Query psy9904
Match_columns 592
No_of_seqs 392 out of 2039
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:38:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023|consensus 100.0 4E-122 8E-127 933.4 40.1 553 3-592 309-885 (885)
2 KOG2171|consensus 100.0 6.7E-50 1.5E-54 433.4 42.2 510 77-592 327-1075(1075)
3 KOG2023|consensus 100.0 1.4E-37 3E-42 317.3 28.2 390 109-539 367-790 (885)
4 KOG1241|consensus 100.0 7.7E-37 1.7E-41 317.0 33.5 441 73-569 340-816 (859)
5 COG5215 KAP95 Karyopherin (imp 100.0 3.2E-31 7E-36 266.7 34.6 438 73-569 342-814 (858)
6 KOG2171|consensus 100.0 8.7E-27 1.9E-31 254.1 37.9 433 73-525 94-763 (1075)
7 KOG0213|consensus 99.9 2.2E-22 4.9E-27 208.2 34.9 424 74-532 491-963 (1172)
8 KOG1241|consensus 99.9 2.7E-22 5.8E-27 209.3 34.6 402 71-497 376-818 (859)
9 COG5181 HSH155 U2 snRNP splice 99.8 1.3E-18 2.8E-23 177.4 26.8 418 74-532 296-768 (975)
10 COG5215 KAP95 Karyopherin (imp 99.8 7.4E-18 1.6E-22 170.8 29.9 395 71-494 378-813 (858)
11 KOG1824|consensus 99.8 4.4E-16 9.6E-21 166.0 38.2 492 74-587 62-707 (1233)
12 KOG0212|consensus 99.7 1.6E-14 3.4E-19 147.1 30.0 371 72-503 13-420 (675)
13 KOG1824|consensus 99.7 9.6E-14 2.1E-18 148.5 35.3 254 67-327 340-661 (1233)
14 KOG1991|consensus 99.6 5.2E-12 1.1E-16 136.9 35.0 391 73-526 386-850 (1010)
15 KOG0166|consensus 99.6 1.2E-12 2.6E-17 135.6 27.0 391 99-564 68-486 (514)
16 KOG0213|consensus 99.6 1.5E-11 3.2E-16 128.8 33.5 470 73-584 455-975 (1172)
17 PLN03200 cellulose synthase-in 99.5 6.3E-11 1.4E-15 140.7 38.8 406 73-525 161-594 (2102)
18 PF01602 Adaptin_N: Adaptin N 99.5 2.7E-11 5.9E-16 133.1 33.9 418 74-562 94-522 (526)
19 KOG0915|consensus 99.5 2.6E-12 5.5E-17 144.0 24.5 357 71-467 969-1364(1702)
20 KOG0166|consensus 99.5 3.9E-13 8.4E-18 139.3 16.4 320 96-489 108-435 (514)
21 KOG1242|consensus 99.5 9.9E-12 2.1E-16 129.6 25.3 359 72-498 147-531 (569)
22 PLN03200 cellulose synthase-in 99.5 1.4E-10 3.1E-15 137.7 35.8 408 74-565 419-861 (2102)
23 KOG0915|consensus 99.4 6.7E-11 1.5E-15 132.9 29.5 376 79-530 941-1350(1702)
24 KOG1242|consensus 99.4 9.7E-12 2.1E-16 129.7 20.7 313 73-472 230-548 (569)
25 KOG0212|consensus 99.4 8.6E-11 1.9E-15 120.2 26.3 341 70-471 54-427 (675)
26 COG5181 HSH155 U2 snRNP splice 99.3 7.4E-10 1.6E-14 114.3 25.5 488 71-591 329-943 (975)
27 PF01602 Adaptin_N: Adaptin N 99.3 1.7E-08 3.6E-13 111.0 37.5 440 72-590 55-519 (526)
28 KOG0211|consensus 99.3 4.8E-09 1E-13 115.3 32.4 383 74-490 252-664 (759)
29 COG5064 SRP1 Karyopherin (impo 99.2 5.1E-11 1.1E-15 114.9 10.6 274 98-446 115-397 (526)
30 COG5064 SRP1 Karyopherin (impo 99.2 6.1E-10 1.3E-14 107.6 17.1 351 98-525 72-444 (526)
31 PRK09687 putative lyase; Provi 99.2 1.2E-09 2.7E-14 108.5 20.0 103 85-225 15-118 (280)
32 PF12755 Vac14_Fab1_bd: Vacuol 99.2 2E-10 4.3E-15 94.2 10.4 91 74-165 1-94 (97)
33 PTZ00429 beta-adaptin; Provisi 99.2 3.1E-07 6.7E-12 102.3 38.2 401 74-553 120-535 (746)
34 PRK13800 putative oxidoreducta 99.1 4.7E-09 1E-13 121.5 23.4 272 99-486 623-895 (897)
35 PRK09687 putative lyase; Provi 99.1 6.5E-09 1.4E-13 103.4 19.6 240 73-444 37-279 (280)
36 COG5656 SXM1 Importin, protein 99.1 2.6E-06 5.5E-11 90.6 37.1 355 77-494 388-761 (970)
37 PF13513 HEAT_EZ: HEAT-like re 99.1 2E-10 4.2E-15 84.5 4.7 55 111-165 1-55 (55)
38 KOG2022|consensus 99.0 4E-06 8.6E-11 90.9 38.4 353 75-498 440-830 (982)
39 PF12755 Vac14_Fab1_bd: Vacuol 99.0 7.7E-10 1.7E-14 90.7 8.0 87 113-218 2-88 (97)
40 PRK13800 putative oxidoreducta 99.0 2.8E-08 6E-13 115.1 23.4 241 139-488 622-865 (897)
41 PTZ00429 beta-adaptin; Provisi 98.9 1.6E-05 3.6E-10 88.7 37.9 119 76-226 50-168 (746)
42 KOG1993|consensus 98.9 4.4E-05 9.5E-10 82.1 38.9 473 71-591 409-976 (978)
43 KOG1059|consensus 98.9 7.6E-06 1.7E-10 86.9 32.6 237 81-405 128-364 (877)
44 PF10508 Proteasom_PSMB: Prote 98.9 6.8E-06 1.5E-10 89.1 33.8 341 102-524 43-420 (503)
45 KOG1060|consensus 98.9 1.8E-06 3.9E-11 92.3 28.1 398 72-500 84-543 (968)
46 KOG1992|consensus 98.8 3.5E-05 7.7E-10 83.2 36.4 357 74-478 377-782 (960)
47 PF12348 CLASP_N: CLASP N term 98.8 1.4E-07 3E-12 91.8 17.1 200 384-586 14-227 (228)
48 PF10508 Proteasom_PSMB: Prote 98.8 3.5E-06 7.7E-11 91.3 29.4 298 79-449 58-368 (503)
49 KOG0211|consensus 98.8 5.2E-06 1.1E-10 91.8 29.0 145 351-505 496-645 (759)
50 KOG1240|consensus 98.8 1.3E-06 2.9E-11 97.2 22.6 299 98-450 423-728 (1431)
51 KOG1062|consensus 98.7 2E-05 4.4E-10 84.9 30.2 310 83-449 89-416 (866)
52 KOG1943|consensus 98.7 3.9E-05 8.4E-10 85.2 32.2 359 71-489 353-746 (1133)
53 KOG4224|consensus 98.7 1.5E-06 3.3E-11 85.2 19.1 310 105-493 175-496 (550)
54 KOG1060|consensus 98.7 1.2E-05 2.6E-10 86.2 26.1 397 72-523 49-491 (968)
55 KOG2274|consensus 98.6 0.00012 2.7E-09 79.9 32.9 384 73-496 376-786 (1005)
56 KOG1991|consensus 98.6 0.0016 3.5E-08 72.3 41.0 395 75-498 105-581 (1010)
57 PF03378 CAS_CSE1: CAS/CSE pro 98.5 8.1E-05 1.7E-09 78.5 28.3 302 270-588 22-434 (435)
58 cd00020 ARM Armadillo/beta-cat 98.5 7.4E-07 1.6E-11 76.7 9.7 110 98-225 8-118 (120)
59 PF12460 MMS19_C: RNAPII trans 98.5 0.0002 4.4E-09 76.0 29.8 344 81-467 21-414 (415)
60 PF12348 CLASP_N: CLASP N term 98.5 5.5E-06 1.2E-10 80.4 16.0 182 70-310 18-211 (228)
61 KOG1240|consensus 98.4 1.5E-05 3.3E-10 89.0 20.3 268 74-409 438-728 (1431)
62 PF13513 HEAT_EZ: HEAT-like re 98.4 4.1E-07 9E-12 66.7 4.0 55 391-445 1-55 (55)
63 cd00020 ARM Armadillo/beta-cat 98.3 2.5E-06 5.3E-11 73.4 8.9 111 377-489 7-119 (120)
64 PF13646 HEAT_2: HEAT repeats; 98.3 5.7E-06 1.2E-10 67.1 8.9 58 99-166 1-59 (88)
65 KOG2022|consensus 98.2 0.01 2.2E-07 65.4 34.8 366 69-502 477-929 (982)
66 KOG1061|consensus 98.2 0.00057 1.2E-08 74.0 25.2 373 71-493 98-492 (734)
67 KOG4224|consensus 98.2 9.4E-05 2E-09 72.9 17.3 305 75-454 183-500 (550)
68 KOG1248|consensus 98.2 0.023 5.1E-07 64.7 38.7 229 350-587 670-918 (1176)
69 COG5656 SXM1 Importin, protein 98.1 0.021 4.5E-07 61.9 34.2 415 99-591 462-969 (970)
70 KOG1020|consensus 98.1 0.034 7.3E-07 64.8 37.1 128 95-225 814-958 (1692)
71 KOG1059|consensus 98.1 0.0039 8.4E-08 67.0 27.5 76 70-150 155-230 (877)
72 PF02985 HEAT: HEAT repeat; I 98.1 4.6E-06 1E-10 52.9 3.7 30 139-168 1-30 (31)
73 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.017 3.6E-07 61.2 30.0 287 108-472 41-352 (435)
74 PF12717 Cnd1: non-SMC mitotic 98.0 7.6E-05 1.7E-09 69.3 11.0 93 73-169 2-94 (178)
75 PF13646 HEAT_2: HEAT repeats; 97.9 4.1E-05 8.8E-10 62.0 8.0 76 71-163 12-88 (88)
76 KOG0891|consensus 97.9 0.0049 1.1E-07 76.1 28.6 100 72-171 106-208 (2341)
77 PF14500 MMS19_N: Dos2-interac 97.9 0.00093 2E-08 65.7 18.4 248 101-424 3-256 (262)
78 KOG1993|consensus 97.9 0.025 5.4E-07 61.7 30.0 143 309-472 563-712 (978)
79 KOG2259|consensus 97.9 0.00062 1.3E-08 72.2 17.7 67 98-169 199-265 (823)
80 KOG0891|consensus 97.9 0.0056 1.2E-07 75.6 28.4 416 73-524 579-1041(2341)
81 PF02985 HEAT: HEAT repeat; I 97.9 1.8E-05 4E-10 50.2 4.1 31 98-128 1-31 (31)
82 COG5240 SEC21 Vesicle coat com 97.9 0.0049 1.1E-07 64.5 23.2 68 377-446 487-554 (898)
83 KOG1248|consensus 97.8 0.0076 1.7E-07 68.4 25.5 94 376-469 826-921 (1176)
84 KOG2274|consensus 97.8 0.11 2.3E-06 57.9 34.9 190 348-543 544-757 (1005)
85 KOG1967|consensus 97.8 0.00021 4.6E-09 78.3 12.2 131 352-486 885-1020(1030)
86 KOG1077|consensus 97.8 0.092 2E-06 56.7 33.0 285 250-580 309-602 (938)
87 KOG1820|consensus 97.8 0.0018 3.9E-08 72.7 19.6 143 294-461 313-458 (815)
88 KOG2956|consensus 97.8 0.0031 6.6E-08 64.7 19.3 201 96-420 286-492 (516)
89 KOG2032|consensus 97.7 0.004 8.7E-08 64.3 19.6 113 69-181 227-343 (533)
90 KOG1943|consensus 97.7 0.16 3.5E-06 57.5 32.8 266 93-409 337-614 (1133)
91 PF12460 MMS19_C: RNAPII trans 97.7 0.037 7.9E-07 58.8 27.4 214 261-500 177-404 (415)
92 KOG4413|consensus 97.7 0.047 1E-06 53.7 24.9 89 79-167 63-157 (524)
93 KOG1020|consensus 97.7 0.15 3.3E-06 59.6 32.6 111 72-189 829-940 (1692)
94 KOG2021|consensus 97.6 0.0086 1.9E-07 64.7 20.8 321 73-427 413-785 (980)
95 PF12717 Cnd1: non-SMC mitotic 97.6 0.0015 3.2E-08 60.7 13.4 105 349-462 3-108 (178)
96 KOG0168|consensus 97.6 0.1 2.2E-06 57.5 28.3 37 136-172 209-246 (1051)
97 KOG2259|consensus 97.6 0.0023 4.9E-08 68.1 15.5 303 72-498 211-519 (823)
98 COG5240 SEC21 Vesicle coat com 97.6 0.039 8.5E-07 58.1 24.1 316 110-489 237-554 (898)
99 PF10274 ParcG: Parkin co-regu 97.5 0.0013 2.9E-08 60.0 11.7 118 377-494 38-168 (183)
100 PF05804 KAP: Kinesin-associat 97.5 0.053 1.1E-06 60.5 26.2 344 78-492 268-651 (708)
101 KOG4653|consensus 97.4 0.0086 1.9E-07 65.7 18.5 229 139-447 728-964 (982)
102 PF08506 Cse1: Cse1; InterPro 97.4 0.0012 2.5E-08 68.4 11.6 127 73-221 225-369 (370)
103 KOG1058|consensus 97.4 0.026 5.6E-07 61.2 21.6 60 91-151 128-187 (948)
104 KOG1062|consensus 97.4 0.18 3.9E-06 55.5 27.6 54 80-133 125-178 (866)
105 KOG1967|consensus 97.4 0.0013 2.9E-08 72.3 11.5 128 80-225 888-1022(1030)
106 KOG0413|consensus 97.4 0.066 1.4E-06 59.6 23.9 140 390-542 944-1092(1529)
107 KOG2956|consensus 97.3 0.027 5.8E-07 58.0 19.5 196 388-586 298-499 (516)
108 COG1413 FOG: HEAT repeat [Ener 97.3 0.041 8.8E-07 56.7 21.7 91 96-225 42-133 (335)
109 KOG2032|consensus 97.3 0.17 3.7E-06 52.7 24.6 90 81-170 198-290 (533)
110 KOG1078|consensus 97.3 0.051 1.1E-06 59.3 21.7 72 95-170 243-314 (865)
111 COG5096 Vesicle coat complex, 97.3 0.05 1.1E-06 60.4 22.1 57 431-493 461-522 (757)
112 PF08167 RIX1: rRNA processing 97.3 0.013 2.7E-07 53.6 15.0 79 93-171 21-101 (165)
113 KOG4524|consensus 97.2 0.27 5.9E-06 55.2 26.4 81 347-429 816-900 (1014)
114 PF08506 Cse1: Cse1; InterPro 97.1 0.13 2.8E-06 53.4 22.5 129 349-485 226-370 (370)
115 KOG1077|consensus 97.1 0.6 1.3E-05 50.8 32.6 80 379-464 370-450 (938)
116 PF05804 KAP: Kinesin-associat 97.1 0.74 1.6E-05 51.6 31.3 336 100-491 253-608 (708)
117 KOG1061|consensus 97.0 0.88 1.9E-05 50.2 29.8 124 75-226 65-188 (734)
118 KOG1992|consensus 96.9 0.94 2E-05 50.2 39.0 433 73-537 19-590 (960)
119 KOG2160|consensus 96.8 0.28 6.1E-06 49.3 20.4 175 349-525 98-283 (342)
120 KOG4653|consensus 96.7 0.05 1.1E-06 60.0 15.8 134 353-489 825-963 (982)
121 PF14500 MMS19_N: Dos2-interac 96.7 0.3 6.5E-06 48.1 20.2 52 415-466 205-257 (262)
122 TIGR02270 conserved hypothetic 96.7 0.0091 2E-07 62.6 9.9 86 100-225 120-205 (410)
123 PF08064 UME: UME (NUC010) dom 96.6 0.029 6.4E-07 47.1 10.8 79 389-469 27-106 (107)
124 PF10274 ParcG: Parkin co-regu 96.6 0.029 6.2E-07 51.4 11.3 103 348-452 52-169 (183)
125 PLN03076 ARF guanine nucleotid 96.6 0.95 2.1E-05 55.9 27.3 118 379-498 1349-1497(1780)
126 COG1413 FOG: HEAT repeat [Ener 96.6 0.011 2.4E-07 60.9 9.7 79 72-167 56-135 (335)
127 KOG1820|consensus 96.5 0.033 7.2E-07 62.8 13.6 203 92-319 248-458 (815)
128 KOG0414|consensus 96.5 0.91 2E-05 52.3 24.3 106 376-491 918-1028(1251)
129 KOG0168|consensus 96.5 0.39 8.4E-06 53.2 20.5 140 348-492 226-366 (1051)
130 PF08767 CRM1_C: CRM1 C termin 96.4 0.28 6.1E-06 50.0 18.6 204 353-564 91-316 (319)
131 PF05004 IFRD: Interferon-rela 96.4 0.27 5.9E-06 49.8 18.3 134 352-489 104-256 (309)
132 KOG4535|consensus 96.2 0.78 1.7E-05 47.7 19.8 100 390-490 497-603 (728)
133 TIGR02270 conserved hypothetic 96.2 0.088 1.9E-06 55.3 13.6 106 100-225 150-265 (410)
134 PF08167 RIX1: rRNA processing 96.1 0.12 2.7E-06 47.1 12.8 120 377-500 25-153 (165)
135 COG5096 Vesicle coat complex, 96.1 0.28 6.1E-06 54.7 17.7 97 380-488 95-193 (757)
136 KOG2933|consensus 96.1 0.052 1.1E-06 53.2 10.2 89 98-187 89-177 (334)
137 PF04826 Arm_2: Armadillo-like 96.1 0.023 4.9E-07 55.6 8.0 94 99-194 14-112 (254)
138 KOG1837|consensus 96.1 4.3 9.3E-05 48.5 27.0 212 352-568 1367-1615(1621)
139 KOG0946|consensus 96.0 0.49 1.1E-05 52.1 18.2 181 294-493 41-244 (970)
140 PLN03076 ARF guanine nucleotid 96.0 5 0.00011 49.9 28.7 227 348-578 1197-1507(1780)
141 PF12719 Cnd3: Nuclear condens 96.0 0.86 1.9E-05 46.0 19.4 107 380-492 30-145 (298)
142 PF00514 Arm: Armadillo/beta-c 95.9 0.014 3.1E-07 39.5 4.2 29 138-166 12-40 (41)
143 PF05004 IFRD: Interferon-rela 95.8 1.3 2.9E-05 44.8 19.9 113 382-494 48-164 (309)
144 PF13251 DUF4042: Domain of un 95.8 0.17 3.7E-06 46.7 12.2 56 113-168 2-70 (182)
145 KOG4524|consensus 95.8 2.1 4.5E-05 48.5 22.3 94 377-470 803-900 (1014)
146 KOG1058|consensus 95.7 4.3 9.2E-05 44.9 24.3 59 104-168 106-164 (948)
147 PF10521 DUF2454: Protein of u 95.5 0.35 7.6E-06 48.4 14.4 62 110-171 88-152 (282)
148 KOG2933|consensus 95.4 0.33 7.2E-06 47.8 13.0 101 71-171 100-203 (334)
149 smart00802 UME Domain in UVSB 95.4 0.19 4.2E-06 42.0 9.8 89 378-468 12-105 (107)
150 KOG2062|consensus 95.3 0.79 1.7E-05 50.2 16.5 89 349-445 604-694 (929)
151 PF12054 DUF3535: Domain of un 95.3 2.8 6.2E-05 44.7 20.8 81 71-151 99-181 (441)
152 PF11919 DUF3437: Domain of un 95.2 0.024 5.1E-07 45.7 3.8 76 511-587 5-80 (90)
153 PF08064 UME: UME (NUC010) dom 95.2 0.1 2.3E-06 43.7 8.0 72 99-172 13-88 (107)
154 KOG0392|consensus 95.2 0.098 2.1E-06 60.0 9.7 97 73-169 143-239 (1549)
155 COG5101 CRM1 Importin beta-rel 95.2 5.9 0.00013 42.9 26.4 190 75-284 459-672 (1053)
156 PF10363 DUF2435: Protein of u 95.0 0.22 4.7E-06 40.5 8.8 71 99-170 5-75 (92)
157 KOG1078|consensus 95.0 7.5 0.00016 43.3 24.4 144 133-307 240-385 (865)
158 KOG4535|consensus 94.9 4.5 9.7E-05 42.4 19.9 117 350-470 500-624 (728)
159 KOG0414|consensus 94.9 0.23 4.9E-06 56.9 11.7 142 414-563 915-1063(1251)
160 KOG2081|consensus 94.8 0.21 4.6E-06 52.9 10.5 107 75-189 368-477 (559)
161 PF07571 DUF1546: Protein of u 94.8 0.11 2.3E-06 42.4 6.6 56 71-126 18-78 (92)
162 PF11865 DUF3385: Domain of un 94.8 0.35 7.6E-06 43.8 10.7 70 378-447 87-157 (160)
163 smart00802 UME Domain in UVSB 94.7 0.21 4.5E-06 41.8 8.2 72 98-171 12-87 (107)
164 PF08767 CRM1_C: CRM1 C termin 94.7 0.87 1.9E-05 46.4 14.5 107 294-410 90-198 (319)
165 KOG0392|consensus 94.6 0.38 8.2E-06 55.5 12.4 134 352-493 794-928 (1549)
166 PF01347 Vitellogenin_N: Lipop 94.5 0.38 8.2E-06 54.1 12.5 138 378-528 432-590 (618)
167 KOG1851|consensus 94.4 15 0.00034 44.1 33.5 161 417-580 1525-1693(1710)
168 KOG2062|consensus 94.3 0.14 3E-06 55.7 7.8 117 98-224 520-650 (929)
169 COG5116 RPN2 26S proteasome re 94.2 0.14 2.9E-06 54.1 7.4 53 109-167 598-650 (926)
170 smart00638 LPD_N Lipoprotein N 94.2 0.34 7.3E-06 54.0 11.2 140 377-529 393-547 (574)
171 cd08050 TAF6 TATA Binding Prot 94.2 0.36 7.9E-06 49.7 10.6 91 82-172 198-302 (343)
172 PF11865 DUF3385: Domain of un 94.1 0.36 7.8E-06 43.8 9.2 118 370-489 3-156 (160)
173 KOG2160|consensus 94.1 2.2 4.8E-05 43.1 15.4 102 390-494 96-200 (342)
174 PF08623 TIP120: TATA-binding 94.1 0.13 2.9E-06 46.6 6.2 78 390-470 40-117 (169)
175 PF08623 TIP120: TATA-binding 94.1 0.47 1E-05 43.1 9.7 97 73-170 41-150 (169)
176 KOG0567|consensus 94.0 1.7 3.6E-05 42.1 13.6 51 350-412 236-286 (289)
177 COG5098 Chromosome condensatio 94.0 0.63 1.4E-05 50.5 11.8 106 377-492 892-1002(1128)
178 PF10363 DUF2435: Protein of u 93.9 0.48 1E-05 38.5 8.6 85 378-470 4-88 (92)
179 cd08050 TAF6 TATA Binding Prot 93.8 0.76 1.6E-05 47.3 12.0 94 397-490 237-340 (343)
180 PF05918 API5: Apoptosis inhib 93.6 13 0.00028 40.6 25.0 91 73-168 36-126 (556)
181 PF12054 DUF3535: Domain of un 93.6 12 0.00026 40.0 22.7 104 111-217 101-206 (441)
182 PF11919 DUF3437: Domain of un 93.6 0.12 2.6E-06 41.6 4.5 57 112-169 4-60 (90)
183 KOG1293|consensus 93.3 2 4.2E-05 46.7 14.1 136 347-488 390-531 (678)
184 PF13251 DUF4042: Domain of un 93.2 0.96 2.1E-05 41.8 10.3 100 393-493 2-134 (182)
185 cd03568 VHS_STAM VHS domain fa 93.1 2.7 5.9E-05 37.3 12.8 96 71-171 16-114 (144)
186 PF00514 Arm: Armadillo/beta-c 93.1 0.17 3.6E-06 34.1 3.9 29 418-446 12-40 (41)
187 KOG2005|consensus 93.0 3.1 6.7E-05 45.3 14.8 66 96-165 414-479 (878)
188 COG5116 RPN2 26S proteasome re 92.9 0.54 1.2E-05 49.9 9.0 60 101-166 520-580 (926)
189 PF10521 DUF2454: Protein of u 92.8 4.2 9.1E-05 40.7 15.3 77 93-169 115-205 (282)
190 KOG1517|consensus 92.6 1.2 2.7E-05 50.6 11.9 96 75-170 573-674 (1387)
191 PF12719 Cnd3: Nuclear condens 92.2 8.3 0.00018 38.9 16.7 104 416-525 24-144 (298)
192 KOG0567|consensus 92.2 0.52 1.1E-05 45.4 7.2 60 97-166 218-279 (289)
193 PF04826 Arm_2: Armadillo-like 92.1 3 6.4E-05 40.9 12.8 141 378-524 13-163 (254)
194 KOG2137|consensus 92.1 5.5 0.00012 43.9 15.7 97 348-450 364-461 (700)
195 PF08713 DNA_alkylation: DNA a 92.1 0.63 1.4E-05 44.3 8.1 66 96-167 119-184 (213)
196 smart00288 VHS Domain present 92.1 4.8 0.0001 35.2 12.9 87 95-181 35-125 (133)
197 KOG2149|consensus 92.0 1.8 3.8E-05 44.4 11.2 115 379-495 60-175 (393)
198 PF08389 Xpo1: Exportin 1-like 91.9 0.84 1.8E-05 40.4 8.2 96 74-170 3-118 (148)
199 smart00185 ARM Armadillo/beta- 91.8 0.24 5.1E-06 33.0 3.4 29 138-166 12-40 (41)
200 COG5110 RPN1 26S proteasome re 91.7 16 0.00034 39.2 17.8 68 96-167 412-479 (881)
201 KOG1837|consensus 91.3 0.98 2.1E-05 53.5 9.6 92 78-170 1523-1614(1621)
202 KOG1822|consensus 91.1 47 0.001 41.1 24.4 112 386-501 1068-1201(2067)
203 COG5218 YCG1 Chromosome conden 91.0 2 4.3E-05 46.0 10.7 78 93-170 87-164 (885)
204 PF00790 VHS: VHS domain; Int 91.0 4.7 0.0001 35.6 11.9 87 95-181 40-132 (140)
205 cd03568 VHS_STAM VHS domain fa 90.7 4.4 9.6E-05 35.9 11.4 75 377-451 37-114 (144)
206 PF04118 Dopey_N: Dopey, N-ter 90.7 11 0.00024 37.9 15.5 143 295-452 27-172 (307)
207 PF01347 Vitellogenin_N: Lipop 90.6 0.58 1.3E-05 52.6 7.1 87 73-169 449-555 (618)
208 KOG4413|consensus 90.5 2.1 4.5E-05 42.6 9.7 133 392-529 55-205 (524)
209 PF12765 Cohesin_HEAT: HEAT re 90.2 0.48 1E-05 32.2 3.7 41 120-162 2-42 (42)
210 KOG3961|consensus 90.1 0.85 1.9E-05 42.4 6.3 88 378-465 115-205 (262)
211 PF01603 B56: Protein phosphat 90.0 28 0.00062 36.8 25.8 90 352-447 273-370 (409)
212 PF09026 CENP-B_dimeris: Centr 89.5 0.21 4.7E-06 39.7 1.7 10 113-122 89-98 (101)
213 cd00256 VATPase_H VATPase_H, r 89.4 32 0.0007 36.4 23.7 67 99-166 104-172 (429)
214 cd03561 VHS VHS domain family; 89.2 12 0.00026 32.7 12.7 77 95-171 35-116 (133)
215 PF03224 V-ATPase_H_N: V-ATPas 88.9 17 0.00037 36.9 15.7 176 379-558 107-308 (312)
216 PF07571 DUF1546: Protein of u 88.9 2 4.3E-05 34.9 7.0 62 108-169 17-80 (92)
217 KOG2025|consensus 88.8 6.1 0.00013 43.5 12.4 75 93-167 81-155 (892)
218 KOG2025|consensus 88.8 1.9 4.1E-05 47.2 8.6 88 72-163 98-189 (892)
219 cd03569 VHS_Hrs_Vps27p VHS dom 88.7 6.1 0.00013 35.0 10.6 77 96-172 40-119 (142)
220 smart00567 EZ_HEAT E-Z type HE 88.7 0.56 1.2E-05 29.0 2.9 30 111-150 1-30 (30)
221 KOG2081|consensus 88.5 24 0.00053 37.9 16.3 165 348-527 366-539 (559)
222 cd03561 VHS VHS domain family; 88.3 5 0.00011 35.0 9.8 75 377-451 37-116 (133)
223 KOG2021|consensus 88.1 50 0.0011 37.0 35.2 41 428-468 545-585 (980)
224 KOG0889|consensus 88.0 1.1E+02 0.0023 40.8 23.8 74 97-170 984-1065(3550)
225 KOG2549|consensus 88.0 8.1 0.00018 41.3 12.5 95 350-446 263-369 (576)
226 PF12830 Nipped-B_C: Sister ch 87.7 2.7 5.9E-05 39.2 8.2 70 95-168 6-75 (187)
227 PF14668 RICTOR_V: Rapamycin-i 87.6 1.3 2.8E-05 34.1 4.9 54 113-168 3-59 (73)
228 COG5098 Chromosome condensatio 87.6 7.2 0.00016 42.8 11.9 112 379-493 301-418 (1128)
229 COG5101 CRM1 Importin beta-rel 87.4 49 0.0011 36.3 29.2 129 397-528 503-652 (1053)
230 cd06561 AlkD_like A new struct 87.3 5.3 0.00011 37.3 10.1 64 100-168 108-171 (197)
231 KOG2149|consensus 86.9 8.2 0.00018 39.7 11.5 94 377-470 99-193 (393)
232 cd03567 VHS_GGA VHS domain fam 86.8 9.2 0.0002 33.7 10.5 74 377-450 38-119 (139)
233 KOG2549|consensus 86.5 10 0.00023 40.5 12.3 80 411-490 281-370 (576)
234 cd00197 VHS_ENTH_ANTH VHS, ENT 86.1 9 0.0002 32.4 10.0 72 93-164 33-112 (115)
235 PF12765 Cohesin_HEAT: HEAT re 86.0 1.2 2.5E-05 30.3 3.5 39 82-120 2-41 (42)
236 KOG1243|consensus 85.9 2.2 4.8E-05 46.7 7.3 110 376-491 329-438 (690)
237 KOG1243|consensus 85.9 2.1 4.5E-05 46.9 7.0 105 98-225 331-435 (690)
238 KOG2199|consensus 85.7 10 0.00022 38.8 11.2 100 67-171 20-122 (462)
239 COG5095 TAF6 Transcription ini 85.4 19 0.00042 35.5 12.5 96 350-447 252-359 (450)
240 cd03565 VHS_Tom1 VHS domain fa 85.4 22 0.00047 31.4 12.2 89 376-464 37-133 (141)
241 PF00790 VHS: VHS domain; Int 85.2 12 0.00026 33.0 10.5 74 377-450 42-121 (140)
242 PF08161 NUC173: NUC173 domain 84.7 18 0.00038 34.0 11.9 58 352-411 18-75 (198)
243 PF11698 V-ATPase_H_C: V-ATPas 84.4 3 6.5E-05 35.4 6.0 70 419-491 44-116 (119)
244 KOG1517|consensus 84.4 18 0.0004 41.7 13.5 143 348-493 571-735 (1387)
245 PF03130 HEAT_PBS: PBS lyase H 84.3 0.62 1.3E-05 28.2 1.3 27 113-149 1-27 (27)
246 cd03569 VHS_Hrs_Vps27p VHS dom 84.3 13 0.00028 32.9 10.2 76 376-451 40-118 (142)
247 KOG1293|consensus 83.8 18 0.0004 39.5 12.8 94 71-168 389-491 (678)
248 cd03572 ENTH_epsin_related ENT 83.7 15 0.00033 31.4 10.0 74 93-166 34-118 (122)
249 PF12231 Rif1_N: Rap1-interact 83.6 60 0.0013 33.9 24.1 91 353-445 249-350 (372)
250 KOG1822|consensus 83.6 1.3E+02 0.0028 37.6 32.5 101 71-171 888-992 (2067)
251 PF11698 V-ATPase_H_C: V-ATPas 83.5 5.1 0.00011 34.0 7.0 69 98-167 44-115 (119)
252 PF12333 Ipi1_N: Rix1 complex 82.9 3.4 7.3E-05 34.3 5.6 61 368-430 4-65 (102)
253 PF12530 DUF3730: Protein of u 82.9 47 0.001 32.1 16.5 168 347-527 14-188 (234)
254 smart00638 LPD_N Lipoprotein N 82.5 86 0.0019 34.8 23.7 120 414-537 393-522 (574)
255 cd03565 VHS_Tom1 VHS domain fa 82.5 34 0.00074 30.2 12.7 106 72-182 18-130 (141)
256 PF05918 API5: Apoptosis inhib 82.4 46 0.001 36.4 15.4 68 376-447 58-125 (556)
257 PF03224 V-ATPase_H_N: V-ATPas 82.1 56 0.0012 33.1 15.5 69 98-167 107-179 (312)
258 KOG2137|consensus 81.9 6.8 0.00015 43.2 8.9 90 78-170 369-461 (700)
259 COG4912 Predicted DNA alkylati 81.7 9.4 0.0002 36.0 8.6 80 83-168 103-184 (222)
260 smart00288 VHS Domain present 81.6 18 0.00039 31.5 10.1 74 377-450 37-114 (133)
261 PF05536 Neurochondrin: Neuroc 81.0 95 0.002 34.3 26.3 70 98-167 6-86 (543)
262 COG5095 TAF6 Transcription ini 80.7 12 0.00026 36.9 9.2 95 396-490 255-359 (450)
263 KOG2153|consensus 80.7 96 0.0021 34.2 28.7 28 99-126 212-239 (704)
264 KOG4199|consensus 80.5 47 0.001 33.6 13.3 148 349-500 257-413 (461)
265 cd06561 AlkD_like A new struct 80.2 16 0.00036 33.9 10.2 76 380-460 108-183 (197)
266 PF12397 U3snoRNP10: U3 small 79.8 12 0.00026 32.0 8.3 72 93-167 2-74 (121)
267 PF12333 Ipi1_N: Rix1 complex 79.5 7.1 0.00015 32.4 6.4 62 410-471 3-65 (102)
268 COG5218 YCG1 Chromosome conden 79.4 12 0.00026 40.3 9.4 88 72-162 104-194 (885)
269 cd03567 VHS_GGA VHS domain fam 79.1 28 0.00061 30.7 10.4 75 96-170 37-119 (139)
270 KOG2213|consensus 78.8 22 0.00048 36.5 10.6 32 73-107 75-106 (460)
271 COG5657 CSE1 CAS/CSE protein i 78.7 1.3E+02 0.0029 34.6 23.0 41 69-109 370-410 (947)
272 KOG2973|consensus 78.1 7.4 0.00016 38.6 7.0 65 102-168 8-72 (353)
273 smart00185 ARM Armadillo/beta- 78.1 2.7 5.8E-05 27.7 3.0 28 419-446 13-40 (41)
274 PF04078 Rcd1: Cell differenti 78.1 24 0.00053 34.4 10.4 109 379-490 97-218 (262)
275 KOG2005|consensus 77.3 93 0.002 34.5 15.2 66 95-166 450-517 (878)
276 PF04388 Hamartin: Hamartin pr 77.0 11 0.00024 42.5 9.1 90 377-468 70-161 (668)
277 KOG2973|consensus 76.9 40 0.00086 33.7 11.5 104 380-489 6-110 (353)
278 KOG1949|consensus 76.9 23 0.00049 39.2 10.7 128 97-224 174-328 (1005)
279 KOG1048|consensus 75.3 1.5E+02 0.0032 33.5 24.9 96 431-529 532-646 (717)
280 PF12783 Sec7_N: Guanine nucle 74.8 34 0.00074 31.1 10.3 99 391-489 36-145 (168)
281 cd07064 AlkD_like_1 A new stru 74.7 25 0.00053 33.4 9.6 66 97-168 115-180 (208)
282 PF13001 Ecm29: Proteasome sta 74.6 1.4E+02 0.003 32.7 24.2 114 376-492 318-445 (501)
283 PF08713 DNA_alkylation: DNA a 74.5 6.1 0.00013 37.5 5.5 77 377-459 120-196 (213)
284 KOG3036|consensus 73.5 91 0.002 30.2 15.6 92 353-446 98-196 (293)
285 KOG0413|consensus 73.5 35 0.00076 39.2 11.3 74 376-452 1005-1078(1529)
286 KOG3961|consensus 73.4 11 0.00024 35.3 6.4 73 96-168 113-185 (262)
287 PF11864 DUF3384: Domain of un 72.9 1.4E+02 0.0031 32.2 35.9 57 74-130 5-62 (464)
288 PF04118 Dopey_N: Dopey, N-ter 72.0 92 0.002 31.5 13.3 134 356-491 30-168 (307)
289 KOG1525|consensus 72.0 2.4E+02 0.0052 34.4 23.7 98 390-493 235-332 (1266)
290 KOG1949|consensus 69.3 17 0.00037 40.1 7.6 96 67-167 231-331 (1005)
291 KOG2199|consensus 69.2 50 0.0011 34.0 10.4 75 376-450 44-121 (462)
292 PF11701 UNC45-central: Myosin 69.2 24 0.00051 31.8 7.7 94 73-166 19-116 (157)
293 PF05536 Neurochondrin: Neuroc 69.1 1.1E+02 0.0025 33.7 14.3 171 347-525 70-262 (543)
294 PF09324 DUF1981: Domain of un 68.6 23 0.00049 28.3 6.6 58 106-163 27-84 (86)
295 cd00256 VATPase_H VATPase_H, r 68.6 1.7E+02 0.0036 31.2 20.7 226 349-578 69-323 (429)
296 KOG4500|consensus 68.0 17 0.00036 37.9 7.0 71 96-166 314-389 (604)
297 PF04510 DUF577: Family of unk 67.3 1E+02 0.0022 28.1 11.9 47 395-443 60-107 (174)
298 cd00197 VHS_ENTH_ANTH VHS, ENT 67.1 65 0.0014 27.0 9.7 43 376-418 36-78 (115)
299 KOG1851|consensus 67.0 34 0.00073 41.4 10.0 93 75-167 1503-1598(1710)
300 PF12783 Sec7_N: Guanine nucle 67.0 58 0.0013 29.5 10.0 98 350-447 38-146 (168)
301 PF09324 DUF1981: Domain of un 65.2 33 0.00072 27.3 7.0 56 387-442 28-83 (86)
302 PF04388 Hamartin: Hamartin pr 64.5 27 0.00059 39.5 8.6 79 348-427 82-161 (668)
303 PF13001 Ecm29: Proteasome sta 64.4 16 0.00034 39.9 6.6 97 74-171 336-447 (501)
304 PF12397 U3snoRNP10: U3 small 64.3 46 0.001 28.3 8.3 74 414-492 2-76 (121)
305 cd03572 ENTH_epsin_related ENT 63.3 55 0.0012 28.0 8.3 45 377-421 38-82 (122)
306 PF12830 Nipped-B_C: Sister ch 63.3 59 0.0013 30.2 9.4 71 377-451 8-78 (187)
307 PF04510 DUF577: Family of unk 62.8 20 0.00042 32.6 5.7 101 377-487 3-108 (174)
308 KOG2122|consensus 62.5 2.4E+02 0.0052 34.7 15.3 70 418-490 530-601 (2195)
309 KOG0803|consensus 62.2 54 0.0012 39.7 10.6 90 351-442 58-148 (1312)
310 KOG0889|consensus 62.2 82 0.0018 41.7 12.5 136 279-423 7-143 (3550)
311 PF14868 DUF4487: Domain of un 61.1 37 0.0008 37.3 8.5 87 81-167 463-552 (559)
312 PF14764 SPG48: AP-5 complex s 61.0 2.3E+02 0.0051 30.2 15.8 106 390-495 281-401 (459)
313 PF08146 BP28CT: BP28CT (NUC21 60.8 86 0.0019 28.1 9.6 98 295-407 40-148 (153)
314 PF12530 DUF3730: Protein of u 60.7 93 0.002 30.0 10.6 82 71-157 96-179 (234)
315 PF11701 UNC45-central: Myosin 60.7 30 0.00064 31.2 6.7 138 381-521 7-156 (157)
316 KOG0803|consensus 60.6 22 0.00048 42.8 7.2 72 94-165 80-151 (1312)
317 PF09026 CENP-B_dimeris: Centr 57.7 9.1 0.0002 30.7 2.4 10 154-163 89-98 (101)
318 PF14668 RICTOR_V: Rapamycin-i 57.2 35 0.00077 26.3 5.5 52 76-127 4-59 (73)
319 PF01603 B56: Protein phosphat 54.4 2.9E+02 0.0063 29.2 23.1 55 71-125 102-161 (409)
320 PF08389 Xpo1: Exportin 1-like 54.1 1E+02 0.0022 26.7 9.1 67 413-485 77-148 (148)
321 PF08161 NUC173: NUC173 domain 53.6 52 0.0011 30.9 7.2 72 381-452 4-75 (198)
322 PF06371 Drf_GBD: Diaphanous G 52.1 87 0.0019 28.7 8.6 56 110-166 129-186 (187)
323 PF08146 BP28CT: BP28CT (NUC21 51.5 1.8E+02 0.0039 26.0 10.2 91 78-168 40-148 (153)
324 PF10446 DUF2457: Protein of u 50.9 13 0.00028 38.7 2.9 16 67-82 119-134 (458)
325 PF14911 MMS22L_C: S-phase gen 49.5 3.3E+02 0.0071 28.4 17.7 56 352-409 229-290 (373)
326 cd07064 AlkD_like_1 A new stru 47.4 1.7E+02 0.0036 27.7 9.7 77 377-459 115-191 (208)
327 KOG3036|consensus 46.9 2.8E+02 0.0062 27.0 11.2 100 109-225 90-195 (293)
328 PF08569 Mo25: Mo25-like; Int 46.5 2.3E+02 0.0051 29.0 11.2 72 376-447 208-283 (335)
329 PF12231 Rif1_N: Rap1-interact 43.5 4E+02 0.0087 27.7 23.6 62 389-450 146-207 (372)
330 PF14225 MOR2-PAG1_C: Cell mor 43.3 3.4E+02 0.0073 26.8 19.8 91 355-450 167-257 (262)
