BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9904
(592 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2
Length = 898
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/646 (58%), Positives = 449/646 (69%), Gaps = 124/646 (19%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
++IDIILLKGDVEEDE IPD ++DIRPRFH+S+ + E+ E+ ++ ++D
Sbjct: 319 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHEEDGIEEEDDDDDEIDDD--- 375
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
++SDWNLRKCSAAA L VL + ++ L H
Sbjct: 376 ---DTISDWNLRKCSAAA------------LDVLANVYRDELLPH--------------- 405
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + L +
Sbjct: 406 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 434
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 435 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 492
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 493 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 552
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 553 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q M N+ PEQ++APDKDFMIVALDLLSGLAEGL +I+ LV+
Sbjct: 613 CEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 672
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 673 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 732
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 733 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 792
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW
Sbjct: 793 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 852
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 853 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2
Length = 898
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/646 (58%), Positives = 449/646 (69%), Gaps = 124/646 (19%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
++IDIILLKGDVEEDE IPD ++DIRPRFH+S+ + E+ E+ ++ ++D
Sbjct: 319 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDD--- 375
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
++SDWNLRKCSAAA L VL + ++ L H
Sbjct: 376 ---DTISDWNLRKCSAAA------------LDVLANVYRDELLPH--------------- 405
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + L +
Sbjct: 406 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 434
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 435 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 492
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 493 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 552
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 553 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q M N+ P+Q++APDKDFMIVALDLLSGLAEGL +I+ LV+
Sbjct: 613 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 672
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 673 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 732
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 733 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 792
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW
Sbjct: 793 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 852
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 853 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2
Length = 898
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/646 (58%), Positives = 448/646 (69%), Gaps = 124/646 (19%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
++IDIILLKGDVEEDE IPD ++DIRPRFH+S+ + E+ E ++ ++D
Sbjct: 319 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEEDDDDEIDDD--- 375
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
++SDWNLRKCSAAA L VL + ++ L H
Sbjct: 376 ---DTISDWNLRKCSAAA------------LDVLANVYRDELLPH--------------- 405
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L EL+ + WVV + L +
Sbjct: 406 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 434
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 435 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 492
Query: 245 --------------------------------------------------HKNLLILYDA 254
HKNLLILYDA
Sbjct: 493 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 552
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 553 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
CEPVY+RCV+L+++TL Q M N+ P+Q++APDKDFMIVALDLLSGLAEGL +I+ LV+
Sbjct: 613 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 672
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 673 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 732
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP
Sbjct: 733 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 792
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
+VAP+ C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW
Sbjct: 793 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 852
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
PK+DL++MF KILHGF+ QVGDENW+RF+DQFP L++RL+A YGV
Sbjct: 853 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1
Length = 887
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/464 (68%), Positives = 368/464 (79%), Gaps = 58/464 (12%)
Query: 187 GCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE-- 244
GCM GMVP+L EL+P LI CLSDKKALVR+I CWTLSRY+HWVVSQP D +LKPLMTE
Sbjct: 424 GCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELL 483
Query: 245 ------------------------------------------------HKNLLILYDAIG 256
HKNLLILYDAIG
Sbjct: 484 KRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIG 543
Query: 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCE 316
TLADSVGHHLN+PEYI LMPPLIQKWN LKDEDKDLFPLLECLSSVATALQ+GFLPYCE
Sbjct: 544 TLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCE 603
Query: 317 PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNS 376
PVY+RCV+L+++TL Q M +Q+PEQ++APDKDFMIVALDLLSGLAEGL H++ LV+ S
Sbjct: 604 PVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARS 663
Query: 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCN 436
NIM LL+QCMQD MPEVRQSSFALLGDLTKACF HV PCI++FMPILG NLNP+ ISVCN
Sbjct: 664 NIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCN 723
Query: 437 NATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDV 496
NATWAIGEI +++G +M+ YV MV+N L+ IINRPNTPKTLLENTAITIGRLGYVCP +V
