQRGRDHGLP Y R+ GL T+ D+ D E L+ L+++Y
Sbjct: 384 DLMALNIQRGRDHGLPDYNTAREAFGLPPRTTWSDINPDLFKKDPELLERLAELY 438
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 61.5 bits (150), Expect = 2e-11
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 29 IQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLS 88
I++GR L + +RK GL +F++L D E L ++Y VD V+ Y G +
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEELTG--DPEVAAELEELYGDVDAVEFYVGLFA 422
Query: 89 EKPLEGGMLGPTMTCLIA 106
E P L P M ++A
Sbjct: 423 EDPRPNSPLPPLMVEMVA 440
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 158 IQRGRDHGLPGYPRWRKYCGLSEPKTFDDL 187
I++GR L + +RK GL +F++L
Sbjct: 365 IEQGRKLRLASFNDYRKRFGLPPYTSFEEL 394
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 55.1 bits (133), Expect = 4e-09
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 75 KSVDDVDMYTGGLSEKP-LEGGMLGPTMTCLIANQFVRMKSGDRYWY 120
K +D+VD++ GGL+EK GGMLG T + Q R++ GDR++Y
Sbjct: 481 KGLDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYY 527
Score = 33.2 bits (76), Expect = 0.084
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 151 LDLVSLNIQRGRDHGLPG 168
LDL +LNI RGRD GLP
Sbjct: 372 LDLAALNIARGRDTGLPT 389
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 50.4 bits (121), Expect = 2e-07
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 8 QHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESL 67
+ L G + DL +++I R R+ G+P Y ++R+ L K+F+DL D+E
Sbjct: 330 RDLHRPDGRVI----DLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTG--DEEVA 383
Query: 68 KLLSKIY-KSVDDVDMYTGGLSEKPLEG 94
L ++Y V+ VD+ G L+E G
Sbjct: 384 AELREVYGGDVEKVDLLVGLLAEPLPPG 411
Score = 40.3 bits (95), Expect = 4e-04
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 137 QHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESL 196
+ L G + DL +++I R R+ G+P Y +R+ L K+F+DL D+E
Sbjct: 330 RDLHRPDGRVI----DLAAIDILRDRERGVPRYNEFRRLLHLPPAKSFEDLTG--DEEVA 383
Query: 197 KLLSKIY 203
L ++Y
Sbjct: 384 AELREVY 390
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 45.0 bits (107), Expect = 1e-05
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 27 LNIQRGRDHGLPGYPKWRKYCGLSEPKTFDD-LKDHVDDESLKLLSKIYKSVDDVDMYTG 85
L I + R+ + ++RK+ GL +TF+D D E+L+LL Y D+V++Y G
Sbjct: 378 LGILQAREWNVATLNEFRKFFGLKPYETFEDINSDPEVAEALELL---YGHPDNVELYPG 434
Query: 86 GLSEK----PLEGGMLGP--TMTCLI---ANQFVRMKSGDRYWYETSEQPQAFT 130
++E G L P T++ I A VR GDR+ Y P T
Sbjct: 435 LVAEDAKPPMPPGSGLCPGYTISRAILSDAVALVR---GDRF-YTVDYNPNNLT 484
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 156 LNIQRGRDHGLPGYPRWRKYCGLSEPKTFDD-LKDHVDDESLKLL 199
L I + R+ + +RK+ GL +TF+D D E+L+LL
Sbjct: 378 LGILQAREWNVATLNEFRKFFGLKPYETFEDINSDPEVAEALELL 422
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 15 GSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIY 74
G P +D+ +L I R R+ G+ Y ++R+ + ++DL D D+E++++L ++Y
Sbjct: 464 GEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVY 521
Query: 75 -KSVDDVDMYTGGLSEKPLEG 94
V+ +D+ G ++EK ++G
Sbjct: 522 GDDVEKLDLLVGLMAEKKIKG 542
Score = 33.6 bits (77), Expect = 0.058
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 144 GSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIY 203
G P +D+ +L I R R+ G+ Y +R+ + ++DL D D+E++++L ++Y
Sbjct: 464 GEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVY 521
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of
proteins is found in bacteria. Proteins in this family
are typically between 397 and 1543 amino acids in
length. This family is the SidE protein in the Dot/Icm
pathway of Legionella pneumophila bacteria. There is
little literature describing the family.
Length = 1443
Score = 30.2 bits (68), Expect = 0.83
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 32 GRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEK 90
GRD + KY S D +V D L+ ++K +DV+ Y + +K
Sbjct: 336 GRDDEASDADNYAKYHEQSR----DAFLKYVKDNESTLIPDVFKDQEDVNFYAAVIEDK 390
>gnl|CDD|212033 cd10323, SLC-NCS1sbd, nucleobase-cation-symport-1 (NCS1)
transporters; solute-binding domain. NCS1s are
essential components of salvage pathways for nucleobases
and related metabolites; their known substrates include
allantoin, uracil, thiamine, and nicotinamide riboside.
This family includes Microbacterium liquefaciens Mhp1, a
transporter that mediates the uptake of indolyl methyl-
and benzyl-hydantoins as part of a metabolic salvage
pathway for their conversion to amino acids. It also
includes various Saccharomyces cerevisiae transporters:
Fcy21p (Purine-cytosine permease), vitamin B6
transporter Tpn1, nicotinamide riboside transporter 1
(Nrt1p, also called Thi71p), Dal4p (allantoin permease),
Fui1p (uridine permease), and Fur4p (uracil permease).