331 KOG3723|consensus 42.6 4.9E+02 0.011 28.5 14.1 96 385-489 163-265 (851)
332 PF14228 MOR2-PAG1_mid: Cell m 42.0 7.1E+02 0.015 30.2 32.5 64 383-448 510-573 (1120)
333 PF12463 DUF3689: Protein of u 41.9 1.3E+02 0.0028 30.4 8.2 64 349-412 112-179 (303)
334 PF12243 CTK3: CTD kinase subu 40.9 1.8E+02 0.0039 25.6 8.0 59 105-172 16-74 (139)
335 KOG1087|consensus 40.8 2.2E+02 0.0047 30.7 10.1 75 377-451 38-116 (470)
336 PHA02836 putative transmembran 40.1 31 0.00067 29.5 3.0 33 118-150 108-141 (153)
337 cd03562 CID CID (CTD-Interacti 38.7 2.3E+02 0.005 23.6 8.9 80 79-159 20-100 (114)
338 PF09268 Clathrin-link: Clathr 38.3 37 0.0008 19.9 2.2 21 137-157 2-22 (24)
339 KOG2229|consensus 37.5 3.5E+02 0.0077 29.2 10.7 133 390-530 251-388 (616)
340 PF01851 PC_rep: Proteasome/cy 37.4 77 0.0017 20.4 4.0 34 116-155 1-34 (35)
341 KOG1222|consensus 37.4 5.5E+02 0.012 27.6 21.8 50 99-150 347-398 (791)
342 COG5209 RCD1 Uncharacterized p 36.9 2.2E+02 0.0047 27.3 8.3 91 352-446 118-217 (315)
343 PF14812 PBP1_TM: Transmembran 36.9 11 0.00025 29.4 0.0 7 31-37 8-14 (81)
344 COG5110 RPN1 26S proteasome re 36.3 71 0.0015 34.5 5.6 65 95-165 448-514 (881)
345 PF13324 GCIP: Grap2 and cycli 36.0 1.1E+02 0.0023 30.5 6.7 48 95-143 201-248 (275)
346 KOG4500|consensus 35.9 5.6E+02 0.012 27.2 25.0 86 365-450 302-393 (604)
347 PF14663 RasGEF_N_2: Rapamycin 35.6 53 0.0012 27.8 3.9 30 138-167 8-37 (115)
348 PF10193 Telomere_reg-2: Telom 35.5 1.5E+02 0.0032 25.0 6.6 68 431-501 18-90 (114)
349 PF12531 DUF3731: DNA-K relate 35.5 4.3E+02 0.0093 25.8 13.7 111 376-493 30-148 (249)
350 KOG1048|consensus 35.3 1.8E+02 0.0038 32.9 8.6 92 420-514 235-339 (717)
351 KOG1848|consensus 35.1 9.5E+02 0.021 29.6 20.5 59 348-406 1067-1132(1610)
352 KOG2038|consensus 34.6 3E+02 0.0065 31.3 10.1 114 377-498 304-418 (988)
353 PF06371 Drf_GBD: Diaphanous G 34.5 3.5E+02 0.0077 24.5 11.4 58 347-405 129-186 (187)
354 KOG2122|consensus 34.5 1E+03 0.022 29.8 24.8 113 381-495 442-564 (2195)
355 PF04499 SAPS: SIT4 phosphatas 34.4 6.3E+02 0.014 27.4 14.1 60 376-448 33-93 (475)
356 cd05128 RasGAP_GAP1_like The G 34.2 5.1E+02 0.011 26.3 14.1 32 433-467 73-106 (315)
357 KOG0772|consensus 33.8 32 0.0007 36.5 2.6 17 22-38 106-122 (641)
358 KOG0943|consensus 33.8 31 0.00067 40.5 2.6 12 512-523 2741-2752(3015)
359 PF12074 DUF3554: Domain of un 32.9 1.8E+02 0.004 29.7 8.2 93 74-166 38-135 (339)
360 PF07539 DRIM: Down-regulated 31.5 1.9E+02 0.0041 25.5 6.8 79 197-283 16-97 (141)
361 PTZ00479 RAP Superfamily; Prov 31.1 4.6E+02 0.0099 27.7 10.3 64 432-501 97-160 (435)
362 KOG4199|consensus 30.8 6.1E+02 0.013 26.1 25.1 137 348-490 301-444 (461)
363 KOG1823|consensus 30.3 1.1E+03 0.024 29.0 26.5 75 111-189 535-611 (1364)
364 PF04546 Sigma70_ner: Sigma-70 30.2 67 0.0015 30.5 4.1 43 113-157 104-146 (211)
365 PF03542 Tuberin: Tuberin; In 30.2 6.4E+02 0.014 26.1 13.3 78 391-472 211-289 (356)
366 PF10025 DUF2267: Uncharacteri 29.9 84 0.0018 27.0 4.3 52 533-584 70-123 (125)
367 KOG2759|consensus 28.7 7.2E+02 0.016 26.3 19.7 275 77-407 98-439 (442)
368 cd03562 CID CID (CTD-Interacti 28.6 3.3E+02 0.0071 22.6 7.7 43 376-418 36-78 (114)
369 PF04078 Rcd1: Cell differenti 28.5 5.8E+02 0.013 25.1 13.6 92 75-166 65-167 (262)
370 PF12243 CTK3: CTD kinase subu 28.1 3.9E+02 0.0084 23.5 8.0 55 415-469 37-94 (139)
371 PF06025 DUF913: Domain of Unk 27.6 2.8E+02 0.0061 29.0 8.4 103 390-494 122-236 (379)
372 TIGR00985 3a0801s04tom mitocho 27.5 2.6E+02 0.0057 24.9 6.9 68 503-578 77-147 (148)
373 PHA03128 dUTPase; Provisional 25.6 26 0.00057 35.4 0.4 19 62-80 345-363 (376)
374 KOG1087|consensus 25.3 5.8E+02 0.013 27.5 10.2 76 96-171 37-116 (470)
375 PF14664 RICTOR_N: Rapamycin-i 25.2 7.9E+02 0.017 25.6 14.8 134 385-524 34-176 (371)
376 PRK04964 hypothetical protein; 25.2 2.2E+02 0.0048 21.0 4.8 43 449-491 15-61 (66)
377 PHA02836 putative transmembran 25.1 94 0.002 26.7 3.5 36 395-430 105-141 (153)
378 KOG3678|consensus 24.8 7.5E+02 0.016 26.5 10.5 143 377-524 180-336 (832)
379 PF13925 Katanin_con80: con80 23.4 1.5E+02 0.0032 26.9 4.8 41 93-133 65-105 (164)
380 PF08569 Mo25: Mo25-like; Int 23.4 8.2E+02 0.018 25.1 15.1 104 376-481 163-274 (335)
381 PF09759 Atx10homo_assoc: Spin 23.4 2.6E+02 0.0056 23.2 5.7 55 114-170 3-62 (102)
382 PF05327 RRN3: RNA polymerase 23.3 1E+03 0.022 26.4 12.3 125 352-494 54-197 (563)
383 PF06786 UPF0253: Uncharacteri 23.1 2.5E+02 0.0055 20.7 4.8 43 449-491 15-61 (66)
384 PF14631 FancD2: Fanconi anaem 22.9 2.6E+02 0.0056 34.8 8.0 85 369-458 429-513 (1426)
385 PF14222 MOR2-PAG1_N: Cell mor 22.8 1.1E+03 0.023 26.2 20.1 79 353-433 447-525 (552)
386 PF09759 Atx10homo_assoc: Spin 22.8 2.2E+02 0.0048 23.6 5.2 57 393-450 2-62 (102)
387 KOG0929|consensus 22.1 1.6E+03 0.035 28.1 16.3 110 294-414 1192-1306(1514)
388 KOG3130|consensus 22.1 40 0.00087 34.6 0.9 15 54-68 272-286 (514)
389 KOG2475|consensus 22.0 48 0.001 35.4 1.5 26 2-28 115-140 (587)
390 COG5369 Uncharacterized conser 21.8 4.5E+02 0.0097 28.7 8.3 116 350-471 405-528 (743)
391 PF10441 Urb2: Urb2/Npa2 famil 21.8 7E+02 0.015 23.7 14.0 28 564-591 186-213 (223)
392 COG5657 CSE1 CAS/CSE protein i 20.7 1.4E+03 0.03 26.8 31.0 51 78-128 104-154 (947)
393 PF01417 ENTH: ENTH domain; I 20.4 4.5E+02 0.0097 22.3 7.1 66 101-171 7-75 (125)
394 KOG3723|consensus 20.4 4.5E+02 0.0098 28.8 8.1 81 83-167 183-266 (851)
No 1
>KOG2023|consensus
Probab=100.00 E-value=3.7e-122 Score=933.42 Aligned_cols=553 Identities=65% Similarity=1.138 Sum_probs=523.1
Q ss_pred CCcHHHHHHhcCCcccCCCCCCCCCCCCcccccccccccccccccCCCCCCCCCCCCccCCCCCCCccccchHHHHHHHH
Q psy9904 3 LSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAA 82 (592)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~Rk~aa~~ 82 (592)
+|||+|+.+|+ ++|||+.+|||||||||||||+|.++.+.. . +++||+||++||||..++||+|||+|++
T Consensus 309 ~Ysd~D~~LL~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~--------~-~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 309 VYSDDDIILLK-NNEEDESVPDREEDIKPRFHKSKEHGNGED--------A-DDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred ccccccHHHhc-CccccccCCchhhhccchhhhchhccCccc--------c-ccccccccccccccccccccHhhccHHH
Confidence 79999999999 559999999999999999999999877521 1 2223333444577899999999999999
Q ss_pred HHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHH
Q psy9904 83 LDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTL 162 (592)
Q Consensus 83 L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL 162 (592)
||+||+.+|++++|.++|++++.+.+++|.+|||+++|||+|||||++++.||++.++|+++++|.|.+|.||++|||||
T Consensus 379 LDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 379 LDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHccc---cCCcc-----c---h-----hhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 163 SRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP-----H---L-----NELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 163 ~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq-----~---l-----~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
+||+.|+..+...+||.|+|..|++++ ||+|| + | ++|+||+..|| +++++++ ++|
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL---~~l~~af-----~kY- 529 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL---DQLVFAF-----GKY- 529 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH---HHHHHHH-----HHH-
Confidence 999999988777899999999999999 88998 1 2 79999999999 9999999 999
Q ss_pred hhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q psy9904 227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATA 306 (592)
Q Consensus 227 ~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~ 306 (592)
|.||++++|||||++|+++|..+.+|.|++.+||+|+++|+.++|+++++++++||+++|+.+
T Consensus 530 -----------------Q~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~A 592 (885)
T KOG2023|consen 530 -----------------QKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASA 592 (885)
T ss_pred -----------------hhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh
Q psy9904 307 LQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM 386 (592)
Q Consensus 307 ~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l 386 (592)
+|.+|+||++++|+||+.+++++++.... .+++..++.+|++|+++++|+++++++++|.++.|+++++.++.++++|+
T Consensus 593 L~~gF~P~~~~Vy~Rc~~il~~t~q~~~~-~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~ 671 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFRILQKTLQLLAK-VQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL 671 (885)
T ss_pred HhccccccCHHHHHHHHHHHHHHHHHHHh-ccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence 99999999999999999999999665443 34455788899999999999999999999999999999899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy9904 387 QDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII 466 (592)
Q Consensus 387 ~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~ 466 (592)
+|+-++|||++|+++|+++++|.+++.|++..++|.+..++++++.++++||+|++|+|+.++|.++++|+..++..|+.
T Consensus 672 ~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ 751 (885)
T KOG2023|consen 672 QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLIT 751 (885)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--------HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy9904 467 IINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFC 538 (592)
Q Consensus 467 ~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--------~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~~ 538 (592)
+++.+..+.++.+|.++||||+|..||+.++| ||..|++++|++||++||+|||.|+..||.++...|+.||
T Consensus 752 iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c 831 (885)
T KOG2023|consen 752 IINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFIC 831 (885)
T ss_pred HhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHH
Confidence 99999889999999999999999999998776 9999999999999999999999999999999999999999
Q ss_pred HHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904 539 DAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592 (592)
Q Consensus 539 ~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 592 (592)
.+|++|.+|.++++.+|.++|+|||+++|+.+|++|..+|||..+++|++.|||
T Consensus 832 ~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y~v 885 (885)
T KOG2023|consen 832 DAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAFYGV 885 (885)
T ss_pred HHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999997
No 2
>KOG2171|consensus
Probab=100.00 E-value=6.7e-50 Score=433.39 Aligned_cols=510 Identities=21% Similarity=0.298 Sum_probs=396.3
Q ss_pred HHHHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHH
Q psy9904 77 KCSAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVR 155 (592)
Q Consensus 77 k~aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR 155 (592)
..|.++||++|.++| +.++|++++++.++++|++|+.|+||++||++++|||.+.+.+++++|+|+++++|+||+|+||
T Consensus 327 ~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 457789999999998 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC-------------------------------------------CccchHHHHHHHHccc---
Q psy9904 156 AITCWTLSRYSHWVVSQP-------------------------------------------HDSYLKPLMTEMLGCM--- 189 (592)
Q Consensus 156 ~~a~~aL~~l~~~~~~~~-------------------------------------------~~~~l~~ll~~Ll~~l--- 189 (592)
++||.|+|++++.+++.. ..+|++.+|+.++..+
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999886531 2344555554333333
Q ss_pred -cCCcc--------------------chhhhHHHHHHhcCch----hhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh
Q psy9904 190 -NGMVP--------------------HLNELVPFLITCLSDK----KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244 (592)
Q Consensus 190 -~~~vq--------------------~l~~l~p~l~~il~d~----~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~ 244 (592)
++.|+ +++.++|+|..++... ...+|.-+..+++-.+..+|+++|.|+..++|+-
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliql 566 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQL 566 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHH
Confidence 12222 2366777777776432 2334555555566667778888899988888863
Q ss_pred hhhH------------HHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcc-----c------------------C
Q psy9904 245 HKNL------------LILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILK-----D------------------E 289 (592)
Q Consensus 245 ~~~l------------~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~-----d------------------~ 289 (592)
.-.+ ...+.+++.+|...|++|. ||++.+||+++...+... | +
T Consensus 567 l~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~--p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~ 644 (1075)
T KOG2171|consen 567 LLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFA--PFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELG 644 (1075)
T ss_pred HHhhcccchhhccccHHHHHHHHHHHHHHhchhhH--hHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccC
Confidence 2211 3567799999999999998 999999999997642110 0 0
Q ss_pred Ccc-----------chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH-------------------------
Q psy9904 290 DKD-----------LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQH------------------------- 333 (592)
Q Consensus 290 ~~~-----------~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~------------------------- 333 (592)
+++ ...++++|+.++..++.+|.||.+++++..++.+.-+++..
T Consensus 645 ~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~ 724 (1075)
T KOG2171|consen 645 DKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE 724 (1075)
T ss_pred CceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 110 11467789999999999999999999884444332111110
Q ss_pred -----Hhh------------------------------------------------------------cC-----CCCCC
Q psy9904 334 -----MAN------------------------------------------------------------SQ-----NPEQF 343 (592)
Q Consensus 334 -----~~~------------------------------------------------------------~~-----~~~~~ 343 (592)
|.. ++ +.++.
T Consensus 725 ~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~ 804 (1075)
T KOG2171|consen 725 YLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDD 804 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 000 00 00000
Q ss_pred --------CCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhh
Q psy9904 344 --------DAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPC 415 (592)
Q Consensus 344 --------~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~ 415 (592)
++.|..+...+.+.+..++++.+.+|.|++ .++.|.+...+....+.-|+.+.+++++++..+++...+|
T Consensus 805 d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f--~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~ 882 (1075)
T KOG2171|consen 805 DIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFF--ENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKY 882 (1075)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchH
Confidence 011223445677888888999999999999 6899999999987776669999999999999999999999
Q ss_pred hhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCC----CchHHHHHHHHHHHhhhh
Q psy9904 416 ISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNT----PKTLLENTAITIGRLGYV 491 (592)
Q Consensus 416 l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~----~~~v~~na~~~lgrl~~~ 491 (592)
.+.++|.++..+.+.+++||++|.+++|.+|...|..++|.+...++.|..+++.+.. +..+.+|+++||+|+...
T Consensus 883 ~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~ 962 (1075)
T KOG2171|consen 883 KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLF 962 (1075)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987643 467889999999999998
Q ss_pred CCCc-----hHh-HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhh----hHHHHHHHhhccC----CCchhHHHHHHH
Q psy9904 492 CPHD-----VAP-LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQ----EFIFFCDAVASWS----TPKEDLKEMFHK 557 (592)
Q Consensus 492 ~~~~-----~~p-~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~----~~~~~~~~i~~~~----~~~~~~~~~~~~ 557 (592)
++.. +.| |++.||...|.+|....|+.||.|++.|+..+.. +++.|+.+++.-. .+.++...++..
T Consensus 963 ~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ 1042 (1075)
T KOG2171|consen 963 NPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRSTLARVIE 1042 (1075)
T ss_pred CCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccchHHHHHH
Confidence 8753 334 9999999999999999999999999987766554 6777777766432 222333337788
Q ss_pred HHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904 558 ILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592 (592)
Q Consensus 558 ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 592 (592)
+++.|.. +.++|.+.+++|||+++++|++.++.
T Consensus 1043 ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~~ 1075 (1075)
T KOG2171|consen 1043 ILKQFLA--PPSQFAALLATLPPDQQQALQAVLNL 1075 (1075)
T ss_pred HHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 8888887 44589999999999999999998863
No 3
>KOG2023|consensus
Probab=100.00 E-value=1.4e-37 Score=317.30 Aligned_cols=390 Identities=25% Similarity=0.403 Sum_probs=313.8
Q ss_pred CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcc
Q psy9904 109 HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGC 188 (592)
Q Consensus 109 ~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~ 188 (592)
.+|+.|+++.-+|+.++...++. .++.++|.+.+.|..++|.||+++..|||++||.+-
T Consensus 367 ~dWNLRkCSAAaLDVLanvf~~e---lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM------------------ 425 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLANVFGDE---LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM------------------ 425 (885)
T ss_pred ccccHhhccHHHHHHHHHhhHHH---HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh------------------
Confidence 47999999999999999988864 578899999999999999999999999999998653
Q ss_pred ccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhh--------H-HHHHHHHHHHH
Q psy9904 189 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKN--------L-LILYDAIGTLA 259 (592)
Q Consensus 189 l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~--------l-~~~~dai~~la 259 (592)
+..+++|++|+||+...|+|..++||.++||||++|++|+.++..+.||.|+|+...+ + ..++.|++++-
T Consensus 426 -~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 426 -QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred -hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2346678999999999999999999999999999999999998888999999975321 1 27789999999
Q ss_pred HHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 260 DSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQN 339 (592)
Q Consensus 260 ~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~ 339 (592)
+..|+++. ||+..|+..|...++. .+.+++..++.|+|.+|..+|.+.-. +. -+.+|.+.|-++|..
T Consensus 505 E~A~~eLV--p~l~~IL~~l~~af~k--YQ~KNLlILYDAIgtlAdsvg~~Ln~---~~---YiqiLmPPLi~KW~~--- 571 (885)
T KOG2023|consen 505 EEAGEELV--PYLEYILDQLVFAFGK--YQKKNLLILYDAIGTLADSVGHALNK---PA---YIQILMPPLIEKWEL--- 571 (885)
T ss_pred HhccchhH--HHHHHHHHHHHHHHHH--HhhcceehHHHHHHHHHHHHHHhcCc---HH---HHHHhccHHHHHHHh---
Confidence 99999998 8999999999988864 46677888999999999999987543 11 134444455444432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhcc--CchHHHHHHHhC------------CCChHHHHHHHHHHHHHH
Q psy9904 340 PEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSN--SNIMHLLYQCMQ------------DPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 340 ~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~--~~l~~~l~~~l~------------~~~~~vR~~a~~~l~~la 405 (592)
..++|+++ ...++|+++++.++|..|.||.+. ..++.++.+|++ .++.+.-..++.+++.++
T Consensus 572 ---lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 572 ---LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred ---cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence 22346765 578999999999999999999742 234555555442 134566678999999999
Q ss_pred HHchhhhhhhhh--hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHH
Q psy9904 406 KACFSHVHPCIS--DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAI 483 (592)
Q Consensus 406 ~~~~~~~~~~l~--~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~ 483 (592)
+.+|+++.+.+. .++..+++++.|+-++||++|...||+++..+.+.+.|++..+++.+..-++.+. -+++.||+|
T Consensus 648 egLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~--isv~nNA~W 725 (885)
T KOG2023|consen 648 EGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPEN--ISVCNNAIW 725 (885)
T ss_pred HHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhh--chHHHHHHH
Confidence 999999998875 5999999999999999999999999999999999999999999998886655433 789999999
Q ss_pred HHHHhhhhCCCchHhHhh----hcccC-C-CchH---hHHHHHHHHHHHhhCchhhhhhHHHHHH
Q psy9904 484 TIGRLGYVCPHDVAPLCS----SLRNI-R-DNEE---KDSAFRGMCAMITVNPGGVVQEFIFFCD 539 (592)
Q Consensus 484 ~lgrl~~~~~~~~~p~~~----~L~~~-~-d~~E---k~~a~~~l~~li~~~p~~~~~~~~~~~~ 539 (592)
++|.|+...+....||+. .|..+ + .+.. -+...-++++|...+|..+.+++..|..
T Consensus 726 AiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~ 790 (885)
T KOG2023|consen 726 AIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMR 790 (885)
T ss_pred HHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHH
Confidence 999999887666555443 33222 1 1111 2346678999999999998888776643
No 4
>KOG1241|consensus
Probab=100.00 E-value=7.7e-37 Score=317.02 Aligned_cols=441 Identities=18% Similarity=0.337 Sum_probs=347.5
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCCh
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
|++-|+|+.||..+|+.+|++++|+++||+++.+++++|+.|++|++|+|.+.+|.. +.+.+..++.+|.++..+.||.
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999999999999965 6778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 230 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~-~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~ 230 (592)
-.||.+|.|+|||+++.+.... +..++.+++..++..+ +| ++.+...+||++.++++..
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL------------------~D-ePrva~N~CWAf~~Laea~- 479 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL------------------ND-EPRVASNVCWAFISLAEAA- 479 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh------------------hh-CchHHHHHHHHHHHHHHHH-
Confidence 9999999999999999987543 5567777777776665 22 5667788999998886432
Q ss_pred cCCcccchHHHHHhhhhHHHHHHHHHHHHHHhc-ccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHh
Q psy9904 231 SQPHDSYLKPLMTEHKNLLILYDAIGTLADSVG-HHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQ 308 (592)
Q Consensus 231 ~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g-~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g 308 (592)
+++.. +. | .+... ||++.|+..|++.-+..+.++.++ ..++++|+.+.+...
T Consensus 480 ---------------------~eA~~---s~-~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 480 ---------------------YEAAV---SN-GQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred ---------------------HHhcc---CC-CCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 22111 11 1 12222 688889999887644332233333 689999999999988
Q ss_pred hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH
Q psy9904 309 AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD----KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ 384 (592)
Q Consensus 309 ~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d----~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~ 384 (592)
....|-...++..++.-|.++++.... +..| .++....+.+|..+.+.+|+++.++. +.+|.+++.
T Consensus 534 ~~vy~~v~~~~l~il~kl~q~i~~~~l--------~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~--d~iM~lflr 603 (859)
T KOG1241|consen 534 DDVYPMVQKLTLVILEKLDQTISSQIL--------SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS--DQIMGLFLR 603 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH--HHHHHHHHH
Confidence 887776666655555556666653221 1122 34556788899999999999998887 789999999
Q ss_pred HhCC-CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc-CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Q psy9904 385 CMQD-PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL-NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVIN 462 (592)
Q Consensus 385 ~l~~-~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l-~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~ 462 (592)
.++. ++.-+.+.||..++.++.++|+.|..|++.+.|.|...| +..++.||..|+..+|++++.++.+|.||...++.
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt 683 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMT 683 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9987 567789999999999999999999999999999999999 66789999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhh-------hcccCC-C---ch--H-----h---HHHHHHHHH
Q psy9904 463 QLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCS-------SLRNIR-D---NE--E-----K---DSAFRGMCA 521 (592)
Q Consensus 463 ~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~-------~L~~~~-d---~~--E-----k---~~a~~~l~~ 521 (592)
.|+..|+++..+|+||-.+.++.|.|+..-+..+.||+. .-.... | .+ + | ..||.|+..
T Consensus 684 ~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~q 763 (859)
T KOG1241|consen 684 VLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQ 763 (859)
T ss_pred HHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777777443 111111 1 11 1 2 237788877
Q ss_pred HHhh--CchhhhhhHHHHHHHhhc---cCCCchhHHHHHHHHHHHHHhccChh
Q psy9904 522 MITV--NPGGVVQEFIFFCDAVAS---WSTPKEDLKEMFHKILHGFRTQVGDE 569 (592)
Q Consensus 522 li~~--~p~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~ll~~~~~~~~~~ 569 (592)
-+.. .+..+.+++++|+..+.+ -...++.+......+|..+..++|++
T Consensus 764 glk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 764 GLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 7764 334455666666655544 33445678888999999888888843
No 5
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-31 Score=266.66 Aligned_cols=438 Identities=13% Similarity=0.224 Sum_probs=328.4
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCCh
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
|++.++|+.||..+++..|+.++.+++.|+++.+++++|..|++|++|+|.+.+|.. ..+.+++++.+|.++..+.|+.
T Consensus 342 Wn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 342 WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred cchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 999999999999999999999999999999999999999999999999999999855 5667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 230 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~-~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~ 230 (592)
-.|+++|.||+|+++.++.... ...++++.+...+..+ ++ .+++...+||+..+++..
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl-----------------~D--~p~~~~ncsw~~~nlv~h-- 480 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGL-----------------MD--CPFRSINCSWRKENLVDH-- 480 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhh-----------------hc--cchHHhhhHHHHHhHHHh--
Confidence 9999999999999999886521 2345555555544433 21 344556677887766321
Q ss_pred cCCcccchHHHHHhhhhHHHHHHHHHHHHHHh---cccCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHH
Q psy9904 231 SQPHDSYLKPLMTEHKNLLILYDAIGTLADSV---GHHLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATA 306 (592)
Q Consensus 231 ~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~---g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~ 306 (592)
++.++ .+-+. ++++.|+..|+..-+.. +++.+ +..++++||.+...