Sbjct: 724 NATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 783
Query: 497 APL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPK 548
AP+ C+SLRNIRDNEEKDSAFRG+C MI VNPGGVVQ+FIFFCDAVASW +PK
Sbjct: 784 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK 843
Query: 549 EDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
+DL++MF+KILHGF+ QVG+ENWQ+F++QFP L++RL+A YGV
Sbjct: 844 DDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV 887
>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3
Length = 897
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/474 (67%), Positives = 368/474 (77%), Gaps = 68/474 (14%)
Query: 187 GCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE-- 244
GCM GMVP+L EL+P LI CLSDKKALVR+I CWTLSRY+HWVVSQP D +LKPLMTE
Sbjct: 424 GCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELL 483
Query: 245 ------------------------------------------------HKNLLILYDAIG 256
HKNLLILYDAIG
Sbjct: 484 KRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIG 543
Query: 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCE 316
TLADSVGHHLN+PEYI LMPPLIQKWN LKDEDKDLFPLLECLSSVATALQ+GFLPYCE
Sbjct: 544 TLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCE 603
Query: 317 PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNS 376
PVY+RCV+L+++TL Q M +Q+PEQ++APDKDFMIVALDLLSGLAEGL H++ LV+ S
Sbjct: 604 PVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARS 663
Query: 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCN 436
NIM LL+QCMQD MPEVRQSSFALLGDLTKACF HV PCI++FMPILG NLNP+ ISVCN
Sbjct: 664 NIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCN 723
Query: 437 NATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENT----------AITIG 486
NATWAIGEI +++G +M+ YV MV+N L+ IINRPNTPKTLLENT AITIG
Sbjct: 724 NATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTGRLTSPSAIPAITIG 783
Query: 487 RLGYVCPHDVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFC 538
RLGYVCP +VAP+ C+SLRNIRDNEEKDSAFRG+C MI VNPGGVVQ+FIFFC
Sbjct: 784 RLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFC 843
Query: 539 DAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
DAVASW +PK+DL++MF+KILHGF+ QVG++NWQ+F++QFP L++RL+A YGV
Sbjct: 844 DAVASWVSPKDDLRDMFYKILHGFKDQVGEDNWQQFSEQFPPLLKERLAAFYGV 897
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2
Length = 891
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/603 (41%), Positives = 361/603 (59%), Gaps = 58/603 (9%)
Query: 14 GDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDW 73
D EEDE PDRD+D++PRFH S+ GE+ + D +++ W
Sbjct: 323 ADAEEDESFPDRDQDLKPRFHASRLHGSETGEDDDD-----------------DDAVNVW 365
Query: 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHD---WEIKESGILALGAIAEGCMN 130
NLRKCSAA LDVL+NVF +++LP L+P++++ L D W+ +E+ +L++GAIAEGC+
Sbjct: 366 NLRKCSAAGLDVLSNVFGDDILPTLMPLIQQNLARTDDDAWKEREAAVLSIGAIAEGCIT 425
Query: 131 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV-SQPHDSYLKPLMTEMLGCM 189
G+ PHL ++V FLI L DK L+R+ITCWTLSRYS ++V S H + + +LG +
Sbjct: 426 GLYPHLPQIVAFLIPLLDDKFPLIRSITCWTLSRYSKFIVQSLEHPNGREQFDKILLGLL 485
Query: 190 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH-DSYLKPLMT----- 243
++ ++K+ A + + PH L+ LM
Sbjct: 486 RRVLD-------------TNKRVQEAACSAFATLEEEAAEELVPHLGIILQHLMCAYGKY 532
Query: 244 EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSV 303
+ +NL ILYDA+GTLAD+VG LN+ +Y+ + MPPLI KW L + DKDLFPLLEC +S+
Sbjct: 533 QRRNLRILYDALGTLADAVGAELNQAKYLDIFMPPLITKWQQLANSDKDLFPLLECFTSI 592
Query: 304 ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAE 363
A AL GF + EPV++RC++LI+ +QH+A DK+F++ ALDLLSGLAE
Sbjct: 593 AQALGPGFSQFAEPVFQRCINLIQ---SQHLAKVDPAAAGALYDKEFIVCALDLLSGLAE 649
Query: 364 GLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423
GL I+SLVS S++ +L QC D +VRQS+ ALLGDL++ C H+HP + +F+ +
Sbjct: 650 GLGAGIESLVSQSSLRDILLQCCMDEAADVRQSALALLGDLSRVCPIHLHPRLQEFLNVA 709
Query: 424 GQNLNP----DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRP-NTPKTLL 478
+ LNP + +SV NNA WAIGE+++K+G+++ V V++ L+ I+ P K+LL
Sbjct: 710 AKQLNPQCVKEAVSVANNACWAIGELAIKIGKEISPVVITVVSCLVPILKSPEGLNKSLL 769
Query: 479 ENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV 530
EN+AIT+GRL +VCP VAP C++L IRD+ EK+ AF G+CAM+ NP G
Sbjct: 770 ENSAITLGRLCWVCPDIVAPHMDHFMQAWCNALCMIRDDFEKEDAFHGLCAMVAANPTGA 829
Query: 531 VQEFIFFCDAVASWSTPK-EDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAM 589
V F C A ASW+ K E L +IL+G++ +G W++ + RL
Sbjct: 830 VGSLTFICQACASWNEIKSEGLHNEVCQILNGYKQMLGSGGWEQCMSTLEPAVVQRL-GR 888
Query: 590 YGV 592
YGV
Sbjct: 889 YGV 891
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1
Length = 890
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 248/603 (41%), Positives = 361/603 (59%), Gaps = 58/603 (9%)
Query: 14 GDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDW 73
D EE+E PDRD+D++PRFH S+ GE+ + D +++ W
Sbjct: 322 ADAEEEESFPDRDQDLKPRFHASRLHGSETGEDDDD-----------------DDAVNVW 364
Query: 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHD---WEIKESGILALGAIAEGCMN 130
NLRKCSAA LDVL+NVF +++LP L+P++++ L D W+ +E+ +L++GAIAEGC+
Sbjct: 365 NLRKCSAAGLDVLSNVFGDDILPTLMPLIQQNLARTDDDAWKEREAAVLSIGAIAEGCIT 424
Query: 131 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV-SQPHDSYLKPLMTEMLGCM 189
G+ PHL ++V FLI L DK L+R+ITCWTLSRYS ++V S H + + +LG +
Sbjct: 425 GLYPHLPQIVAFLIPLLDDKFPLIRSITCWTLSRYSKFIVQSLEHPNGREQFDKILLGLL 484
Query: 190 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH-DSYLKPLMT----- 243
++ ++K+ A + + PH L+ LM
Sbjct: 485 RRVLD-------------TNKRVQEAACSAFATLEEEAAEELVPHLGIILQHLMCAYGKY 531
Query: 244 EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSV 303
+ +NL ILYDA+GTLAD+VG LN+ +Y+ + MPPLI KW L + DKDLFPLLEC +S+
Sbjct: 532 QRRNLRILYDALGTLADAVGAELNQAKYLDIFMPPLITKWQQLANSDKDLFPLLECFTSI 591
Query: 304 ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAE 363
A AL GF + EPV++RC++LI+ +QH+A DK+F++ ALDLLSGLAE
Sbjct: 592 AQALGPGFSQFAEPVFQRCINLIQ---SQHLAKVDPAAAGALYDKEFIVCALDLLSGLAE 648
Query: 364 GLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423
GL I+SLVS S++ +L QC D +VRQS+ ALLGDL++ C H+HP + +F+ +
Sbjct: 649 GLGAGIESLVSQSSLRDILLQCCMDEAADVRQSALALLGDLSRVCPIHLHPRLQEFLNVA 708
