BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9904
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/646 (57%), Positives = 436/646 (67%), Gaps = 124/646 (19%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAXXXXXXXXXXXXXXXXXXXXXX 64
++IDIILLKGDVEEDE IPD ++DIRPRFH+S+ +
Sbjct: 311 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 370
Query: 65 XXXXXXXXWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
WNLRKCSAAA L VL + ++ L H
Sbjct: 371 SD------WNLRKCSAAA------------LDVLANVYRDELLPH--------------- 397
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + L +
Sbjct: 398 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 426
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 427 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 484
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 485 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 544
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 545 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 604
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q M N+ P+Q++APDKDFMIVALDLLSGLAEGL +I+ LV+
Sbjct: 605 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 664
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 665 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 724
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 725 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 784
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW
Sbjct: 785 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 844
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 845 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 890
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/646 (56%), Positives = 427/646 (66%), Gaps = 149/646 (23%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAXXXXXXXXXXXXXXXXXXXXXX 64
++IDIILLKGDVEEDE IPD ++DI
Sbjct: 311 SDIDIILLKGDVEEDETIPDSEQDIGGSGGSGD--------------------------- 343
Query: 65 XXXXXXXXWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
WNLRKCSAAA L VL + ++ L H
Sbjct: 344 ----TISDWNLRKCSAAA------------LDVLANVYRDELLPH--------------- 372
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + L +
Sbjct: 373 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 401
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 402 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 459
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 460 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 519
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 520 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 579
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q M N+ P+Q++APDKDFMIVALDLLSGLAEGL +I+ LV+
Sbjct: 580 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 639
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 640 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 699
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 700 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 759
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW
Sbjct: 760 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 819
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 820 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 865
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/646 (55%), Positives = 419/646 (64%), Gaps = 124/646 (19%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAXXXXXXXXXXXXXXXXXXXXXX 64
++IDIILLKGDVEEDE IPD ++DIRPRFH+S+ +
Sbjct: 311 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 370
Query: 65 XXXXXXXXWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
WNLRKCSAAA L VL + ++ L H
Sbjct: 371 SD------WNLRKCSAAA------------LDVLANVYRDELLPH--------------- 397
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + S + L
Sbjct: 398 -------ILPLLKELL-----------------------FHHEWVVKE---SGILVLGAI 424
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GC G +P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPL TE
Sbjct: 425 AEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTE 484
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 485 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 544
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI L PPLIQKWN LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 545 IGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKDEDKDLFPLLECLSSVATALQSGFLPY 604
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q N+ P+Q++APDKDF IVALDLLSGLAEGL +I+ LV+
Sbjct: 605 CEPVYQRCVNLVQKTLAQAXLNNAQPDQYEAPDKDFXIVALDLLSGLAEGLGGNIEQLVA 664
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L YQC QD PEVRQSSFALLGDLTKACF HV PCI+DF PILG NLNP+ ISV
Sbjct: 665 RSNILTLXYQCXQDKXPEVRQSSFALLGDLTKACFQHVKPCIADFXPILGTNLNPEFISV 724
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS++ G + + Y+P V++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 725 CNNATWAIGEISIQXGIEXQPYIPXVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 784
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP C+SLRNIRDNEEKDSAFRG+C I+VNP GV+Q+FIFFCDAVASW
Sbjct: 785 EVAPXLQQFIRPWCTSLRNIRDNEEKDSAFRGICTXISVNPSGVIQDFIFFCDAVASWIN 844
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++ F KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 845 PKDDLRDXFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 890