T Consensus 481 ---------------------------~a~a~~~~~S~l~--~fY~ai~~~Lv~~t~~~-~Ne~n~R~s~fsaLgtli~~ 530 (858)
T COG5215 481 ---------------------------IAKAVREVESFLA--KFYLAILNALVKGTELA-LNESNLRVSLFSALGTLILI 530 (858)
T ss_pred ---------------------------hhhhhccccchhH--HHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhh
Confidence 22222 23333 78888999998765443 34433 36789999998877
Q ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHH
Q psy9904 307 LQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD----KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL 382 (592)
Q Consensus 307 ~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d----~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l 382 (592)
......|.+..++.-.++-|.+++.-... ..+.+| .++....+.+|..+++..+.++++.- +++|.++
T Consensus 531 ~~d~V~~~~a~~~~~~~~kl~~~isv~~q------~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~--D~lm~Lf 602 (858)
T COG5215 531 CPDAVSDILAGFYDYTSKKLDECISVLGQ------ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE--DQLMELF 602 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH--HHHHHHH
Confidence 66665554444444334444444321100 011122 34556778888888888888777764 5799999
Q ss_pred HHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHH
Q psy9904 383 YQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVI 461 (592)
Q Consensus 383 ~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il 461 (592)
+..++.. ...+-...|..++.++..+++.|..|++.++|.+.+.++..++.|++.|+..+|+++..++.+|.+|...++
T Consensus 603 ~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~m 682 (858)
T COG5215 603 IRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLM 682 (858)
T ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999876 455677889999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhh-------hcccCCC-ch-----H-hHH-------HHHHHH
Q psy9904 462 NQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCS-------SLRNIRD-NE-----E-KDS-------AFRGMC 520 (592)
Q Consensus 462 ~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~-------~L~~~~d-~~-----E-k~~-------a~~~l~ 520 (592)
..|+..|+++..++.++-.+.++.|.|+..-+..+.+|+. .-.+++. +. + +.. |+-|++
T Consensus 683 s~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~ 762 (858)
T COG5215 683 SSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIG 762 (858)
T ss_pred HHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999888999999999999999887777777442 2222221 11 1 222 555665
Q ss_pred HHHhhCchhhhhhHHHHHHHhhc---cCCCchhHHHHHHHHHHHHHhccChh
Q psy9904 521 AMITVNPGGVVQEFIFFCDAVAS---WSTPKEDLKEMFHKILHGFRTQVGDE 569 (592)
Q Consensus 521 ~li~~~p~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~ll~~~~~~~~~~ 569 (592)
.-.+..|..+.|.+..++.-|.. -.+.+++..+....+|..+..++|.+
T Consensus 763 ~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 763 DSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred hhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 55555567777777666665543 33344566677888888877777754
No 6
>KOG2171|consensus
Probab=99.96 E-value=8.7e-27 Score=254.06 Aligned_cols=433 Identities=19% Similarity=0.253 Sum_probs=315.5
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-++|+.-+..++.+|+...++-||.+++++.+..+|+++..|+.|++.|..+.+..+...++|++.+.+.+.+++.|++.
T Consensus 94 ~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS 173 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc
Confidence 45999999999999998877799999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCccchHHHHHHHHccc------------------------------------------
Q psy9904 153 LVRAITCWTLSRYSHWVVS-QPHDSYLKPLMTEMLGCM------------------------------------------ 189 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~-~~~~~~l~~ll~~Ll~~l------------------------------------------ 189 (592)
.||.+|..|++.|+..+.. ......+..+++.++..+
T Consensus 174 ~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l 253 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSL 253 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 8999999999999988741 111112222222222111
Q ss_pred ----cC-------------------------C------------------------------------------------
Q psy9904 190 ----NG-------------------------M------------------------------------------------ 192 (592)
Q Consensus 190 ----~~-------------------------~------------------------------------------------ 192 (592)
|+ |
T Consensus 254 ~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 254 EIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence 00 0
Q ss_pred -----------c------------c---------------------------chhhhHHHHHHhcCchhhHHHHHHHhhh
Q psy9904 193 -----------V------------P---------------------------HLNELVPFLITCLSDKKALVRAITCWTL 222 (592)
Q Consensus 193 -----------v------------q---------------------------~l~~l~p~l~~il~d~~~~vr~~a~~~L 222 (592)
| | .|++++|.+.+.++|+++.||..||.++
T Consensus 334 DrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 334 DRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 0 0 0377888888899999999999999999
Q ss_pred hhhhhhhccC---Ccccc----hHHHHHhhhhHH---HHHHHHHHH-HHHhcccCCChhhHhhhhHHHHHHHhhcccCCc
Q psy9904 223 SRYSHWVVSQ---PHDSY----LKPLMTEHKNLL---ILYDAIGTL-ADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK 291 (592)
Q Consensus 223 ~~~a~~~~~~---~~~~y----~~~~~~~~~~l~---~~~dai~~l-a~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~ 291 (592)
+.++...+.+ .+..+ +...+....+-+ .+..|+-.+ .++.++.+. ||++.+|.+++..+.. .+.+
T Consensus 414 gQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~--pYLd~lm~~~l~~L~~--~~~~ 489 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE--PYLDGLMEKKLLLLLQ--SSKP 489 (1075)
T ss_pred HhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHhc--CCch
Confidence 9987655421 11112 222222223322 122222223 345556665 9999999976665431 1222
Q ss_pred cc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhh-hhh
Q psy9904 292 DL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLD-MHI 369 (592)
Q Consensus 292 ~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg-~~~ 369 (592)
.+ ..+..+|+++|.+.+..|.||++.+ |+.+.+.|++. .+.+.+..|+..++|++.++.++| +.|
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~~----Mp~L~~~L~n~---------~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDRL----MPLLKNFLQNA---------DDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHHH----HHHHHHHHhCC---------CchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 22 6789999999999999999998855 56777776531 012356778999999999999999 569
Q ss_pred HhhhccCchHHHHHHH---hCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC--------C--------
Q psy9904 370 DSLVSNSNIMHLLYQC---MQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP--------D-------- 430 (592)
Q Consensus 370 ~~~~~~~~l~~~l~~~---l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~--------~-------- 430 (592)
.|+. .+++++++.. -.+.+...|...++.++.+|+.+|++|.||++.+||.+++..+- +
T Consensus 557 ~~~a--~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~ 634 (1075)
T KOG2171|consen 557 LPLA--EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQD 634 (1075)
T ss_pred hHhH--HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccc
Confidence 9998 6899998887 34456778999999999999999999999999999999987531 0
Q ss_pred -------------Chh-------HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 431 -------------LIS-------VCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 431 -------------~~~-------v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
... -+..||-+||+++...+..|.||+.++++..+..++- .....||..++.++.++..
T Consensus 635 ~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f-~fhdgVR~aa~~~~p~ll~ 713 (1075)
T KOG2171|consen 635 LDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKF-YFHDGVRKAAAESMPQLLT 713 (1075)
T ss_pred cccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Confidence 011 2468999999999999999999999999966666653 2347888888888877653
Q ss_pred -------hCCCchHh-Hhhhccc----CCCchHh---HHHHHHHHHHHhh
Q psy9904 491 -------VCPHDVAP-LCSSLRN----IRDNEEK---DSAFRGMCAMITV 525 (592)
Q Consensus 491 -------~~~~~~~p-~~~~L~~----~~d~~Ek---~~a~~~l~~li~~ 525 (592)
..|..+.+ |....+. +.+..|+ .+.+.+|...++.
T Consensus 714 ~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~ 763 (1075)
T KOG2171|consen 714 CALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEV 763 (1075)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Confidence 23444444 5433222 3333343 3467888888864
No 7
>KOG0213|consensus
Probab=99.92 E-value=2.2e-22 Score=208.20 Aligned_cols=424 Identities=19% Similarity=0.245 Sum_probs=306.6
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
.||...+++.+++|..+| +|.++|+|+..+.|. +|+.|+.++....+|+.-.+-.+.+|+..++..+-++|.|.+.
T Consensus 491 YVRnttarafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~q 567 (1172)
T KOG0213|consen 491 YVRNTTARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQ 567 (1172)
T ss_pred HHHHHHHHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccch
Confidence 499999999999999999 789999999999987 9999999999999999877667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc----CCccchhhhHHHHHHhc--------------------C
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN----GMVPHLNELVPFLITCL--------------------S 208 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~----~~vq~l~~l~p~l~~il--------------------~ 208 (592)
.||..|+.||+.+++...+ ...+.|+.++.-|.+.+. +...+|-.-+.|+.+++ .
T Consensus 568 kVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~ 646 (1172)
T KOG0213|consen 568 KVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG 646 (1172)
T ss_pred hhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence 9999999999999998877 456677888887777662 11222222222333222 2
Q ss_pred chhhHHHHHHHhhhhhhhhhhccCCc-------ccchHHHHH-----hhhhHHHHHHHHHHHHHHhcccCCChhhHhhhh
Q psy9904 209 DKKALVRAITCWTLSRYSHWVVSQPH-------DSYLKPLMT-----EHKNLLILYDAIGTLADSVGHHLNKPEYISLLM 276 (592)
Q Consensus 209 d~~~~vr~~a~~~L~~~a~~~~~~~~-------~~y~~~~~~-----~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lm 276 (592)
.++...+.+....+++.+...|-++- ..+|.-... ..+|.+.+.++-.++|..+|.. +.+..++
T Consensus 647 sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----~~v~R~v 722 (1172)
T KOG0213|consen 647 SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD----PIVSRVV 722 (1172)
T ss_pred CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch----HHHHHHh
Confidence 22222223333333333332221110 111111111 1245556677777888888876 4444444
Q ss_pred HHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHH
Q psy9904 277 PPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355 (592)
Q Consensus 277 p~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~al 355 (592)
..+ +|+... +....+.++.+...+|..= +-+..-++++.-|...++... .+| ...+
T Consensus 723 ~~l-------kde~e~yrkm~~etv~ri~~~lg~~d--iderleE~lidgil~Afqeqt----------t~d----~vml 779 (1172)
T KOG0213|consen 723 LDL-------KDEPEQYRKMVAETVSRIVGRLGAAD--IDERLEERLIDGILYAFQEQT----------TED----SVML 779 (1172)
T ss_pred hhh-------ccccHHHHHHHHHHHHHHHhcccccc--ccHHHHHHHHHHHHHHHHhcc----------cch----hhhh
Confidence 333 233332 3567888888888777521 123333455555555554310 111 3567
Q ss_pred HHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh-hhhhhhhHHHHHHhccCCCChhH
Q psy9904 356 DLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH-VHPCISDFMPILGQNLNPDLISV 434 (592)
Q Consensus 356 d~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~~~~v 434 (592)
..++.++.++|....||+ +++...++..|+++++.||+.|..+++.++..++.. -...+..+--+|++.|..++++|
T Consensus 780 ~gfg~V~~~lg~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEv 857 (1172)
T KOG0213|consen 780 LGFGTVVNALGGRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEV 857 (1172)
T ss_pred hhHHHHHHHHhhccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHH
Confidence 899999999999999999 899999999999999999999999999999877542 12345666678899999999999
Q ss_pred HHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--Hhhhccc----CC
Q psy9904 435 CNNATWAIGEISVKLG-EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--LCSSLRN----IR 507 (592)
Q Consensus 435 ~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--~~~~L~~----~~ 507 (592)
--..+.++-.|....| ..+.|-+..++|.|.++|++.+ ..|.+|.+..+|+|+...|+.+.+ |++.-.. ++
T Consensus 858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknrh--eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH--EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhH--HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988887 6789999999999999999876 789999999999999999998776 7653222 11
Q ss_pred -CchH-hHHHHHHHHHHHh-hCchhhhh
Q psy9904 508 -DNEE-KDSAFRGMCAMIT-VNPGGVVQ 532 (592)
Q Consensus 508 -d~~E-k~~a~~~l~~li~-~~p~~~~~ 532 (592)
.+.| |+.|..+|+.+.+ .+|+.++.
T Consensus 936 ahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 936 AHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 2333 7789999999996 69987653
No 8
>KOG1241|consensus
Probab=99.92 E-value=2.7e-22 Score=209.33 Aligned_cols=402 Identities=19% Similarity=0.285 Sum_probs=288.5
Q ss_pred ccchHHHHHHHHHHHHHhhhch----hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh--hhHhhHHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE----ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV--PHLNELVPFLI 144 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~----~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~--~~l~~lvp~l~ 144 (592)
.+|.-|.+|+.+++.+-.+..+ .+++..+|.+...+.|+.-.+|.++.+.||.|++++++.+. .|+..+++.++
T Consensus 376 pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 5799999999999999887653 46678888888888899888899999999999999986443 67899999999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcC--------CCccchHHHHHHHHcccc--------CCccchhhhHHHHHHhcC
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQ--------PHDSYLKPLMTEMLGCMN--------GMVPHLNELVPFLITCLS 208 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~--------~~~~~l~~ll~~Ll~~l~--------~~vq~l~~l~p~l~~il~ 208 (592)
+.|+|. |+|-..+||++..+++.+.+. ...+|++.++..|++..+ -|+.+++.|...+...-+
T Consensus 456 ~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 456 EGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 999996 999999999999999877532 234689999999987652 122222222221111111
Q ss_pred chhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHH-HHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcc
Q psy9904 209 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLL-ILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILK 287 (592)
Q Consensus 209 d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~-~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~ 287 (592)
+-.+.+..+...++.++-..+.++. ..|-+. .+...+. .++.+++.+-..+|+++. ++.+.+|..+++.+++ +
T Consensus 535 ~vy~~v~~~~l~il~kl~q~i~~~~-l~~~dr--~q~~eLQs~Lc~~Lq~i~rk~~~~~~--~~~d~iM~lflri~~s-~ 608 (859)
T KOG1241|consen 535 DVYPMVQKLTLVILEKLDQTISSQI-LSLADR--AQLNELQSLLCNTLQSIIRKVGSDIR--EVSDQIMGLFLRIFES-K 608 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccHhhH--HHHHHHHHHHHHHHHHHHHHccccch--hHHHHHHHHHHHHHcC-C
Confidence 1111222222222222111110000 000000 0111122 456788888889999775 8999999999998875 1
Q ss_pred cCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh
Q psy9904 288 DEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM 367 (592)
Q Consensus 288 d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~ 367 (592)
.+.--...++-+++.++.++|++|..|.+.+. +.+..-|... .|......+..+++.++++++.
T Consensus 609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~----pyL~~gL~n~------------~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK----PYLLMGLSNF------------QEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHhHHHHHHHHH----HHHHHHhhcc------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 11111256888999999999999999988664 3444333221 1344556788999999999999
Q ss_pred hhHhhhccCchHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc--CCC--C-------hhH
Q psy9904 368 HIDSLVSNSNIMHLLYQCMQDP--MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL--NPD--L-------ISV 434 (592)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~--~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l--~~~--~-------~~v 434 (592)
.|.||. ..+|..|++||+++ ..+|+-..++++||++-.+|.+|.+|+..+||.+.+.- ..+ + .++
T Consensus 673 ~i~py~--d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 673 DILPYC--DELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred hhhhHH--HHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 999998 78999999999876 35788899999999999999999999999999997653 211 1 257
Q ss_pred HHHHHHHHHHHHHhcC-----chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchH
Q psy9904 435 CNNATWAIGEISVKLG-----EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA 497 (592)
Q Consensus 435 ~~~A~~~Lg~ia~~~~-----~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~ 497 (592)
|++++-+..-|...++ ..+.||++.|+..+-.+-..++....+...|++-||.++...|..+.
T Consensus 751 Re~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 751 REGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 8888877776666655 24679999999988888777776677888999999999988876543
No 9
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.84 E-value=1.3e-18 Score=177.43 Aligned_cols=418 Identities=18% Similarity=0.192 Sum_probs=276.6
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
.||...+++.+++|..+| ++.++|+|+....|. +|..|+.++....+|++-.+-.+.+|+..++..+-++|+|.+.
T Consensus 296 YVRnvt~ra~~vva~alg---v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 296 YVRNVTGRAVGVVADALG---VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred HHHHHHHHHHHHHHHhhC---cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 599999999999999999 778899999988886 8999999999999999988877889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc-CCc---cchhhhHHHHHHhcCchh---hHHHHHHHhhhhhh
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN-GMV---PHLNELVPFLITCLSDKK---ALVRAITCWTLSRY 225 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~-~~v---q~l~~l~p~l~~il~d~~---~~vr~~a~~~L~~~ 225 (592)
.||--|+.+|+.+++...+ ...+.|..++.-|.+... .+- .+|-.-+.++.+++. ++ +..|...--.+.-|
T Consensus 373 ~vRi~tA~alS~lae~~~P-ygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~-peYa~h~tre~m~iv~ref 450 (975)
T COG5181 373 FVRIDTANALSYLAELVGP-YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS-PEYACHDTREHMEIVFREF 450 (975)
T ss_pred eeeehhHhHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCC-hHhhhhhHHHHHHHHHHHh
Confidence 9999999999999999877 456677777777776651 111 111111112222231 11 11111100000000
Q ss_pred hhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhh-HhhhhHHHHHHHh-hcccCCccc-hHHHHHHHH
Q psy9904 226 SHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEY-ISLLMPPLIQKWN-ILKDEDKDL-FPLLECLSS 302 (592)
Q Consensus 226 a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y-~~~lmp~L~~~~~-~~~d~~~~~-~~~~e~l~~ 302 (592)
.+ | . ..+....-.+-..|+++|..-. .| -+.+.|.+++.+. .....++.. ..+..+-..
T Consensus 451 ----~s----p-------d-eemkk~~l~v~~~C~~v~~~tp--~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvi 512 (975)
T COG5181 451 ----KS----P-------D-EEMKKDLLVVERICDKVGTDTP--WKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVI 512 (975)
T ss_pred ----CC----c-------h-hhcchhHHHHHHHHhccCCCCH--HHHHHhhcHHhhchHHHhhhcccccccceeehhHHH
Confidence 00 0 0 0011112234456677776543 44 4778888888643 212223222 233333333
Q ss_pred HHHHHhh-------------ccccccHH---HHHHHHHH-----------------HHHHHHHHHhhcCCCCCCCCCChh
Q psy9904 303 VATALQA-------------GFLPYCEP---VYRRCVSL-----------------IEQTLNQHMANSQNPEQFDAPDKD 349 (592)
Q Consensus 303 ia~~~g~-------------~f~py~~~---v~~~~~~~-----------------l~~~l~~~~~~~~~~~~~~~~d~~ 349 (592)
+|+..|. .-.||-.. ...+++.. +...++. . +..
T Consensus 513 lAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqe-------q---~~t--- 579 (975)
T COG5181 513 LAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQE-------Q---DTT--- 579 (975)
T ss_pred HHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh-------c---ccc---
Confidence 4443332 22233211 11111111 1111100 0 000
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh-hhhhhhHHHHHHhccC
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV-HPCISDFMPILGQNLN 428 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~-~~~l~~llp~l~~~l~ 428 (592)
....+-+++++..+++-...||+ +.++..++..|+++.+++|+.|..+.|.+++.++..- ..-+..+-..|++++.
T Consensus 580 -~~~il~~f~tv~vsl~~r~kp~l--~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg 656 (975)
T COG5181 580 -VGLILPCFSTVLVSLEFRGKPHL--SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG 656 (975)
T ss_pred -ccEEEecccceeeehhhccCcch--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC
Confidence 01234456666666776677888 7899999999999999999999999999987665311 1235556677899999
Q ss_pred CCChhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--Hhhhccc
Q psy9904 429 PDLISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--LCSSLRN 505 (592)
Q Consensus 429 ~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--~~~~L~~ 505 (592)
.++++|--..+.++-.|....+ ..++|-+.+++|.|.++|.+.+ +.|..|.+.-+|.|+...|+.+.+ |++.-..
T Consensus 657 e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh--~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe 734 (975)
T COG5181 657 EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKH--QKVVANTIALVGTICMNSPEYIGVREWMRICFE 734 (975)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhh--HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence 9999999888888877776666 6799999999999999999876 789999999999999999998776 7653222
Q ss_pred -----CCCchH-hHHHHHHHHHHHh-hCchhhhh
Q psy9904 506 -----IRDNEE-KDSAFRGMCAMIT-VNPGGVVQ 532 (592)
Q Consensus 506 -----~~d~~E-k~~a~~~l~~li~-~~p~~~~~ 532 (592)
+..+.| |++|-.+|+.+.+ .+|+.++.
T Consensus 735 Lvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~ 768 (975)
T COG5181 735 LVDSLKSWNKEIRRNATETFGCISRAIGPQDVLD 768 (975)
T ss_pred HHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHH
Confidence 123444 7889999998886 58987653
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=7.4e-18 Score=170.82 Aligned_cols=395 Identities=16% Similarity=0.227 Sum_probs=268.5
Q ss_pred ccchHHHHHHHHHHHHHhhhch----hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh--hhHhhHHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE----ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV--PHLNELVPFLI 144 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~----~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~--~~l~~lvp~l~ 144 (592)
.+|.-|.+|+.+++.+-.+-.+ .++|..+|-+...+.|+.-.++..+.+++|+|++.....+. .|++..+...+
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l 457 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL 457 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH
Confidence 5799999999999998876543 57889999998888898888999999999999999887776 48888888888
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcC------CCccchHHHHHHHHcccc-------CCcc---chhhhHHHHHHhcC
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQ------PHDSYLKPLMTEMLGCMN-------GMVP---HLNELVPFLITCLS 208 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~------~~~~~l~~ll~~Ll~~l~-------~~vq---~l~~l~p~l~~il~ 208 (592)
.+|.|. |++-...||+.-.+.+++.+. ...+|++.++..|++..+ .|+. +|..++-|..+-.
T Consensus 458 iGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V- 535 (858)
T COG5215 458 IGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV- 535 (858)
T ss_pred hhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-
Confidence 889885 888888999999999998763 245677778887776551 2333 2333333332222
Q ss_pred chhhHHHHHHHhhhhhhhhhhc--cCCcccchHHHHHhhhhHH-HHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhh
Q psy9904 209 DKKALVRAITCWTLSRYSHWVV--SQPHDSYLKPLMTEHKNLL-ILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285 (592)
Q Consensus 209 d~~~~vr~~a~~~L~~~a~~~~--~~~~~~y~~~~~~~~~~l~-~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~ 285 (592)
......+-..+..++...+. ++-. -.++.. ....+. ..+..+..+....++++. +--+.+|..+++.++.
T Consensus 536 --~~~~a~~~~~~~~kl~~~isv~~q~l--~~eD~~-~~~elqSN~~~vl~aiir~~~~~ie--~v~D~lm~Lf~r~les 608 (858)
T COG5215 536 --SDILAGFYDYTSKKLDECISVLGQIL--ATEDQL-LVEELQSNYIGVLEAIIRTRRRDIE--DVEDQLMELFIRILES 608 (858)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHH-HHHHHHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHhc
Confidence 11111111111111100000 0000 000000 000111 123344445556677765 6667799999988764
Q ss_pred cccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhh
Q psy9904 286 LKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL 365 (592)
Q Consensus 286 ~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~l 365 (592)
. +...-...++-+++.++.++|+.|..|++.+. +.+.+.+.. .|......+..+++.++.++
T Consensus 609 ~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fi----Pyl~~aln~-------------~d~~v~~~avglvgdlantl 670 (858)
T COG5215 609 T-KPTTAFGDVYTAISALSTSLEERFEQYASKFI----PYLTRALNC-------------TDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred c-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHhcc-------------hhHHHHHHHHHHHHHHHHHh
Confidence 3 11111146788999999999999999998764 444444421 14556678999999999999
Q ss_pred hhhhHhhhccCchHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhc--cCCCCh-----hHHH
Q psy9904 366 DMHIDSLVSNSNIMHLLYQCMQDP--MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQN--LNPDLI-----SVCN 436 (592)
Q Consensus 366 g~~~~~~~~~~~l~~~l~~~l~~~--~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~--l~~~~~-----~v~~ 436 (592)
|.+|.+|. ..+|..+.+|++++ ..+++-..++++||++-.+|..|.+|++.+|-.+.+. ++++.. +.+.
T Consensus 671 ~~df~~y~--d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~ 748 (858)
T COG5215 671 GTDFNIYA--DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRK 748 (858)
T ss_pred hhhHHHHH--HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHH
Confidence 99999998 78999999999875 3578889999999999999999999999999887654 444322 2333
Q ss_pred HH-------HHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 437 NA-------TWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 437 ~A-------~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
++ .-++|.-.+.-...+.||+..++..+-.+-.++.........+.+.||.++...|.
T Consensus 749 ~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 749 NAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC
Confidence 33 33444433322355789999888888777777665556667888999999887775
No 11
>KOG1824|consensus
Probab=99.80 E-value=4.4e-16 Score=166.04 Aligned_cols=492 Identities=12% Similarity=0.167 Sum_probs=313.2
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh-----hhHhhHHHHHHHhcc
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV-----PHLNELVPFLITCLS 148 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~-----~~l~~lvp~l~~~L~ 148 (592)
.|..-|.+||+-|+...+++-+..+..-+...+-+..-+.|.-+-++|-.+.-..++... ..++.+.|.+...+.
T Consensus 62 EVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~ 141 (1233)
T KOG1824|consen 62 EVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAIS 141 (1233)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhh
Confidence 377789999999999999887888888887776666677888887777765554443222 223444555444443
Q ss_pred CC--hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 149 DK--KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 149 D~--~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
-. ...++.-+|..++-+-..++. ...+|...++..++-. +..+...||.-||.+|+.++
T Consensus 142 ~qe~~sai~~e~lDil~d~lsr~g~-ll~~fh~~il~~l~~q------------------l~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 142 KQEDVSAIKCEVLDILADVLSRFGT-LLPNFHLSILKCLLPQ------------------LQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred hcccchhhHHHHHHHHHHHHHhhcc-cCcchHHHHHHHHhhc------------------ccChHHHHHHHHHHHHHHHH
Confidence 22 122444344333333322221 1222333333333222 23346678888898888877
Q ss_pred hhhccCCcccchHHHHHh------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHH
Q psy9904 227 HWVVSQPHDSYLKPLMTE------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLEC 299 (592)
Q Consensus 227 ~~~~~~~~~~y~~~~~~~------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~ 299 (592)
...+...+....+.++.. ....+..+.|+++++...|+.+. .+++.++|.+.+..+....++.++ ...+++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~--~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG--SHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh--cccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 655544333222223322 12346778899999999999998 799999999999886654444444 578899
Q ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHH--HHHHHh---------hcCCCC---CC-CCCChh--HHHHHHHHHHHHH
Q psy9904 300 LSSVATALQAGFLPYCEPVYRRCVSLIEQT--LNQHMA---------NSQNPE---QF-DAPDKD--FMIVALDLLSGLA 362 (592)
Q Consensus 300 l~~ia~~~g~~f~py~~~v~~~~~~~l~~~--l~~~~~---------~~~~~~---~~-~~~d~~--~~~~ald~l~~l~ 362 (592)
++.+......+..||.+.+..-|++.|..- +..... ..++.+ .+ |++|-. .|..|..|+.+++
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I 360 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI 360 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence 999999999999999998877776665421 100000 000000 01 111211 2444444443332
Q ss_pred h-----------hhhhh----------------hHhhhc---c-------------------------------------
Q psy9904 363 E-----------GLDMH----------------IDSLVS---N------------------------------------- 375 (592)
Q Consensus 363 ~-----------~lg~~----------------~~~~~~---~------------------------------------- 375 (592)
. .+|.. |.-|++ +
T Consensus 361 sSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai 440 (1233)
T KOG1824|consen 361 SSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAI 440 (1233)
T ss_pred hccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHH
Confidence 1 11100 000100 0
Q ss_pred ----------------------------------CchHHHHHHHhCCC--ChHHHHHHHHHHHHH-HHHchhhhhhhhhh
Q psy9904 376 ----------------------------------SNIMHLLYQCMQDP--MPEVRQSSFALLGDL-TKACFSHVHPCISD 418 (592)
Q Consensus 376 ----------------------------------~~l~~~l~~~l~~~--~~~vR~~a~~~l~~l-a~~~~~~~~~~l~~ 418 (592)
+.++|-+...++|. ....+..++..+... +.+-++.|.||++.
T Consensus 441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~ 520 (1233)
T KOG1824|consen 441 QKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSA 520 (1233)
T ss_pred HHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhh
Confidence 11222222233332 256778888766554 45556789999999
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-------chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 419 FMPILGQNLNPDLISVCNNATWAIGEISVKLG-------EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 419 llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-------~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
+.|.+..++.+++|++...|+-..++++.... -++.||+..++....+.|...+.+..|++.|+.|+|.+...
T Consensus 521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~ 600 (1233)
T KOG1824|consen 521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIAN 600 (1233)
T ss_pred hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764 35789999999999999998888899999999999999887
Q ss_pred CCCchHh----Hhhh-cccCCCchHhHHHHHHHHHHHhhCchh--hhhhHHHHHHHhhccCCC-----chhHHHHHHHHH
Q psy9904 492 CPHDVAP----LCSS-LRNIRDNEEKDSAFRGMCAMITVNPGG--VVQEFIFFCDAVASWSTP-----KEDLKEMFHKIL 559 (592)
Q Consensus 492 ~~~~~~p----~~~~-L~~~~d~~Ek~~a~~~l~~li~~~p~~--~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~ll 559 (592)
.++.+.. .+.. +.++++...|.+|+++++.++.. |-. +.+.+..+...+++|-.. ....-..+..++
T Consensus 601 fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S-~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~ 679 (1233)
T KOG1824|consen 601 FGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMS-PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLV 679 (1233)
T ss_pred HhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhc-cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764332 2222 22345566799999999977753 322 234455555556555321 223445688888
Q ss_pred HHHHhccChhhHHHHHhcCCHHHHHHHH
Q psy9904 560 HGFRTQVGDENWQRFADQFPDQLRDRLS 587 (592)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 587 (592)
+.|...+|.+..+.++.++|+-+.+-..
T Consensus 680 ~~~~~~~~~~~~e~vL~el~~Lisesdl 707 (1233)
T KOG1824|consen 680 KNYSDSIPAELLEAVLVELPPLISESDL 707 (1233)
T ss_pred HHHhccccHHHHHHHHHHhhhhhhHHHH
Confidence 9999889988899999999998766543
No 12
>KOG0212|consensus
Probab=99.71 E-value=1.6e-14 Score=147.14 Aligned_cols=371 Identities=15% Similarity=0.198 Sum_probs=263.5
Q ss_pred cchHHHHHHHHHHHHHhhhc---h-hhhHhHHH-HHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh
Q psy9904 72 DWNLRKCSAAALDVLANVFR---E-ELLPVLLP-ILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC 146 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~---~-~vl~~ll~-~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~ 146 (592)
-+.-||+|+.-|..+.+.+- + .-+..++. .+..+..+++...|++++.++.+++-+.+....+|+..++|.++.+
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c 92 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC 92 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh
Confidence 36689999999999998764 2 34556666 6678888999999999999999999888865566999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc---cCCcc---------------------chhhhHHH
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP---------------------HLNELVPF 202 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq---------------------~l~~l~p~ 202 (592)
+.|++.+||+-||.+|.+++....++ ...||+.++..+.+-. ...|+ ++++++|.
T Consensus 93 f~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipL 171 (675)
T KOG0212|consen 93 FSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPL 171 (675)
T ss_pred ccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHH
Confidence 99999999999999999999987653 5678888888777654 22333 13455555
Q ss_pred HHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHH
Q psy9904 203 LITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQK 282 (592)
Q Consensus 203 l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~ 282 (592)
+..-+.+.++..|.+.. +=+..+-..-+-++. .|++.+++.|++.
T Consensus 172 L~eriy~~n~~tR~flv---------------------------------~Wl~~Lds~P~~~m~--~yl~~~ldGLf~~ 216 (675)
T KOG0212|consen 172 LRERIYVINPMTRQFLV---------------------------------SWLYVLDSVPDLEMI--SYLPSLLDGLFNM 216 (675)
T ss_pred HHHHHhcCCchHHHHHH---------------------------------HHHHHHhcCCcHHHH--hcchHHHHHHHHH
Confidence 55444433444443321 111111111122344 6999999999985
Q ss_pred HhhcccCCccchHHHH-HHHHHHHHHhhc--cccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHH
Q psy9904 283 WNILKDEDKDLFPLLE-CLSSVATALQAG--FLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLS 359 (592)
Q Consensus 283 ~~~~~d~~~~~~~~~e-~l~~ia~~~g~~--f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~ 359 (592)
+ .|+.+++..+.+ |++.+-.....+ +..| +++++++...++ .++..++..|+..+.
T Consensus 217 L---sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~-----~~~i~vlv~~l~-------------ss~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 217 L---SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY-----DDMINVLVPHLQ-------------SSEPEIQLKALTWIQ 275 (675)
T ss_pred h---cCCcHHHHHHHHHHHHHHHHHHhcCccccCc-----ccchhhcccccc-------------CCcHHHHHHHHHHHH
Confidence 4 466666543433 466665555432 2222 223344433321 235667778899999
Q ss_pred HHHhhhhhhhHhhhccCchHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHchhhhhh---hhhhHHHHHHhccCCCChhHH
Q psy9904 360 GLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP-EVRQSSFALLGDLTKACFSHVHP---CISDFMPILGQNLNPDLISVC 435 (592)
Q Consensus 360 ~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~-~vR~~a~~~l~~la~~~~~~~~~---~l~~llp~l~~~l~~~~~~v~ 435 (592)
.++..-|..+.+|+ +.++..++.|+.+... .++..+...-+.+.+-+...... -+..++..+.+.+.++..+.|
T Consensus 276 efV~i~g~~~l~~~--s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tr 353 (675)
T KOG0212|consen 276 EFVKIPGRDLLLYL--SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETR 353 (675)
T ss_pred HHhcCCCcchhhhh--hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHH
Confidence 99999999999999 8899999999988766 68888887777776665443321 245789999999999999999
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC-chHhHhhhc
Q psy9904 436 NNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH-DVAPLCSSL 503 (592)
Q Consensus 436 ~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~-~~~p~~~~L 503 (592)
-.+..=+--+-.+.++.+..+..++++.|.+.|++++ ..|..-+...+..++..... ...+|+..|
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSSSNSPNLRKFLLSL 420 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 8888767777788888999999999999999998766 67777778888888765432 234444433
No 13
>KOG1824|consensus
Probab=99.70 E-value=9.6e-14 Score=148.51 Aligned_cols=254 Identities=14% Similarity=0.202 Sum_probs=150.0
Q ss_pred CCccccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc---------------
Q psy9904 67 DSSLSDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGC--------------- 128 (592)
Q Consensus 67 ~~~~~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~--------------- 128 (592)
||+...|.||++|+.|+..+...-.+ .+...+-|.+-..++..+..+|--.+.++-++....