Query: 424 GQNLNP----DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRP-NTPKTLL 478
+ LNP + +SV NNA WAIGE+++K+G+++ V V++ L+ I+ P K+LL
Sbjct: 709 AKQLNPQCVKEAVSVANNACWAIGELAIKIGKEISPVVITVVSCLVPILKSPEGLNKSLL 768
Query: 479 ENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV 530
EN+AIT+GRL +VCP VAP C++L IRD+ EK+ AF G+CAM+ NP G
Sbjct: 769 ENSAITLGRLCWVCPDIVAPHMDHFMQAWCNALCMIRDDFEKEDAFHGLCAMVAANPTGA 828
Query: 531 VQEFIFFCDAVASWSTPK-EDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAM 589
V F C A ASW+ K E L +IL+G++ +G W++ + RL
Sbjct: 829 VGSLTFICQACASWNEIKSEGLHNEVCQILNGYKQMLGSGGWEQCMSTLEPAVVQRL-GR 887
Query: 590 YGV 592
YGV
Sbjct: 888 YGV 890
>sp|O14089|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=kap104 PE=3 SV=1
Length = 910
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 241/624 (38%), Positives = 354/624 (56%), Gaps = 64/624 (10%)
Query: 5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKR--SVKAEGENMNMGENGGEEVEEEDD 62
+++D++LL D + D + DR+EDIRP+ K K ++ +G G + + E ED+
Sbjct: 315 SDMDLLLLGNDAD-DYDVEDREEDIRPQHAKGKSRITLNTQGPITQQGSSNADADELEDE 373
Query: 63 DLDDDSS------LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKES 116
D DDD DWNLRKCSAAALDVL++ +++ LL ++LP LK++L DW+++E+
Sbjct: 374 DEDDDEFDEDDDAFMDWNLRKCSAAALDVLSSFWKQRLLEIILPHLKQSLTSEDWKVQEA 433
Query: 117 GILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDS 176
G+LA+GAIAEGCM+GMV +L EL P+ ++ L KK LVR ITCWTL RYS W
Sbjct: 434 GVLAVGAIAEGCMDGMVQYLPELYPYFLSLLDSKKPLVRTITCWTLGRYSKWA------- 486
Query: 177 YLKPLMTEMLGCMNGMVPHLNELVPF---LITCLSDKKALVRAITCWTLSRYSHWVVSQP 233
C+ VP L+ + D V+ C + Q
Sbjct: 487 ----------SCLESEEDRQKYFVPLLQGLLRMVVDNNKKVQEAGCSAFAILEE----QA 532
Query: 234 HDS---YLKPLMT---------EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQ 281
S YL+P++T + KN+LILYDA+ TLAD VG LN YI LL+ PL+Q
Sbjct: 533 GPSLVPYLEPILTNLAFAFQKYQRKNVLILYDAVQTLADYVGSALNDKRYIELLITPLLQ 592
Query: 282 KWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPE 341
KW+++ D+D +LFPL ECLSSVA AL+ GF P+ Y R ++ TL + +QN
Sbjct: 593 KWSMIPDDDPNLFPLFECLSSVAVALRDGFAPFAAETYARTFRILRNTL-YLITTAQNDP 651
Query: 342 QFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSN--IMHLLYQCMQDPMPEVRQSSFA 399
D PD+DF++ LDL+SG+ + L + L++ ++ + ++ C +D +PEVRQS++A
Sbjct: 652 TVDVPDRDFLVTTLDLVSGIIQALGSQVSPLLAQADPPLGQIIGICAKDEVPEVRQSAYA 711
Query: 400 LLGDLTKACFSHVHP-CISDFMPILGQNLNPDL-ISVCNNATWAIGEISVKLGEDMRRYV 457
LLGD+ CF + P C + + +L Q P L +S NNA W+ GE++++LG+DM+++V
Sbjct: 712 LLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSASNNAIWSAGEMALQLGKDMQQWV 771
Query: 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA--------PLCSSLRNIRDN 509
++ +LI I+ + T+LEN AITIGRLG P VA P ++ + +N
Sbjct: 772 KPLLERLICILKSKKSNTTVLENVAITIGRLGVYNPELVAPHLELFYQPWFEIIKTVGEN 831
Query: 510 EEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHG-FRTQVGD 568
EEKDSAFRG C ++ NP + F VA + P +L++MF KIL G G
Sbjct: 832 EEKDSAFRGFCNILACNPQALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNGK 891
Query: 569 ENWQRFADQFPDQLRDRLSAMYGV 592
+WQ P+ L ++ A YGV
Sbjct: 892 ASWQ----ASPEVLA-QIQAQYGV 910
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
Length = 891
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/470 (38%), Positives = 271/470 (57%), Gaps = 74/470 (15%)
Query: 187 GCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-----HDSYLKPL 241
GCMNG+ PHL+E+V FL+ L DK L+R+I+CWTLSR+ +++ + ++ + K L
Sbjct: 423 GCMNGLYPHLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQESGNPKGYEQFEKVL 482
Query: 242 MT-------------------------------------------------EHKNLLILY 252
M + +NL I+Y
Sbjct: 483 MGLLRRLLDTNKRVQEAACSAFATVEEDAAEELVPHLGVILQHLMCAFGKYQRRNLRIVY 542
Query: 253 DAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFL 312
DAIGTLADSV LNKP Y+ +LMPPL+ KW L + DKDLFPLLEC +S++ AL GF
Sbjct: 543 DAIGTLADSVREELNKPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTSISQALGVGFA 602
Query: 313 PYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAP-DKDFMIVALDLLSGLAEGLDMHIDS 371
P+ +PV++RC+ +I+ Q +A NP A D++F++ +LDLLSGLAEGL I+S
Sbjct: 603 PFAQPVFQRCMDIIQL---QQLAKV-NPASAGAQYDREFIVCSLDLLSGLAEGLGSGIES 658
Query: 372 LVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQ----NL 427
LV SN+ LL C D +VRQS+FAL+GDL + ++ P + DF+ I Q NL
Sbjct: 659 LVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPRLLDFLEIASQQLSANL 718
Query: 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINR-PNTPKTLLENTAITIG 486
N + +SV NNA WAIGE++VK+ +++ V V++ L +I+ K L+EN+AIT+G
Sbjct: 719 NRENLSVANNACWAIGELAVKVRQEVSPIVAKVVSSLGLILQHGEGVNKALVENSAITLG 778
Query: 487 RLGYVCP--------HDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFC 538
RL ++ P H + P C +L +RD+ EK+ AFRG+CA++ VNP G V +F C
Sbjct: 779 RLAWIRPDLVAPHMDHFMKPWCMALSMVRDDIEKEDAFRGLCAVVKVNPSGGVSSLVFIC 838
Query: 539 DAVASWSTPK-EDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLS 587
A+ASW + ED++ ++L+G++ +G+ +W +++RL+
Sbjct: 839 QAIASWHEIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLA 887
>sp|P38217|IMB2_YEAST Importin subunit beta-2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP104 PE=1 SV=1
Length = 918
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 194/559 (34%), Positives = 299/559 (53%), Gaps = 62/559 (11%)
Query: 6 EIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLD 65
E I+LL+ ++D + D+DEDI+P + R VK + E N + E +++DDD +
Sbjct: 334 EESIVLLEASNDDDAFLEDKDEDIKPI---APRIVKKK-EAGNGEDADDNEDDDDDDDDE 389
Query: 66 DDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIA 125
D + WNLRKCSAA LDV+ N+ +++ + P L+E L W I+E+ ILALGA+A
Sbjct: 390 DGDVDTQWNLRKCSAATLDVMTNILPHQVMDIAFPFLREHLGSDRWFIREATILALGAMA 449
Query: 126 EGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEM 185
EG M L L+PFL+ L+DK A VR +TCWTLSR+S W++ Q H +L P+
Sbjct: 450 EGGMKYFNDGLPALIPFLVEQLNDKWAPVRKMTCWTLSRFSPWIL-QDHTEFLIPV---- 504
Query: 186 LGCMNGMVPHLNELVPFLITCLSDKK----ALVRAITCWTLSRYSHWV----VSQPHDSY 237
L P + T + KK A + ++ + + S V SQ S+
Sbjct: 505 -------------LEPIINTLMDKKKDVQEAAISSVAVFIENADSELVETLFYSQLLTSF 551
Query: 238 LKPL-MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPL 296
K L + KNL+ILYDAIG A+ + +++PPLI+KW +L D DK+L+PL