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/541 (61%), Positives = 398/541 (73%), Gaps = 80/541 (14%)
Query: 110 DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169
DW +++ AL +A + ++PH+ L+ L+ + WV
Sbjct: 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF-------------------HHEWV 374
Query: 170 VSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229
V + L + GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWV
Sbjct: 375 VKESGILVLGAIAE---GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431
Query: 230 VSQPHDSYLKPLMTE--------------------------------------------- 244
VSQP D+YLKPLMTE
Sbjct: 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491
Query: 245 -----HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLEC 299
HKNLLILYDAIGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLEC
Sbjct: 492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLEC 551
Query: 300 LSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLS 359
LSSVATALQ+GFLPYCEPVY+RCV+L+++TL Q M N+ P+Q++APDKDFMIVALDLLS
Sbjct: 552 LSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611
Query: 360 GLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDF 419
GLAEGL +I+ LV+ SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DF
Sbjct: 612 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 671
Query: 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLE 479
MPILG NLNP+ ISVCNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLE
Sbjct: 672 MPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLE 731
Query: 480 NTAITIGRLGYVCPHDVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVV 531
NTAITIGRLGYVCP +VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+
Sbjct: 732 NTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 791
Query: 532 QEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYG 591
Q+FIFFCDAVASW PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YG
Sbjct: 792 QDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 851
Query: 592 V 592
V
Sbjct: 852 V 852
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 98/427 (22%), Positives = 181/427 (42%), Gaps = 64/427 (14%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +L+ ++++P +LP +KE + + DW +++ ++A G+I EG N
Sbjct: 342 WNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMN 190
+ P + + +P LI + D +VR T WT+ R + +D YL PL L C
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEAAINDVYLAPL----LQC-- 455
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKPLMT--EHK 246
LI LS + + + CW S + + + D +P
Sbjct: 456 ------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 247 NLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFP--------L 296
LI+ + T GH L Y SL+ I+K+ KD +P +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPAVQKTTLVI 554
Query: 297 LECLSSVATALQAGFLPYCEPV-YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
+E L V +++ + + + SL+ TL + Q+ + D M L
Sbjct: 555 MERLQQV-LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV-VMASLL 612
Query: 356 DLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------EVRQSSFA 399
+ A + D+L++ S ++ +L + M+ P +V ++
Sbjct: 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 672
Query: 400 LLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGEDMRRYV 457
L+GDL +A S++ P + M +L +NL + + SV G+I++ +G + ++Y+
Sbjct: 673 LVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732
Query: 458 PMVINQL 464
+V+N L
Sbjct: 733 EVVLNTL 739
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 299 CLSSVA------TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352
CL++V ALQ+ LP+C+ V + L+E N+++ S P+ F
Sbjct: 667 CLAAVGLVGDLCRALQSNILPFCDEVMQL---LLENLGNENVHRSVKPQILSV----FGD 719
Query: 353 VALDLLSGLAEGLDMHIDSL--VSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT---KA 407
+AL + + L++ +++L S + + + M D + E+R+S + K
Sbjct: 720 IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDFD-MVDYLNELRESCLEAYTGIVQGLKG 778
Query: 408 CFSHVHPCISDFMP-----------ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456
+VHP + P I G + D + C A IG++ G+D+ +
Sbjct: 779 DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC--AAGLIGDLCTAFGKDVLKL 836
Query: 457 V---PMVINQLIIIINRPNTPKT 476
V PM I++L+ R T K
Sbjct: 837 VEARPM-IHELLTEGRRSKTNKA 858
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 179/427 (41%), Gaps = 64/427 (14%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMN 190
+ P + + +P LI + D +VR WT+ R + +D YL PL L C
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL----LQC-- 455
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKPLM--TEHK 246
LI LS + + + CW S + + + D +P
Sbjct: 456 ------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 247 NLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFP--------L 296
LI+ + T GH L Y SL+ I+K+ KD +P +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPAVQKTTLVI 554
Query: 297 LECLSSVATALQAGFLPYCEPV-YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
+E L V +++ + + + SL+ TL + Q+ + D M L
Sbjct: 555 MERLQQV-LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV-VMASLL 612
Query: 356 DLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------EVRQSSFA 399
+ A + D+L++ S ++ +L + M+ P +V ++
Sbjct: 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 672