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~ 419 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ 419 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc
Confidence 34567899999999999887754432 344555555556666666667666666655443221
Q ss_pred ---h---hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCcc--------
Q psy9904 129 ---M---NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP-------- 194 (592)
Q Consensus 129 ---~---~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq-------- 194 (592)
+ ..++...+.|+..+-+.+++.+.+-|..+..-|..+...+.+ ...++++.+++++...+|-+-.
T Consensus 420 ~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~-~l~~~~~slvpgI~~~l~DkSsss~~ki~~ 498 (1233)
T KOG1824|consen 420 GGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG-ALAQHIPSLVPGIIYSLNDKSSSSNLKIDA 498 (1233)
T ss_pred cCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc-hhhhcccccchhhhhhcCCccchHHHHHHH
Confidence 1 123334455566666666655545555555555555544433 4567788888888877732111
Q ss_pred ------------------chhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc------CCcccchHHHHHh------
Q psy9904 195 ------------------HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS------QPHDSYLKPLMTE------ 244 (592)
Q Consensus 195 ------------------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~------~~~~~y~~~~~~~------ 244 (592)
+++.+.|.+..-..|+-..+.+.|.-..+.|++.+.+ -...||+.++..-
T Consensus 499 L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 499 LVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred HHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHh
Confidence 1234444444444555555555555556667766642 2346777765531
Q ss_pred -----hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHH-hhccccccHHH
Q psy9904 245 -----HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATAL-QAGFLPYCEPV 318 (592)
Q Consensus 245 -----~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~-g~~f~py~~~v 318 (592)
.+....+++|+|.+....|..+. ..++.++|.|+++++ ++..+..+..|+..|+.+. .-...|-+..+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~i 652 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSPVLTEI 652 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhhhHHHH
Confidence 12234788999999888886665 678888999988764 2334567788888877642 22344555555
Q ss_pred HHHHHHHHH
Q psy9904 319 YRRCVSLIE 327 (592)
Q Consensus 319 ~~~~~~~l~ 327 (592)
++.+...++
T Consensus 653 l~~l~~flr 661 (1233)
T KOG1824|consen 653 LPELASFLR 661 (1233)
T ss_pred HHHHHHHHH
Confidence 544444443
No 14
>KOG1991|consensus
Probab=99.59 E-value=5.2e-12 Score=136.94 Aligned_cols=391 Identities=15% Similarity=0.242 Sum_probs=247.0
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc------C--CChhHHHHHHHHHHHHHhhchh-c-hhhhH-hhHHH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLF------H--HDWEIKESGILALGAIAEGCMN-G-MVPHL-NELVP 141 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~------s--~~~~~R~aa~~aLg~iaeg~~~-~-i~~~l-~~lvp 141 (592)
.+.+-||..++-.++..-|++.+|.+++++.+.++ . .+++.+++|+.++|++++...+ . ....+ .-+++
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 45677888999999999999999999999988776 2 3688999999999999987653 1 12223 34788
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHH-HhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHh
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSH-WVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCW 220 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~-~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~ 220 (592)
+++..+++|--..|+.|||.+++|++ .+. ....+...++...+|+ .+|.+..||..|+.
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~---d~~~l~~ale~t~~~l-----------------~~d~~lPV~VeAal 525 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFK---DPNNLSEALELTHNCL-----------------LNDNELPVRVEAAL 525 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCC---ChHHHHHHHHHHHHHh-----------------ccCCcCchhhHHHH
Confidence 89999999999999999999999994 222 2334555555555554 23556678888777
Q ss_pred hhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHH
Q psy9904 221 TLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECL 300 (592)
Q Consensus 221 ~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l 300 (592)
+|+.+.... ....+.+. ++++.+|..|+...+.. +...+..++
T Consensus 526 ALq~fI~~~------------------------------~~~~e~~~--~hvp~~mq~lL~L~ne~-----End~Lt~vm 568 (1010)
T KOG1991|consen 526 ALQSFISNQ------------------------------EQADEKVS--AHVPPIMQELLKLSNEV-----ENDDLTNVM 568 (1010)
T ss_pred HHHHHHhcc------------------------------hhhhhhHh--hhhhHHHHHHHHHHHhc-----chhHHHHHH
Confidence 777652110 00001122 56667777776654432 223577888
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHH-HHHHHHHHHHHhhhhhh--hHhhhccCc
Q psy9904 301 SSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFM-IVALDLLSGLAEGLDMH--IDSLVSNSN 377 (592)
Q Consensus 301 ~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~-~~ald~l~~l~~~lg~~--~~~~~~~~~ 377 (592)
..++..++++..||+..+.+.+.....++++.. +++...++|+... ...+.+++++...+..+ ....++ +.
T Consensus 569 e~iV~~fseElsPfA~eL~q~La~~F~k~l~~~-----~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le-~~ 642 (1010)
T KOG1991|consen 569 EKIVCKFSEELSPFAVELCQNLAETFLKVLQTS-----EDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE-PI 642 (1010)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHhcc-----CCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HH
Confidence 889999999999999988877777666666431 1112123344432 23455566666665533 223332 45
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHH------------------HchhhhhhhhhhHHHHHHhccC-----------
Q psy9904 378 IMHLLYQCMQDPMPEVRQSSFALLGDLTK------------------ACFSHVHPCISDFMPILGQNLN----------- 428 (592)
Q Consensus 378 l~~~l~~~l~~~~~~vR~~a~~~l~~la~------------------~~~~~~~~~l~~llp~l~~~l~----------- 428 (592)
+++.+...+++.-.++-+.++.++..+.- ........|++.++|.+-+-+.
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 66777677766555666666655554432 2222223455555555543321
Q ss_pred --------------CC--ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHH------------HH
Q psy9904 429 --------------PD--LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLL------------EN 480 (592)
Q Consensus 429 --------------~~--~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~------------~n 480 (592)
.+ ..+-+..|+..++.+..++++.+..|++.++...+..+.........+ -|
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyyn 802 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYN 802 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 11 122355799999999999988888899988888888777632222221 12
Q ss_pred HHHHHHHhhhh-CCCchHh-HhhhcccCCCchHhHHHHHHHHHHHhhC
Q psy9904 481 TAITIGRLGYV-CPHDVAP-LCSSLRNIRDNEEKDSAFRGMCAMITVN 526 (592)
Q Consensus 481 a~~~lgrl~~~-~~~~~~p-~~~~L~~~~d~~Ek~~a~~~l~~li~~~ 526 (592)
-..++|-+-.. ++..+.+ |.+.+......+.|.-.+-|||.++...
T Consensus 803 P~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~ 850 (1010)
T KOG1991|consen 803 PKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLG 850 (1010)
T ss_pred cHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 22334433221 2334444 7776655444667888999999999873
No 15
>KOG0166|consensus
Probab=99.57 E-value=1.2e-12 Score=135.64 Aligned_cols=391 Identities=19% Similarity=0.256 Sum_probs=262.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhh-HhhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPH-LNELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~-l~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
.+...+.+.|.+...+..+..++-.+...-. ..+..- -..++|.++.+|. +.+|.+|.-|.|||.++|....+. .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~--T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ--T 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh--c
Confidence 4444455667777777777777766554322 222221 2479999999996 777999999999999999754431 1
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHH
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAI 255 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai 255 (592)
+.+ + =..-+|.|..++.+++..|+..|.|+|++++..- | ..+++ +.
T Consensus 146 ~~v--------------v--~agavp~fi~Ll~s~~~~v~eQavWALgNIagds------~-------~~Rd~--vl--- 191 (514)
T KOG0166|consen 146 KVV--------------V--DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS------P-------DCRDY--VL--- 191 (514)
T ss_pred ccc--------------c--cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC------h-------HHHHH--HH---
Confidence 100 0 0456788888888889999999999999986311 0 11110 00
Q ss_pred HHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCc--cchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH
Q psy9904 256 GTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK--DLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQH 333 (592)
Q Consensus 256 ~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~--~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~ 333 (592)
-..+|++|+..+.. +++ .+..+..+|+.+++ |+.-.|-+. .+..+++.|...+..
T Consensus 192 ----------------~~g~l~pLl~~l~~---~~~~~~lRn~tW~LsNlcr--gk~P~P~~~-~v~~iLp~L~~ll~~- 248 (514)
T KOG0166|consen 192 ----------------SCGALDPLLRLLNK---SDKLSMLRNATWTLSNLCR--GKNPSPPFD-VVAPILPALLRLLHS- 248 (514)
T ss_pred ----------------hhcchHHHHHHhcc---ccchHHHHHHHHHHHHHHc--CCCCCCcHH-HHHHHHHHHHHHHhc-
Confidence 02335666655432 222 24678889999987 444444444 334556666665532
Q ss_pred HhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhh
Q psy9904 334 MANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH 413 (592)
Q Consensus 334 ~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~ 413 (592)
.|.+...-++.+++.+..+..+.+.-.+. ..+++.+..+|.+.+..++..|+.++|+++.+...+..
T Consensus 249 ------------~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~-~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq 315 (514)
T KOG0166|consen 249 ------------TDEEVLTDACWALSYLTDGSNEKIQMVID-AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ 315 (514)
T ss_pred ------------CCHHHHHHHHHHHHHHhcCChHHHHHHHH-ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH
Confidence 25677777888999998877776665553 67899999999999999999999999998876665544
Q ss_pred hhhh-hHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 414 PCIS-DFMPILGQNLNP-DLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 414 ~~l~-~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
-.+. ..+|.+...+.. ...+++..|||.++.|+....+.+...+. .++|.|+.++++.+ -.++.-|+|+|+.+..
T Consensus 316 ~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e--f~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE--FDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc--hHHHHHHHHHHHhhcc
Confidence 3333 577888888773 45569999999999998644455665554 79999999999876 6789999999999887
Q ss_pred hCC-Cc---------hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchhhh---hhHH---HHHHH---hhccC-CCchh
Q psy9904 491 VCP-HD---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVV---QEFI---FFCDA---VASWS-TPKED 550 (592)
Q Consensus 491 ~~~-~~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~---~~~~---~~~~~---i~~~~-~~~~~ 550 (592)
... +. +.|+|..| ...|...-..++.|+..|.+.....-. ..+. .-+.. |-..+ ..+++
T Consensus 394 ~g~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~ 472 (514)
T KOG0166|consen 394 SGTPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEE 472 (514)
T ss_pred cCCHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHH
Confidence 643 22 45588877 456665566788888888765433221 1122 22222 21111 24578
Q ss_pred HHHHHHHHHHHHHh
Q psy9904 551 LKEMFHKILHGFRT 564 (592)
Q Consensus 551 ~~~~~~~ll~~~~~ 564 (592)
+......||..|-.
T Consensus 473 Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 473 IYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988874
No 16
>KOG0213|consensus
Probab=99.56 E-value=1.5e-11 Score=128.82 Aligned_cols=470 Identities=17% Similarity=0.215 Sum_probs=269.9
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC-h
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK-K 151 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~-~ 151 (592)
+..|--.-..|..|+..+| +...+..+..-+.+.+..+|+....|++.++...+ ++.++|+|-....+. +
T Consensus 455 ~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavvasalg------ip~llpfLkavc~SkkS 525 (1172)
T KOG0213|consen 455 YYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVASALG------IPALLPFLKAVCGSKKS 525 (1172)
T ss_pred HHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC------cHHHHHHHHHHhccccc
Confidence 3445444466677777777 23333333334466788899999999998887665 467888888777776 7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhc-
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV- 230 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~- 230 (592)
|.-|.+...+..++|..++- ..-+|+.++++.+-+ .+.|.+..||..++.+++.+++..+
T Consensus 526 wqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~------------------gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 526 WQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEH------------------GLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred hhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHH------------------hhcccchhhhhHHHHHHHHHHHhcCC
Confidence 88888888888888887653 244556665555544 4577778888888888777766553
Q ss_pred --cCCcccchHHHHHh-----hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHH
Q psy9904 231 --SQPHDSYLKPLMTE-----HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSS 302 (592)
Q Consensus 231 --~~~~~~y~~~~~~~-----~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ 302 (592)
-+.|+.-+.|+... .+.+.+.+.|+|.++.-+..+... .|-..+|-.++.-+++- +.+. ..++..+..
T Consensus 587 ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~-yyTrevmlil~rEf~sP---DeemkkivLKVv~q 662 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS-YYTREVMLILIREFGSP---DEEMKKIVLKVVKQ 662 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH-HhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHH
Confidence 23444445554432 234445566666665544444331 22234555554434321 1111 223333333
Q ss_pred HHHHHhh-------cccc-ccHHHHHHHHHH-------HH-H--HHHHHHhhcC--C--CCCCCCCChhHHHHHHHHHHH
Q psy9904 303 VATALQA-------GFLP-YCEPVYRRCVSL-------IE-Q--TLNQHMANSQ--N--PEQFDAPDKDFMIVALDLLSG 360 (592)
Q Consensus 303 ia~~~g~-------~f~p-y~~~v~~~~~~~-------l~-~--~l~~~~~~~~--~--~~~~~~~d~~~~~~ald~l~~ 360 (592)
.|...|. +.+| |+.....+=+.. +. . .+-+.+.+.. + -...-++...+|....++++.
T Consensus 663 cc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~r 742 (1172)
T KOG0213|consen 663 CCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSR 742 (1172)
T ss_pred HhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 3333332 1111 000000000000 00 0 0000000000 0 000011224578888999999
Q ss_pred HHhhhhh-hhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHH
Q psy9904 361 LAEGLDM-HIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNAT 439 (592)
Q Consensus 361 l~~~lg~-~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~ 439 (592)
++..+|. +|..-++ ..++.-++..++....++. ..+..+|.++..++.-.+||++++...++..|+...+.||+.|+
T Consensus 743 i~~~lg~~diderle-E~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaa 820 (1172)
T KOG0213|consen 743 IVGRLGAADIDERLE-ERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAA 820 (1172)
T ss_pred HHhccccccccHHHH-HHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHH
Confidence 9988884 3543332 4567777777776554443 45677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc----hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-CchHh----Hhhhc-ccCCCc
Q psy9904 440 WAIGEISVKLGE----DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-HDVAP----LCSSL-RNIRDN 509 (592)
Q Consensus 440 ~~Lg~ia~~~~~----~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-~~~~p----~~~~L-~~~~d~ 509 (592)
-.+|.++..+.. .+-.|+.. .|.+-|..++ +++.-.+.++|.-|....+ ..+.| ++..| |-+++.
T Consensus 821 dlis~la~Vlktc~ee~~m~~lGv---vLyEylgeey--pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr 895 (1172)
T KOG0213|consen 821 DLISSLAKVLKTCGEEKLMGHLGV---VLYEYLGEEY--PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR 895 (1172)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhH---HHHHhcCccc--HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh
Confidence 999999877642 23334433 3455565544 6777766666666655443 11222 33333 334556
Q ss_pred hHhH--HHHHHHHHHHhhCchhhhh-hHHHHHH----HhhccCCCchhHHHHHHHHHHHHHhccChhh-HHHHHhcCCHH
Q psy9904 510 EEKD--SAFRGMCAMITVNPGGVVQ-EFIFFCD----AVASWSTPKEDLKEMFHKILHGFRTQVGDEN-WQRFADQFPDQ 581 (592)
Q Consensus 510 ~Ek~--~a~~~l~~li~~~p~~~~~-~~~~~~~----~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~l~~~ 581 (592)
+||. +.+.-++.+...+|.-+.. ....||- .+.+|+ .+.+....+-+.-+...+|+.. ...++..|.-+
T Consensus 896 heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk---K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq 972 (1172)
T KOG0213|consen 896 HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK---KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ 972 (1172)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH
Confidence 6764 3667777777788875532 3445543 333443 2344444554544555666433 55666666554
Q ss_pred HHH
Q psy9904 582 LRD 584 (592)
Q Consensus 582 ~~~ 584 (592)
.|+
T Consensus 973 eRq 975 (1172)
T KOG0213|consen 973 ERQ 975 (1172)
T ss_pred HHH
Confidence 443
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=6.3e-11 Score=140.67 Aligned_cols=406 Identities=16% Similarity=0.119 Sum_probs=244.0
Q ss_pred chHHHHHHHHHHHHHhhhch---hhh-HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHHhc
Q psy9904 73 WNLRKCSAAALDVLANVFRE---ELL-PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLITCL 147 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~---~vl-~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~~L 147 (592)
-.++..|..+|..|+..-+. .++ .-.+|.+.+.++++++..++.|+.+|..++.++.+....-+ ...+|.+++.|
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL 240 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 34677778889888875542 222 23677777788889999999999999999877665333222 45799999999
Q ss_pred cC-ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCch---------hhHHHHH
Q psy9904 148 SD-KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDK---------KALVRAI 217 (592)
Q Consensus 148 ~D-~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~---------~~~vr~~ 217 (592)
++ +++.||..|+|+|++++..-.+ +-..++. ..-+|.|..++..+ ..-++..
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~e-----~r~~Iv~-------------aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~ 302 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSKE-----AKQAIAD-------------AGGIPALINATVAPSKEFMQGEFAQALQEN 302 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCHH-----HHHHHHH-------------CCCHHHHHHHHhCcchhhhccccchHHHHH
Confidence 74 6679999999999999964221 1111110 11122222222211 2335678
Q ss_pred HHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHH---hcccCCChhhH--hhhhHHHHHHHhhcccCCcc
Q psy9904 218 TCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADS---VGHHLNKPEYI--SLLMPPLIQKWNILKDEDKD 292 (592)
Q Consensus 218 a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~---~g~~~~~~~y~--~~lmp~L~~~~~~~~d~~~~ 292 (592)
+.|+|++++... ....+++...++..+....+.++++.++.. .......-.-+ ..+.+.|.+.+.. .++.
T Consensus 303 AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~---k~p~ 377 (2102)
T PLN03200 303 AMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKP---RDTK 377 (2102)
T ss_pred HHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCC---CCCc
Confidence 999999987543 122333333332222223334444444332 11110000001 1234556554432 1122
Q ss_pred c--hHHHHHHHHHHHHHhhccccccHHHHHH--HHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh
Q psy9904 293 L--FPLLECLSSVATALQAGFLPYCEPVYRR--CVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH 368 (592)
Q Consensus 293 ~--~~~~e~l~~ia~~~g~~f~py~~~v~~~--~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~ 368 (592)
. ..+.++|..+. |.. ++...+.. ..+.|...+. ..+.+.+..++.+|..++.+-.+.
T Consensus 378 ~vqe~V~eALasl~---gN~---~l~~~L~~~daik~LV~LL~-------------~~~~evQ~~Av~aL~~L~~~~~e~ 438 (2102)
T PLN03200 378 LVQERIIEALASLY---GNA---YLSRKLNHAEAKKVLVGLIT-------------MATADVQEELIRALSSLCCGKGGL 438 (2102)
T ss_pred hhHHHHHHHHHHhc---CCh---HHHHHHHhccchhhhhhhhc-------------cCCHHHHHHHHHHHHHHhCCCHHH
Confidence 1 23445543311 111 01100000 0111222111 123567778888888887664333
Q ss_pred hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
..-.. ....++.++..|.+.+..+++.+..+++.++......-...+ ...+|.|++.|...+..++.+|+|+|+.++.
T Consensus 439 ~~aIi-~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~ 517 (2102)
T PLN03200 439 WEALG-GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC 517 (2102)
T ss_pred HHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 33332 245789999999999999999999999999875544332223 3588999999988899999999999999986
Q ss_pred hcCchhhhhHH--HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC-CCchHhHhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 448 KLGEDMRRYVP--MVINQLIIIINRPNTPKTLLENTAITIGRLGYVC-PHDVAPLCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 448 ~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~-~~~~~p~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
. ..+.+..+. ..++.|+++|++.+ ..++++++++|+.+.... ++.+.+++..|. -.+...+..+.++++.++.
T Consensus 518 ~-~~qir~iV~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl-sdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 518 H-SEDIRACVESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLL-GDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred C-cHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhc-CCChhHHHHHHHHHHHHHh
Confidence 3 344555553 58889999998765 688999999999997653 234555665543 2344456778888888876
Q ss_pred h
Q psy9904 525 V 525 (592)
Q Consensus 525 ~ 525 (592)
.
T Consensus 594 l 594 (2102)
T PLN03200 594 V 594 (2102)
T ss_pred h
Confidence 3
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=2.7e-11 Score=133.10 Aligned_cols=418 Identities=20% Similarity=0.252 Sum_probs=255.5
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKAL 153 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~ 153 (592)
.+|-.|.++|+.++ .+++.+.+++.+.+.+.|++|.+|+.|++++..+...+++.+... +++.+.+.|.|+++.
T Consensus 94 ~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~ 167 (526)
T PF01602_consen 94 YIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPS 167 (526)
T ss_dssp HHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHH
T ss_pred HHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcch
Confidence 46766666666655 678889999999999999999999999999999999888754332 788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCC
Q psy9904 154 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233 (592)
Q Consensus 154 VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~ 233 (592)
|+.+|+.++..+ +. .+......++.+...|. .++.+..+.++......+..|+.......
T Consensus 168 V~~~a~~~l~~i-~~-~~~~~~~~~~~~~~~L~------------------~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 168 VVSAALSLLSEI-KC-NDDSYKSLIPKLIRILC------------------QLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHHHHHHHHHHH-HC-THHHHTTHHHHHHHHHH------------------HHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred hHHHHHHHHHHH-cc-CcchhhhhHHHHHHHhh------------------hcccccchHHHHHHHHHHHhcccCChhhh
Confidence 999999999888 11 11000133444433333 23333455555555555555543211111
Q ss_pred c-ccchHHHHH--hhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhh
Q psy9904 234 H-DSYLKPLMT--EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQA 309 (592)
Q Consensus 234 ~-~~y~~~~~~--~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~ 309 (592)
. ..++..+.. +..+-...+.|+..+.... +. ++.+..++++|...+. +.++++ +.+++++..++.....
T Consensus 228 ~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~-~~---~~~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS-PS---PELLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SS---HHHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHHHhh-cc---hHHHHhhHHHHHHHhh---cccchhehhHHHHHHHhhcccch
Confidence 0 001111111 1222235566766665322 22 2467778888887654 344443 6788888887766422
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh-CC
Q psy9904 310 GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM-QD 388 (592)
Q Consensus 310 ~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l-~~ 388 (592)
.+. +. .....++.. .+|...+..+++++..++..-. + ..+++.+...+ +.
T Consensus 301 ~v~-~~--------~~~~~~l~~------------~~d~~Ir~~~l~lL~~l~~~~n--~------~~Il~eL~~~l~~~ 351 (526)
T PF01602_consen 301 AVF-NQ--------SLILFFLLY------------DDDPSIRKKALDLLYKLANESN--V------KEILDELLKYLSEL 351 (526)
T ss_dssp HHG-TH--------HHHHHHHHC------------SSSHHHHHHHHHHHHHH--HHH--H------HHHHHHHHHHHHHC
T ss_pred hhh-hh--------hhhhheecC------------CCChhHHHHHHHHHhhcccccc--h------hhHHHHHHHHHHhc
Confidence 221 11 111122210 2356788889999999876422 2 24566667777 34
Q ss_pred CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Q psy9904 389 PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468 (592)
Q Consensus 389 ~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l 468 (592)
.+.++|..++..++.++.........|++.++..+.. ....+...++..+..+....++. -..++..+...+
T Consensus 352 ~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l 423 (526)
T PF01602_consen 352 SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----SGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELL 423 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----TGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----ccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHH
Confidence 4788999999999999998877776666665555543 44556677777777777654332 234577777777
Q ss_pred cCCCCCchHHHHHHHHHHHhhhhCCC-chHh-Hhhhccc--CCCch-HhHHHHHHHHHHHhhCch-hhhhhHHHHHHHhh
Q psy9904 469 NRPNTPKTLLENTAITIGRLGYVCPH-DVAP-LCSSLRN--IRDNE-EKDSAFRGMCAMITVNPG-GVVQEFIFFCDAVA 542 (592)
Q Consensus 469 ~~~~~~~~v~~na~~~lgrl~~~~~~-~~~p-~~~~L~~--~~d~~-Ek~~a~~~l~~li~~~p~-~~~~~~~~~~~~i~ 542 (592)
.+.. ...++..++|.+|.-+...++ ...+ +++.+.. ..... -|..++.++.++...+|. ...+.+..++...+
T Consensus 424 ~~~~-~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~ 502 (526)
T PF01602_consen 424 EDIS-SPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLA 502 (526)
T ss_dssp TSSS-SHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHH
T ss_pred HHhh-HHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHh
Confidence 7632 367899999999999987765 1222 3333221 12222 377889999999988775 34455555555555
Q ss_pred ccCCCchhHHHHHHHHHHHH
Q psy9904 543 SWSTPKEDLKEMFHKILHGF 562 (592)
Q Consensus 543 ~~~~~~~~~~~~~~~ll~~~ 562 (592)
++...+.++++.....+.-+
T Consensus 503 ~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 503 TEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHS-SSHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHH
Confidence 55556778887665555433
No 19
>KOG0915|consensus
Probab=99.51 E-value=2.6e-12 Score=144.01 Aligned_cols=357 Identities=18% Similarity=0.225 Sum_probs=232.9
Q ss_pred ccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L 147 (592)
+-|+-|+.||-+++.+++..++ ..++.++|.|-.+=.||+..++.|-...-+++.......+..|+.+|+.-|+..|
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999885 4577888888888889999999999988899888777788899999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhh---hhh
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT---LSR 224 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~---L~~ 224 (592)
.+..||||.++|-||..+-..-......+.++ ++..-+.+.++|-+.-||..+..+ |++
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lp------------------elw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLP------------------ELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864311101122233 333334444555555566654433 333
Q ss_pred hhhhhcc-C------CcccchHHHH------Hh-hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCC
Q psy9904 225 YSHWVVS-Q------PHDSYLKPLM------TE-HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDED 290 (592)
Q Consensus 225 ~a~~~~~-~------~~~~y~~~~~------~~-~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~ 290 (592)
++--.++ + ....-+.|++ .. ..+.+..+.++-.++...|..+. ||++.++|.|+..+..+.+.-
T Consensus 1111 l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk--P~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1111 LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK--PHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc--chhhHHHHHHHHHccccchHH
Confidence 2211111 1 0111122221 11 12234556677778888999887 999999999998765432211
Q ss_pred ccchH-------HHHHHHHHHHHHhhcccc----------ccH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHH
Q psy9904 291 KDLFP-------LLECLSSVATALQAGFLP----------YCE-PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352 (592)
Q Consensus 291 ~~~~~-------~~e~l~~ia~~~g~~f~p----------y~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 352 (592)
-+ +- -.|++... ++.+..-.| |.+ .++..+++-+.+.+...+ .. ..++
T Consensus 1189 Ln-Yls~r~~~~e~ealDt~-R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV---------gl---~Tkv 1254 (1702)
T KOG0915|consen 1189 LN-YLSLRLINIETEALDTL-RASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV---------GL---GTKV 1254 (1702)
T ss_pred HH-HHHHhhhhhHHHHHHHH-HHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC---------CC---Ccch
Confidence 00 11 11222211 111222223 322 122222222222221111 01 1134
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-hhhhhhhhHHHHHHhccCCCC
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS-HVHPCISDFMPILGQNLNPDL 431 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~-~~~~~l~~llp~l~~~l~~~~ 431 (592)
.+...++.++..+|.++.||. ..++..++..++|+++.+|+.-....|-+++.-.+ ++..++..++-.++.-..+.+
T Consensus 1255 g~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~ 1332 (1702)
T KOG0915|consen 1255 GCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK 1332 (1702)
T ss_pred hHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc
Confidence 567788999999999999998 78999999999999999999999999999988765 788888887777766544433
Q ss_pred hhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy9904 432 ISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIII 467 (592)
Q Consensus 432 ~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~ 467 (592)
+.+|..+..|+.+..+-++.|...++|.+.=.
T Consensus 1333 ----siscatis~Ian~s~e~Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1333 ----SISCATISNIANYSQEMLKNYASAILPLIFLA 1364 (1702)
T ss_pred ----chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 44555555566666667777877777765543
No 20
>KOG0166|consensus
Probab=99.50 E-value=3.9e-13 Score=139.27 Aligned_cols=320 Identities=18% Similarity=0.280 Sum_probs=208.3
Q ss_pred HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 96 PVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 96 ~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
.-++|.+.+++. +.++..|..|.+||..||.|..+.-.-.. ...+|.++.+|.+|+..||+.|.||||+++..-...
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~- 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC- 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH-
Confidence 356776667765 56789999999999999999886433333 468999999999999999999999999998653221
Q ss_pred CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
..| ++++ ..+.|.+.-+.++........++|+|+++++.-.+.
T Consensus 187 -Rd~-------vl~~--------g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~--------------------- 229 (514)
T KOG0166|consen 187 -RDY-------VLSC--------GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS--------------------- 229 (514)
T ss_pred -HHH-------HHhh--------cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC---------------------
Confidence 001 0111 112222222222222123345788888876432100
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCE-PVYRRCVSLIEQTLN 331 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~-~v~~~~~~~l~~~l~ 331 (592)
+.+ .-+..++|.|...+. ..|.++ ..++.++++++....+...-... .++++++.+|...
T Consensus 230 ----------P~~---~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-- 291 (514)
T KOG0166|consen 230 ----------PPF---DVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-- 291 (514)
T ss_pred ----------CcH---HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--
Confidence 011 234556677665443 234443 56677788777543332111111 1233333333221
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchh
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFS 410 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~ 410 (592)
+..++..++.+++.|+.+.+....-.+. ...++.+..++. ++...+|+.|+.++++++....+
T Consensus 292 ---------------~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 292 ---------------SPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred ---------------CcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH
Confidence 2234467889999998887766655553 678899988888 55666999999999999998888
Q ss_pred hhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q psy9904 411 HVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP--MVINQLIIIINRPNTPKTLLENTAITIGR 487 (592)
Q Consensus 411 ~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na~~~lgr 487 (592)
++...++ .++|.|++.++..++++|..|+|+++.++.....+-..|+- .+++.+..+|.-.+ ..+...+..++..
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D--~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD--VKIILVALDGLEN 433 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC--hHHHHHHHHHHHH
Confidence 8877765 59999999999999999999999999988655544444543 57888888886555 3345555555555
Q ss_pred hh
Q psy9904 488 LG 489 (592)
Q Consensus 488 l~ 489 (592)
|-
T Consensus 434 il 435 (514)
T KOG0166|consen 434 IL 435 (514)
T ss_pred HH
Confidence 43
No 21
>KOG1242|consensus
Probab=99.49 E-value=9.9e-12 Score=129.62 Aligned_cols=359 Identities=19% Similarity=0.250 Sum_probs=251.6
Q ss_pred cchHHHHHHHHHHHHHhhhchhhh--HhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 72 DWNLRKCSAAALDVLANVFREELL--PVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl--~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
...-|+.++..+..+..+++-..+ ..++.-+...+++. ....|+++.+++-......+....||+..++|.++..+.
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG 226 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence 345566677777777777663221 23444555555664 456788999999999998888899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc--cCC--cc---------------chhhhHHHHHHhcCc
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM--NGM--VP---------------HLNELVPFLITCLSD 209 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l--~~~--vq---------------~l~~l~p~l~~il~d 209 (592)
|..+.||.+|..+.-.+...+.......++++++..+.... .|. ++ .+++++|-+...|.|
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D 306 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD 306 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc
Confidence 99999999999999999988877666777888888777663 121 11 358899999999988
Q ss_pred hhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccC
Q psy9904 210 KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDE 289 (592)
Q Consensus 210 ~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~ 289 (592)
.++.+|..+..++.+|. ..+ .+ +-+..++|.|++.+. |.
T Consensus 307 T~~evr~a~~~~l~~~~---------------------------------svi----dN-~dI~~~ip~Lld~l~---dp 345 (569)
T KOG1242|consen 307 TKPEVRKAGIETLLKFG---------------------------------SVI----DN-PDIQKIIPTLLDALA---DP 345 (569)
T ss_pred CCHHHHHHHHHHHHHHH---------------------------------Hhh----cc-HHHHHHHHHHHHHhc---Cc
Confidence 88888887555554432 111 11 447777888887543 33
Q ss_pred CccchHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhh--h
Q psy9904 290 DKDLFPLLECLSSVATALQAGFLPYCE-PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL--D 366 (592)
Q Consensus 290 ~~~~~~~~e~l~~ia~~~g~~f~py~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~l--g 366 (592)
... ..+|+-.+.. ..|..|.. +...-+++++.+-+.+. +......+...+..++.-+ .
T Consensus 346 ~~~---~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~eR-------------st~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 346 SCY---TPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLAER-------------STSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred ccc---hHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHhhc-------------cchhhhhHHHHHHHHHHhhcCH
Confidence 322 4566555443 35766664 44555566666665432 1222234555666666666 3
Q ss_pred hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHH-HHHHHHHHHH
Q psy9904 367 MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVC-NNATWAIGEI 445 (592)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~-~~A~~~Lg~i 445 (592)
....||+ +.++|-+...+.+..+++|..+...||.+.+..+..-. +...|.+.+.+.++...++ ..+...++++
T Consensus 407 ~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~ev 481 (569)
T KOG1242|consen 407 KDLAPFL--PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEV 481 (569)
T ss_pred HHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHH
Confidence 5578999 78999999999999999999999999999999887543 8889999998877755544 4677788887
Q ss_pred HHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 446 SVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 446 a~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
....+. .++..+++.++...........++++..|-++-+....+..+.|
T Consensus 482 l~~~~v---~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~ 531 (569)
T KOG1242|consen 482 LAGLGV---EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQP 531 (569)
T ss_pred Hhcccc---hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHH
Confidence 765553 36666777777666655555668888887777666555555555
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.46 E-value=1.4e-10 Score=137.66 Aligned_cols=408 Identities=14% Similarity=0.098 Sum_probs=259.1
Q ss_pred hHHHHHHHHHHHHHhhhch---hhh-HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh-HhhHHHHHHHhcc
Q psy9904 74 NLRKCSAAALDVLANVFRE---ELL-PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH-LNELVPFLITCLS 148 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~---~vl-~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~-l~~lvp~l~~~L~ 148 (592)
.+|..++.+|..++.+-.+ .+. .-.+|.|.+++.+++...|+.|+.+|+.++.+..+..... -...+|.|+++|+
T Consensus 419 evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~ 498 (2102)
T PLN03200 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE 498 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3888899999999865332 222 2356777777888889999999999999998766432222 2468999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhh
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 228 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~ 228 (592)
.+++.+|..|+|+|++++.+- +....++. . ...+|.|..+|++.+..++..++|+|.++...