Sbjct: 552 DKCLKYYKKKNLIILYDAIGRFAEKCAL---DETAMQIILPPLIEKWALLSDSDKELWPL 608
Query: 297 LECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALD 356
LECLS VA++L F+P VY R ++ + + Q+P P+KDF+I +LD
Sbjct: 609 LECLSCVASSLGERFMPMAPEVYNRAFRILCHCVELEAKSHQDP-TIVVPEKDFIITSLD 667
Query: 357 LLSGLAEGLDMHIDSLV-----SNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH 411
L+ GL +GL H L+ + I+ ++ +C+QDP+ EVRQS FALLGD+ S
Sbjct: 668 LIDGLVQGLGAHSQDLLFPQGTKDLTILKIMLECLQDPVHEVRQSCFALLGDIVYFFNSE 727
Query: 412 -VHPCISDFMPILG----QNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII 466
V + DF+ ++G N + D NA WA+G IS ++ D+ Y+ + ++++I+
Sbjct: 728 LVIGNLEDFLKLIGTEIMHNDDSDGTPAVINAIWALGLISERI--DLNTYI-IDMSRIIL 784
Query: 467 IINRPNTP---KTLLENTAITIGRLGYVCPHDVAP-----------LCSSLRNIRDNEEK 512
+ NT +++EN ++TIG++G P + C S+ + D EEK
Sbjct: 785 DLFTTNTQIVDSSVMENLSVTIGKMGLTHPEVFSSGAFANDSNWNKWCLSVNALDDVEEK 844
Query: 513 DSAFRGMCAMITVNPGGVV 531
SA+ G +I + V
Sbjct: 845 SSAYMGFLKIINLTSTEVT 863
>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2
Length = 876
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 181/434 (41%), Gaps = 62/434 (14%)
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
D++ DWN K + L +L+ ++++P +LP +KE + + DW +++ ++A G+I
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSI 393
Query: 125 AEGCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLM 182
EG N + P + + +P LI + D +VR T WT+ R + +D YL PL
Sbjct: 394 LEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEAAINDVYLAPL- 452
Query: 183 TEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKP 240
L C LI LS + + + CW S + + + D +P
Sbjct: 453 ---LQC--------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEP 494
Query: 241 LMT--EHKNLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFPL 296
LI+ + T GH L Y SL+ I+K+ KD +P
Sbjct: 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPA 546
Query: 297 LECLSSVATALQAGFLPYCEPV--------YRRCVSLIEQTLNQHMANSQNPEQFDAPDK 348
++ + V L + + SL+ TL + Q+ + D
Sbjct: 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606
Query: 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------E 392
M L + A + D+L++ S ++ +L + M+ P +
Sbjct: 607 -VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQ 665
Query: 393 VRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLG 450
V ++ L+GDL +A S++ P + M +L +NL + + SV G+I++ +G
Sbjct: 666 VCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 451 EDMRRYVPMVINQL 464
+ ++Y+ +V+N L
Sbjct: 726 GEFKKYLEVVLNTL 739
>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1
Length = 875
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 181/434 (41%), Gaps = 62/434 (14%)
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
D++ DWN K + L +L+ ++++P +LP +KE + + DW +++ ++A G+I
Sbjct: 333 DENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSI 392
Query: 125 AEGCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLM 182
EG N + P + + +P LI + D +VR T WT+ R + +D YL PL
Sbjct: 393 LEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEAAINDVYLAPL- 451
Query: 183 TEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKP 240
L C LI LS + + + CW S + + + D +P
Sbjct: 452 ---LQC--------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEP 493
Query: 241 LMT--EHKNLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFPL 296
LI+ + T GH L Y SL+ I+K+ KD +P
Sbjct: 494 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPA 545
Query: 297 LECLSSVATALQAGFLPYCEPV--------YRRCVSLIEQTLNQHMANSQNPEQFDAPDK 348
++ + V L + + SL+ TL + Q+ + D
Sbjct: 546 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLWKVQHQDALQISDV 605
Query: 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------E 392
M L + A + D+L++ S ++ +L + M+ P +
Sbjct: 606 -VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAECQ 664
Query: 393 VRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLG 450
V ++ L+GDL +A S++ P + M +L +NL + + SV G+I++ +G
Sbjct: 665 VCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDITLAIG 724
Query: 451 EDMRRYVPMVINQL 464
+ ++Y+ +V+N L
Sbjct: 725 GEFKKYLEVVLNTL 738
>sp|O13864|IMB1_SCHPO Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=kap95 PE=3 SV=1
Length = 863
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/421 (22%), Positives = 181/421 (42%), Gaps = 74/421 (17%)
Query: 60 EDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGIL 119
+D+D D+D DWN+ +A L + A V + ++ +L +++ + + DW +E+ ++
Sbjct: 333 QDEDADED----DWNISMAAATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVM 388
Query: 120 ALGAIAEGCMNGMV-PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 178
A G++ EG M+ P +N+ +P LI + D V+ T W L + S +V +
Sbjct: 389 AFGSVLEGPNVAMLTPLVNQALPVLINMMVDPVIFVKDTTAWALGQISSFVADA-----I 443
Query: 179 KPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT-LSRYSHWVVSQPHDSY 237
P + HL+ +V L+ L+D +V A CW ++ H+ P D++
Sbjct: 444 NPEI------------HLSPMVSALLQGLTDNPRIV-ANCCWAFMNLVCHFA---PVDNH 487
Query: 238 LKPLMT-------------------EHKNLLILYDAIGTL----ADSVGHHLNKPEYISL 274
+MT E+ + Y+ +GTL +DSV + I L
Sbjct: 488 QTSVMTPFYEAIIGSLLHVTDQKGNENNSRTSGYETLGTLITFSSDSVLPMIANVLSIIL 547
Query: 275 --LMPPLIQKWNILKDEDKDLFPLLEC-LSSVATALQAGFLPYCEPVYRRCVSLIEQTLN 331
L + + IL ED+ L+ L +V T++ F P + ++L+ QT+
Sbjct: 548 TRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDIRTSSDQIMNLLLQTM- 606
Query: 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP 391
Q + +D ++ +++ L E ++++ S V L +
Sbjct: 607 ------QTAPKQSVVHEDVLLAIGAMMNSLEEQFEVYVPSFVP-----FLSSALSNEQEY 655
Query: 392 EVRQSSFALLGDLTKACFSHVHPCISDFM---------PILGQNLNPDLISVCNNATWAI 442
++ + L+GDL +A + + P DFM +L +N+ P ++S ++ AI
Sbjct: 656 QLCSVAVGLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAI 715
Query: 443 G 443
G
Sbjct: 716 G 716
>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2
Length = 876
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 179/434 (41%), Gaps = 62/434 (14%)
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
D++ DWN K + L +LA ++++P +LP +KE + + DW +++ ++A G I
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 393
Query: 125 AEGCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLM 182