Query: 400 LLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGEDMRRYV 457
L+GDL +A S++ P + M +L +NL + + SV G+I++ +G + ++Y+
Sbjct: 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732
Query: 458 PMVINQL 464
+V+N L
Sbjct: 733 EVVLNTL 739
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 299 CLSSVA------TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352
CL++V ALQ+ +P+C+ V + L+E N+++ S P+ F
Sbjct: 667 CLAAVGLVGDLCRALQSNIIPFCDEVMQL---LLENLGNENVHRSVKPQILSV----FGD 719
Query: 353 VALDLLSGLAEGLDMHIDSL--VSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT---KA 407
+AL + + L++ +++L S + + Y M D + E+R+S + K
Sbjct: 720 IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD-MVDYLNELRESCLEAYTGIVQGLKG 778
Query: 408 CFSHVHPCISDFMP-----------ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456
+VHP + P I G + D + C A IG++ G+D+ +
Sbjct: 779 DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC--AAGLIGDLCTAFGKDVLKL 836
Query: 457 V---PMVINQLIIIINRPNTPKT 476
V PM I++L+ R T K
Sbjct: 837 VEARPM-IHELLTEGRRSKTNKA 858
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 179/427 (41%), Gaps = 64/427 (14%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 217 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 276
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMN 190
+ P + + +P LI + D +VR WT+ R + +D YL PL L C
Sbjct: 277 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL----LQC-- 330
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKPLM--TEHK 246
LI LS + + + CW S + + + D +P
Sbjct: 331 ------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEPATYCLSSS 377
Query: 247 NLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFP--------L 296
LI+ + T GH L Y SL+ I+K+ KD +P +
Sbjct: 378 FELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPAVQKTTLVI 429
Query: 297 LECLSSVATALQAGFLPYCEPV-YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
+E L V +++ + + + SL+ TL + Q+ + D M L
Sbjct: 430 MERLQQV-LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV-VMASLL 487
Query: 356 DLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------EVRQSSFA 399
+ A + D+L++ S ++ +L + M+ P +V ++
Sbjct: 488 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 547
Query: 400 LLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGEDMRRYV 457
L+GDL +A S++ P + M +L +NL + + SV G+I++ +G + ++Y+
Sbjct: 548 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 607
Query: 458 PMVINQL 464
+V+N L
Sbjct: 608 EVVLNTL 614
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 299 CLSSVA------TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352
CL++V ALQ+ +P+C+ V + L+E N+++ S P+ F
Sbjct: 542 CLAAVGLVGDLCRALQSNIIPFCDEVMQL---LLENLGNENVHRSVKPQILSV----FGD 594
Query: 353 VALDLLSGLAEGLDMHIDSL--VSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT---KA 407
+AL + + L++ +++L S + + Y M D + E+R+S + K
Sbjct: 595 IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD-MVDYLNELRESCLEAYTGIVQGLKG 653
Query: 408 CFSHVHPCISDFMP-----------ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456
+VHP + P I G + D + C A IG++ G+D+ +
Sbjct: 654 DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC--AAGLIGDLCTAFGKDVLKL 711
Query: 457 V---PMVINQLIIIINRPNTPKT 476
V PM I++L+ R T K
Sbjct: 712 VEARPM-IHELLTEGRRSKTNKA 733
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 179/427 (41%), Gaps = 64/427 (14%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMN 190
+ P + + +P LI + D +VR WT+ R + +D YL PL L C
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL----LQC-- 455
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKPLMT--EHK 246
LI LS + + + CW S + + + D +P
Sbjct: 456 ------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 247 NLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFP--------L 296
LI+ + T GH L Y SL+ I+K+ KD +P +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPAVQKTTLVI 554
Query: 297 LECLSSVATALQAGFLPYCEPV-YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
+E L V +++ + + + SL+ TL + Q+ + D M L
Sbjct: 555 MERLQQV-LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV-VMASLL 612
Query: 356 DLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------EVRQSSFA 399
+ A + D+L++ S ++ +L + M+ P +V ++
Sbjct: 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVG 672
Query: 400 LLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGEDMRRYV 457
L+GDL +A S++ P + M +L +NL + + SV G+I++ +G + ++Y+
Sbjct: 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732
Query: 458 PMVINQL 464
+V+N L
Sbjct: 733 EVVLNTL 739
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 299 CLSSVA------TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352
CL++V ALQ+ +P+C+ V + L+E N+++ S P+ F
Sbjct: 667 CLAAVGLVGDLCRALQSNIIPFCDEVMQL---LLENLGNENVHRSVKPQILSV----FGD 719
Query: 353 VALDLLSGLAEGLDMHIDSL--VSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT---KA 407
+AL + + L++ +++L S + + Y M D + E+R+S + K
Sbjct: 720 IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD-MVDYLNELRESCLEAYTGIVQGLKG 778
Query: 408 CFSHVHPCISDFMP-----------ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456
+VHP + P I G + D + C A IG++ G+D+ +
Sbjct: 779 DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC--AAGLIGDLCTAFGKDVLKL 836
Query: 457 V---PMVINQLIIIINRPNTPKTLLENTAITIGR 487
V PM I++L+ R T N A T+ R