T Consensus 499 s~~~~iqeeAawAL~NLa~~~------~qir~iV~---~---------aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 499 TGSQKAKEDSATVLWNLCCHS------EDIRACVE---S---------AGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhCCc------HHHHHHHH---H---------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998631 11111110 0 24456666667666666777777877765210
Q ss_pred hccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHh
Q psy9904 229 VVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQ 308 (592)
Q Consensus 229 ~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g 308 (592)
+.. . .++++...+.. ++......++++++.+.....
T Consensus 561 ----------------------------------~d~----~----~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 561 ----------------------------------ADA----A----TISQLTALLLG--DLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred ----------------------------------cch----h----HHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcc
Confidence 000 1 12333333321 222223456667766654322
Q ss_pred hccccccHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh
Q psy9904 309 AGFLPYCEPV--YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM 386 (592)
Q Consensus 309 ~~f~py~~~v--~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l 386 (592)
.... .... -...++.|...+. .++++.+..|+.+|+.++.+-.......+. ...++.++..+
T Consensus 597 ~~d~--~~~g~~~~ggL~~Lv~LL~-------------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LL 660 (2102)
T PLN03200 597 LEDL--VREGSAANDALRTLIQLLS-------------SSKEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLL 660 (2102)
T ss_pred hhHH--HHHhhhccccHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHH
Confidence 2100 0000 0122333333332 123455677889999998765544444442 56788888899
Q ss_pred CCCChHHHHHHHHHHHHHHHHchhhh-hhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Q psy9904 387 QDPMPEVRQSSFALLGDLTKACFSHV-HPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQL 464 (592)
Q Consensus 387 ~~~~~~vR~~a~~~l~~la~~~~~~~-~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L 464 (592)
+..+.++++.+...|+.++......- ..++. ..+|.|++.++..+..++..|+.+|+.++........-.-...++.|
T Consensus 661 ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~L 740 (2102)
T PLN03200 661 TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPL 740 (2102)
T ss_pred hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHH
Confidence 99999999999999999997544332 22343 48899999999999999999999999998755322111124678999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHhhhhCCC-c-----------hHhHhhhcccCCCchHh--HHHHHHHHHHHhhC----
Q psy9904 465 IIIINRPNTPKTLLENTAITIGRLGYVCPH-D-----------VAPLCSSLRNIRDNEEK--DSAFRGMCAMITVN---- 526 (592)
Q Consensus 465 ~~~l~~~~~~~~v~~na~~~lgrl~~~~~~-~-----------~~p~~~~L~~~~d~~Ek--~~a~~~l~~li~~~---- 526 (592)
+++|++.. ...|+||++++.+++...|. + +.|++..|... |.+.. ..|..++..+.+..
T Consensus 741 v~lLr~G~--~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~~~~~al~~l~~l~~~~~~~~ 817 (2102)
T PLN03200 741 TRVLREGT--LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSSATSEALEALALLARTKGGAN 817 (2102)
T ss_pred HHHHHhCC--hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-CcchhhHHHHHHHHHHHHhhcccCC
Confidence 99998765 78999999999999988762 2 22355555432 33323 34888888888741
Q ss_pred ----chhhh----hhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhc
Q psy9904 527 ----PGGVV----QEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQ 565 (592)
Q Consensus 527 ----p~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~ 565 (592)
|-.+. ..+..++..++ .-++.+++...++|..+-+.
T Consensus 818 ~~~~~~~~~~e~p~~l~~l~~~l~---~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 818 FSHPPWAVLAEVPSSLEPLVRCLA---EGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred CCCCchhhHHhccCchHHHHHHHH---cCChHHHHHHHHHHHHHhcc
Confidence 21111 22334444442 23456888888888877654
No 23
>KOG0915|consensus
Probab=99.44 E-value=6.7e-11 Score=132.90 Aligned_cols=376 Identities=16% Similarity=0.202 Sum_probs=239.9
Q ss_pred HHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHH
Q psy9904 79 SAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 79 aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~ 157 (592)
...-|-.||..+| ++.+-..+++.. .+..|..|++|.+.||+|++...+.++||+++++|.|...=-||++.||.+
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a 1017 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDA 1017 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHH
Confidence 3457888999888 455555555443 346899999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccc
Q psy9904 158 TCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 237 (592)
Q Consensus 158 a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y 237 (592)
...-=+.+...-. ....+|+..+++.|+..+ .+.+-.||..+|-+|..+.+
T Consensus 1018 M~sIW~~Li~D~k-~~vd~y~neIl~eLL~~l------------------t~kewRVReasclAL~dLl~---------- 1068 (1702)
T KOG0915|consen 1018 MTSIWNALITDSK-KVVDEYLNEILDELLVNL------------------TSKEWRVREASCLALADLLQ---------- 1068 (1702)
T ss_pred HHHHHHHhccChH-HHHHHHHHHHHHHHHHhc------------------cchhHHHHHHHHHHHHHHHc----------
Confidence 5433333322100 124568888888777766 33366789998888875421
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccH
Q psy9904 238 LKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCE 316 (592)
Q Consensus 238 ~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~ 316 (592)
.+.. + ++. +.++.+...++...+.+++.-++. ..+..+++.++...+..-.+--.
T Consensus 1069 -------g~~~----~-----------~~~--e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1069 -------GRPF----D-----------QVK--EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred -------CCCh----H-----------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 1100 0 000 234444555554433333322222 24556677776655543222111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCCh-----
Q psy9904 317 PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP----- 391 (592)
Q Consensus 317 ~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~----- 391 (592)
.+.+..+.++|-.. .+-..-++.|..++.++..++..-|..+.||+ +++.+.++.....-++
T Consensus 1125 ---~~~l~~iLPfLl~~--------gims~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1125 ---KEALDIILPFLLDE--------GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred ---HHHHHHHHHHHhcc--------CcccchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHH
Confidence 13345555555321 11122367888899999999999999999999 7888888776543211
Q ss_pred --------------HHHHHH------HHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC-ChhHHHHHHHHHHHHHHhcC
Q psy9904 392 --------------EVRQSS------FALLGDLTKACFSHVHPCISDFMPILGQNLNPD-LISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 392 --------------~vR~~a------~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~-~~~v~~~A~~~Lg~ia~~~~ 450 (592)
+.|.++ +.+++.|..+.... .+.+++|.+.+.++.. .-..|..+...+..++.++|
T Consensus 1192 ls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~---vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS---VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH---HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc
Confidence 223322 23444444443322 2456778887776544 34567777778888999999
Q ss_pred chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC-chHhHh-----hhcccCCCchHhHHHHHHHHHHHh
Q psy9904 451 EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH-DVAPLC-----SSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 451 ~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~-~~~p~~-----~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
.++.||...++..+++.+++.+ .+++...+.++|.+.....+ ....++ ..+- ++..++..+...+..+.+
T Consensus 1269 ~emtP~sgKll~al~~g~~dRN--esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~--k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1269 SEMTPYSGKLLRALFPGAKDRN--ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG--KDESLKSISCATISNIAN 1344 (1702)
T ss_pred cccCcchhHHHHHHhhcccccc--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHH
Confidence 9999999999999999998743 78888899999999877543 433322 2222 233345566666666444
Q ss_pred hCchhh
Q psy9904 525 VNPGGV 530 (592)
Q Consensus 525 ~~p~~~ 530 (592)
..+..+
T Consensus 1345 ~s~e~L 1350 (1702)
T KOG0915|consen 1345 YSQEML 1350 (1702)
T ss_pred hhHHHH
Confidence 444333
No 24
>KOG1242|consensus
Probab=99.43 E-value=9.7e-12 Score=129.69 Aligned_cols=313 Identities=15% Similarity=0.222 Sum_probs=212.7
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-.+|.+|..+...+...++.+-+..++|.+...+.+..|+.+.+++..||.+++..+..+...++.++|.+.+.|.|.+|
T Consensus 230 ~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 230 NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 35999999999999999987666666665544444459999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccC
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 232 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~ 232 (592)
.||.++-.||-++++.+.. +-+.++++.|+.++ .|+...+... ...|+ .+
T Consensus 310 evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l------------------~dp~~~~~e~-~~~L~-------~t 359 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDAL------------------ADPSCYTPEC-LDSLG-------AT 359 (569)
T ss_pred HHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHh------------------cCcccchHHH-HHhhc-------ce
Confidence 9999999999999998753 22455555555554 3333211110 00111 01
Q ss_pred CcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHH--hh
Q psy9904 233 PHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATAL--QA 309 (592)
Q Consensus 233 ~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~--g~ 309 (592)
.|. ..+ .+|-+..++|.|.+.++.. +.. ...+...++.++.-+ ..
T Consensus 360 tFV----------------------------~~V-~~psLalmvpiL~R~l~eR---st~~kr~t~~IidNm~~LveDp~ 407 (569)
T KOG1242|consen 360 TFV----------------------------AEV-DAPSLALMVPILKRGLAER---STSIKRKTAIIIDNMCKLVEDPK 407 (569)
T ss_pred eee----------------------------eee-cchhHHHHHHHHHHHHhhc---cchhhhhHHHHHHHHHHhhcCHH
Confidence 110 111 1255667778877755432 111 145666677777777 56
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCC
Q psy9904 310 GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDP 389 (592)
Q Consensus 310 ~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~ 389 (592)
...||++.+++. +...+. +++++.|..+...++.+.+.+|..-.+ ...|.+...+.+.
T Consensus 408 ~lapfl~~Llp~----lk~~~~-------------d~~PEvR~vaarAL~~l~e~~g~~~f~-----d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 408 DLAPFLPSLLPG----LKENLD-------------DAVPEVRAVAARALGALLERLGEVSFD-----DLIPELSETLTSE 465 (569)
T ss_pred HHhhhHHHHhhH----HHHHhc-------------CCChhHHHHHHHHHHHHHHHHHhhccc-----ccccHHHHhhccc
Confidence 788888876543 343321 235788899999999999999975322 4456666666543
Q ss_pred ChH-HHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC--ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy9904 390 MPE-VRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD--LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII 466 (592)
Q Consensus 390 ~~~-vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~--~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~ 466 (592)
..+ -|..+...++++...+ -..++..++|.++...... ++.++..-+|.++-+-...+..+++|+..+++.+.+
T Consensus 466 k~~~~~~g~aq~l~evl~~~---~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k 542 (569)
T KOG1242|consen 466 KSLVDRSGAAQDLSEVLAGL---GVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLK 542 (569)
T ss_pred hhhhhhHHHhhhHHHHHhcc---cchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHH
Confidence 332 2444444555554444 3456677777777765433 345778888888777666778899999999999999
Q ss_pred HHcCCC
Q psy9904 467 IINRPN 472 (592)
Q Consensus 467 ~l~~~~ 472 (592)
.+.+.+
T Consensus 543 ~~ad~d 548 (569)
T KOG1242|consen 543 GLADND 548 (569)
T ss_pred HhhhcC
Confidence 887543
No 25
>KOG0212|consensus
Probab=99.43 E-value=8.6e-11 Score=120.24 Aligned_cols=341 Identities=17% Similarity=0.154 Sum_probs=234.5
Q ss_pred cccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh
Q psy9904 70 LSDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC 146 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~ 146 (592)
+..-+.||++..++...+-++|. ..+..++|-+-.+++|++-++|+.|+.++-.|+..+...+..|++.++..+.+.
T Consensus 54 s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kl 133 (675)
T KOG0212|consen 54 SPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKL 133 (675)
T ss_pred CcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 34467899888999999888884 345667777778889999999999999999999999988889999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHHHHHccc---cCCcc--------------------chhhhHHH
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSY-LKPLMTEMLGCM---NGMVP--------------------HLNELVPF 202 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~-l~~ll~~Ll~~l---~~~vq--------------------~l~~l~p~ 202 (592)
..|++..||.+| ..|.|+...+.-+...+| ++.+++.|-..+ |+... +++++.+-
T Consensus 134 saDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 134 SADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred hcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 999999999865 567777777654332222 444444444433 33211 34778888
Q ss_pred HHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHH
Q psy9904 203 LITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQK 282 (592)
Q Consensus 203 l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~ 282 (592)
|...+.|+...||..+-.+++.+-+.+.+. +... . ++..++.++..
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~-------------------------------P~s~--d-~~~~i~vlv~~ 258 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSS-------------------------------PSSM--D-YDDMINVLVPH 258 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-------------------------------cccc--C-cccchhhcccc
Confidence 888888888888877665566553222111 1110 0 12233333332
Q ss_pred HhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHH---H
Q psy9904 283 WNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDL---L 358 (592)
Q Consensus 283 ~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~---l 358 (592)
. ..+++.+ ..++..+..+....|.++.||+..++..++ +++.. .+.+.....+... +
T Consensus 259 l---~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iL----pc~s~------------~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 259 L---QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAIL----PCLSD------------TEEMSIKEYAQMVNGLL 319 (675)
T ss_pred c---cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcc----cCCCC------------CccccHHHHHHHHHHHH
Confidence 1 1233333 456888999999999999999987754433 33311 1112222222211 2
Q ss_pred HHHH-hh-hhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHH
Q psy9904 359 SGLA-EG-LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCN 436 (592)
Q Consensus 359 ~~l~-~~-lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~ 436 (592)
..+. .. .|+++ .| ..+++.+.+.+.+...+.|.+++..+.-+-...+.++..+..++.+.+++.+.|.+..|..
T Consensus 320 ~~l~s~~~~~~~i-d~---~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 320 LKLVSSERLKEEI-DY---GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHhhhhhcccc-ch---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHH
Confidence 2221 11 12221 11 3688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCC
Q psy9904 437 NATWAIGEISVKLGEDMRRYVPMVINQLIIIINRP 471 (592)
Q Consensus 437 ~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~ 471 (592)
-+...+..+|..-.. +++..++..|.+++..+
T Consensus 396 ~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 396 LALSLLASICSSSNS---PNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhcCccc---ccHHHHHHHHHHHHhhh
Confidence 999999999864432 24455666666666653
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.32 E-value=7.4e-10 Score=114.26 Aligned_cols=488 Identities=14% Similarity=0.177 Sum_probs=272.0
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhh---HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELL---PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl---~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L 147 (592)
..|.-|+++.++...++.-+|-.++ .+++..+..++.|.+-.+|--+..+|+.++|.....=...++.++-.|++..
T Consensus 329 kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~ 408 (975)
T COG5181 329 KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGA 408 (975)
T ss_pred cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3799999999999999999996555 4567778899999999999999999999999877654467888888888888
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc-------C----------Ccc-----c-hhhhHHHHH
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN-------G----------MVP-----H-LNELVPFLI 204 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~-------~----------~vq-----~-l~~l~p~l~ 204 (592)
+..-..+-.+-+.|.|-+...+.+++...+-...|+.+++-++ | .|. . .+++.|-+.
T Consensus 409 ~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF 488 (975)
T COG5181 409 SQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFF 488 (975)
T ss_pred HhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhh
Confidence 7766666666667776655444443323333444444444331 0 000 0 122222211
Q ss_pred H---------------------------------------hcCchhhHHHHHHHhhhhhhhhhhccCCccc-----chHH
Q psy9904 205 T---------------------------------------CLSDKKALVRAITCWTLSRYSHWVVSQPHDS-----YLKP 240 (592)
Q Consensus 205 ~---------------------------------------il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~-----y~~~ 240 (592)
. -+.|+....|..++.+.++....+|--.++. |++.
T Consensus 489 ~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~ 568 (975)
T COG5181 489 SPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDS 568 (975)
T ss_pred chHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHH
Confidence 1 1111111112222222111111111000100 0000
Q ss_pred HHH----hhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhcccccc
Q psy9904 241 LMT----EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYC 315 (592)
Q Consensus 241 ~~~----~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~ 315 (592)
++. |.......+.|++++..+.+ +...||++.|+...+..++. ..++. ..+...+++++..+.. +..
T Consensus 569 il~Afqeq~~t~~~il~~f~tv~vsl~--~r~kp~l~~ivStiL~~L~~---k~p~vR~~aadl~~sl~~vlk~-c~e-- 640 (975)
T COG5181 569 ILNAFQEQDTTVGLILPCFSTVLVSLE--FRGKPHLSMIVSTILKLLRS---KPPDVRIRAADLMGSLAKVLKA-CGE-- 640 (975)
T ss_pred HHHHHHhccccccEEEecccceeeehh--hccCcchHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHh-cch--
Confidence 000 00000011223443333332 22237888888887776543 33343 3455555555554431 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCCCChHHH
Q psy9904 316 EPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQDPMPEVR 394 (592)
Q Consensus 316 ~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~~~~~vR 394 (592)
...+..+-.++-.+| ++++.+.....+.++.+|....+- .++|-+ ..++|.+.-.|++....|.
T Consensus 641 ~~~l~klg~iLyE~l-------------ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi--~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 641 TKELAKLGNILYENL-------------GEDYPEVLGSILKAICSIYSVHRFRSMQPPI--SGILPSLTPILRNKHQKVV 705 (975)
T ss_pred HHHHHHHhHHHHHhc-------------CcccHHHHHHHHHHHHHHhhhhcccccCCch--hhccccccHhhhhhhHHHh
Confidence 011111212223332 234567777788888888887773 355544 5788888888888888999
Q ss_pred HHHHHHHHHHHHHchhhhhhhhhhHHHHH---HhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCC
Q psy9904 395 QSSFALLGDLTKACFSHVHPCISDFMPIL---GQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRP 471 (592)
Q Consensus 395 ~~a~~~l~~la~~~~~~~~~~l~~llp~l---~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~ 471 (592)
.+.++++|.++...++.+. ...+|.+. +..|..-+.++|.||...+|-|++..|.. .++..|++-|+.+
T Consensus 706 ~nti~lvg~I~~~~peyi~--~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvq 777 (975)
T COG5181 706 ANTIALVGTICMNSPEYIG--VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQ 777 (975)
T ss_pred hhHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHH
Confidence 9999999999988776432 23455443 44455667889999999999999888753 4566666666544
Q ss_pred CCCchHHHHHHHHHHHhhhhCCC-chHh----------------------------------Hhh-hcccCC------Cc
Q psy9904 472 NTPKTLLENTAITIGRLGYVCPH-DVAP----------------------------------LCS-SLRNIR------DN 509 (592)
Q Consensus 472 ~~~~~v~~na~~~lgrl~~~~~~-~~~p----------------------------------~~~-~L~~~~------d~ 509 (592)
+ +..+-..+.+||-.+.+|+- .+.| |+. .+|.+. |.
T Consensus 778 e--Rq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~ 855 (975)
T COG5181 778 E--RQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDP 855 (975)
T ss_pred H--HHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccch
Confidence 3 34444445556666655532 1222 111 112222 22
Q ss_pred hHhHHHHHHHHHHHhhCchh-hhhhHHHHHHHh-hccCCCchhHHHHHHHHHHHHHhccChhhHHHHHh-c-CC--HHHH
Q psy9904 510 EEKDSAFRGMCAMITVNPGG-VVQEFIFFCDAV-ASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFAD-Q-FP--DQLR 583 (592)
Q Consensus 510 ~Ek~~a~~~l~~li~~~p~~-~~~~~~~~~~~i-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~-l~--~~~~ 583 (592)
.-|.+|...+-.++..+|.. ....+++++..+ .+...+++-+.+.|..=+.+|++.+|.+.+-.++. . |- -.+|
T Consensus 856 vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VR 935 (975)
T COG5181 856 VHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVR 935 (975)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHH
Confidence 22445555555554443322 223345555533 23345667778888888888998888766665543 2 22 2355
Q ss_pred HHHHHhhC
Q psy9904 584 DRLSAMYG 591 (592)
Q Consensus 584 ~~l~~~~~ 591 (592)
++.-..|+
T Consensus 936 k~ywtvyn 943 (975)
T COG5181 936 KRYWTVYN 943 (975)
T ss_pred HHHHHHHh
Confidence 55555554
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.30 E-value=1.7e-08 Score=111.02 Aligned_cols=440 Identities=18% Similarity=0.179 Sum_probs=246.0
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+...||-+..++..+...-++ .+.-+.+.+.+-++|+++.+|-.|+.+++.+.. ....+.++|.+.+.|.|++
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~ 127 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPS 127 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCc
Confidence 466888888888877766554 455577777778899999999999999999872 2356789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~ 231 (592)
|.||..|+-|+.++....++.. .. . ++|.+..++.|.++.|+..|+..+... +.-..
T Consensus 128 ~~VRk~A~~~l~~i~~~~p~~~-~~--------------------~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 128 PYVRKKAALALLKIYRKDPDLV-ED--------------------E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCH-HG--------------------G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred hHHHHHHHHHHHHHhccCHHHH-HH--------------------H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence 9999999999999988744311 11 1 345555566666777776666666544 10000
Q ss_pred CCcccchHHHHHhhhhHH------HHHHHHHHHHHHhcccCCChhhH--hhhhHHHHHHHhhcccCCccchHHHHHHHHH
Q psy9904 232 QPHDSYLKPLMTEHKNLL------ILYDAIGTLADSVGHHLNKPEYI--SLLMPPLIQKWNILKDEDKDLFPLLECLSSV 303 (592)
Q Consensus 232 ~~~~~y~~~~~~~~~~l~------~~~dai~~la~~~g~~~~~~~y~--~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~i 303 (592)
.....+........++. .....+..+.. .... .+... ..+++.+...++. .....+++|+..+
T Consensus 185 -~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~-~~~~--~~~~~~~~~~i~~l~~~l~s-----~~~~V~~e~~~~i 255 (526)
T PF01602_consen 185 -SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRR-YAPM--EPEDADKNRIIEPLLNLLQS-----SSPSVVYEAIRLI 255 (526)
T ss_dssp -HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTT-STSS--SHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHh-cccC--ChhhhhHHHHHHHHHHHhhc-----cccHHHHHHHHHH
Confidence 00011111111111000 00111111111 0011 01122 2345555444331 1112356666665
Q ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHH
Q psy9904 304 ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLY 383 (592)
Q Consensus 304 a~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~ 383 (592)
.. +.|. +.++..+++.+...+. .++...+-.+++.+..++......+. -.....
T Consensus 256 ~~-----l~~~-~~~~~~~~~~L~~lL~-------------s~~~nvr~~~L~~L~~l~~~~~~~v~-------~~~~~~ 309 (526)
T PF01602_consen 256 IK-----LSPS-PELLQKAINPLIKLLS-------------SSDPNVRYIALDSLSQLAQSNPPAVF-------NQSLIL 309 (526)
T ss_dssp HH-----HSSS-HHHHHHHHHHHHHHHT-------------SSSHHHHHHHHHHHHHHCCHCHHHHG-------THHHHH
T ss_pred HH-----hhcc-hHHHHhhHHHHHHHhh-------------cccchhehhHHHHHHHhhcccchhhh-------hhhhhh
Confidence 53 2222 2244455566665552 13566778889999888776532221 122333
Q ss_pred HHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc-CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHH
Q psy9904 384 QCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL-NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVI 461 (592)
Q Consensus 384 ~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l-~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il 461 (592)
.++. +++..+|..++.++..++.. . -+..+++.+.+.+ +..+.+++..++.+++.++........ ..+
T Consensus 310 ~~l~~~~d~~Ir~~~l~lL~~l~~~--~----n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~----~~v 379 (526)
T PF01602_consen 310 FFLLYDDDPSIRKKALDLLYKLANE--S----NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAE----WYV 379 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH--H--H----HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHH----HHH
T ss_pred heecCCCChhHHHHHHHHHhhcccc--c----chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHH----HHH
Confidence 4444 78899999999999999863 2 2344666666666 334677999999999999987755444 445
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh----HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHH
Q psy9904 462 NQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP----LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFF 537 (592)
Q Consensus 462 ~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p----~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~ 537 (592)
..+++++.... ..+...++..+.++...+|+.-.. .+..+..+.+.+=+..+...+|.-....+. .. ....+
T Consensus 380 ~~l~~ll~~~~--~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~ 455 (526)
T PF01602_consen 380 DTLLKLLEISG--DYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDI 455 (526)
T ss_dssp HHHHHHHHCTG--GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHH
T ss_pred HHHHHhhhhcc--ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHH
Confidence 55666666533 456677778888888777764222 455555544443344555555554443222 00 22333
Q ss_pred HHHhh-ccCCCchhHHHHHHHHHHHHHhccChh----h----HHHHHh--cCCHHHHHHHHHhh
Q psy9904 538 CDAVA-SWSTPKEDLKEMFHKILHGFRTQVGDE----N----WQRFAD--QFPDQLRDRLSAMY 590 (592)
Q Consensus 538 ~~~i~-~~~~~~~~~~~~~~~ll~~~~~~~~~~----~----~~~~~~--~l~~~~~~~l~~~~ 590 (592)
+..+. +|...+.+++..+...+..+....+.. . ..++.. +..+++|+|-...+
T Consensus 456 ~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~ 519 (526)
T PF01602_consen 456 LRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYL 519 (526)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 33332 244444555655444444443333311 1 223334 67888888865543
No 28
>KOG0211|consensus
Probab=99.30 E-value=4.8e-09 Score=115.31 Aligned_cols=383 Identities=17% Similarity=0.166 Sum_probs=249.0
Q ss_pred hHHHHHHHHHHHHHhhhch-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 74 NLRKCSAAALDVLANVFRE-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
.+|++++.-++.+|..++. .+...++|.+.+...|.+-.||++|+-++..+........ +....+.+.+++..+|+++
T Consensus 252 ~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~ 330 (759)
T KOG0211|consen 252 MVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSW 330 (759)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhH
Confidence 4999999999999999985 5677888888899999999999999999999998766433 6677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc--c------CCcc--------------chhhhHHHHHHhcCch
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM--N------GMVP--------------HLNELVPFLITCLSDK 210 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l--~------~~vq--------------~l~~l~p~l~~il~d~ 210 (592)
+||+.+......+++.++++.....+.+....+++.- + ++++ ....++|++..++.|.
T Consensus 331 ~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~ 410 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN 410 (759)
T ss_pred HHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc
Confidence 9999988888888887776432222222222233222 1 1222 1256779999988888
Q ss_pred hhHHHHHHHhhhhhhhhhhccCCcccchHHHHH-hhh-----hHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHh
Q psy9904 211 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT-EHK-----NLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284 (592)
Q Consensus 211 ~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~-~~~-----~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~ 284 (592)
...||...+......+...+.+...+++.|... ..+ .+..+++-+. ..+.+-.......+.+.++|.+...-.
T Consensus 411 ~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls-~~~~v~~v~g~~~~s~slLp~i~el~~ 489 (759)
T KOG0211|consen 411 ALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLS-LLEEVNDVIGISTVSNSLLPAIVELAE 489 (759)
T ss_pred cchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHH-HHHhccCcccchhhhhhhhhhhhhhcc
Confidence 888888755444443333343333444444432 111 1122232222 122222211111345666666664311
Q ss_pred hcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy9904 285 ILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAE 363 (592)
Q Consensus 285 ~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~ 363 (592)
+.... +..+++.+-.++...|..| +.+.+ -.++..++.+. ..+++..+...+..++.
T Consensus 490 ---d~~wRvr~ail~~ip~la~q~~~~~---~~~~~---~~l~~~~l~d~-------------v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 490 ---DLLWRVRLAILEYIPQLALQLGVEF---FDEKL---AELLRTWLPDH-------------VYSIREAAARNLPALVE 547 (759)
T ss_pred ---chhHHHHHHHHHHHHHHHHhhhhHH---hhHHH---HHHHHhhhhhh-------------HHHHHHHHHHHhHHHHH
Confidence 11111 2355666666677666443 33322 23444444332 24567888899999999
Q ss_pred hhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHH
Q psy9904 364 GLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIG 443 (592)
Q Consensus 364 ~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg 443 (592)
..|..+.- ..+.+.++....+++.-+|.+.+..+..++..+|..+ +...++|.+.....|..+.||.|++..|-
T Consensus 548 ~~G~~w~~----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 548 TFGSEWAR----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred HhCcchhH----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 99955432 2345555555555578999999999999999999987 47899999999999999999999999999
Q ss_pred HHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 444 EISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 444 ~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.+...+.... .=..+.|.+..+.+.++ .+++--|..+.|-+..
T Consensus 622 ~i~~~L~~~~--~~~~v~pll~~L~~d~~--~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 622 KILKLLDESV--RDEEVLPLLETLSSDQE--LDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHhhcchHH--HHHHHHHHHHHhccCcc--cchhHHHHHHHHHHHH
Confidence 8876664321 11234444444444444 6677777777776654
No 29
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.23 E-value=5.1e-11 Score=114.89 Aligned_cols=274 Identities=18% Similarity=0.247 Sum_probs=166.5
Q ss_pred HHHHHHHhh-cCCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCC--
Q psy9904 98 LLPILKETL-FHHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-- 173 (592)
Q Consensus 98 ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~-- 173 (592)
+.|.+.+++ .++.-....-|.+||..|+.|......-.+ ...+|.++++|.+++..||..+.||||+++..-....
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 344444444 445555667889999999999875422122 4689999999999999999999999999985432210
Q ss_pred --CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHH
Q psy9904 174 --HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLIL 251 (592)
Q Consensus 174 --~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~ 251 (592)
....+.|++..+...- .+.-+-..++|+|+++++.-.+++ ..
T Consensus 195 vL~~galeplL~ll~ss~--------------------~~ismlRn~TWtLSNlcRGknP~P----------~w------ 238 (526)
T COG5064 195 VLQCGALEPLLGLLLSSA--------------------IHISMLRNATWTLSNLCRGKNPPP----------DW------ 238 (526)
T ss_pred HHhcCchHHHHHHHHhcc--------------------chHHHHHHhHHHHHHhhCCCCCCC----------ch------
Confidence 1122344443333210 011223457899998865332221 11
Q ss_pred HHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHH
Q psy9904 252 YDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCE-PVYRRCVSLIEQT 329 (592)
Q Consensus 252 ~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~-~v~~~~~~~l~~~ 329 (592)
.-+...+|.|.+.+.. .++++ ..++.+++++...-.+...-.+. .+.+|++.++.+
T Consensus 239 ------------------~~isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~- 296 (526)
T COG5064 239 ------------------SNISQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH- 296 (526)
T ss_pred ------------------HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-
Confidence 1123334555444332 12332 44566666665432222111111 112233332221
Q ss_pred HHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 330 LNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 330 l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
++..+...++..++.|+.+...+..-.+ ....++.+...|+++...+|+.++.+++++....-
T Consensus 297 ----------------~sa~iqtPalR~vGNIVTG~D~QTqviI-~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt 359 (526)
T COG5064 297 ----------------ESAKIQTPALRSVGNIVTGSDDQTQVII-NCGALKAFRSLLSSPKENIRKEACWTISNITAGNT 359 (526)
T ss_pred ----------------ccccccCHHHHhhcCeeecCccceehhe-ecccHHHHHHHhcChhhhhhhhhheeecccccCCH
Confidence 1233344577778888766554433222 24566777777888888999999999999998877
Q ss_pred hhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 410 SHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 410 ~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
++++..++ +++|.|++.+...++.++..|||++....
T Consensus 360 eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 360 EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77776665 58999999999889999999999998764
No 30
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.21 E-value=6.1e-10 Score=107.55 Aligned_cols=351 Identities=17% Similarity=0.262 Sum_probs=224.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhh-chhchhhhH-hhHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEG-CMNGMVPHL-NELVPFLITCL-SDKKALVRAITCWTLSRYSHWVVSQPH 174 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg-~~~~i~~~l-~~lvp~l~~~L-~D~~~~VR~~a~~aL~~l~~~~~~~~~ 174 (592)
-+|.+.+-+.|.+-.....|..-+-.+... ..+.|.+.+ ..++|.+++.| ..+.-..+--|.|+|.++++....+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q-- 149 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ-- 149 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc--
Confidence 346666777777777777777777665432 223455544 35889999999 4455567778999999998754331
Q ss_pred ccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHH
Q psy9904 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDA 254 (592)
Q Consensus 175 ~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~da 254 (592)
. +|-.=..-+|.+.++|.+.+..||..+.|+|++.|... +.. +
T Consensus 150 T----------------kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~-----------R-------- 192 (526)
T COG5064 150 T----------------KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGC-----------R-------- 192 (526)
T ss_pred e----------------EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhH-----------H--------
Confidence 1 11001356788889998889999999999999985211 000 0
Q ss_pred HHHHHHHhcccCCChhhH--hhhhHHHHHHHhhcccCCcc---chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy9904 255 IGTLADSVGHHLNKPEYI--SLLMPPLIQKWNILKDEDKD---LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQT 329 (592)
Q Consensus 255 i~~la~~~g~~~~~~~y~--~~lmp~L~~~~~~~~d~~~~---~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~ 329 (592)
.|+ -..|.+++..+.+ +..+ +..+...|+.+++ |+.-.|- ...+...++++.+.
T Consensus 193 ---------------D~vL~~galeplL~ll~s---s~~~ismlRn~TWtLSNlcR--GknP~P~-w~~isqalpiL~KL 251 (526)
T COG5064 193 ---------------DYVLQCGALEPLLGLLLS---SAIHISMLRNATWTLSNLCR--GKNPPPD-WSNISQALPILAKL 251 (526)
T ss_pred ---------------HHHHhcCchHHHHHHHHh---ccchHHHHHHhHHHHHHhhC--CCCCCCc-hHHHHHHHHHHHHH
Confidence 111 1224444444332 2222 2345566777765 6665554 33455666777665
Q ss_pred HHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 330 LNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 330 l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
+.. .|.+...-|+-+++.+..+-.+.+.-.+. ..+++-+++.|.+++..+..-++..+|++.....
T Consensus 252 iys-------------~D~evlvDA~WAiSYlsDg~~E~i~avld-~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 252 IYS-------------RDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred Hhh-------------cCHHHHHHHHHHHHHhccCcHHHHHHHHh-cCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 532 24677778889999998876666666553 5678889999999999998889999999876543
Q ss_pred hhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q psy9904 410 SHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGR 487 (592)
Q Consensus 410 ~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgr 487 (592)
.+-.-.+. .+++.+...|+.....+|..|||.+..|.....+.++..++ .++|.|+.+|..-+ ..++..|||++..
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae--~k~kKEACWAisN 395 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE--YKIKKEACWAISN 395 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 32221111 23444444455566689999999999886433344554444 68899999987644 6788899999998
Q ss_pred hhhhC---CCc---------hHhHhhhcccCCCchHhHHHHHHHHHHHhh
Q psy9904 488 LGYVC---PHD---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 488 l~~~~---~~~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
....+ |+. +.|+|..|. +.|+.--..++.++-++++.