EG + + P + + +P LI + D +VR WT+ R + +D YL PL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL- 452
Query: 183 TEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH--WVVSQPHDSYLKP 240
L C LI LS + + + CW S + + + D +P
Sbjct: 453 ---LQC--------------LIEGLSAEPRVASNV-CWAFSSLAEAAYEAADVADDQEEP 494
Query: 241 LMT--EHKNLLILYDAIGTLADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDLFPL 296
LI+ + T GH L Y SL+ I+K+ KD +P
Sbjct: 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLM--------EIVKNSAKDCYPA 546
Query: 297 LECLSSVATALQAGFLPYCEPV--------YRRCVSLIEQTLNQHMANSQNPEQFDAPDK 348
++ + V L + + SL+ TL + Q+ + D
Sbjct: 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606
Query: 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------E 392
M L + A + D+L++ S ++ +L + M+ P +
Sbjct: 607 -VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQ 665
Query: 393 VRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLG 450
V ++ L+GDL +A S++ P + M +L +NL + + SV G+I++ +G
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 451 EDMRRYVPMVINQL 464
+ ++Y+ +V+N L
Sbjct: 726 GEFKKYLEVVLNTL 739
>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2
SV=2
Length = 884
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 55 EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIK 114
E++ ++D+ D+D+ W+ K ++ L VLA +E++P +LP +KE + +W +
Sbjct: 334 EKLTKQDECDDEDT----WSPAKAASVCLMVLATCCEDEIVPHVLPFIKENIESPNWRFR 389
Query: 115 ESGILALGAIAEGC-MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV-VSQ 172
++ ++ G++ G N + P + + +P LI + D +VR WT R + +
Sbjct: 390 DAAVMTFGSVLNGLETNTLKPLVEQAMPTLIRLMYDSSVIVRDTIAWTFGRICDIIPEAA 449
Query: 173 PHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAIT-------CWTLSRY 225
+++YL+ L+ + + P + V + LSD A A+T + LS Y
Sbjct: 450 INETYLQTLLECFVKSLKSE-PRVAANVCWAFIGLSD-AAWEAAVTNDGETPETYALSPY 507
Query: 226 SHWVVSQ 232
++++Q
Sbjct: 508 FEYIITQ 514
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 29/156 (18%)
Query: 95 LPVLLPILKETLFHHD-------WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147
L L P+L E L D W ++ + L +A C + +VPH+ +PF+ +
Sbjct: 325 LQFLTPVLVEKLTKQDECDDEDTWSPAKAASVCLMVLATCCEDEIVPHV---LPFIKENI 381
Query: 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCL 207
R T S L L T N + P + + +P LI +
Sbjct: 382 ESPNWRFRDAAVMTFG------------SVLNGLET------NTLKPLVEQAMPTLIRLM 423
Query: 208 SDKKALVRAITCWTLSRYSHWV-VSQPHDSYLKPLM 242
D +VR WT R + + +++YL+ L+
Sbjct: 424 YDSSVIVRDTIAWTFGRICDIIPEAAINETYLQTLL 459
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3
Length = 1105
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 35/264 (13%)
Query: 58 EEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH----DWEI 113
E E+DD D ++ ++ +ALD LA + V+LP+ KE + DW+
Sbjct: 334 EMEEDDFDSNAVAAE--------SALDRLACGLGGK---VVLPMTKEHIMQMLQSPDWKC 382
Query: 114 KESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 173
+ +G++AL AI EGC M P L+E V ++ L D VRA C TL + +
Sbjct: 383 RHAGLMALSAIGEGCHQQMEPILDETVNSVLLFLQDPHPRVRAAACTTLGQMATDFAPSF 442
Query: 174 HDSYLKPLMTEMLGCMNGMVPH------LNELVPFLITCLSDKKALVRAITCWTLSRYSH 227
+ + ++T +L M + LV F+ C K L+ + S +S
Sbjct: 443 QKKFHEIVITALLRTMENQGNQRVQSHAASALVIFIEDC--PKSLLILYLENMVKSLHSI 500
Query: 228 WVVSQPHDSYLKPLMTEHKNLLI--LYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285
V+ L+ L+ L + L I ++AD++ Y + MP L +
Sbjct: 501 LVIK------LQELIRNGTKLALEQLVTTIASVADAIEESF--IPYYDIFMPSLKHVVEL 552
Query: 286 LKDEDKDLF--PLLECLSSVATAL 307
++ L +EC+S V A+
Sbjct: 553 AVQKELKLLRGKTIECISHVGLAV 576
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
Length = 1097
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 58 EEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH----DWEI 113
E EDDD D ++ + +ALD +A +L+ LP++KE + DW+
Sbjct: 326 ELEDDDFDSNAVAGE--------SALDRMACGLGGKLV---LPMIKEHIMQMLQNPDWKY 374
Query: 114 KESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITC 159
+ +G++AL AI EGC M LNE+V F++ L D VR C
Sbjct: 375 RHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAAC 420
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4
Length = 1097
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 58 EEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH----DWEI 113
E EDDD D ++ + +ALD +A +L+ LP++KE + DW+
Sbjct: 326 ELEDDDFDSNAVAGE--------SALDRMACGLGGKLV---LPMIKEHIMQMLQNPDWKY 374
Query: 114 KESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITC 159
+ +G++AL AI EGC M LNE+V F++ L D VR C
Sbjct: 375 RHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAAC 420
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2
Length = 1105
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 35/264 (13%)
Query: 58 EEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH----DWEI 113
E E+DD D ++ ++ +ALD LA + V+LP+ KE + DW+
Sbjct: 334 EMEEDDFDSNAVAAE--------SALDRLACGLGGK---VVLPMTKEHIMQMLQSPDWKY 382
Query: 114 KESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR----YSHWV 169
+ +G++AL AI EGC M L+E V ++ L D VRA C TL + ++
Sbjct: 383 RHAGLMALSAIGEGCHQQMESILDETVNSVLLFLQDPHPRVRAAACTTLGQMATDFAPNF 442
Query: 170 VSQPHDSYLKPLMTEMLGCMNGMVPH--LNELVPFLITCLSDKKALVRAITCWTLSRYSH 227
+ H++ + L+ M N V + L+ F+ C K LV + + +S
Sbjct: 443 QKKFHETVIAALLRTMENQGNQRVQSHAASALIIFIEDC--PKSLLVLYVDSMVKNLHSV 500
Query: 228 WVVSQPHDSYLKPLMTEHKNLLI--LYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285
V+ L+ L+ L + L I ++AD++ Y + MP L +
Sbjct: 501 LVIK------LQELIRNGTKLALEQLVTTIASVADTIEEKF--VPYYDIFMPSLKHIVEL 552
Query: 286 LKDEDKDLF--PLLECLSSVATAL 307
++ L +EC+S + A+
Sbjct: 553 AVQKELKLLRGKTIECISHIGLAV 576
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFAL 400
+ +PD + L LS + EG ++S++ + LL+ +QDP P VR ++
Sbjct: 373 QMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLF--LQDPHPRVRAAACTT 430
Query: 401 LGDLTKACFSHVHPCISDFMPILGQNLNPDLIS 433
LG + +DF P + + +I+
Sbjct: 431 LGQMA-----------TDFAPNFQKKFHETVIA 452
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=prp10 PE=1 SV=3
Length = 1205
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKET-LFHHDWEIKESGILALGAIAE--GC 128
D +R +A A V+A+ +P LLP LK W+ + +G+ + IA GC
Sbjct: 522 DEYVRNTTARAFSVVASALG---VPALLPFLKAVCRSKKSWQARHTGVRIIQQIALLLGC 578