Mhp1 has 12 transmembrane (TM) helices (an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs11-12; TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). NCS1s belong to a superfamily
which also contains the solute carrier 5 family
sodium/glucose transporters (SLC5s), and SLC6
neurotransmitter transporters.
Length = 453
Score = 29.8 bits (67), Expect = 1.0
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 94 GGMLGPTMTCLIANQFV-----------RMKSGDRYWYETSEQPQAFTA 131
LGP +IA+ F+ G Y Y AF
Sbjct: 365 AAALGPLAGVMIADYFLVRRRYISLDDLYTAKGIGYTYWNGVNWVAFAV 413
>gnl|CDD|205721 pfam13543, KSR1-SAM, SAM like domain present in kinase suppressor
RAS 1.
Length = 129
Score = 28.5 bits (64), Expect = 1.2
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 6 LTQHLFEQVGSK-VPYGLDLVSLN---IQRGRDHGLPGYPK---WRKYCGLSEP------ 52
LTQ + +K V Y + +R R + L YPK W + GLS
Sbjct: 28 LTQQEIRALEAKLVKYFSQQLLAKSRVNERIRANELQPYPKLNQWLRVVGLSPETIQAIL 87
Query: 53 ---KTFDDLKDHVDDESLKLLSKIYKSVDDVDMYTGGLS 88
T + L + D E ++LS + S ++ T ++
Sbjct: 88 PRLLTLEQLLEMSDKELRQILSNVGASEEECRRLTAAMA 126
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 2 ETDGLTQHLFEQVGSKV-PYGLDLVSLNIQRGRDHGLPGYPK 42
+ D + + E V + GL+L S I+ D GY
Sbjct: 83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITD--TDGYLN 122
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 28.2 bits (63), Expect = 3.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 41 PKWRKYCGLSEPKTFDDLKDHVDDESLKLL--SKIYKSVDDVDMYTGGLSEKPLEG 94
G S+PK F + D +E L LL +K K++ + +G S +P +G
Sbjct: 34 AAPSPIKGKSKPKHFLHIDDFDKEEILGLLDRAKEVKAL----LKSGDRSFQPFKG 85
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 28.0 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 125 QPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHG 165
+P T GKG +G+ VP L L + +++RG+ HG
Sbjct: 222 EPDIVTMGKG--------IGNGVPVSLTLTNFDVERGK-HG 253
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 27.8 bits (62), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 94 GGMLGPTMTCLIANQFVRMK-----------SGDRYWYETSEQPQAFTA 131
GGMLGP + ++A+ FV M+ GD +Y+ AF+
Sbjct: 381 GGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSV 429
>gnl|CDD|217362 pfam03090, Replicase, Replicase family. This is a family of
bacterial plasmid DNA replication initiator proteins.
Pfam: PF01051 is a similar family. These RepA proteins
exist as monomers and dimers in equilibrium: monomers
bind directly to repeated DNA sequences and thus
activate replication; dimers repress repA transcription
by binding an inversely repeated DNA operator. Dimer
dissociation can occur spontaneously or be mediated by
Hsp70 chaperones.
Length = 137
Score = 26.9 bits (60), Expect = 4.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 167 PGYPRWRKYCGLSEPKTFDDLKDHVD 192
P +PRW+ P T D+L D +D
Sbjct: 112 PFHPRWQTQEIHPHPYTLDELADLLD 137
>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional.
Length = 333
Score = 27.0 bits (61), Expect = 7.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 164 HGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLL 199
GLPG WR+Y LSE V +E+L L+
Sbjct: 293 QGLPGARAWRRY--LSENAHKPGAGIEVLEEALALV 326
>gnl|CDD|188682 cd08727, RGS_RGS22_2, Regulator of G protein signaling domain
RGS_RGS22_2. The RGS (Regulator of G-protein Signaling)
domain found in the RGS22 protein, a member of the
RA/RGS subfamily of the RGS protein family. They are a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins regulate many
aspects of embryonic development such as glial
differentiation, embryonic axis formation, skeletal and
muscle development, cell migration during early
embryogenesis, as well as apoptosis, cell proliferation,
and modulation of cardiac development. RGS22 contains at
least 3 copies of the RGS domain in vertebrata and
exists in multiple splicing variants. RGS22 is
predominantly expressed in testis and believed to play
an important role in spermatogenesis.
Length = 116
Score = 26.2 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 162 RDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLL 199
+ G R LS P F+DL D ++ L LL
Sbjct: 66 HNIGCSVRKRKEIIKKLSPP--FEDLFDAAEEHILLLL 101
>gnl|CDD|218447 pfam05123, S_layer_N, S-layer like family, N-terminal region.
Length = 279
Score = 26.6 bits (59), Expect = 9.5
Identities = 4/46 (8%), Positives = 13/46 (28%)
Query: 57 DLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMT 102
D D+ ++ + + K + M+ ++
Sbjct: 168 DPSGWFDNSDDDAFEDLFVRITSDALNNTTDKLKVNKDEMVYASLA 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.139 0.428
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,422,586
Number of extensions: 954556
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 40
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)