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VVDNKIIEVALDAIENILKV 444 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHh-ccCccchhhhHHHHHHHHhh
Confidence 76543 432 345666653 44453344556666555543
No 31
>PRK09687 putative lyase; Provisional
Probab=99.21 E-value=1.2e-09 Score=108.51 Aligned_cols=103 Identities=21% Similarity=0.120 Sum_probs=71.3
Q ss_pred HHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHH
Q psy9904 85 VLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164 (592)
Q Consensus 85 ~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~ 164 (592)
.+.+.|.....+.+++ .+.|++..+|.+|+.+|+.+.. +.+++.+..+++|+++.||..++|+||+
T Consensus 15 ~~~~~~~~~~~~~L~~----~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~ 80 (280)
T PRK09687 15 SLYSQCKKLNDDELFR----LLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQ 80 (280)
T ss_pred HHHHHHhhccHHHHHH----HHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4455555444444444 4489999999999999998753 4677888888999999999999999999
Q ss_pred HHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHh-cCchhhHHHHHHHhhhhhh
Q psy9904 165 YSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITC-LSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 165 l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~i-l~d~~~~vr~~a~~~L~~~ 225 (592)
+...- . . . .+.+|.|..+ ++|++..||..++.+|+.+
T Consensus 81 lg~~~----~-~-~------------------~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~ 118 (280)
T PRK09687 81 LGMAK----R-C-Q------------------DNVFNILNNLALEDKSACVRASAINATGHR 118 (280)
T ss_pred cCCCc----c-c-h------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 75310 0 0 0 2233444443 5677888888877777653
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.18 E-value=2e-10 Score=94.18 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 74 NLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
|.||++..+|..++..+|. ..++.++|.+..++.|++|++|++|+.+|..++..+.+.+.+|++++++.+.+.+.|+
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4699999999999999995 5688999999999999999999999999999999999888999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy9904 151 KALVRAITCWTLSRY 165 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l 165 (592)
++.||++| +.|.++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999987 455544
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.17 E-value=3.1e-07 Score=102.30 Aligned_cols=401 Identities=12% Similarity=0.112 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKAL 153 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~ 153 (592)
-+|-.|.++|+. ...+.+++.+++.+.+.+.|+++.||++|++++..+-...++.+. -..+++.+.++|.|+++.
T Consensus 120 ~IRaLALRtLs~---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 120 VVRALAVRTMMC---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHHc---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHHHHhcCCCcc
Confidence 366444444433 333567777777778888888888888888888887766554321 123556666677788888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCC
Q psy9904 154 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233 (592)
Q Consensus 154 VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~ 233 (592)
|...|+.+|..+.+..+. .-....+.+..|+..++.. ..-.+......|..| .+.+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~--~l~l~~~~~~~Ll~~L~e~------------------~EW~Qi~IL~lL~~y---~P~~~ 251 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSE--KIESSNEWVNRLVYHLPEC------------------NEWGQLYILELLAAQ---RPSDK 251 (746)
T ss_pred HHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHHhhcC------------------ChHHHHHHHHHHHhc---CCCCc
Confidence 888888777777654221 1112223333333332100 000111111111111 00000
Q ss_pred -----cccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhh----hhHHHHHHHhhcccCCccc-hHHHHHHHHH
Q psy9904 234 -----HDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISL----LMPPLIQKWNILKDEDKDL-FPLLECLSSV 303 (592)
Q Consensus 234 -----~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~----lmp~L~~~~~~~~d~~~~~-~~~~e~l~~i 303 (592)
....+.|.+ +..|-..++.|+..+..-.. .. .+..++. +-++|+.. ...+++. +.++..+..+
T Consensus 252 ~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~-~~-~~~~~~~~~~rl~~pLv~L----~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 252 ESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLAS-RC-SQELIERCTVRVNTALLTL----SRRDAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcC-cC-CHHHHHHHHHHHHHHHHHh----hCCCccHHHHHHHHHHHH
Confidence 001111211 12333344555554443221 11 1122222 33444432 2234454 5677777776
Q ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHH
Q psy9904 304 ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLY 383 (592)
Q Consensus 304 a~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~ 383 (592)
+.....-|.+++. .+... .++ + ..++...+++|..++..- ++ ..++.-+.
T Consensus 325 ~~~~P~lf~~~~~--------~Ff~~-------~~D------p-~yIK~~KLeIL~~Lane~--Nv------~~IL~EL~ 374 (746)
T PTZ00429 325 LVIFPNLLRTNLD--------SFYVR-------YSD------P-PFVKLEKLRLLLKLVTPS--VA------PEILKELA 374 (746)
T ss_pred HHHCHHHHHHHHH--------hhhcc-------cCC------c-HHHHHHHHHHHHHHcCcc--cH------HHHHHHHH
Confidence 6654333333221 11110 011 1 224556777777775432 22 23455666
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHH
Q psy9904 384 QCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQ 463 (592)
Q Consensus 384 ~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~ 463 (592)
++..+.+.++++.++..+|.|+..++.....++..++ +.++... ++...++-++..|.+..+... ++..
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll----~ll~~~~-~~v~e~i~vik~IlrkyP~~~------il~~ 443 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLL----QIVDRRP-ELLPQVVTAAKDIVRKYPELL------MLDT 443 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHH----HHhcCCc-hhHHHHHHHHHHHHHHCccHH------HHHH
Confidence 6666778888899999999988776655444444444 3333222 234456777777766655431 3455
Q ss_pred HHHHHcCCC-CCchHHHHHHHHHHHhhhhCCC---chHhHhhhcccCCCchH-hHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy9904 464 LIIIINRPN-TPKTLLENTAITIGRLGYVCPH---DVAPLCSSLRNIRDNEE-KDSAFRGMCAMITVNPGGVVQEFIFFC 538 (592)
Q Consensus 464 L~~~l~~~~-~~~~v~~na~~~lgrl~~~~~~---~~~p~~~~L~~~~d~~E-k~~a~~~l~~li~~~p~~~~~~~~~~~ 538 (592)
|...+.... ....++...+|-||..+..-++ .+..++..+. .++.+ |...+.+..++...+|......+..++
T Consensus 444 L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~--~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL 521 (746)
T PTZ00429 444 LVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIM--EHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVL 521 (746)
T ss_pred HHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 554332111 1366788888888887643221 1111222211 12222 666777788888778865555555555
Q ss_pred HHhhccCCCchhHHH
Q psy9904 539 DAVASWSTPKEDLKE 553 (592)
Q Consensus 539 ~~i~~~~~~~~~~~~ 553 (592)
....++ ..+.|++.
T Consensus 522 ~~~t~~-~~d~DVRD 535 (746)
T PTZ00429 522 ETVTTH-SDDPDVRD 535 (746)
T ss_pred HHHHhc-CCChhHHH
Confidence 444443 23345554
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.14 E-value=4.7e-09 Score=121.48 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=150.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccch
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 178 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l 178 (592)
++.|.+.|+|+++.+|.+|+.+|+.+. -+..+|.|...|+|+++.||.+|+.+|+.+.+.... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---~--- 686 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---A--- 686 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---h---
Confidence 455566778999999999999999864 245788899999999999999999999998764321 0
Q ss_pred HHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHH
Q psy9904 179 KPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTL 258 (592)
Q Consensus 179 ~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~l 258 (592)
+. +...|++++..||..++.+|+.... ... ..+...+. .++...-..++..|
T Consensus 687 -~~---------------------L~~~L~~~d~~VR~~A~~aL~~~~~----~~~-~~l~~~L~-D~d~~VR~~Av~aL 738 (897)
T PRK13800 687 -PA---------------------LRDHLGSPDPVVRAAALDVLRALRA----GDA-ALFAAALG-DPDHRVRIEAVRAL 738 (897)
T ss_pred -HH---------------------HHHHhcCCCHHHHHHHHHHHHhhcc----CCH-HHHHHHhc-CCCHHHHHHHHHHH
Confidence 11 1122334455666666555553210 000 00101110 01100001122222
Q ss_pred HHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy9904 259 ADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANS 337 (592)
Q Consensus 259 a~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~ 337 (592)
+. +..+ +.|... +.|+++.+ ..+.++|+.+...-.. . ++.|...+.
T Consensus 739 ~~-----~~~~-------~~l~~~---l~D~~~~VR~~aa~aL~~~~~~~~~--------~----~~~L~~ll~------ 785 (897)
T PRK13800 739 VS-----VDDV-------ESVAGA---ATDENREVRIAVAKGLATLGAGGAP--------A----GDAVRALTG------ 785 (897)
T ss_pred hc-----ccCc-------HHHHHH---hcCCCHHHHHHHHHHHHHhccccch--------h----HHHHHHHhc------
Confidence 11 0100 122222 23444443 3455555544321100 0 122222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh
Q psy9904 338 QNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS 417 (592)
Q Consensus 338 ~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~ 417 (592)
++|...|..++..|+.+.. . ..+.+.+...++|+++.||..|...|+.+.. +
T Consensus 786 -------D~d~~VR~aA~~aLg~~g~----~-------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~ 837 (897)
T PRK13800 786 -------DPDPLVRAAALAALAELGC----P-------PDDVAAATAALRASAWQVRQGAARALAGAAA----------D 837 (897)
T ss_pred -------CCCHHHHHHHHHHHHhcCC----c-------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------c
Confidence 2345667666666655411 0 1233456677778888888888888876531 3
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q psy9904 418 DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIG 486 (592)
Q Consensus 418 ~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lg 486 (592)
..++.|...++|++..||..|+++||.+. . -+...+.|...+++++ ..|+..|+.+|+
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~-------~~~a~~~L~~al~D~d--~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRWP--G-------DPAARDALTTALTDSD--ADVRAYARRALA 895 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhccC--C-------CHHHHHHHHHHHhCCC--HHHHHHHHHHHh
Confidence 34567777778888888888888888751 1 1234556666676554 678877777765
No 35
>PRK09687 putative lyase; Provisional
Probab=99.11 E-value=6.5e-09 Score=103.38 Aligned_cols=240 Identities=18% Similarity=0.111 Sum_probs=152.6
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh-ccCCh
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC-LSDKK 151 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~-L~D~~ 151 (592)
..+|..|+.+|..+.. +.+++.+...++|+++.+|..|+.+||++...-. .....+|.|... ++|++
T Consensus 37 ~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-----~~~~a~~~L~~l~~~D~d 104 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-----CQDNVFNILNNLALEDKS 104 (280)
T ss_pred HHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----chHHHHHHHHHHHhcCCC
Confidence 4589889998876542 3344555556789999999999999999864211 145677888776 79999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~ 231 (592)
+.||..|+.+||.++... ..+.+. +++.+...+.|++..||..+.++|+.+.
T Consensus 105 ~~VR~~A~~aLG~~~~~~-----~~~~~~------------------a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 105 ACVRASAINATGHRCKKN-----PLYSPK------------------IVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred HHHHHHHHHHHhcccccc-----cccchH------------------HHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 999999999999986421 111122 2233344456767888888877776541
Q ss_pred CCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhc
Q psy9904 232 QPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAG 310 (592)
Q Consensus 232 ~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~ 310 (592)
. +..++.|+..++ |++..+ ..+..+||.+ +.+
T Consensus 157 --------------------------------~--------~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~----~~~ 189 (280)
T PRK09687 157 --------------------------------D--------EAAIPLLINLLK---DPNGDVRNWAAFALNSN----KYD 189 (280)
T ss_pred --------------------------------C--------HHHHHHHHHHhc---CCCHHHHHHHHHHHhcC----CCC
Confidence 0 112445554432 444444 4566666655 111
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCC
Q psy9904 311 FLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPM 390 (592)
Q Consensus 311 f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~ 390 (592)
-+.+ .+.|...+. +++.+++..++..|+.+ |. +..++.|+..++++.
T Consensus 190 ----~~~~----~~~L~~~L~-------------D~~~~VR~~A~~aLg~~----~~--------~~av~~Li~~L~~~~ 236 (280)
T PRK09687 190 ----NPDI----REAFVAMLQ-------------DKNEEIRIEAIIGLALR----KD--------KRVLSVLIKELKKGT 236 (280)
T ss_pred ----CHHH----HHHHHHHhc-------------CCChHHHHHHHHHHHcc----CC--------hhHHHHHHHHHcCCc
Confidence 1222 233344331 23556776666555542 21 346788888888754
Q ss_pred hHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHH
Q psy9904 391 PEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGE 444 (592)
Q Consensus 391 ~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ 444 (592)
+|..++..||++.. +..+|.|.+.++ +++..|+..|.|++.+
T Consensus 237 --~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 --VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred --hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 78888888887754 356677777664 5678899999998854
No 36
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.6e-06 Score=90.62 Aligned_cols=355 Identities=11% Similarity=0.096 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHhhhchhhhHhHHHHHHHhhc-----C---CChhHHHHHHHHHHHHHhhch--hchhhhH-hhHHHHHHH
Q psy9904 77 KCSAAALDVLANVFREELLPVLLPILKETLF-----H---HDWEIKESGILALGAIAEGCM--NGMVPHL-NELVPFLIT 145 (592)
Q Consensus 77 k~aa~~L~~la~~~~~~vl~~ll~~l~~~l~-----s---~~~~~R~aa~~aLg~iaeg~~--~~i~~~l-~~lvp~l~~ 145 (592)
-+|+.++-.++..-+++.+..+++++...+. + .+.+..++|+..++++..-.. ..+...+ .-++++++.
T Consensus 388 laal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P 467 (970)
T COG5656 388 LAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP 467 (970)
T ss_pred HHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Confidence 3566777777777788878888888876662 1 357888999999999887222 1122122 348899999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 146 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 146 ~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.++++.-..|+.||..++++.+.... ...+..+.++..+|+ ++.+..|+..|+.+++.+
T Consensus 468 ~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl------------------~nn~lpv~ieAalAlq~f 526 (970)
T COG5656 468 AFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCL------------------KNNHLPVMIEAALALQFF 526 (970)
T ss_pred hhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH------------------hcCCcchhhhHHHHHHHH
Confidence 99999999999999999999877643 334445555555555 222444666666666554
Q ss_pred hhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHH
Q psy9904 226 SHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVAT 305 (592)
Q Consensus 226 a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~ 305 (592)
... +...+.+. .+++..|+.|+... +.-+..++-+|+.+++.
T Consensus 527 i~~-------------------------------~q~h~k~s--ahVp~tmekLLsLS-----n~feiD~LS~vMe~fVe 568 (970)
T COG5656 527 IFN-------------------------------EQSHEKFS--AHVPETMEKLLSLS-----NTFEIDPLSMVMESFVE 568 (970)
T ss_pred Hhc-------------------------------hhhhHHHH--hhhhHHHHHHHHhc-----ccccchHHHHHHHHHHH
Confidence 210 11112222 56667777776532 23344577888999999
Q ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCChhHH-HHHHHHHHHHHhhhhh--hhHhhhccCchHHH
Q psy9904 306 ALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFD-APDKDFM-IVALDLLSGLAEGLDM--HIDSLVSNSNIMHL 381 (592)
Q Consensus 306 ~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~-~~d~~~~-~~ald~l~~l~~~lg~--~~~~~~~~~~l~~~ 381 (592)
.+..+..||++.....+++...+.-+... .+.++..+ .+|++.. ...+..+.+++-.+.. ....|+. ..+.|.
T Consensus 569 ~fseELspfa~eLa~~Lv~qFlkiaq~l~--ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le-~slypv 645 (970)
T COG5656 569 YFSEELSPFAPELAGSLVRQFLKIAQSLL--ENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE-VSLYPV 645 (970)
T ss_pred HhHHhhchhHHHHHHHHHHHHHHHHHHHH--cCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHH
Confidence 99999999999887665553332222211 11122222 2244432 2334455555555442 2333443 356777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCCh-hHHHHHHHHHHHHHHhcCchhh---hhH
Q psy9904 382 LYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI-SVCNNATWAIGEISVKLGEDMR---RYV 457 (592)
Q Consensus 382 l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~-~v~~~A~~~Lg~ia~~~~~~~~---p~~ 457 (592)
+-..+.+.-.++-+.++.++..+.-..+ ++.|....++..+.+.+.++.. .-...+.-++..+...++.+|. -|.
T Consensus 646 i~Filkn~i~dfy~Ea~dildg~tf~sk-eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~ 724 (970)
T COG5656 646 ISFILKNEISDFYQEALDILDGYTFMSK-EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYG 724 (970)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhHHHH-HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchh
Confidence 7777888788999999999988765443 4557788888888888877653 4445666778888777665543 255
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 458 ~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
.-++......+.+++..-.=...+|.-+-.++.+..+
T Consensus 725 ~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 725 SICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 5555666666766552112234555555555555554
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=99.05 E-value=2e-10 Score=84.52 Aligned_cols=55 Identities=38% Similarity=0.631 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy9904 111 WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 165 (592)
Q Consensus 111 ~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l 165 (592)
|.+|++|+.+||.+++++++.+.+|+++++|.|+.+|+|+++.||.+||||||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999975
No 38
>KOG2022|consensus
Probab=99.04 E-value=4e-06 Score=90.95 Aligned_cols=353 Identities=16% Similarity=0.209 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHH-hcc
Q psy9904 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFHHD-----WEIKESGILALGAIAEGCMNGMVPHLNELVPFLIT-CLS 148 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~-----~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~-~L~ 148 (592)
.|+.-..++-..=..+|+.++..+...+.+.+.+.+ |.+-++.+..+-.+++..+..-.+.++.++...-. .++
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S 519 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS 519 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc
Confidence 677777777777778899999999999999998766 99999999999999999987766776666666543 234
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhh
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 228 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~ 228 (592)
-++|..-.++..++|.++.|+++ +..|+++.++.|++.+ ..++...
T Consensus 520 ~~n~ql~~Tss~~igs~s~~l~e--~P~~ln~sl~~L~~~L------------------h~sk~s~-------------- 565 (982)
T KOG2022|consen 520 APNPQLLSTSSDLIGSLSNWLGE--HPMYLNPSLPLLFQGL------------------HNSKESE-------------- 565 (982)
T ss_pred cCChhHHHHHHHHHHHHHHHHhc--CCcccCchHHHHHHHh------------------cCchHHH--------------
Confidence 45788888999999999999986 4556777666666654 1011111
Q ss_pred hccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHh
Q psy9904 229 VVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQ 308 (592)
Q Consensus 229 ~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g 308 (592)
...+.+.++|+.+..++. ||.+.++..+-..++.....+.++..++.|+|++.....
T Consensus 566 ---------------------q~i~tl~tlC~~C~~~L~--py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 566 ---------------------QAISTLKTLCETCPESLD--PYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred ---------------------HHHHHHHHHHHhhhhhCc--hHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc
Confidence 123456778888888886 899998888776655422222335679999999998877
Q ss_pred hcc-ccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhH-HHHHHHHHHHHHhhhhhh--h----Hhh-----hcc
Q psy9904 309 AGF-LPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDF-MIVALDLLSGLAEGLDMH--I----DSL-----VSN 375 (592)
Q Consensus 309 ~~f-~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~-~~~ald~l~~l~~~lg~~--~----~~~-----~~~ 375 (592)
.+- ..|+..++..++.-+..++. | +.+.++... ...-+.++++++..+-.. . .|- +++
T Consensus 623 pEe~~kyl~~lin~il~qle~~l~--------~-~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 623 PEEIPKYLMKLINPILSQLEINLA--------P-GIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhc--------C-CCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcccccc
Confidence 432 22444433333333333221 1 112222222 234567788887664210 0 000 001
Q ss_pred -------CchHHHHHHHhC--CCChHHHHHHHHHHHHHHHHchhhh-hhhhhhHHHHHHhccCCCChhHHHHHHHHHHHH
Q psy9904 376 -------SNIMHLLYQCMQ--DPMPEVRQSSFALLGDLTKACFSHV-HPCISDFMPILGQNLNPDLISVCNNATWAIGEI 445 (592)
Q Consensus 376 -------~~l~~~l~~~l~--~~~~~vR~~a~~~l~~la~~~~~~~-~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~i 445 (592)
.++|+++-+.+. -.+.+|-+.++...+.=.+..++.| .|+++++.+.+.+-...... +.-.++..
T Consensus 694 ~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~l~~~ 768 (982)
T KOG2022|consen 694 FPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA-----VTLSLIAA 768 (982)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH-----HHHHHHHH
Confidence 123333333222 1234555555544433344445557 88899999999884433222 22222221
Q ss_pred H---HhcCchhhhhHH----HHHHHHHHHHcCCC--CCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 446 S---VKLGEDMRRYVP----MVINQLIIIINRPN--TPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 446 a---~~~~~~~~p~~~----~il~~L~~~l~~~~--~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
+ ....+...|.++ ..++.-+.++++.. ....+.+.....+..+....|..+.+
T Consensus 769 ~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 769 CLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence 1 111122333333 33444444554422 23567777788888888778865433
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.04 E-value=7.7e-10 Score=90.73 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCC
Q psy9904 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGM 192 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~ 192 (592)
.|++|+.+|++++.+++..+.+|++.|+|.++.++.|++++||+.||.+|.+++++..+. .-++|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~------------- 67 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFN------------- 67 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------------
Confidence 699999999999999998899999999999999999999999999999999999987652 223444
Q ss_pred ccchhhhHHHHHHhcCchhhHHHHHH
Q psy9904 193 VPHLNELVPFLITCLSDKKALVRAIT 218 (592)
Q Consensus 193 vq~l~~l~p~l~~il~d~~~~vr~~a 218 (592)
++.+.|..++.|++..||..|
T Consensus 68 -----~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 68 -----EIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred -----HHHHHHHHHHcCCchhHHHHH
Confidence 444555556678888887653
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.03 E-value=2.8e-08 Score=115.14 Aligned_cols=241 Identities=18% Similarity=0.203 Sum_probs=136.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHH
Q psy9904 139 LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAIT 218 (592)
Q Consensus 139 lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a 218 (592)
.++.|+..|.|+++.||..|+.+|+.+.. ++.+|.|...|+|++..||..|
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------------------------~~~~~~L~~aL~D~d~~VR~~A 672 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------------------------PGFGPALVAALGDGAAAVRRAA 672 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------------------------hhHHHHHHHHHcCCCHHHHHHH
Confidence 45677888899999999999999998742 1233445556678888999998
Q ss_pred HhhhhhhhhhhccCCcccchHHHHHh-hh-hHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hH
Q psy9904 219 CWTLSRYSHWVVSQPHDSYLKPLMTE-HK-NLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FP 295 (592)
Q Consensus 219 ~~~L~~~a~~~~~~~~~~y~~~~~~~-~~-~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~ 295 (592)
+.+|..+...... .+.+...++. .. ....+.++++.+. .. . ...|+. .+.|++..+ ..
T Consensus 673 a~aL~~l~~~~~~---~~~L~~~L~~~d~~VR~~A~~aL~~~~----~~----~-----~~~l~~---~L~D~d~~VR~~ 733 (897)
T PRK13800 673 AEGLRELVEVLPP---APALRDHLGSPDPVVRAAALDVLRALR----AG----D-----AALFAA---ALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHhccCc---hHHHHHHhcCCCHHHHHHHHHHHHhhc----cC----C-----HHHHHH---HhcCCCHHHHHH
Confidence 8888776432211 1111111111 11 1112333333221 00 0 112232 223444443 34
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhcc
Q psy9904 296 LLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSN 375 (592)
Q Consensus 296 ~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~ 375 (592)
++.+|+.+ +. . +.+...+ .+++.++|..+...|+.+...-
T Consensus 734 Av~aL~~~----~~-----~--------~~l~~~l-------------~D~~~~VR~~aa~aL~~~~~~~---------- 773 (897)
T PRK13800 734 AVRALVSV----DD-----V--------ESVAGAA-------------TDENREVRIAVAKGLATLGAGG---------- 773 (897)
T ss_pred HHHHHhcc----cC-----c--------HHHHHHh-------------cCCCHHHHHHHHHHHHHhcccc----------
Confidence 45555442 11 0 1112222 1234666766666665543211
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
....+.+...++|+++.||.+|+..|+.+... +.+.+.+...++++++.||..|+++||.+..
T Consensus 774 ~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------- 836 (897)
T PRK13800 774 APAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-------- 836 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc--------
Confidence 12245666777888888888888888766321 1233456667777788888888888876531
Q ss_pred hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Q psy9904 456 YVPMVINQLIIIINRPNTPKTLLENTAITIGRL 488 (592)
Q Consensus 456 ~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl 488 (592)
+..++.|.++|++++ ..|+..|+.+||++
T Consensus 837 --~~a~~~L~~~L~D~~--~~VR~~A~~aL~~~ 865 (897)
T PRK13800 837 --DVAVPALVEALTDPH--LDVRKAAVLALTRW 865 (897)
T ss_pred --cchHHHHHHHhcCCC--HHHHHHHHHHHhcc
Confidence 234466777777655 77888888888886
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=98.90 E-value=1.6e-05 Score=88.74 Aligned_cols=119 Identities=15% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHH
Q psy9904 76 RKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVR 155 (592)
Q Consensus 76 Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR 155 (592)
|.+--+.+..++.+ .+ +..+++-+..++++++-..|+-+.+.+...++.-++. .--.+..+.+-++|++|.||
T Consensus 50 k~alKkvIa~mt~G--~D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaINtl~KDl~d~Np~IR 122 (746)
T PTZ00429 50 KAAVKRIIANMTMG--RD-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAVNTFLQDTTNSSPVVR 122 (746)
T ss_pred HHHHHHHHHHHHCC--CC-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHHHHHHHHcCCCCHHHH
Confidence 33333455555544 33 3445555556778999999999999999888755441 23457778889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 156 AITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
..|..+|+++.. ...++. +++.+.+.+.|.++.||..|+.++.++-
T Consensus 123 aLALRtLs~Ir~-------~~i~e~------------------l~~~lkk~L~D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 123 ALAVRTMMCIRV-------SSVLEY------------------TLEPLRRAVADPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred HHHHHHHHcCCc-------HHHHHH------------------HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999998642 222333 3344455567888999998888877653
No 42
>KOG1993|consensus
Probab=98.90 E-value=4.4e-05 Score=82.11 Aligned_cols=473 Identities=16% Similarity=0.232 Sum_probs=246.7
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC--------C-hhHHHHHHHHHHHHHhhchhch--hhhH-hh
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH--------D-WEIKESGILALGAIAEGCMNGM--VPHL-NE 138 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~--------~-~~~R~aa~~aLg~iaeg~~~~i--~~~l-~~ 138 (592)
-++++|-||....-.+=..+++-++|+++..+....+-+ + --.+.|..-|+|..+-...+.+ ...+ ..
T Consensus 409 wey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ 488 (978)
T KOG1993|consen 409 WEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEA 488 (978)
T ss_pred ceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh
Confidence 457899999999999999999888999999996443322 1 2345666667887776554321 2222 23
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCch-hhHHHHH
Q psy9904 139 LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDK-KALVRAI 217 (592)
Q Consensus 139 lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~-~~~vr~~ 217 (592)
++|-+-. -.+..-..|....|-+|.-.+. +...+.-+-+-..+ ..++.|. +..||-.
T Consensus 489 llpEl~~-~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~------------------lnLL~d~~D~vV~Lt 546 (978)
T KOG1993|consen 489 LLPELAN-DHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAF------------------LNLLQDQNDLVVRLT 546 (978)
T ss_pred hCHHhhh-cccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHH------------------HHhcCccccceeehH
Confidence 4444431 1112234678888988875442 11111111111222 2233333 3344555
Q ss_pred HHhhhhhhhhhh--ccCCcccchHHHHHh----------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhh
Q psy9904 218 TCWTLSRYSHWV--VSQPHDSYLKPLMTE----------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285 (592)
Q Consensus 218 a~~~L~~~a~~~--~~~~~~~y~~~~~~~----------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~ 285 (592)
++.++.-....- .++.|.||+.-+... .......+..++++...+++.+. ||...++..+-..|+.
T Consensus 547 t~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~--P~~~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 547 TARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA--PYASTIVQYLPLLWEE 624 (978)
T ss_pred HHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhh
Confidence 555554333221 134556665322221 11223567788889999999987 8999999888888875
Q ss_pred cccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCh-hHHHHHHHHHHHHHh
Q psy9904 286 LKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDK-DFMIVALDLLSGLAE 363 (592)
Q Consensus 286 ~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~ald~l~~l~~ 363 (592)
-+ +++-+ .+++.++..++.++|..-.++.+- +++.|..+ .||++ |+. -+.+-.+++.+....
T Consensus 625 s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~f----L~pVIel~--------~D~~s---P~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 625 SE-EEPLLRCALLATLRNLVNALGAQSFEFYPF----LYPVIELS--------TDPSS---PEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred hc-cCcHHHHHHHHHHHHHHHHhccCCccchHH----HHHHHHHh--------cCCCC---CceeehhhhHHHHHHHHHh
Confidence 32 22222 577888999999999754333221 12333332 12221 111 122234445554443
Q ss_pred hhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh-hhhhhhhHHHHHHhccCCCChhHHHHHHHHH
Q psy9904 364 GLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH-VHPCISDFMPILGQNLNPDLISVCNNATWAI 442 (592)
Q Consensus 364 ~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~~~~v~~~A~~~L 442 (592)
.. ..+.|-+ -.++|.+...++.. .+.-..++.++...+---+.. ...|...+...+...+. +||+...-++
T Consensus 689 n~-~~l~p~l--l~L~p~l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~----dvr~egl~av 760 (978)
T KOG1993|consen 689 NS-QKLTPEL--LLLFPHLLYIIEQS-TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD----DVRNEGLQAV 760 (978)
T ss_pred cc-cccCHHH--HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHH
Confidence 32 1121111 12344444444332 222233444443332222211 22233333333333322 2343332222
Q ss_pred HH---HHHhcCchhhh-hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh------------------Hh
Q psy9904 443 GE---ISVKLGEDMRR-YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP------------------LC 500 (592)
Q Consensus 443 g~---ia~~~~~~~~p-~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p------------------~~ 500 (592)
-. ++....+-+.+ +.+.+++.+...+-..+..+-+...-..-+||+...+|+.+.. |+
T Consensus 761 Lkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI 840 (978)
T KOG1993|consen 761 LKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWI 840 (978)
T ss_pred HHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 22222111111 3345555555544322223556666777888888888864321 77
Q ss_pred hhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHHHH-------Hhh---c-----c------------CC-------
Q psy9904 501 SSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCD-------AVA---S-----W------------ST------- 546 (592)
Q Consensus 501 ~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~~~-------~i~---~-----~------------~~------- 546 (592)
...+.+.+.+.|.--.-++..+...|...+...|..|.+ -|. + | .+
T Consensus 841 ~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~eV~ed~~g~~~~~~~~d~~~e~~~~~d~tteq~~ 920 (978)
T KOG1993|consen 841 LLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSEVMEDANGDATDYHLNDDLSEQGVYEDETTEQDT 920 (978)
T ss_pred HHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHHHhhhccCchHHHHhhhhhhccccCCchhhHHHH
Confidence 778888777666666667777776533233332222221 111 0 0 00
Q ss_pred ---------C--chhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhC
Q psy9904 547 ---------P--KEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYG 591 (592)
Q Consensus 547 ---------~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 591 (592)
| +-.+++-+...+...++++|.+.+++++.+..|++.+.++...+
T Consensus 921 r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 921 RHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred HHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 0 01244556777777888899888999999999999999987653
No 43
>KOG1059|consensus
Probab=98.89 E-value=7.6e-06 Score=86.89 Aligned_cols=237 Identities=18% Similarity=0.248 Sum_probs=138.2
Q ss_pred HHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHH
Q psy9904 81 AALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCW 160 (592)
Q Consensus 81 ~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~ 160 (592)
.+|+-|+....+.+-..+-+=+..++++..+.+|+-|++++-.+....++.++ ..+|.|.+.|.||+|.|.++|..
T Consensus 128 iAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr----~~FprL~EkLeDpDp~V~SAAV~ 203 (877)
T KOG1059|consen 128 LALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR----PCFPRLVEKLEDPDPSVVSAAVS 203 (877)
T ss_pred heecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh----hhHHHHHHhccCCCchHHHHHHH
Confidence 45565655444444445555555667899999999999999999888887654 46777889999999999999888
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHH
Q psy9904 161 TLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKP 240 (592)
Q Consensus 161 aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~ 240 (592)
.+..+|.--+ ..|+ .|.|.+..+|.+... -|-|-+
T Consensus 204 VICELArKnP----knyL-------------------~LAP~ffkllttSsN------NWmLIK---------------- 238 (877)
T KOG1059|consen 204 VICELARKNP----QNYL-------------------QLAPLFYKLLVTSSN------NWVLIK---------------- 238 (877)
T ss_pred HHHHHHhhCC----cccc-------------------cccHHHHHHHhccCC------CeehHH----------------
Confidence 8777776432 2332 234444444422110 011111
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHH
Q psy9904 241 LMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYR 320 (592)
Q Consensus 241 ~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~ 320 (592)
++..++.++ .+ .|..-..++|+|.+.+++. ....-++||+..++...-..=.|--....+
T Consensus 239 ----------iiKLF~aLt-----pl-EPRLgKKLieplt~li~sT----~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 239 ----------LLKLFAALT-----PL-EPRLGKKLIEPITELMEST----VAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred ----------HHHHHhhcc-----cc-CchhhhhhhhHHHHHHHhh----HHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 111222221 11 1233345566666554321 112457899988876511111122233445
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHH
Q psy9904 321 RCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFAL 400 (592)
Q Consensus 321 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~ 400 (592)
-|+.-|...++ +.|..+.=..+-+++.|+..-.... ...-.+++.||.|.++++|-.|+.+
T Consensus 299 LCvqKLr~fie-------------dsDqNLKYlgLlam~KI~ktHp~~V------qa~kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 299 LCVQKLRIFIE-------------DSDQNLKYLGLLAMSKILKTHPKAV------QAHKDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred HHHHHHhhhhh-------------cCCccHHHHHHHHHHHHhhhCHHHH------HHhHHHHHHHhccCCchhHHHHHHH
Confidence 56555555442 2244443344556666655433222 2345789999999999999999999
Q ss_pred HHHHH
Q psy9904 401 LGDLT 405 (592)
Q Consensus 401 l~~la 405 (592)
+-.+.