Query: 129 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS---QPHDSYLKPL 181
++PHL LV + L D++ VR +T +LS + + DS LKPL
Sbjct: 579 --SILPHLKNLVDCIGHGLEDEQQKVRIMTALSLSALAEAATPYGIEAFDSVLKPL 632
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sal3 PE=3 SV=1
Length = 1095
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 127/323 (39%), Gaps = 57/323 (17%)
Query: 51 ENGGEEVEE--EDDDLDDDSSLSDWNLRKCSAAALDVLANVFR-EELLPVLLPILKETLF 107
E+ EE++E DDLD D S D N + A+D L+ + +LP L +
Sbjct: 325 EDEAEELQEWLNTDDLDQDES--DAN-HVVAEQAMDRLSRKLGGKTILPPSFTWLPRLIP 381
Query: 108 HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167
W + + ++A+ +IAEG M L+ ++ ++ L+D VR C + + S
Sbjct: 382 SQKWSERHAALMAISSIAEGAEKLMKKELSRVLDMVLPLLADPHPRVRWAACNAVGQMS- 440
Query: 168 WVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227
+ P M V + + ++ L+ L ++ V+A + +S
Sbjct: 441 --------TDFAPDM---------QVKYPSRILEALVPVLESPESRVQAHAAAAMVNFSE 483
Query: 228 WVVSQPHDSYLKPLMTEHKNLL---------ILYDAIGTLADSVGHHLNKPEYISLLMPP 278
++ + YL ++ LL I T+AD+ K Y +MP
Sbjct: 484 EADNKVLEPYLDDILQRLLTLLQSPKRYVQEQAVTTIATVADAAAKKFEK--YFDAIMPL 541
Query: 279 LIQKWNILKDEDKDLFPLL-----ECLSSVATAL-QAGFLPYCEPVYRRCVSLIEQTLNQ 332
L +N+L+ D F L EC + +A A+ + FLP + Q L Q
Sbjct: 542 L---FNVLQQADGKEFRTLRGKTMECATLIALAVGKQRFLP------------VSQELIQ 586
Query: 333 HMANSQ-NPEQFDAPDKDFMIVA 354
+ N Q D P ++I A
Sbjct: 587 ILGNIQMGITDSDDPQASYLISA 609
>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP95 PE=1 SV=1
Length = 861
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 65 DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
++D DWN+ + A L + A +L +L +++ + +W +E+ ++A G+I
Sbjct: 337 NEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396
Query: 125 AEGCMN-GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170
+G ++++ +P ++ ++D+ V+ T W + R + V
Sbjct: 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 398 FALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
F + L + + F P L + LN V A I +IS L ED RRY
Sbjct: 619 FYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678
Query: 458 PMVINQLIIIINRPNTPKTL-------LENTAITIGRLGYVCPHDVAPLCSSLRNIR 507
++N L +I+ PN + L + A IG +D+ LC + +N +
Sbjct: 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum
GN=DDB_G0291650 PE=3 SV=1
Length = 1067
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 30/233 (12%)
Query: 60 EDDDLDD----DSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKE 115
ED DL D D+ SD + + A++ L++ + L L L +W+ +
Sbjct: 312 EDMDLKDWNSLDTEPSDDDDSNVAFEAIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERY 371
Query: 116 SGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHD 175
+G++ L +I+EGC + + ++ ++ +D VR + L ++ ++ + D
Sbjct: 372 TGLMTLSSISEGCEKQIKTNFKLIIQSILPLANDSHPRVRFAFFYCLGSFASYLKREMQD 431
Query: 176 SY--LKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233
Y L P+ E HLN+ PF +S+ + L + +R V +
Sbjct: 432 LYKTLIPVSLE----------HLND--PFPRVTISNCEFLTLFLDEIKPNR-----VKEF 474
Query: 234 HDSYLKPL--MTEHKNLLIL---YDAIGTLADSVGHHLNKPEYISLLMPPLIQ 281
D +L L + +++N I+ +A ++ D +G ++ S +MP LI+
Sbjct: 475 KDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFT--QHYSEIMPFLIK 525
>sp|P32600|TOR2_YEAST Serine/threonine-protein kinase TOR2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TOR2 PE=1 SV=3
Length = 2474
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 378 IMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNN 437
++ LL Q MP+ ++ S LL L + P I + ++ +V +
Sbjct: 720 LLELLTQLKFSNMPKKKEESATLLCTLINSSDEVAKPYIDPILDVILPKCQDASSAVAST 779
Query: 438 ATWAIGEISVKLGEDMRRYV----PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493
A +GE+SV G++M RY+ P++IN ++ N+ K + T+G+L
Sbjct: 780 ALKVLGELSVVGGKEMTRYLKELMPLIINTF---QDQSNSFKR--DAALTTLGQLAASSG 834
Query: 494 HDVAPLCSS------LRNIRDNEEKDSAFRGMCAMITV 525
+ V PL L NI E RG +I +
Sbjct: 835 YVVGPLLDYPELLGILINILKTENNPHIRRGTVRLIGI 872
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
Length = 1307
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKET-LFHHDWEIKESGILALGAIA--EGC 128
D +R +A A V+A+ +P LLP LK W+ + +GI + IA GC
Sbjct: 624 DEYVRNTTARAFAVVASALG---IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGC 680
Query: 129 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS---QPHDSYLKPL 181
++PHL LV + L D++ VR I+ ++ + + DS LKPL
Sbjct: 681 --AILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPL 734
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3
Length = 1304
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKET-LFHHDWEIKESGILALGAIA--EGC 128
D +R +A A V+A+ +P LLP LK W+ + +GI + IA GC
Sbjct: 621 DEYVRNTTARAFAVVASALG---IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGC 677
Query: 129 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS---QPHDSYLKPL 181
++PHL LV + L D++ VR I+ ++ + + DS LKPL
Sbjct: 678 --AILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPL 731
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1
Length = 1304
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKET-LFHHDWEIKESGILALGAIA--EGC 128
D +R +A A V+A+ +P LLP LK W+ + +GI + IA GC
Sbjct: 621 DEYVRNTTARAFAVVASALG---IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGC 677
Query: 129 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS---QPHDSYLKPL 181
++PHL LV + L D++ VR I+ ++ + + DS LKPL
Sbjct: 678 --AILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPL 731
>sp|Q02821|IMA1_YEAST Importin subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRP1 PE=1 SV=1
Length = 542
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLITCLSDKKALVRA 156
+P+ + L+ E+KE I ALG +A + V N + P L S+K +L+R
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRA 216
T WTLS QP S ++ +P L +L+ + D + LV A
Sbjct: 235 AT-WTLSNLCRGKKPQPDWS-----------VVSQALPTLAKLIYSM-----DTETLVDA 277
Query: 217 ITCWTLSRYS 226
CW +S S
Sbjct: 278 --CWAISYLS 285
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2
Length = 1081
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 92 EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFL-ITC--LS 148
E+L P L+P+L+E L +++G+L L +++G + + L L P L I C L
Sbjct: 347 EKLCPQLMPMLEEALRSESPYQRKAGLLVLAVLSDGAGDHIRQRL--LPPLLQIVCKGLE 404
