RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9903
(204 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 153 bits (388), Expect = 4e-44
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 3/135 (2%)
Query: 3 TDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV 62
T + + + +I + R+ ++RK L +F++L
Sbjct: 396 TRQIAGRVAGGRNVP-IAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG-- 452
Query: 63 DDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYET 122
+ E L +Y +D +++Y L EKP + G TM L A ++ G+
Sbjct: 453 EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQ 512
Query: 123 SEQPQAFTAGKGLTQ 137
+P F G
Sbjct: 513 YWKPSTFGGEVGFKI 527
Score = 74.4 bits (182), Expect = 7e-16
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Query: 108 QFVRMKSGDRYWYETSEQPQAFTAGKGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLP 167
F + + E + + + + + +I + R+
Sbjct: 372 SFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVP-IAVQAVAKASIDQSREMKYQ 430
Query: 168 GYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK 204
+RK L +F++L + E L +Y
Sbjct: 431 SLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYS 465
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 151 bits (382), Expect = 3e-43
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 4 DGLTQHLFEQVGSKV-------PYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFD 56
+ L Q ++ + L + I+ R L + ++RK G+ +F
Sbjct: 389 EALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQ 448
Query: 57 DLKDHVDDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGD 116
+L + E L ++Y +D ++ Y G L EK + G +M + A ++ G+
Sbjct: 449 ELTG--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGN 506
Query: 117 RYWYETSEQPQAFTAGKGLTQ 137
+ F G
Sbjct: 507 PICSPEYWKASTFGGEVGFNL 527
Score = 69.7 bits (170), Expect = 3e-14
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 148 PYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYK 204
+ L + I+ R L + +RK G+ +F +L + E L ++Y
Sbjct: 411 HHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYG 465
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 136 bits (343), Expect = 3e-38
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query: 3 TDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV 62
D + + LFEQV GLDL +LN+QR RDHGLPGY WR++CGL +P+T L +
Sbjct: 287 VDEIRERLFEQVM---RIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVL 343
Query: 63 DDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYE 121
+ L + L + Y + +++D++ GG+SE G +GP + C+I QF +++ GDR+W+E
Sbjct: 344 RNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWE 403
Query: 122 TSE 124
Sbjct: 404 NEG 406
Score = 70.6 bits (172), Expect = 1e-14
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
+ + LFEQV GLDL +LN+QR RDHGLPGY WR++CGL +P+T L + +
Sbjct: 290 IRERLFEQVM---RIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNL 346
Query: 195 SL-KLLSKIY 203
L + L + Y
Sbjct: 347 KLARKLMEQY 356
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 133 bits (335), Expect = 1e-36
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 3 TDGLTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHV 62
T L LF+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ +
Sbjct: 414 TSELRNKLFQPTHK--IHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVL 471
Query: 63 DDESL-KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYWYE 121
++ L K L +YK+ D++D++ GG +E +E G +GP + CL+ QF +++ GDR+W+E
Sbjct: 472 KNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWE 531
Query: 122 TSE 124
Sbjct: 532 NPG 534
Score = 73.1 bits (178), Expect = 2e-15
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 135 LTQHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDLKDHVDDE 194
L LF+ +G DL ++N+QR RDHG+PGY WR +CGLS+PKT L+ + ++
Sbjct: 417 LRNKLFQPTHK--IHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNK 474
Query: 195 SL-KLLSKIYK 204
L K L +YK
Sbjct: 475 ILAKKLMDLYK 485
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.044
Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 58/177 (32%)
Query: 8 QHLFEQVGSKVPYGLDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLK-DHVDDES 66
H + G + LD+V N H G K ++ + E + + + + D
Sbjct: 1651 NHFKDTYGFSI---LDIVINNPVNLTIH--FGGEKGKR---IRE--NYSAMIFETIVDGK 1700
Query: 67 LKLLSKIYKSVDDVDMYTGGLSEKPLEG--GMLGPT-------MTCLIANQFVRMKSGDR 117
LK KI+K +++ + G+L T A F +KS