T Consensus 360 l~gmV 364 (877)
T KOG1059|consen 360 LYGMV 364 (877)
T ss_pred HHHHh
Confidence 87765
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.89 E-value=6.8e-06 Score=89.11 Aligned_cols=341 Identities=21% Similarity=0.201 Sum_probs=207.3
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHH
Q psy9904 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 181 (592)
Q Consensus 102 l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~l 181 (592)
+-.++++.+...-..++..|+.+.+.... ..-.+++.+++..+|.+|++.||.-++++|++++.+-.. .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~---------~ 111 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG---------A 111 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH---------H
Confidence 44556666655556677777777764431 123788999999999999999999999999998753211 1
Q ss_pred HHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHH
Q psy9904 182 MTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADS 261 (592)
Q Consensus 182 l~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~ 261 (592)
...+.+ .+++|.+...+.|++..|...|+.+|..+++.-
T Consensus 112 ~~~~~~---------~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-------------------------------- 150 (503)
T PF10508_consen 112 AQLLVD---------NELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-------------------------------- 150 (503)
T ss_pred HHHhcC---------ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--------------------------------
Confidence 111111 467778888888888888777777776653210
Q ss_pred hcccCCChhhHhhh-----hHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhh
Q psy9904 262 VGHHLNKPEYISLL-----MPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMAN 336 (592)
Q Consensus 262 ~g~~~~~~~y~~~l-----mp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~ 336 (592)
+.++.+ .+.|.+.+.. .++--+.++++++..++......+ .+... ..+++.+...+
T Consensus 151 --------~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~--sgll~~ll~eL------ 211 (503)
T PF10508_consen 151 --------EGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAA-EAVVN--SGLLDLLLKEL------ 211 (503)
T ss_pred --------hhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHH-HHHHh--ccHHHHHHHHh------
Confidence 111112 3333332211 111123578888888776544332 11111 01222223222
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHH------HHHHHHHHHHchh
Q psy9904 337 SQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSS------FALLGDLTKACFS 410 (592)
Q Consensus 337 ~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a------~~~l~~la~~~~~ 410 (592)
+.+|--.+..++++++.++. ..+-..|+.+..+++.+...+.+...+-|-.+ +...|.++...+.
T Consensus 212 -------~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 212 -------DSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred -------cCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 12344456789999999998 44445777666788888888765432222222 2566667776566
Q ss_pred hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc-h-h----hhhHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q psy9904 411 HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-D-M----RRYVPMVINQLIIIINRPNTPKTLLENTAIT 484 (592)
Q Consensus 411 ~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-~-~----~p~~~~il~~L~~~l~~~~~~~~v~~na~~~ 484 (592)
.+..-.|.++..+...++..+...+..|+-++|.|+....+ . + .+-+..++..+.....+.. ..++-.+..|
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~--~~lk~r~l~a 360 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS--TELKLRALHA 360 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc--hHHHHHHHHH
Confidence 66666788888888888888999999999999999844321 1 2 2344556666666655433 5788888899
Q ss_pred HHHhhhhCCC----ch---H-hHhhhccc----------C-CCchH-hHHHHHHHHHHHh
Q psy9904 485 IGRLGYVCPH----DV---A-PLCSSLRN----------I-RDNEE-KDSAFRGMCAMIT 524 (592)
Q Consensus 485 lgrl~~~~~~----~~---~-p~~~~L~~----------~-~d~~E-k~~a~~~l~~li~ 524 (592)
++.+....++ ++ . .|.+.+.. . +..+| |..+|+-+..++.
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 9988543332 12 1 16544322 1 23355 6667776666664
No 45
>KOG1060|consensus
Probab=98.88 E-value=1.8e-06 Score=92.31 Aligned_cols=398 Identities=16% Similarity=0.202 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHHHHHhhhchh-hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 72 DWNLRKCSAAALDVLANVFREE-LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~-vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
+-.+||---.-|=+.|+.-++- ++. +..++..++|+++..|-.|+.+|..|=-.. ..|-++-.+-++..|+
T Consensus 84 n~EVKkLVyvYLlrYAEeqpdLALLS--IntfQk~L~DpN~LiRasALRvlSsIRvp~------IaPI~llAIk~~~~D~ 155 (968)
T KOG1060|consen 84 NIEVKKLVYVYLLRYAEEQPDLALLS--INTFQKALKDPNQLIRASALRVLSSIRVPM------IAPIMLLAIKKAVTDP 155 (968)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceeee--HHHHHhhhcCCcHHHHHHHHHHHHhcchhh------HHHHHHHHHHHHhcCC
Confidence 3446666666666666665542 211 345566667777777776666666543211 1234555566666777
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCcc-----chhhhHHHH-----------HHhcCchhhHH
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP-----HLNELVPFL-----------ITCLSDKKALV 214 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq-----~l~~l~p~l-----------~~il~d~~~~v 214 (592)
.|.||..|+.|+-.+-..-.+ ....+..+++.|+..-.+.|- +|+++.|-= ..++.|-+.--
T Consensus 156 s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg 233 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG 233 (968)
T ss_pred cHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh
Confidence 777777777777666543222 223566666667665433332 334443321 12232323333
Q ss_pred HHHHHhhhhhhhhhhccCC-----------------------cccc-----hHHHHHhhhhHHHH--HHHHHHHHHHhcc
Q psy9904 215 RAITCWTLSRYSHWVVSQP-----------------------HDSY-----LKPLMTEHKNLLIL--YDAIGTLADSVGH 264 (592)
Q Consensus 215 r~~a~~~L~~~a~~~~~~~-----------------------~~~y-----~~~~~~~~~~l~~~--~dai~~la~~~g~ 264 (592)
+......|-+||+.--..+ ..|| ..-+++..+.+... -..+-+.|. +--
T Consensus 234 QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq-l~y 312 (968)
T KOG1060|consen 234 QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ-LFY 312 (968)
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh-HHH
Confidence 3445555666765321000 0222 22223322322100 000101111 111
Q ss_pred cCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHH-----HHHHHH-HHHHHHhhc
Q psy9904 265 HLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRC-----VSLIEQ-TLNQHMANS 337 (592)
Q Consensus 265 ~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~-----~~~l~~-~l~~~~~~~ 337 (592)
.++.+.-...|..+|+..+. ..+. ...++.++..++.....-|.||+...|-+- ++++.- .|..-. ..
T Consensus 313 ~lAP~~~~~~i~kaLvrLLr----s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La-~e 387 (968)
T KOG1060|consen 313 HLAPKNQVTKIAKALVRLLR----SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA-NE 387 (968)
T ss_pred hhCCHHHHHHHHHHHHHHHh----cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh-hh
Confidence 22211134556677776443 2233 367899999999998889999988754221 111110 010000 00
Q ss_pred CCC-----C---CCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 338 QNP-----E---QFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 338 ~~~-----~---~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
.+- | .+...|++|...++..||..+...+.-- +.+|..++..++..+..|-..+...|-.|.+.-+
T Consensus 388 sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 388 SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 000 0 0112355677778888888877776421 5789999999999899999999999988887766
Q ss_pred hhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 410 SHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 410 ~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
..-..++.++...+ ..+ .-+..|...+|.+|+.+... -...+.++..+.+-+.++. ..++-.+.....++-
T Consensus 462 ~~h~~ii~~La~ll-dti--~vp~ARA~IiWLige~~e~v----pri~PDVLR~laksFs~E~--~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 462 AEHLEILFQLARLL-DTI--LVPAARAGIIWLIGEYCEIV----PRIAPDVLRKLAKSFSDEG--DEVKLQILNLSAKLY 532 (968)
T ss_pred HHHHHHHHHHHHHh-hhh--hhhhhhceeeeeehhhhhhc----chhchHHHHHHHHhhcccc--chhhHHHHHhhhhhe
Confidence 54433444433333 111 23456778899999998653 2356778888888887665 678888888888888
Q ss_pred hhCCCchHhHh
Q psy9904 490 YVCPHDVAPLC 500 (592)
Q Consensus 490 ~~~~~~~~p~~ 500 (592)
.++.+++.-.+
T Consensus 533 l~~~~~~kll~ 543 (968)
T KOG1060|consen 533 LTNIDQTKLLV 543 (968)
T ss_pred EechhhHHHHH
Confidence 87776655433
No 46
>KOG1992|consensus
Probab=98.85 E-value=3.5e-05 Score=83.17 Aligned_cols=357 Identities=15% Similarity=0.205 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc------CCChhHHHHHHHHHHHHHhh-------chh--c---hhhh
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLF------HHDWEIKESGILALGAIAEG-------CMN--G---MVPH 135 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~------s~~~~~R~aa~~aLg~iaeg-------~~~--~---i~~~ 135 (592)
+-|++|...+..|+..+...+.+.+-..++..+. |.+|+.+..++..+.+++-. +.. . +..+
T Consensus 377 TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~F 456 (960)
T KOG1992|consen 377 TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDF 456 (960)
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHH
Confidence 3588888999999999966666666666666665 56899999999988888743 221 1 1111
Q ss_pred -HhhHHHHHHHhccCChHHHHHHHH----------------HHHHHHHHHhhcCC--CccchHHHHHHHHccccC-Ccc-
Q psy9904 136 -LNELVPFLITCLSDKKALVRAITC----------------WTLSRYSHWVVSQP--HDSYLKPLMTEMLGCMNG-MVP- 194 (592)
Q Consensus 136 -l~~lvp~l~~~L~D~~~~VR~~a~----------------~aL~~l~~~~~~~~--~~~~l~~ll~~Ll~~l~~-~vq- 194 (592)
..+++|.|...=..++|.++..+. .++-++..++..+. .+.|-.--++.++..-.+ +.-
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~i 536 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKI 536 (960)
T ss_pred HHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccc
Confidence 122333333211123344443333 22333333322110 112222222222211111 111
Q ss_pred -chhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHh
Q psy9904 195 -HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYIS 273 (592)
Q Consensus 195 -~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~ 273 (592)
+-..+.||+..++ ..++.++ + .+.....+|+...+ -.+-........ |+.+
T Consensus 537 f~~~~iap~~~~ll---~nLf~a~-----s-----~p~~~EneylmKaI-------------mRii~i~~~~i~--p~~~ 588 (960)
T KOG1992|consen 537 FGAEDIAPFVEILL---TNLFKAL-----S-----LPGKAENEYLMKAI-------------MRIISILQSAII--PHAP 588 (960)
T ss_pred cchhhcchHHHHHH---HHHHHhc-----c-----CCcccccHHHHHHH-------------HHHHHhCHHhhh--hhhh
Confidence 1156677777777 4443222 1 11112344543322 111111222222 6777
Q ss_pred hhhHHHHHHHhhc-ccC-Cccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhH
Q psy9904 274 LLMPPLIQKWNIL-KDE-DKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDF 350 (592)
Q Consensus 274 ~lmp~L~~~~~~~-~d~-~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 350 (592)
.+++.|.+..... +.. ++.- --++|+++.+.+..++.--.-....-..+++.++..+.++. .+|
T Consensus 589 ~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-------------~Ef 655 (960)
T KOG1992|consen 589 ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI-------------QEF 655 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 7788877764433 221 2221 36899999998887764311122222334555566665432 467
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHH---HHHHHHHHHHHHHchhhhh--hhhhhHHHHHHh
Q psy9904 351 MIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVR---QSSFALLGDLTKACFSHVH--PCISDFMPILGQ 425 (592)
Q Consensus 351 ~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR---~~a~~~l~~la~~~~~~~~--~~l~~llp~l~~ 425 (592)
.-.++.+++.++..-+..+. +.+++++--+++..-.+-+ -+...++..+.+.-...+. ..++.++-.+-+
T Consensus 656 iPYvfQlla~lve~~~~~ip-----~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqk 730 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSGTIP-----DSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQK 730 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHH
Confidence 77788888888877654221 1223333223321111111 1233444444444333333 345556665555
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHcCCCCCchHH
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLIIIINRPNTPKTLL 478 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~v~ 478 (592)
.+.+...+ .-....|..|....+ ..+.||+.++...+...++++.+.+-++
T Consensus 731 LiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k 782 (960)
T KOG1992|consen 731 LIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVK 782 (960)
T ss_pred HhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHH
Confidence 54332111 235556666666665 4578999999999999999887654343
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.84 E-value=1.4e-07 Score=91.76 Aligned_cols=200 Identities=11% Similarity=0.171 Sum_probs=128.9
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHc-----hhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH
Q psy9904 384 QCMQDPMPEVRQSSFALLGDLTKAC-----FSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458 (592)
Q Consensus 384 ~~l~~~~~~vR~~a~~~l~~la~~~-----~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~ 458 (592)
..-.+.+.+.|..++.-|..++... .+.+.+++..+++.+...+++....|..+||.+++.++..++..|.||++
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 3345678999999999999998776 34455566677788999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC--Cch-HhHhhhcccCCCchHhHHHHHHHHHHHhhCc---hhhhh
Q psy9904 459 MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP--HDV-APLCSSLRNIRDNEEKDSAFRGMCAMITVNP---GGVVQ 532 (592)
Q Consensus 459 ~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~--~~~-~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p---~~~~~ 532 (592)
.++|.|++.+.++. ..+++.|..|+..|+.+++ ..+ .+.+.....-+...-|..+...+..++...+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSK--KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHcccc--HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 99999999998754 7788999999999988776 333 4444433333334447788999999987655 33332
Q ss_pred h--HHHHHHHhhcc-CCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHH
Q psy9904 533 E--FIFFCDAVASW-STPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRL 586 (592)
Q Consensus 533 ~--~~~~~~~i~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l 586 (592)
. +..+...+... .++++++++..++.+..|.+.+|+ .=..+++.|+|.+|..|
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~-~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE-RAESILSMLDPNIQKYL 227 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H-HH---------------
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH-hhccchhcchhcccccC
Confidence 2 45666766654 578899999999999999999996 57888899999988765
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=3.5e-06 Score=91.27 Aligned_cols=298 Identities=20% Similarity=0.299 Sum_probs=178.4
Q ss_pred HHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh-HhhHHHHHHHhccCChHHHHH
Q psy9904 79 SAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH-LNELVPFLITCLSDKKALVRA 156 (592)
Q Consensus 79 aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~-l~~lvp~l~~~L~D~~~~VR~ 156 (592)
+..+|+.+-.... +.+.+...+++...++++++.+|.-++.+++.++++....+... -..+++.++.+|.|++..|..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 3456776666544 56789999999999999999999999999999987654422221 267999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCccc
Q psy9904 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDS 236 (592)
Q Consensus 157 ~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~ 236 (592)
.|..+|.+++..- ..+..++ . +.+.+.|..++...+..+|.-
T Consensus 138 ~A~~~L~~l~~~~------~~~~~l~----~---------~~~~~~L~~l~~~~~~~vR~R------------------- 179 (503)
T PF10508_consen 138 AAIKALKKLASHP------EGLEQLF----D---------SNLLSKLKSLMSQSSDIVRCR------------------- 179 (503)
T ss_pred HHHHHHHHHhCCc------hhHHHHh----C---------cchHHHHHHHHhccCHHHHHH-------------------
Confidence 9999999998631 2222221 1 112333333332222223222
Q ss_pred chHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhh--hhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhcccc
Q psy9904 237 YLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISL--LMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLP 313 (592)
Q Consensus 237 y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~--lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~p 313 (592)
+|+.+..++..- ++.. .++.. +++.++..+. ++|--+ ..++|.++.++. .+.-..
T Consensus 180 --------------v~el~v~i~~~S-~~~~--~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~--~~~g~~ 237 (503)
T PF10508_consen 180 --------------VYELLVEIASHS-PEAA--EAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAE--TPHGLQ 237 (503)
T ss_pred --------------HHHHHHHHHhcC-HHHH--HHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHc--ChhHHH
Confidence 244444443221 1111 23332 5666665432 322212 578899999887 333344
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-ChhHH-HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCCh
Q psy9904 314 YCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAP-DKDFM-IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP 391 (592)
Q Consensus 314 y~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~-d~~~~-~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (592)
|+... .+++.|...+... . +++ -..+. ...+...+.++..-...+.... +.++..+...++..+.
T Consensus 238 yL~~~--gi~~~L~~~l~~~---~------~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~ 304 (503)
T PF10508_consen 238 YLEQQ--GIFDKLSNLLQDS---E------EDPRLSSLLLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDP 304 (503)
T ss_pred HHHhC--CHHHHHHHHHhcc---c------cCCcccchhhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCCh
Confidence 55431 2233333333221 0 111 12221 2233455555554222232222 4677788888888899
Q ss_pred HHHHHHHHHHHHHHHHchh-h-----hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc
Q psy9904 392 EVRQSSFALLGDLTKACFS-H-----VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKL 449 (592)
Q Consensus 392 ~vR~~a~~~l~~la~~~~~-~-----~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~ 449 (592)
..+..|+.++|.++..... . ..+-+..++..+.........++|..++-+++.+....
T Consensus 305 ~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 305 TIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 9999999999999855422 1 12344556666666667777789999999999986433
No 49
>KOG0211|consensus
Probab=98.79 E-value=5.2e-06 Score=91.80 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC
Q psy9904 351 MIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 351 ~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~ 430 (592)
+...++.+..++..+|..| +. +.+-+++...+.+...++|..+...+-.++..+|..+ +...++|.++....++
T Consensus 496 r~ail~~ip~la~q~~~~~---~~-~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~ 569 (759)
T KOG0211|consen 496 RLAILEYIPQLALQLGVEF---FD-EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQD 569 (759)
T ss_pred HHHHHHHHHHHHHhhhhHH---hh-HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCc
Confidence 3567788888888887443 21 3456777888888889999999999999999999544 5677888888888777
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-----CchHhHhhhccc
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-----HDVAPLCSSLRN 505 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-----~~~~p~~~~L~~ 505 (592)
++.+|...+.++..++..+|..+ +...++|.+..+..++. .+|+-|+|..+-++..... +.+.|....|..
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~v--anVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPV--ANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS 645 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCc--hhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc
Confidence 89999999999999999998765 56778888888877665 7999999999999886532 234555555544
No 50
>KOG1240|consensus
Probab=98.75 E-value=1.3e-06 Score=97.16 Aligned_cols=299 Identities=18% Similarity=0.159 Sum_probs=178.7
Q ss_pred HHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCC--
Q psy9904 98 LLPILKETLFH-HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH-- 174 (592)
Q Consensus 98 ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~-- 174 (592)
+++.+..++++ ....-|.+|+..|..++....+. .-++.++|+++.++.|+.+.||..|..||.++-..+.+-..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 45555555554 23456788888888888766543 45899999999999999999999999999988765543110
Q ss_pred ccchHHHHHHHHccccCCccchhhhHHHHHHhcCc-hhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSD-KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 175 ~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d-~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
...|+ +-|.|.|..++.| ....||..-+..|..+|+..- +|...-++.++ .-+++
T Consensus 501 aniF~-----------------eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~-~g~~n 556 (1431)
T KOG1240|consen 501 ANIFP-----------------EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQ-AGMLN 556 (1431)
T ss_pred chhhH-----------------hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHh-ccccc
Confidence 00010 3455666666666 455566554444454443210 01000000000 00000
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhh-cccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNI-LKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLN 331 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~-~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~ 331 (592)
... .+..++... ..++..|....-+.... +.|+++-+ ..++|.|..++.-+|+.=..- -+++.|..+|.
T Consensus 557 ~~n--set~~~~~~-~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND------~iLshLiTfLN 627 (1431)
T KOG1240|consen 557 DPN--SETAPEQNY-NTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND------VILSHLITFLN 627 (1431)
T ss_pred Ccc--ccccccccc-chHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc------chHHHHHHHhc
Confidence 000 001111111 13444444333333222 23444333 578888888888888743221 12445555552
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh-hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH-IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS 410 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~-~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~ 410 (592)
+.|..+|...+|.|.+++--+|.. ...|+ +|++.+.+.|..+-|-.+|+.++.-|++.--
T Consensus 628 -------------DkDw~LR~aFfdsI~gvsi~VG~rs~seyl-----lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l- 688 (1431)
T KOG1240|consen 628 -------------DKDWRLRGAFFDSIVGVSIFVGWRSVSEYL-----LPLLQQGLTDGEEAVIVSALGSLSILIKLGL- 688 (1431)
T ss_pred -------------CccHHHHHHHHhhccceEEEEeeeeHHHHH-----HHHHHHhccCcchhhHHHHHHHHHHHHHhcc-
Confidence 235678889999999998888865 55554 8999999999999999999999999987531
Q ss_pred hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 411 HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 411 ~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
-=++++-+++...+-.|-.++.=+|..++..+..++..++
T Consensus 689 l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 689 LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 1123344444444434444666799999999999888876
No 51
>KOG1062|consensus
Probab=98.73 E-value=2e-05 Score=84.88 Aligned_cols=310 Identities=18% Similarity=0.250 Sum_probs=149.0
Q ss_pred HHHHHhhh--c--hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHH
Q psy9904 83 LDVLANVF--R--EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAIT 158 (592)
Q Consensus 83 L~~la~~~--~--~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a 158 (592)
+|.||-.+ . .+++--+...|++=++|.+-.+--.|+-+||.|+ +.. ..+.+.|-+.+.|+.++|.||.-|
T Consensus 89 iGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~---s~E---mardlapeVe~Ll~~~~~~irKKA 162 (866)
T KOG1062|consen 89 IGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC---SPE---MARDLAPEVERLLQHRDPYIRKKA 162 (866)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC---CHH---HhHHhhHHHHHHHhCCCHHHHHHH
Confidence 55555543 2 2566666777777777877666555555555554 332 346788888888888999999999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHHHHHccccCCc--c--ch--------hhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 159 CWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMV--P--HL--------NELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 159 ~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~v--q--~l--------~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
..|+-++-.-.++ -.+-|+++- ..++..-+.-| . ++ ++.+.|+..+. ..+|+..---+.++|.
T Consensus 163 ~Lca~r~irK~P~-l~e~f~~~~-~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~---~~lV~iLk~l~~~~ys 237 (866)
T KOG1062|consen 163 ALCAVRFIRKVPD-LVEHFVIAF-RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV---PSLVKILKQLTNSGYS 237 (866)
T ss_pred HHHHHHHHHcCch-HHHHhhHHH-HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH---HHHHHHHHHHhcCCCC
Confidence 9998888764432 111122222 22221111101 0 00 22333444433 3333332111113331
Q ss_pred hhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc--hHHHHHHHHHH
Q psy9904 227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL--FPLLECLSSVA 304 (592)
Q Consensus 227 ~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~--~~~~e~l~~ia 304 (592)
... ....-.+|.++ .+- +..+ ...|..- +-...+|.-++...-.-.|.+++. .-++||+..|-
T Consensus 238 pey---dv~gi~dPFLQ-i~i----LrlL----riLGq~d---~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~ 302 (866)
T KOG1062|consen 238 PEY---DVHGISDPFLQ-IRI----LRLL----RILGQND---ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIM 302 (866)
T ss_pred Ccc---CccCCCchHHH-HHH----HHHH----HHhcCCC---ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 100 00111222222 111 1111 1223321 223344443333211112344443 45677766654
Q ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH
Q psy9904 305 TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ 384 (592)
Q Consensus 305 ~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~ 384 (592)
.-.... ..-...+++|.++|.. .|..++=.+++.|..+++.=....+ +--..++.
T Consensus 303 ~I~~~~------~LrvlainiLgkFL~n-------------~d~NirYvaLn~L~r~V~~d~~avq------rHr~tIle 357 (866)
T KOG1062|consen 303 DIRSNS------GLRVLAINILGKFLLN-------------RDNNIRYVALNMLLRVVQQDPTAVQ------RHRSTILE 357 (866)
T ss_pred hccCCc------hHHHHHHHHHHHHhcC-------------CccceeeeehhhHHhhhcCCcHHHH------HHHHHHHH
Confidence 432221 1111234555555532 1333344556555555543222222 22357889
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc
Q psy9904 385 CMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKL 449 (592)
Q Consensus 385 ~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~ 449 (592)
|++|++..+|+.|+.+.-.|... ..+...+..++..|-+ .+..++......+-+++...
T Consensus 358 CL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~----~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLES----SDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998777652 2333333333333333 34456666666666665544
No 52
>KOG1943|consensus
Probab=98.71 E-value=3.9e-05 Score=85.25 Aligned_cols=359 Identities=16% Similarity=0.172 Sum_probs=181.5
Q ss_pred ccchHHHHHHHHHHHHHhhhchh----hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHh-hchhchhhhHhhHHHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFREE----LLPVLLPILKETLFHHDWEIKESGILALGAIAE-GCMNGMVPHLNELVPFLIT 145 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~----vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iae-g~~~~i~~~l~~lvp~l~~ 145 (592)
.+..+|-+||+.+++++..+|.. ++..++.++...=.+..| +.|++||+.+|. |.-. -.-++.++|.+++
T Consensus 353 ~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aW---HgacLaLAELA~rGlLl--ps~l~dVvplI~k 427 (1133)
T KOG1943|consen 353 TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAW---HGACLALAELALRGLLL--PSLLEDVVPLILK 427 (1133)
T ss_pred CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHH---HHHHHHHHHHHhcCCcc--hHHHHHHHHHHHH
Confidence 34567778899999999988854 444444422211123446 499999999985 3221 1247889999999
Q ss_pred hccCCh--------HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHH
Q psy9904 146 CLSDKK--------ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAI 217 (592)
Q Consensus 146 ~L~D~~--------~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~ 217 (592)
.|.=.+ ..||.+||+.+=+|+..-.+....+++..+...|+ ...+-|++-..|..
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL-----------------~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL-----------------IVALFDREVNCRRA 490 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH-----------------HHHhcCchhhHhHH
Confidence 886332 46999998777666655443333334433333332 23456777778888
Q ss_pred HHhhhhhhhhhhccCCcccchHHHHH-----hhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc
Q psy9904 218 TCWTLSRYSHWVVSQPHDSYLKPLMT-----EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD 292 (592)
Q Consensus 218 a~~~L~~~a~~~~~~~~~~y~~~~~~-----~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~ 292 (592)
|..++.-. +|-+.--|+=.+++. ...++. .|...++..+. ++ +.|...++.+|+.. .+ .+.+
T Consensus 491 AsAAlqE~---VGR~~n~p~Gi~Lis~~dy~sV~~rs---Ncy~~l~~~ia-~~--~~y~~~~f~~L~t~--Kv--~HWd 557 (1133)
T KOG1943|consen 491 ASAALQEN---VGRQGNFPHGISLISTIDYFSVTNRS---NCYLDLCVSIA-EF--SGYREPVFNHLLTK--KV--CHWD 557 (1133)
T ss_pred HHHHHHHH---hccCCCCCCchhhhhhcchhhhhhhh---hHHHHHhHHHH-hh--hhHHHHHHHHHHhc--cc--cccc
Confidence 77776532 222111111111111 111111 22333333331 22 26778888887753 11 1111
Q ss_pred ---chHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh
Q psy9904 293 ---LFPLLECLSSVATALQAGFLP-YCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH 368 (592)
Q Consensus 293 ---~~~~~e~l~~ia~~~g~~f~p-y~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~ 368 (592)
...+-.||..+.....+.+.. |++ ++|...+ ..+...+....-..+.++.++...
T Consensus 558 ~~irelaa~aL~~Ls~~~pk~~a~~~L~-------~lld~~l--------------s~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPKYLADYVLP-------PLLDSTL--------------SKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhcccchh-------hhhhhhc--------------CCChHHhhhhHHHHHHHHHHhhhh
Confidence 245666777777666555543 333 3333322 123444444444445554443221
Q ss_pred h--HhhhccC------chHHH-HHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhh-hhhHHHHHHhccCCCChhHHHH
Q psy9904 369 I--DSLVSNS------NIMHL-LYQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPC-ISDFMPILGQNLNPDLISVCNN 437 (592)
Q Consensus 369 ~--~~~~~~~------~l~~~-l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~-l~~llp~l~~~l~~~~~~v~~~ 437 (592)
- .+++.+. .+.+. ....+.-. ..-+|++....+-.+.-.-...+..+ ...+...+.+++...+ .+|+.
T Consensus 617 ~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~ 695 (1133)
T KOG1943|consen 617 EPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDA 695 (1133)
T ss_pred hhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHH
Confidence 1 1111000 01111 11111110 12345555555554443322222222 2345566666675555 89999
Q ss_pred HHHHHHHHHHhcC--chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 438 ATWAIGEISVKLG--EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 438 A~~~Lg~ia~~~~--~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
|.|++|+++...- ++.... .++...+.-+.++. ...++.....++|.+-
T Consensus 696 av~av~~l~s~y~~~d~~~~~--~li~~~ls~~~~~~-~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 696 AVSAVSDLVSTYVKADEGEEA--PLITRYLSRLTKCS-EERIRRGLILALGVLP 746 (1133)
T ss_pred HHHHHHHHHHHHHhcCchhhh--HHHHHHHHHhcCch-HHHHHHHHHHHHccCc
Confidence 9999999985532 211111 35555555555542 2455556666666654
No 53
>KOG4224|consensus
Probab=98.71 E-value=1.5e-06 Score=85.19 Aligned_cols=310 Identities=16% Similarity=0.144 Sum_probs=183.5
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHH
Q psy9904 105 TLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184 (592)
Q Consensus 105 ~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~ 184 (592)
.-++.+-++|.-+.-+|..+...-..-=.-....-+|+++..++..++.||+.+|.+++.++-.-.. .+.
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~---Rk~------- 244 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA---RKI------- 244 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH---HHH-------
Confidence 3345555666666655555442211100001245689999999999999999999999999853211 100
Q ss_pred HHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcc
Q psy9904 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGH 264 (592)
Q Consensus 185 Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~ 264 (592)
-+|+=+.++|-|..++.|....+++.|..+|++++.. ..|..++.+ .
T Consensus 245 -------Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd------t~Yq~eiv~--------------------a 291 (550)
T KOG4224|consen 245 -------LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD------TEYQREIVE--------------------A 291 (550)
T ss_pred -------HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc------chhhhHHHh--------------------c
Confidence 1223367899999999999999999999999887531 122222211 0
Q ss_pred cCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhcc----ccccHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 265 HLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGF----LPYCEPVYRRCVSLIEQTLNQHMANSQNP 340 (592)
Q Consensus 265 ~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f----~py~~~v~~~~~~~l~~~l~~~~~~~~~~ 340 (592)
.-+|.+++.++. +--+.+..-.-|+..++-+-+.+. ..|+.+. +.++...
T Consensus 292 ---------g~lP~lv~Llqs--~~~plilasVaCIrnisihplNe~lI~dagfl~pL----VrlL~~~----------- 345 (550)
T KOG4224|consen 292 ---------GSLPLLVELLQS--PMGPLILASVACIRNISIHPLNEVLIADAGFLRPL----VRLLRAG----------- 345 (550)
T ss_pred ---------CCchHHHHHHhC--cchhHHHHHHHHHhhcccccCcccceecccchhHH----HHHHhcC-----------
Confidence 013444443321 111222344556666655544321 1133332 2332210
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hh
Q psy9904 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SD 418 (592)
Q Consensus 341 ~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~ 418 (592)
+..+..-.+.+.+-.++......-..+.+ +.-++.+...+.|..-++|...-++++.++-. +.++.++ ..
T Consensus 346 -----dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~g 417 (550)
T KOG4224|consen 346 -----DNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSG 417 (550)
T ss_pred -----CchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcC
Confidence 11234556778888887755444333333 55678888888888889998888888887743 2233333 25
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc------hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 419 FMPILGQNLNPDLISVCNNATWAIGEISVKLGE------DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 419 llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~------~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
++|.++.-..+++.+|+.||..+|+.++..... ....-++.+-..|...+.+.+ ..++.-+.|||-.+...+
T Consensus 418 i~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~--~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 418 IIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE--LTFRHIARWTIQQLLEDH 495 (550)
T ss_pred CcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHhC
Confidence 888888888899999999999999998754321 111112344455555555433 445556677777777655
Q ss_pred C
Q psy9904 493 P 493 (592)
Q Consensus 493 ~ 493 (592)
.
T Consensus 496 ~ 496 (550)
T KOG4224|consen 496 D 496 (550)
T ss_pred C
Confidence 3
No 54
>KOG1060|consensus
Probab=98.67 E-value=1.2e-05 Score=86.18 Aligned_cols=397 Identities=17% Similarity=0.197 Sum_probs=221.9
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+--.+.|--+.++.+|.+.. +..++|.+..+..+++..+|+-.-.-|=+.||.-++... --+..+-+.|+||+
T Consensus 49 d~~KleAmKRIia~iA~G~d---vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSIntfQk~L~DpN 121 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGKD---VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSINTFQKALKDPN 121 (968)
T ss_pred cHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeHHHHHhhhcCCc
Confidence 33455555677788887655 566778788888999999999999999999997665211 12456788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCcc----------------chhhhHHHHHHhcCchhhHHH
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP----------------HLNELVPFLITCLSDKKALVR 215 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq----------------~l~~l~p~l~~il~d~~~~vr 215 (592)
+.+|..|..+|+.+--.. ..+..--.+......+.+.|. .-++|+..+..+|.|..+.|-
T Consensus 122 ~LiRasALRvlSsIRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred HHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcch
Confidence 999999888888654321 112222222222233333332 116888899999999988886
Q ss_pred HHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH------------HHHHHHHHhcccCCChhhHhhhhHH-----
Q psy9904 216 AITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD------------AIGTLADSVGHHLNKPEYISLLMPP----- 278 (592)
Q Consensus 216 ~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d------------ai~~la~~~g~~~~~~~y~~~lmp~----- 278 (592)
..|..++...+. +.. .++ ++|.+.++. .|+++..-+...+..|.........
T Consensus 198 gsAv~AF~evCP----erl-----dLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~ 266 (968)
T KOG1060|consen 198 GSAVMAFEEVCP----ERL-----DLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSC 266 (968)
T ss_pred hHHHHHHHHhch----hHH-----HHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccc
Confidence 666555543321 100 011 123222211 2333333333333322110000000
Q ss_pred -HHHHHhhcc---cCCccchHHHHHHHH--------HHHHHhhccccccHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy9904 279 -LIQKWNILK---DEDKDLFPLLECLSS--------VATALQAGFLPYCEP-VYRRCVSLIEQTLNQHMANSQNPEQFDA 345 (592)
Q Consensus 279 -L~~~~~~~~---d~~~~~~~~~e~l~~--------ia~~~g~~f~py~~~-v~~~~~~~l~~~l~~~~~~~~~~~~~~~ 345 (592)
+....+... -.++++.-+++|... +..+.-..|-..+++ -+..+.+.|...|..
T Consensus 267 ~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs------------- 333 (968)
T KOG1060|consen 267 NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS------------- 333 (968)
T ss_pred cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-------------
Confidence 000000000 012333333443222 222222212111221 112223333333321
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHh
Q psy9904 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQ 425 (592)
Q Consensus 346 ~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~ 425 (592)
.++.+-..+..|..++.....-|.||+. .++ -+- .+...++.-=+..|+.|+.. .-+..|++.+..