Sbjct: 837 VEARPM-IHELLTEGRRSKT------NKAKTLAR 863
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLM 182
+ P + + +P LI + D +VR WT+ R + +D YL PL+
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLM 182
+ P + + +P LI + D +VR WT+ R + +D YL PL+
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +L+ ++++P +LP +KE + + DW +++ + A G+I EG N
Sbjct: 348 WNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQ 407
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKP 180
+ P + + P LI D +VR T WT+ R + +D YL P
Sbjct: 408 LKPLVIQAXPTLIELXKDPSVVVRDTTAWTVGRICELLPEAAINDVYLVP 457
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NG 131
WN K + L +LA ++++P +LP +KE + + DW +++ ++A G I EG +
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164
+ P + + +P LI + D +VR WT+ R
Sbjct: 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 434
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN-G 131
WN+ + A L + A +L +L +++ + +W +E+ ++A G+I +G
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170
++++ +P ++ ++D+ V+ T W + R + V
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 398 FALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
F + L + + F P L + LN V A I +IS L ED RRY
Sbjct: 619 FYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678
Query: 458 PMVINQLIIIINRPNTPKTL-------LENTAITIGRLGYVCPHDVAPLCSSLRNIR 507
++N L +I+ PN + L + A IG +D+ LC + +N +
Sbjct: 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN-G 131
WN+ + A L + A +L +L +++ + +W +E+ ++A G+I +G
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 132 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170
++++ +P ++ ++D+ V+ T W + R + V
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 398 FALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
F + L + + F P L + LN V A I +IS L ED RRY
Sbjct: 619 FYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678
Query: 458 PMVINQLIIIINRPNTPKTL-------LENTAITIGRLGYVCPHDVAPLCSSLRNIR 507
++N L +I+ PN + L + A IG +D+ LC + +N +
Sbjct: 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 147
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S + + P L +L+ + D + LV A
Sbjct: 148 AT-WTLSNLCRGKKPQPDWSVVSQAL-----------PTLAKLIYSM-----DTETLVDA 190
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 191 --CWAISYLS 198
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 235 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 277
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 278 --CWAISYLS 285
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 147
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S + + P L +L+ + D + LV A
Sbjct: 148 AT-WTLSNLCRGKKPQPDWSVVSQAL-----------PTLAKLIYSM-----DTETLVDA 190
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 191 --CWAISYLS 198
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 148
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 149 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 191
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 192 --CWAISYLS 199
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 146
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 147 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 189
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 190 --CWAISYLS 197
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 146
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 147 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 189
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 190 --CWAISYLS 197
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 148
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 149 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 191
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 192 --CWAISYLS 199
>pdb|2PO4|A Chain A, X-Ray Crystal Structure Of Polymerase Domain Of The
Bacteriophage N4 Virion Rna Polymerase
Length = 1104
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 120 ALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179
A+ + E G +P V L T L D+K+ V L YS ++V++ +++
Sbjct: 498 AIDMMVEFNTTGSLPE--NAVDVLNTALGDRKSFV---ALMALMEYSRYLVAEDKSAFVT 552
Query: 180 PLMTEMLGCMNG 191
PL E G NG
Sbjct: 553 PLYVEADGVTNG 564
>pdb|3Q22|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q22|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q23|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q23|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q0A|A Chain A, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|3Q0A|B Chain B, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|4FF1|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF1|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
Length = 1118
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 120 ALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179
A+ + E G +P V L T L D+K+ V L YS ++V++ +++
Sbjct: 510 AIDMMVEFNTTGSLPE--NAVDVLNTALGDRKSFV---ALMALMEYSRYLVAEDKSAFVT 564
Query: 180 PLMTEMLGCMNG 191
PL E G NG
Sbjct: 565 PLYVEADGVTNG 576
>pdb|3C2P|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C2P|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C3L|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C3L|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C46|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3C46|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3Q24|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