Query: 149 DKKALVRAITCWTLSRYSHWVVSQPH-DSYLKPLMTEMLGCMNGM 192
D +VR + L ++S + QPH SY + +M +L + +
Sbjct: 405 DPSQVVRNAALFALGQFSENL--QPHISSYSREVMPLLLAYLKSV 447
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412
L +L+ L++G HI + ++ ++ + ++DP VR ++ LG ++ H+
Sbjct: 371 AGLLVLAVLSDGAGDHIRQRLLPP-LLQIVCKGLEDPSQVVRNAALFALGQFSENLQPHI 429
Query: 413 HPCISDFMPILGQNLNPDLISVCNN---ATWAIGEISVKLGEDMRRYVPMVINQLIIIIN 469
+ MP+L L + ++ A +A+ LG ++ Y+P ++ ++ ++
Sbjct: 430 SSYSREVMPLLLAYLKSVPLGHTHHLAKACYALENFVENLGPKVQPYLPELMECMLQLLR 489
Query: 470 RPNTPKT 476
P++P+
Sbjct: 490 NPSSPRA 496
>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2
Length = 536
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H+D+++ + A+G I G LN +P L+ LS K +R CW
Sbjct: 299 LVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q D+ + P++ E+L
Sbjct: 359 TISNITAGNRAQIQAVIDANIFPVLIEIL 387
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 35.8 bits (81), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 50/243 (20%)
Query: 6 EIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLD 65
E I+L + DE+IPD E + + K + + + G +E+ + + + D
Sbjct: 152 EFAIVLYDPTTDADEIIPDIKEVL---------AEKRKKDELLKNRKGKKEISDSEPESD 202
Query: 66 DDSSLSDWNLRKCSAAALDVLANVFR----EELLPVLLPILKETLFHHDWEIKESGILAL 121
DS +S + CS + +N + + L LL I KE K
Sbjct: 203 HDSCVSTDTVASCSTEQSLITSNTSKHRRPNKSLKDLLGIQKE---------KPPPPPVA 253
Query: 122 GAIAEGCMNGMVPHLNELVPFLITC-------------LSDKKALVRAITCWTLSRYSHW 168
I + PH E V FL C ++D+ L + + C L W
Sbjct: 254 VVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALL----W 309
Query: 169 VVSQPHDSYLKPLMTE-MLGCMNGMVPH-LNELV---------PFLITCLSDKKALVRAI 217
+ + KP + + ++ C + +V + NELV PF++ S K+ L+ A+
Sbjct: 310 TLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMAL 369
Query: 218 TCW 220
W
Sbjct: 370 QQW 372
>sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1
Length = 521
Score = 35.8 bits (81), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 369 IDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQN 426
ID L+ S I+ +L +C++ D P ++ + L ++ + + S+ +P+ +
Sbjct: 107 IDDLIK-SGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRL 165
Query: 427 LNPDLISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTLLENTAIT 484
L+ +VC A WA+G I + G R YV V+ L+ IN P+ P T L N
Sbjct: 166 LHSPHQNVCEQAVWALGNI-IGDGPQCRDYVISLGVVKPLLSFIN-PSIPITFLRNVTWV 223
Query: 485 IGRL 488
I L
Sbjct: 224 IVNL 227
>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1
Length = 536
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H+D+++ + A+G I G LN +P L+ LS K +R CW
Sbjct: 299 LVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q D+ + P++ E+L
Sbjct: 359 TISNITAGNRAQIQAVIDANIFPVLIEIL 387
>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1
Length = 536
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H+D+++ + A+G I G LN +P L+ LS K +R CW
Sbjct: 299 LVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q D+ + P++ E+L
Sbjct: 359 TISNITAGNRAQIQAVIDANIFPVLIEIL 387
>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2
Length = 248
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 94 LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151
LLP L+P+LK L H D E+ E G+ AL ++ + HL L+ L L DKK
Sbjct: 155 LLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSLSKRLMDKK 212
>sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1
PE=3 SV=1
Length = 2667
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 76 RKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH 135
R+ SA L + + + +LP +LPIL+ L E ++ + L + ++P+
Sbjct: 1944 RQISAKTLGDIVSKLSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSAKTQLLPY 2003
Query: 136 LNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG 191
L+ +V + L D VR H S+ + L P + ++L N
Sbjct: 2004 LSSVVTCITKALCDPLIDVREAAAKAFDHLYHTFGSKASNEIL-PQLIQLLDNSNN 2058
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLI-TCLSDKKAL 153
L +L+P++K L E++ ALG + G + + L+P+L+ T SD+ A+
Sbjct: 1654 LNILMPVMKTVLLDPIPEVRAICARALGLLVRGMGE---ENFSTLIPWLLETVKSDQGAV 1710
Query: 154 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNE--LVPFLITCLS 208
R+ LS V++ S L+ E+L N PH+ E L F+ T +S
Sbjct: 1711 ERSGAAQGLSE----VLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPIS 1763
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKKAL 153
L +LLPIL+ TL E+K+ +G + +VP+LN L+P + T L D
Sbjct: 1612 LSLLLPILERTLKERSSELKKMSCQIVGNLCSLTEPKDLVPYLNILMPVMKTVLLDPIPE 1671
Query: 154 VRAITCWTL 162
VRAI L
Sbjct: 1672 VRAICARAL 1680
>sp|O15131|IMA5_HUMAN Importin subunit alpha-6 OS=Homo sapiens GN=KPNA5 PE=1 SV=2
Length = 536
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H+D+++ + A+G I G LN +P L+ LS K +R CW
Sbjct: 299 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q D+ + P++ E+L
Sbjct: 359 TVSNITAGNRAQIQAVIDANIFPVLIEIL 387
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1
Length = 1067
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALV 154
LP + PI+ L +D +++++ +LAL IA + H +L+P + +S + V
Sbjct: 381 LPNIFPIIINGLCDNDMDVRQAALLALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKV 440
Query: 155 RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189
C + + YL LM ++G +
Sbjct: 441 GKSACNCIDALLEGLDKSEISGYLPMLMERLVGLL 475
>sp|Q6ZQ73|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus
GN=Cand2 PE=1 SV=2
Length = 1235
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTK 406
D + ALD+LS + L + + +++++H L + P VR+ + LG L
Sbjct: 147 DVAVQLEALDILSDMLSRLGAPLGTF--HASLLHCLLPQLSSPRLAVRKRTVVALGHLAA 204
Query: 407 AC----FSHVHPCISDFMPILGQNLNPDLISVCNNATWAIG-EISVKLGEDMRRYVPMV 460
AC F + + D +P +P I ++G + +LG + R VPMV
Sbjct: 205 ACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMV 263
>sp|Q503E9|IMA5_DANRE Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2
Length = 536
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H D+++ + A+G I G LN +P L+ LS K ++ CW
Sbjct: 299 LVELLMHSDYKVVSPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIKKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q DS + P++ E+L
Sbjct: 359 TVSNITAGNRAQIQAVIDSNVFPVLIEIL 387
>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3
Length = 1122