Sbjct: 1701 LKTE-KIFKEINEH------STSYTFRSEKGLLSATQFTQPALTLMEKA-AFEDLKS--- 1749
Query: 118 YWYETSEQPQAFTAGKGLTQH-LFEQVGSKVPYG-L----------DLVSLNIQRGR 162
+ A AG H L E Y L LV + RG
Sbjct: 1750 ---KGLIPADATFAG-----HSLGE-------YAALASLADVMSIESLVEVVFYRGM 1791
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.23
Identities = 26/208 (12%), Positives = 51/208 (24%), Gaps = 77/208 (37%)
Query: 63 DDESLKLLSKIYKSVDDVDMYTGGLSEKPLEGGMLGPTMTCLIANQFVRMKSGDRYW--Y 120
DE LL K +D L P E P +IA + W
Sbjct: 300 PDEVKSLLLKY------LDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 121 ETSEQPQAFTAG-KGLT----QHLFEQVG-----SKVPYGL--------------DLV-- 154
+ + L + +F+++ + +P L +V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 155 ----SLNIQRGRD---HGLPG----------------------YPRWRKYCGLSEPKTFD 185
SL +++ +P Y + + +
Sbjct: 411 LHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 186 D------LKDHVD----DESLKLLSKIY 203
D + H+ E + L ++
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 30.6 bits (68), Expect = 0.37
Identities = 36/228 (15%), Positives = 58/228 (25%), Gaps = 71/228 (31%)
Query: 22 LDLVSLNIQRGRDHGLPGYPKWRKYCGLSEPKTFDDLKDHVDDESLKLLSKIYKSVDDVD 81
+ QR R + + KY +S + + L+ + L+L + +V
Sbjct: 107 MMTRMYIEQRDRLYNDN--QVFAKY-NVSRLQPYLKLRQAL----LEL-----RPAKNVL 154
Query: 82 MYTGGLSEKPLEGGMLGPTMTCLIAN-----QFVRMKSGDRYWYETSEQPQAFTAGKGLT 136
+ G+LG T + + + +W T + L
Sbjct: 155 ID-----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML- 202
Query: 137 QHLFEQVGSKVPYGLDL---VSLNIQRGRDH-----GLPGYPR-------------WRKY 175
Q L Q+ D + L I + Y W +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 176 ---C-------------GLSEPKTFDDLKDHV-----DDESLKLLSKI 202
C LS T DH DE LL K
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Score = 26.7 bits (58), Expect = 6.1
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 60/165 (36%)
Query: 42 KWRKYCGLSEPKTFDDLKDHVDDE-SL--KLLSKIYKSVDDVDMYTGGLSEKPLEGGMLG 98
K K +S P + +LK +++E +L ++ Y D + L L
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPYL------ 469
Query: 99 PTMTCLIANQFVRMKSGDRYWY-------ETSEQPQAFTAGKGLTQHLFEQVGSKVPYGL 151
D+Y+Y + E P+ T LF V + L
Sbjct: 470 -----------------DQYFYSHIGHHLKNIEHPERMT--------LFRMV-----F-L 498
Query: 152 DLVSLNIQRGRDHGLPGYPRWRKYCGLSEPKTFDDL---KDHVDD 193
D L Q+ R W + T L K ++ D
Sbjct: 499 DFRFLE-QKIRHDSTA----WNASGSILN--TLQQLKFYKPYICD 536
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 26.6 bits (58), Expect = 4.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 46 YCGLSEPKTFDDLKDHVDDE 65
CG + + F LK H+ +E
Sbjct: 174 RCGETFGRHFTKLKAHLQEE 193
Score = 26.6 bits (58), Expect = 4.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 175 YCGLSEPKTFDDLKDHVDDE 194
CG + + F LK H+ +E
Sbjct: 174 RCGETFGRHFTKLKAHLQEE 193
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
transporter extracellular solute bindi protein,
D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
3oo7_A 3oo9_A 3ooa_A
Length = 415
Score = 26.7 bits (59), Expect = 5.7
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 48 GLSEPKTFDDLKDHVD 63
G P +++
Sbjct: 155 GYEVPASWEAFIALAR 170
Score = 26.7 bits (59), Expect = 5.7
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 177 GLSEPKTFDDLKDHVD 192
G P +++
Sbjct: 155 GYEVPASWEAFIALAR 170
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
protein, transport protein; 1.04A {Streptococcus
pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Length = 401
Score = 26.3 bits (58), Expect = 8.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 48 GLSEPKTFDDLKD 60
GL P+T+D+ +
Sbjct: 142 GLKVPETWDEFEQ 154
Score = 26.3 bits (58), Expect = 8.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 177 GLSEPKTFDDLKD 189
GL P+T+D+ +
Sbjct: 142 GLKVPETWDEFEQ 154
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 25.9 bits (57), Expect = 9.8
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 48 GLSEPKTFDDLKDHVD 63
G++ P+T+D
Sbjct: 135 GVNPPRTWDKFLATCQ 150
Score = 25.9 bits (57), Expect = 9.8
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 177 GLSEPKTFDDLKDHVD 192
G++ P+T+D
Sbjct: 135 GVNPPRTWDKFLATCQ 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.139 0.428
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,141,408
Number of extensions: 177136
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 26
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)