pdb|3Q24|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
Length = 1117
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 120 ALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179
A+ + E G +P V L T L D+K+ V L YS ++V++ +++
Sbjct: 510 AIDMMVEFNTTGSLPE--NAVDVLNTALGDRKSFV---ALMALMEYSRYLVAEDKSAFVT 564
Query: 180 PLMTEMLGCMNG 191
PL E G NG
Sbjct: 565 PLYVEADGVTNG 576
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 364 GLD-MHIDSL----VSNSNIMHLLYQCMQDP----MPEVRQSSFALLGDLTKACFSHVHP 414
G+D M +DSL ++N + L ++ P M EV ++ + +GD T
Sbjct: 45 GMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGG 104
Query: 415 CISDFMPILGQNLNPDLIS-----VCNNATWAIGEISVKLGEDMR 454
+ ++ QN++P +IS A I EIS K+G D +
Sbjct: 105 LLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEK 149
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 199 LVPFLITCLSD-----KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT-----EHKNL 248
LVPFL++ LS +K V A+T +T +V H ++PLM + K +
Sbjct: 310 LVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKII 369
Query: 249 LILYDAIGTLADSVGHHLNKPEYISLLM 276
L++ DAI + + L + E +S+++
Sbjct: 370 LVILDAISNIFQA-AEKLGETEKLSIMI 396
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 252 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 370
Query: 197 NE-----LVPFLITCLSD-----KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS +KA AIT +T +V H ++PLM
Sbjct: 371 QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 431 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 464
>pdb|1BMV|1 Chain 1, Protein-Rna Interactions In An Icosahedral Virus At 3.0
Angstroms Resolution
Length = 198
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 324 SLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID--SLVSNSNIMHL 381
S+ +QT+ MA + P FD+ + F ++DLL G +D D +LV NS I +L
Sbjct: 1 SISQQTVWNQMATVRTPLNFDSSKQSFCQFSVDLLGG-GISVDKTGDWITLVQNSPISNL 59
Query: 382 L 382
L
Sbjct: 60 L 60
>pdb|1PGL|1 Chain 1, Bean Pod Mottle Virus (Bpmv), Middle Component
pdb|1PGW|1 Chain 1, Bean Pod Mottle Virus (Bpmv), Top Component
Length = 185
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 324 SLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID--SLVSNSNIMHL 381
S+ +QT+ MA + P FD+ + F ++DLL G +D D +LV NS I +L
Sbjct: 1 SISQQTVWNQMATVRTPLNFDSSKQSFCQFSVDLLGG-GISVDKTGDWITLVQNSPISNL 59
Query: 382 L 382
L
Sbjct: 60 L 60
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 365 LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILG 424
L ID V+NS + LL+ +DP E+ + G +T I D M
Sbjct: 31 LGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM------AIYDTM---- 80
Query: 425 QNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
Q + P + ++C ++G + GE +RY
Sbjct: 81 QFIKPKVSTICIGMAASMGAFLLAAGEKGKRYA 113
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 472 NTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVV 531
NT KT + T +G G P +V L +L+NI DN E D G A+I +
Sbjct: 4 NTLKTSYQKTPYKLGGNG---PRNVGVLTEALQNIDDNLESD--IYGNGAVIEDFETKIA 58
Query: 532 -----QEFIFFCDAVAS-------WSTPKEDLKEMFHKILH 560
Q +FF + W+ KE+ + +H + H
Sbjct: 59 KILGKQSAVFFPSGTXAQQIALRIWADRKENRRVAYHPLSH 99
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428
ID V+NS + LL+ +DP E+ + G +T I D M Q +
Sbjct: 35 IDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM------AIYDTM----QFIK 84
Query: 429 PDLISVCNNATWAIGEISVKLGEDMRRYV 457
P + ++C ++G + GE +RY
Sbjct: 85 PKVSTICIGMAASMGAFLLAAGEKGKRYA 113
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 351
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 412 AKDTKIIQVILDAISNIFQAA-EKLGETEKLSIMI 445
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 219 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 278
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 279 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 337
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 338 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 397
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 398 AKDTKIIQVILDAISNIFQAA-EKLGETEKLSIMI 431
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 209 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 268
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 269 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 327
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 328 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 387
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 388 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 421
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 183 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 242
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 301
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 302 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 361
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 362 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 395
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 351
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 412 AKDTKIIQVILDAISNIFQAA-EKLGETEKLSIMI 445
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 189 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 248