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 82 ALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILAL 121
AL V++ +F E++P +LP++++ L H I+ +LAL
Sbjct: 152 ALTVVSQIFPREMIPAVLPLIEDKLQHSKEIIRRKAVLAL 191
>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCW 160
L E L H+D ++ + A+G I G LN +P L+ LS K +R CW
Sbjct: 299 LVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACW 358
Query: 161 TLSRYSHWVVSQPH---DSYLKPLMTEML 186
T+S + +Q D+ + P++ E+L
Sbjct: 359 TISNITAGNRAQIQAVIDANIFPVLIEIL 387
>sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2
Length = 521
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 369 IDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQN 426
ID L+ S I+ +L +C++ D P ++ + L ++ + + S+ +P+ +
Sbjct: 107 IDDLIK-SGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRL 165
Query: 427 LNPDLISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTLLENTAIT 484
L +VC A WA+G I + G R YV V+ L+ I+ P+ P T L N
Sbjct: 166 LRSPHQNVCEQAVWALGNI-IGDGPQCRDYVISLGVVKPLLSFIS-PSIPITFLRNVTWV 223
Query: 485 IGRL 488
I L
Sbjct: 224 IVNL 227
>sp|A3GG03|NAGS_PICST Amino-acid acetyltransferase, mitochondrial OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=ARG2 PE=3 SV=2
Length = 581
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 259 ADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPV 318
+ V ++L KPE L +++ ++ E+K+ P++ L S+ L G +P+ +P+
Sbjct: 168 VNKVMNYLGKPEEEGNLKTTVLR--SLFTVENKERGPVINSLESILIPLYQGIIPFIQPI 225
Query: 319 YRRCVSLIEQTLNQH 333
S +Q +N +
Sbjct: 226 IYNAESTFQQFINSN 240
>sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GCN1 PE=1 SV=1
Length = 2672
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAI 157
L+P+ L W K + LG +A + L+ +VP ++ L+D VR
Sbjct: 1448 LIPVAVSNLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKA 1507
Query: 158 TCWTLSRYSHWVVSQPHDSYLKPLMTEMLG 187
+L R+ V+ P L P++ + +G
Sbjct: 1508 ADESLKRFGE-VIRNPEIQKLVPVLLQAIG 1536
>sp|Q54J88|MMS19_DICDI MMS19 nucleotide excision repair protein homolog OS=Dictyostelium
discoideum GN=mms19 PE=3 SV=2
Length = 1115
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152
E+LP+++ LK + + ++ +S + L + + + +L+ L+P LI +S K
Sbjct: 995 EILPIVMQSLKSSDNNDQVQLLDSSLQTLTMLINETPSSFISYLDSLIPSLIK-ISTKS- 1052
Query: 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKA 212
T + L R + +++ L+++ + +N + P+ ++V +I CL DKK
Sbjct: 1053 -----TKYNLKRSALEILT---------LLSKSIPFVN-LFPYKTQVVTDIIPCLDDKKR 1097
Query: 213 LVR 215
+VR
Sbjct: 1098 IVR 1100
>sp|Q5R6J0|ECM29_PONAB Proteasome-associated protein ECM29 homolog (Fragment) OS=Pongo
abelii GN=ECM29 PE=2 SV=2
Length = 1810
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL-----SDKKA 152
L+ I ++ L W++K G +A+ +IA+ + + P+L ++ L+ L + K+
Sbjct: 1493 LITITQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEE 1552
Query: 153 LVRAITCWTLSRYS 166
L++AI C ++ YS
Sbjct: 1553 LLKAIAC-VVTAYS 1565
>sp|Q5VYK3|ECM29_HUMAN Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29
PE=1 SV=2
Length = 1845
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL-----SDKKA 152
L+ I ++ L W++K G +A+ +IA+ + + P+L ++ L+ L + K+
Sbjct: 1528 LITITQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLGMILTALLQGLAGRTWAGKEE 1587
Query: 153 LVRAITC 159
L++AI C
Sbjct: 1588 LLKAIAC 1594
>sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gcn1 PE=3 SV=1
Length = 2670
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 179 KPLMTEMLGCMNGMVPH-----LNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233
K E+LG M+ M P L ++P L L+D + VR +L R+ V+S P
Sbjct: 1498 KKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGD-VISNP 1556
Query: 234 HDSYLKPLMTEHKNLLILY--DAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI------ 285
L P + + + Y DA+ L + H P ++L++P I K+ +
Sbjct: 1557 EIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIP--ILKYGLRERNAG 1614
Query: 286 LKDEDKDLFPLLECLS---SVATALQAGFLPYCEPVY------------RRCVSLIEQTL 330
K + +F L+ L+ ++A L++ +P V + SLIE+ L
Sbjct: 1615 TKRQSAKIFGLMASLTEPENLAVYLES-LMPRLREVLIDPVPDTRATAAKALGSLIEK-L 1672
Query: 331 NQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSL--VSNSNIMHLLYQCMQD 388
+ + PE F+ + V G A+GL + L +++ + +
Sbjct: 1673 GEKKFPTLIPELFNVLRSECSEVDRQ---GAAQGLSEILAGLGLARLEDVLPEILKNTSS 1729
Query: 389 PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD 430
P+P +R+S +LL L S P ++ +P + L D
Sbjct: 1730 PVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 108 HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167
++W K++ + LG ++ + L ++P L L+D + VR +L R+
Sbjct: 1492 EYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGD 1551
Query: 168 WVVSQPHDSYLKPLMTEMLG--------CMNGMV----------PHLNELVPFLITCLSD 209
V+S P L P + + L + ++ P L ++P L L +
Sbjct: 1552 -VISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRE 1610
Query: 210 KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLI--LYDAIGTLADSVGHHLN 267
+ A + + + + YL+ LM + +LI + D T A ++G +
Sbjct: 1611 RNAGTKRQSAKIFGLMASLTEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIE 1670
Query: 268 K--PEYISLLMPPLIQKWNILKDE 289
K + L+P L +N+L+ E
Sbjct: 1671 KLGEKKFPTLIPEL---FNVLRSE 1691
>sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1
SV=2
Length = 514
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNL 427
ID L+ S I+ +L QC+ P ++ + L ++ + + +P+ Q L
Sbjct: 101 IDDLIG-SGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLL 159
Query: 428 NPDLISVCNNATWAIGEISVKLGEDMRRY-VPMVINQLIIIINRPNTPKTLLENTAITIG 486
+ ++VC + WA+G I + G R Y + + I Q ++ P P L N I
Sbjct: 160 SCGNLNVCEQSVWALGNI-IGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIV 218
Query: 487 RLGYVCPHDVAPLCSSLRNI 506
L D AP + +R I
Sbjct: 219 NLCRC--KDPAPSPAVVRTI 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,535,497
Number of Sequences: 539616
Number of extensions: 9940837
Number of successful extensions: 33402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 32804
Number of HSP's gapped (non-prelim): 448
length of query: 592
length of database: 191,569,459
effective HSP length: 123
effective length of query: 469
effective length of database: 125,196,691
effective search space: 58717248079
effective search space used: 58717248079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)