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 249 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 307
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 308 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 368 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 401
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 351
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 412 AKDTKIIQVILDAISNIFQAA-EKLGETEKLSIMI 445
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 217 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 276
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 277 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 335
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 336 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 395
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 396 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 429
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 178 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 237
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 238 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 296
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 297 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 356
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 357 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 390
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 183 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 242
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 301
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 302 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 361
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 362 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 395
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 182 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 241
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 242 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 300
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 301 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 360
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 361 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 394
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 436 NNATWAIGEISVKLGEDM-RRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492
N +WAIG IS + ED +R+V VI L+ + + K +N A+ + YV
Sbjct: 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL----SVKKRGKDNKAVVASDIMYVV 524
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 178 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 237
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 238 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 296
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 297 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 356
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 357 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 390
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 182 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 241
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 242 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 300
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 301 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 360
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 361 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 394
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEG--------CMNGMVPHLNEL-----VPFLI 144
+LP L L H+D E+ A+ + +G G+VP L +L +P +
Sbjct: 183 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 242
Query: 145 TCLSDKKALV--------RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
L +V + I L+ + +++ P + K M G +
Sbjct: 243 PALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQI 301
Query: 197 NE-----LVPFLITCLSDKKALVRAITCWTLSRYS-----HWVVSQPHDSYLKPLMT--- 243
+ LVPFL+ LS + W ++ Y+ +V H ++PLM
Sbjct: 302 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 361
Query: 244 --EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276
+ K + ++ DAI + + L + E +S+++
Sbjct: 362 AKDTKIIQVILDAISNIFQA-AEKLGETEKLSIMI 395
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428
ID V+NS + LL+ +DP E+ + G +T I D M Q +
Sbjct: 36 IDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM------AIYDTM----QFIK 85
Query: 429 PDLISVCNNATWAIGEISVKLGEDMRRY 456
P + ++C ++G + GE +RY
Sbjct: 86 PKVSTICIGMAASMGAFLLAAGEKGKRY 113
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428
ID V+NS + LL+ +DP E+ + G +T I D M Q +
Sbjct: 35 IDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM------AIYDTM----QFIK 84
Query: 429 PDLISVCNNATWAIGEISVKLGEDMRRY 456
P + ++C ++G + GE +RY
Sbjct: 85 PKVSTICIGMAASMGAFLLAAGEKGKRY 112
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 436 NNATWAIGEISVKLGEDM-RRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492
N +WAIG IS + ED +R+V VI L+ + K+ +N A+ + YV
Sbjct: 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC----VKKSGKDNEAVVASDIMYVV 524
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,113,339
Number of Sequences: 62578
Number of extensions: 678156
Number of successful extensions: 1773
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 190
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)