T Consensus 334 -~~~vqyvvL~nIa~~s~~~~~lF~P~lK--sFf----v~s-sDp~~vk~lKleiLs~La~e------sni~~ILrE~q~ 399 (968)
T KOG1060|consen 334 -NREVQYVVLQNIATISIKRPTLFEPHLK--SFF----VRS-SDPTQVKILKLEILSNLANE------SNISEILRELQT 399 (968)
T ss_pred -CCcchhhhHHHHHHHHhcchhhhhhhhh--ceE----eec-CCHHHHHHHHHHHHHHHhhh------ccHHHHHHHHHH
Confidence 1233446788888888887777999883 222 111 22345566666777777753 345677788877
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhhccc
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRN 505 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L~~ 505 (592)
.+.+.+.++...|+.++|..|...+. .-+..+..|+.++++.+ ..|...+...|.+|....|..-..++..|..
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshd--e~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ 473 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHD--ELVVAEAVVVIKRLLQKDPAEHLEILFQLAR 473 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhccc--chhHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 78777778999999999999876653 45678888888888765 6788888899999998887654445555555
Q ss_pred CCCchHhHHHHHHHHHHH
Q psy9904 506 IRDNEEKDSAFRGMCAMI 523 (592)
Q Consensus 506 ~~d~~Ek~~a~~~l~~li 523 (592)
+.|+.+-..|--++..|+
T Consensus 474 lldti~vp~ARA~IiWLi 491 (968)
T KOG1060|consen 474 LLDTILVPAARAGIIWLI 491 (968)
T ss_pred Hhhhhhhhhhhceeeeee
Confidence 445544333333444333
No 55
>KOG2274|consensus
Probab=98.64 E-value=0.00012 Score=79.88 Aligned_cols=384 Identities=13% Similarity=0.158 Sum_probs=213.1
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhh---------cCC-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETL---------FHH-DWEIKESGILALGAIAEGCMNGMVPHLNELVPF 142 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l---------~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~ 142 (592)
.+.|.++...+-.++..+|..-+.++.+.....+ +.+ .|...++-+.+......+-. .-.++..+..+
T Consensus 376 ~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~ 453 (1005)
T KOG2274|consen 376 YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIM 453 (1005)
T ss_pred chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHH
Confidence 4566666677777778888654444444432222 233 47788888888777774422 22456667767
Q ss_pred HHHhccCC-hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhh
Q psy9904 143 LITCLSDK-KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT 221 (592)
Q Consensus 143 l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~ 221 (592)
+...|..+ .|..-..+.|+++.|++...- ..+.+...+...++.+ ..|..+.++..|+.+
T Consensus 454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~--~~~~~~~fl~~~v~~l-----------------~~~~~~~~ki~a~~~ 514 (1005)
T KOG2274|consen 454 IDNGLVYQESPFLLLRAFLTISKFSSSTVI--NPQLLQHFLNATVNAL-----------------TMDVPPPVKISAVRA 514 (1005)
T ss_pred HHhhcccccCHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhh-----------------ccCCCCchhHHHHHH
Confidence 77766543 355555899999999886431 2333444444433333 123345555666665
Q ss_pred hhhhhhhhccCCcccchHHHHHhh------hhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-h
Q psy9904 222 LSRYSHWVVSQPHDSYLKPLMTEH------KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-F 294 (592)
Q Consensus 222 L~~~a~~~~~~~~~~y~~~~~~~~------~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~ 294 (592)
+..|++.-.-..+.|-+...+.+. ..+..+.++++.++. +.+++.. .-=..|.|..+..+-..+ +++.+ .
T Consensus 515 ~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~a-s~~skI~P~~i~lF~k~s-~DP~V~~ 591 (1005)
T KOG2274|consen 515 FCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAA-SMESKICPLTINLFLKYS-EDPQVAS 591 (1005)
T ss_pred HHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhh-hhhcchhHHHHHHHHHhc-CCchHHH
Confidence 555542211122333333322221 223345566654432 3333320 112345566666654432 34443 3
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhc
Q psy9904 295 PLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374 (592)
Q Consensus 295 ~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~ 374 (592)
.+.+|+..+... .....||.+..+| .+...+... +. . .+ ......++|.|.+++++........+-
T Consensus 592 ~~qd~f~el~q~-~~~~g~m~e~~iP----slisil~~~-----~~-~--~~-~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 592 LAQDLFEELLQI-AANYGPMQERLIP----SLISVLQLN-----AD-K--AP-AGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHHHHHHHHH-HHhhcchHHHHHH----HHHHHHcCc-----cc-c--cC-chhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 344555555442 2334555554443 333333221 00 0 00 234567999999999988765432221
Q ss_pred cCchHHHHHHHh-CCCChHHHHHHHHHHHHHHHHchhhhhhh-------hhhHHHHHHhccCCCChh-HHHHHHHHHHHH
Q psy9904 375 NSNIMHLLYQCM-QDPMPEVRQSSFALLGDLTKACFSHVHPC-------ISDFMPILGQNLNPDLIS-VCNNATWAIGEI 445 (592)
Q Consensus 375 ~~~l~~~l~~~l-~~~~~~vR~~a~~~l~~la~~~~~~~~~~-------l~~llp~l~~~l~~~~~~-v~~~A~~~Lg~i 445 (592)
...+|.+.+|. ...+...-|.+=.+|..+.....+++..+ +..+|..+-+.|+++..+ .+-.+--.+-.+
T Consensus 658 -~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tL 736 (1005)
T KOG2274|consen 658 -CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTL 736 (1005)
T ss_pred -HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHH
Confidence 34577777775 34567788888888887776644433221 335777777777665332 222222233345
Q ss_pred HHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCch
Q psy9904 446 SVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDV 496 (592)
Q Consensus 446 a~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~ 496 (592)
..+.|..+.|-+.+|+..++..++.-+ ..++..|.+..+..+..+.++.+
T Consensus 737 it~a~~el~~n~d~IL~Avisrmq~ae-~lsviQsLi~VfahL~~t~~~~~ 786 (1005)
T KOG2274|consen 737 ITHASSELGPNLDQILRAVISRLQQAE-TLSVIQSLIMVFAHLVHTDLDQL 786 (1005)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhhCCHHHH
Confidence 566778889999999998888887644 36777888888888876655443
No 56
>KOG1991|consensus
Probab=98.61 E-value=0.0016 Score=72.25 Aligned_cols=395 Identities=15% Similarity=0.185 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHH-HhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-----------hchhhhHhhHHHH
Q psy9904 75 LRKCSAAALDVL-ANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-----------NGMVPHLNELVPF 142 (592)
Q Consensus 75 ~Rk~aa~~L~~l-a~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-----------~~i~~~l~~lvp~ 142 (592)
+|-.=..||..+ ...+| +-||.+++.+..++++++-.+-.+|+++|-+++..-. ..+...+|.|+..
T Consensus 105 iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~ 183 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI 183 (1010)
T ss_pred HHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 343334455333 23344 6689999999999999998899999999999986532 2344556667777
Q ss_pred HHHhccCChHH---HHHHHHHHHHHHHHHhhcC--CCccchHHHHHHHHccccCCcc----c------------------
Q psy9904 143 LITCLSDKKAL---VRAITCWTLSRYSHWVVSQ--PHDSYLKPLMTEMLGCMNGMVP----H------------------ 195 (592)
Q Consensus 143 l~~~L~D~~~~---VR~~a~~aL~~l~~~~~~~--~~~~~l~~ll~~Ll~~l~~~vq----~------------------ 195 (592)
..+.+.+++-. .....|...-.++-.--|. ...+.|.+-|...+.-+++-|. .
T Consensus 184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa 263 (1010)
T KOG1991|consen 184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA 263 (1010)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence 77777777533 2333333333333221111 1233444444444433322111 0
Q ss_pred hhhhHHHHHHhcCchh---hHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhh-----HHHHHHHHHHHHHHhcccC-
Q psy9904 196 LNELVPFLITCLSDKK---ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKN-----LLILYDAIGTLADSVGHHL- 266 (592)
Q Consensus 196 l~~l~p~l~~il~d~~---~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~-----l~~~~dai~~la~~~g~~~- 266 (592)
+..+.-.+.+.- ++. ..-+.++-+.+.+|+..+- .-+...+.+.++ -+.++.++.-+..++.+..
T Consensus 264 ~~~L~Rlf~Ryg-~~~~~~~~y~~Fa~~f~~n~~~~il-----e~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~t 337 (1010)
T KOG1991|consen 264 LHILNRLFERYG-SPSLVVPEYKEFAQMFLKNFAQGIL-----EVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAST 337 (1010)
T ss_pred HHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHH
Confidence 000000000000 000 0011111111111111000 000011111222 1356666666666655431
Q ss_pred ---CChhhHhhhhHHHHHHHhhcccC-------Ccc----------------chHHHHHHHHHHHHHhhccccccHHHHH
Q psy9904 267 ---NKPEYISLLMPPLIQKWNILKDE-------DKD----------------LFPLLECLSSVATALQAGFLPYCEPVYR 320 (592)
Q Consensus 267 ---~~~~y~~~lmp~L~~~~~~~~d~-------~~~----------------~~~~~e~l~~ia~~~g~~f~py~~~v~~ 320 (592)
.+ |+++.++...+=-+-..+|+ |+. ..++..++-.+++.=|++- +++++
T Consensus 338 wkll~-PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~---l~k~l- 412 (1010)
T KOG1991|consen 338 WKLLK-PHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET---LPKIL- 412 (1010)
T ss_pred HHHhh-hHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh---hhhHH-
Confidence 11 33333332221101111121 111 1245667777777766654 23343
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCChhH--HHHHHHHHHHHHhhhhhhhHhhhcc--CchHHHHHHHhCCCChHHHHH
Q psy9904 321 RCVSLIEQTLNQHMANSQNPEQFDAPDKDF--MIVALDLLSGLAEGLDMHIDSLVSN--SNIMHLLYQCMQDPMPEVRQS 396 (592)
Q Consensus 321 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~--~~~ald~l~~l~~~lg~~~~~~~~~--~~l~~~l~~~l~~~~~~vR~~ 396 (592)
+.+...+..... ++ .+.+.. ...|+.++++++..+.+. .||-.+ .-+.+.+.-.++++.--+|..
T Consensus 413 ---~F~~~Il~~~~~---~~----~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrar 481 (1010)
T KOG1991|consen 413 ---SFIVDILTRYKE---AS----PPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRAR 481 (1010)
T ss_pred ---HHHHHHHHhhcc---cC----CCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence 333444433211 11 111222 257889999999877543 122100 124556666777888889999
Q ss_pred HHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcC---chhhhhHHHHHHHHHHHHcCCC
Q psy9904 397 SFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLG---EDMRRYVPMVINQLIIIINRPN 472 (592)
Q Consensus 397 a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~---~~~~p~~~~il~~L~~~l~~~~ 472 (592)
|+.+++.++..-.++ ..-+.+.+....+++. +..-.|+-.|+.||.-+..+.. +.++++++.+++.|+.+.+.-+
T Consensus 482 ac~vl~~~~~~df~d-~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKD-PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHHHHHHhccCCC-hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 999999988433222 1235567777778876 7788899999999999887665 5599999999999999987543
Q ss_pred CCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 473 TPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 473 ~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
... ...++-.+....+++++|
T Consensus 561 --nd~---Lt~vme~iV~~fseElsP 581 (1010)
T KOG1991|consen 561 --NDD---LTNVMEKIVCKFSEELSP 581 (1010)
T ss_pred --hhH---HHHHHHHHHHHHHHhhch
Confidence 122 234555566666777766
No 57
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.55 E-value=8.1e-05 Score=78.55 Aligned_cols=302 Identities=14% Similarity=0.196 Sum_probs=185.8
Q ss_pred hhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChh
Q psy9904 270 EYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKD 349 (592)
Q Consensus 270 ~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~ 349 (592)
|+++.++..|+..++. ..+.+-.-++.|+-.+...++++..|+...+++++..++.... .|| .+..
T Consensus 22 p~~~~ll~~Lf~~i~~--~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~-------kNP-----snP~ 87 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEK--PGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS-------KNP-----SNPR 87 (435)
T ss_dssp CCHHHHHHHHHHHHHT--T-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH-------TS--------HH
T ss_pred hhHHHHHHHHHHHHhc--CCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------hCC-----CCcc
Confidence 7888888888887653 2223335689999999999999999999988877777665542 344 2456
Q ss_pred HHHHHHHHHHHHHhhhhhh-h--HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch-hhhhhhhhhHHHHHHh
Q psy9904 350 FMIVALDLLSGLAEGLDMH-I--DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF-SHVHPCISDFMPILGQ 425 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~-~--~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~-~~~~~~l~~llp~l~~ 425 (592)
|-...++.++.+++...+. - ..-++ ..++|.+...|+.+-.+.--.+|.+++.+.+..+ +.+-+....++|.++.
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E-~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~ 166 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFE-EALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS 166 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHH-HHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC
Confidence 7677889999998875531 1 11121 4578888888887777777888888888887766 3333333334444432
Q ss_pred c---------------cC------------CCC-h---h----------HHHHHHHHHHHHHHhcCc-hhhhhHHHHHHH
Q psy9904 426 N---------------LN------------PDL-I---S----------VCNNATWAIGEISVKLGE-DMRRYVPMVINQ 463 (592)
Q Consensus 426 ~---------------l~------------~~~-~---~----------v~~~A~~~Lg~ia~~~~~-~~~p~~~~il~~ 463 (592)
- |. ... . . --..+...|..+..+++. .+.||++.++..
T Consensus 167 p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~l 246 (435)
T PF03378_consen 167 PALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTL 246 (435)
T ss_dssp GGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHH
T ss_pred cchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 1 10 000 0 0 113577788888888885 589999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHhhhhC-CC------------chHh-----HhhhcccCCCchHhHHHHHHHHHHHhh
Q psy9904 464 LIIIINRPNTPKTLLENTAITIGRLGYVC-PH------------DVAP-----LCSSLRNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 464 L~~~l~~~~~~~~v~~na~~~lgrl~~~~-~~------------~~~p-----~~~~L~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
+...|++..+. ..+...+..++.++... |+ .+.. |+..+.++....||..+.-|+++++..
T Consensus 247 ll~RLq~skT~-kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 247 LLTRLQSSKTE-KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHC--H-HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhCCcH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 99999876542 23333334444443322 22 1111 777888887778999999999999965
Q ss_pred Cchhhhh---hHHHHHHHhh--------------------------ccC--------------CC---chhHHHHHHHHH
Q psy9904 526 NPGGVVQ---EFIFFCDAVA--------------------------SWS--------------TP---KEDLKEMFHKIL 559 (592)
Q Consensus 526 ~p~~~~~---~~~~~~~~i~--------------------------~~~--------------~~---~~~~~~~~~~ll 559 (592)
++..... .++..+.++. .|. +| -.+.+.-+.+-|
T Consensus 326 s~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~~~~~~L 405 (435)
T PF03378_consen 326 SPAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQYLAQSL 405 (435)
T ss_dssp STTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG------S-TTTTCHHHHHHHHH
T ss_pred cHhhhhHHHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCCCCCCCCCCCCCCHHHHHHHHH
Confidence 5532211 2222222111 010 00 023556677778
Q ss_pred HHHHhccChhhHHHHHhc-CCHHHHHHHHH
Q psy9904 560 HGFRTQVGDENWQRFADQ-FPDQLRDRLSA 588 (592)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~-l~~~~~~~l~~ 588 (592)
+.+.+..|. .+.+++++ |+|+.++.|++
T Consensus 406 ~~~~~~~~G-~~~~~i~~~l~~~~~~~L~~ 434 (435)
T PF03378_consen 406 SKLSQAHPG-KIPPLIQQQLPPEAQQALQQ 434 (435)
T ss_dssp HHHHHHTTS-SHHHHHGGGS-HHHHHHHHH
T ss_pred HHHHHhCCC-chHHHHHhhCCHHHHHHhcc
Confidence 888877774 79999988 99999999875
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.50 E-value=7.4e-07 Score=76.70 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHh-hHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN-ELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDS 176 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~-~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~ 176 (592)
+++.+.+.+++.+|..|+.++.+|+.++.+..+.....+. .++|.+++.|+|++++||..++|+|++++.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~----- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED----- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-----
Confidence 4566666678888999999999999999876544444444 8999999999999999999999999999864311
Q ss_pred chHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 177 YLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 177 ~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.... +.+ ..++|.+..++++.+..++..++++|.++
T Consensus 83 ~~~~----~~~---------~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLI----VLE---------AGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHH----HHH---------CCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0000 101 34677777778777777888888887764
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.49 E-value=0.0002 Score=75.97 Aligned_cols=344 Identities=15% Similarity=0.130 Sum_probs=188.4
Q ss_pred HHHHHHHhhhc-hhhhHhHHH----HHHHhhcC-CChhHHHHHHHHHHHHHhhchhch-----hhhHhh-HHHHHHHhcc
Q psy9904 81 AALDVLANVFR-EELLPVLLP----ILKETLFH-HDWEIKESGILALGAIAEGCMNGM-----VPHLNE-LVPFLITCLS 148 (592)
Q Consensus 81 ~~L~~la~~~~-~~vl~~ll~----~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~i-----~~~l~~-lvp~l~~~L~ 148 (592)
.+|..|+..+. ..++..+.+ .+...+++ .+..+-++.+.+|..+.+.+.... ..|... ++|.+.+...
T Consensus 21 ~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~ 100 (415)
T PF12460_consen 21 RILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELAL 100 (415)
T ss_pred HHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHH
Confidence 46666666554 344544444 44444432 356677888888888888765332 334443 7777766553
Q ss_pred C-----Ch--HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-cCCcc--------chhhhHHHHHHhcCchhh
Q psy9904 149 D-----KK--ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-NGMVP--------HLNELVPFLITCLSDKKA 212 (592)
Q Consensus 149 D-----~~--~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-~~~vq--------~l~~l~p~l~~il~d~~~ 212 (592)
. .+ +.+-..+...++.+...+..+.+++.+..+....+..- ...++ .-..+++.+..++
T Consensus 101 ~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il----- 175 (415)
T PF12460_consen 101 QASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAIL----- 175 (415)
T ss_pred hhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHH-----
Confidence 2 12 45555555555555555544334444554444443100 00000 0011111111111
Q ss_pred HHHHHHHhhhhhhhhhhccCCcccchHHHHHhh----------hhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHH
Q psy9904 213 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEH----------KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQK 282 (592)
Q Consensus 213 ~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~----------~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~ 282 (592)
..+- ++-.-|+....++.. ........+++.++.....+ +.++.++..+...
T Consensus 176 ----------~~l~----~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~----~~l~~~l~~~~~~ 237 (415)
T PF12460_consen 176 ----------CSLR----KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD----DDLDEFLDSLLQS 237 (415)
T ss_pred ----------HcCC----cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHhh
Confidence 1110 000011111111110 01123344555555442222 4555666666554
Q ss_pred HhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHH
Q psy9904 283 WNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLA 362 (592)
Q Consensus 283 ~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~ 362 (592)
+.. ..........++.+.-+++++=..-.|.......+++.++.. .++...+.+.++.+.
T Consensus 238 ~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-------------------~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 238 ISS-SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS-------------------PELGQQAAKAFGILL 297 (415)
T ss_pred hcc-cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-------------------hhhHHHHHHHHhhHh
Confidence 411 112222356777777777776555455555444433332221 222233444444443
Q ss_pred hhh--------hhhhHhhhcc---CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-hhhhhhhhHHHHHHhccCCC
Q psy9904 363 EGL--------DMHIDSLVSN---SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS-HVHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 363 ~~l--------g~~~~~~~~~---~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~-~~~~~l~~llp~l~~~l~~~ 430 (592)
.-. +....++..| ..++|.+++..+..+.+.|..-+..|+.+.++++. -+.++++.++|.++++|+-+
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP 377 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 1112222221 45778888888877777899999999999999976 46789999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIII 467 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~ 467 (592)
+..++.+++.++-.+....++.+.+|++.+++.|+++
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998887788999999999998764
No 60
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.46 E-value=5.5e-06 Score=80.43 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=114.0
Q ss_pred cccchHHHHHHHHHHHHHhhh-c----hhhhH---hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHH
Q psy9904 70 LSDWNLRKCSAAALDVLANVF-R----EELLP---VLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVP 141 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~-~----~~vl~---~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp 141 (592)
..+|+.|..|...|..+..+. + +.+++ .++..+...++|....+-..|+..++.++..++..+.++++.++|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 356999999999999999876 2 22222 233555667777778888999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhh
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT 221 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~ 221 (592)
.|++.+.|++..||.+|..||..+++.+. +.+.+ +.+++...+++..+.+|..++..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~-----------------~~~~l~~~~~~Kn~~vR~~~~~~ 154 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS------YSPKI-----------------LLEILSQGLKSKNPQVREECAEW 154 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HH-----------------HHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHH-----------------HHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999987654 11111 13444445556677777765544
Q ss_pred hhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhc---ccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHH
Q psy9904 222 LSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVG---HHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLL 297 (592)
Q Consensus 222 L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g---~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~ 297 (592)
+.... ...+ ..+.....++.+.+.+...+ .|.++++ ..+.
T Consensus 155 l~~~l---------------------------------~~~~~~~~~l~~~~~~~~l~~~l~~~l---~D~~~~VR~~Ar 198 (228)
T PF12348_consen 155 LAIIL---------------------------------EKWGSDSSVLQKSAFLKQLVKALVKLL---SDADPEVREAAR 198 (228)
T ss_dssp HHHHH---------------------------------TT-----GGG--HHHHHHHHHHHHHHH---TSS-HHHHHHHH
T ss_pred HHHHH---------------------------------HHccchHhhhcccchHHHHHHHHHHHC---CCCCHHHHHHHH
Confidence 43321 1122 22222234566677776643 4666664 5778
Q ss_pred HHHHHHHHHHhhc
Q psy9904 298 ECLSSVATALQAG 310 (592)
Q Consensus 298 e~l~~ia~~~g~~ 310 (592)
+|+..+....|..
T Consensus 199 ~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 199 ECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCHh
Confidence 8888888877764
No 61
>KOG1240|consensus
Probab=98.45 E-value=1.5e-05 Score=89.04 Aligned_cols=268 Identities=18% Similarity=0.248 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHhhhch-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh----chhhhHhhHHHHHHHhcc
Q psy9904 74 NLRKCSAAALDVLANVFRE-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN----GMVPHLNELVPFLITCLS 148 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~----~i~~~l~~lvp~l~~~L~ 148 (592)
.-|.+|...|..+|....+ ..+..++|++..++.|+...+|-+|+.+|..+...-.+ ...-+.+-|+|.|-.++.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 3566788888999988775 56899999999999999999999999999887754332 112234568999999999
Q ss_pred C-ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHH----HHHccccC-Ccc---------ch-hhhHHHHHHhcCchhh
Q psy9904 149 D-KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT----EMLGCMNG-MVP---------HL-NELVPFLITCLSDKKA 212 (592)
Q Consensus 149 D-~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~----~Ll~~l~~-~vq---------~l-~~l~p~l~~il~d~~~ 212 (592)
| ....||-+-+.+|+.+|.-... |+.-... ++++.+|. ..+ +| ..+-..+..++.|+.+
T Consensus 518 d~~~~~vRiayAsnla~LA~tA~r-----Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTAYR-----FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHHHH-----HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 9 6778999999999999976432 2222111 11222211 000 11 1111122223333333
Q ss_pred HHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc
Q psy9904 213 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD 292 (592)
Q Consensus 213 ~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~ 292 (592)
.|| +.++..|+.||.-.|.+-.+ +.|+++|+..++ |.++.
T Consensus 593 ~Vk---------------------------------r~Lle~i~~LC~FFGk~ksN----D~iLshLiTfLN---DkDw~ 632 (1431)
T KOG1240|consen 593 IVK---------------------------------RALLESIIPLCVFFGKEKSN----DVILSHLITFLN---DKDWR 632 (1431)
T ss_pred HHH---------------------------------HHHHHHHHHHHHHhhhcccc----cchHHHHHHHhc---CccHH
Confidence 322 34567788888888877442 566788887665 44555
Q ss_pred c-hHHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhH
Q psy9904 293 L-FPLLECLSSVATALQAG-FLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID 370 (592)
Q Consensus 293 ~-~~~~e~l~~ia~~~g~~-f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~ 370 (592)
+ .+.++.+..++.-+|.. ...| ++++|.+.|. +.+....+.++.+++.+++. |-==.
T Consensus 633 LR~aFfdsI~gvsi~VG~rs~sey-------llPLl~Q~lt-------------D~EE~Viv~aL~~ls~Lik~-~ll~K 691 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWRSVSEY-------LLPLLQQGLT-------------DGEEAVIVSALGSLSILIKL-GLLRK 691 (1431)
T ss_pred HHHHHHhhccceEEEEeeeeHHHH-------HHHHHHHhcc-------------CcchhhHHHHHHHHHHHHHh-cccch
Confidence 4 45667776666555554 2112 2455555442 22345667889999998863 11012
Q ss_pred hhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 371 SLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
+++ -++++.+.-.|-+++.=+|+.++..|..++..+.
T Consensus 692 ~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 692 PAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 344 3566666667778899999999999999987765
No 62
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.36 E-value=4.1e-07 Score=66.67 Aligned_cols=55 Identities=33% Similarity=0.580 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHH
Q psy9904 391 PEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEI 445 (592)
Q Consensus 391 ~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~i 445 (592)
+.||..|+..||.++...+..+.+|++.++|.|...++|++.+||.+|+|+||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999999999975
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.34 E-value=2.5e-06 Score=73.41 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=90.5
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
.+++.+...+.+.+..+|..++.+++.++...+.....++. .++|.+++.++++++.++..|+|+|+.++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 46788888888888999999999999999876555555555 79999999999999999999999999998755433333
Q ss_pred hHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 456 YVP-MVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 456 ~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
+.. .+++.++..++..+ ..+++.++++++.++
T Consensus 87 ~~~~g~l~~l~~~l~~~~--~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSN--EDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCC--HHHHHHHHHHHHHhh
Confidence 333 47899999998764 789999999999875
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.25 E-value=5.7e-06 Score=67.07 Aligned_cols=58 Identities=29% Similarity=0.420 Sum_probs=48.9
Q ss_pred HHHHHHhh-cCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 99 LPILKETL-FHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 99 l~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
+|.+.+.+ ++++|.+|..++.+||.+ .-+..+|.+...++|+++.||.+|+++||++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 35555666 789999999999999932 23478999999999999999999999999985
No 65
>KOG2022|consensus
Probab=98.23 E-value=0.01 Score=65.38 Aligned_cols=366 Identities=14% Similarity=0.160 Sum_probs=195.5
Q ss_pred ccccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHh-hcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHH
Q psy9904 69 SLSDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKET-LFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLI 144 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~-l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~ 144 (592)
.|..|+.-.+..-++..+++.+|. ..+|.++...-.. +.-.++..-..+...+|..+.-.++.- -|++..+|.|+
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~ 555 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLF 555 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHH
Confidence 566799999999999999999985 3445444443221 122467777888899999988776532 36889999999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
++|..++-.++. .-+|..+|+.+.. ...+|..+++...-.-+++ ++
T Consensus 556 ~~Lh~sk~s~q~--i~tl~tlC~~C~~-~L~py~d~~~a~~~e~l~~-------------------------------~~ 601 (982)
T KOG2022|consen 556 QGLHNSKESEQA--ISTLKTLCETCPE-SLDPYADQFSAVCYEVLNK-------------------------------SN 601 (982)
T ss_pred HHhcCchHHHHH--HHHHHHHHHhhhh-hCchHHHHHHHHHHHHhcc-------------------------------cc
Confidence 999876655554 3458888887754 2344444444332222111 11
Q ss_pred hhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhc-ccC----Cccc--hHHH
Q psy9904 225 YSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNIL-KDE----DKDL--FPLL 297 (592)
Q Consensus 225 ~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~-~d~----~~~~--~~~~ 297 (592)
+ ....+..++.+||-+.....++.. |.|+..|+.++++.++.. ..+ ...+ .-.+
T Consensus 602 ~------------------~~S~~~klm~sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l 662 (982)
T KOG2022|consen 602 A------------------KDSDRLKLMKSIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQL 662 (982)
T ss_pred c------------------CchHHHHHHHHHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 1 111123456677766666554432 578888888887765543 111 1111 2235
Q ss_pred HHHHHHHHHHhh------------c---cccc-cHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHH
Q psy9904 298 ECLSSVATALQA------------G---FLPY-CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGL 361 (592)
Q Consensus 298 e~l~~ia~~~g~------------~---f~py-~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l 361 (592)
.|++.++..+-. + |..+ .-.+..++++.+.+.+..... +.++.+.++-....=
T Consensus 663 ~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~-----------~s~vve~~C~i~~~~ 731 (982)
T KOG2022|consen 663 NTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLG-----------LSDVVEASCIIMVKG 731 (982)
T ss_pred HHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHhc
Confidence 677777766532 1 1111 123556667777666542210 112222111111111
Q ss_pred Hhhhhhhh-HhhhccCchHHHHHH-------------------------------------------HhC----CCChHH
Q psy9904 362 AEGLDMHI-DSLVSNSNIMHLLYQ-------------------------------------------CMQ----DPMPEV 393 (592)
Q Consensus 362 ~~~lg~~~-~~~~~~~~l~~~l~~-------------------------------------------~l~----~~~~~v 393 (592)
+..+++.| .|++ +++++.+.. .++ .+++++
T Consensus 732 v~~~~~sF~~p~l--~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di 809 (982)
T KOG2022|consen 732 VRSLLTSFPEPML--PSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDI 809 (982)
T ss_pred cccccccchhhhH--HHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchH
Confidence 22223333 3333 233333222 111 124677
Q ss_pred HHHHHHHHHHHHHHchhhhhh----hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch----hhhhHHHHHHHHH
Q psy9904 394 RQSSFALLGDLTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED----MRRYVPMVINQLI 465 (592)
Q Consensus 394 R~~a~~~l~~la~~~~~~~~~----~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~----~~p~~~~il~~L~ 465 (592)
-..-+.++..+.+..+.-+.+ |-.-+++..+..++.+.+....+|+.-+..++...+++ +...+..+-+.|+
T Consensus 810 ~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li 889 (982)
T KOG2022|consen 810 YLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILI 889 (982)
T ss_pred HHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHH
Confidence 777777887777776655444 22335556667777666655566666666677666542 3333332222222
Q ss_pred ----HHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhh
Q psy9904 466 ----IIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSS 502 (592)
Q Consensus 466 ----~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~ 502 (592)
..+.. ...|+..+..+.-++.+-..++.+..-|+..
T Consensus 890 ~~im~~vgg-~~~RS~ld~~aDIL~al~~k~~se~r~wl~~ 929 (982)
T KOG2022|consen 890 YAIMRGVGG-EASRSTLDALADILLALNAKFFSETRTWLKA 929 (982)
T ss_pred HHHHHHhcC-cCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22222 1234555555555555555555545556653
No 66
>KOG1061|consensus
Probab=98.22 E-value=0.00057 Score=74.05 Aligned_cols=373 Identities=16% Similarity=0.204 Sum_probs=192.7
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
.+|.+|.+|.+.++.+-- +.+...+..-+..+++|.++.+|.++......+-.--.+. -|-..+++.+...+.|+
T Consensus 98 ~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~--~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL--VEDSGLVDALKDLLSDS 172 (734)
T ss_pred CCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh--ccccchhHHHHHHhcCC
Confidence 469999888887665321 4667777778888899999999999988877665433332 23456888888888899
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCcc-----chhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP-----HLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq-----~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
+|.|-..|..+|..+.+.-..........+++..++..++.... .++.+.-|..+=-.+.....+..+ .++
T Consensus 173 ~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~----p~L 248 (734)
T KOG1061|consen 173 NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLT----PRL 248 (734)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh----hhh
Confidence 99999999999999887654322233444555555555532111 111111111110000000000000 000
Q ss_pred hhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHH--
Q psy9904 226 SHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSS-- 302 (592)
Q Consensus 226 a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~-- 302 (592)
-+.. + +. +|...|. .+..+-.+-+ +. ..++..+-|+|...+ +..++. +.++.-+..
T Consensus 249 qh~n-~-av------vlsavKv---~l~~~~~~~~-----~~-~~~~~K~~~pl~tll----s~~~e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 249 QHAN-S-AV------VLSAVKV---ILQLVKYLKQ-----VN-ELLFKKVAPPLVTLL----SSESEIQYVALRNINLIL 307 (734)
T ss_pred ccCC-c-ce------EeehHHH---HHHHHHHHHH-----HH-HHHHHHhcccceeee----cccchhhHHHHhhHHHHH
Confidence 0000 0 00 0000000 0000000000 00 012222223333211 111121 222222222
Q ss_pred ------HHHHHhhccccccHHHHHHHHHH--HH-----HHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhh
Q psy9904 303 ------VATALQAGFLPYCEPVYRRCVSL--IE-----QTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHI 369 (592)
Q Consensus 303 ------ia~~~g~~f~py~~~v~~~~~~~--l~-----~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~ 369 (592)
+......=|..|.+++|-...++ +. .++.+.... -.+...+.|.+|...++.+++.++-...+.
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E--l~eYatevD~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE--LKEYATEVDVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH--HHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-
Confidence 22222334666777776443321 11 111110000 000111235677777888888887666543
Q ss_pred HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC-CChhHHHHHHHHHHHHHHh
Q psy9904 370 DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP-DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~ 448 (592)
..++..++..++....-+-+.+..++-++.+.++..+ +.+++.+..+++. .+++.|.+-+|.+|+-+..
T Consensus 385 ------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 ------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred ------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 3578888888887767788899999999999888764 4455556555543 4677999999999999887
Q ss_pred cCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 449 LGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 449 ~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
+++. ..++..+++-+.++. ..|+-....+.=|+-...|
T Consensus 455 i~~a-----~elL~~f~en~~dE~--~~Vql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 455 IENA-----LELLESFLENFKDET--AEVQLELLTAAIKLFLKKP 492 (734)
T ss_pred cCcH-----HHHHHHHHhhcccch--HHHHHHHHHHHHHHHhcCC
Confidence 6542 234444444444333 4444444444444444444
No 67
>KOG4224|consensus
Probab=98.21 E-value=9.4e-05 Score=72.93 Aligned_cols=305 Identities=16% Similarity=0.167 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhhhch-hhh--HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--hhchhhhHhhHHHHHHHhccC
Q psy9904 75 LRKCSAAALDVLANVFRE-ELL--PVLLPILKETLFHHDWEIKESGILALGAIAEGC--MNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~-~vl--~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~--~~~i~~~l~~lvp~l~~~L~D 149 (592)
+|+.+..+|-.+...... .++ .--+|++...+++.+..+|+-+..|+|.|+-.- .+.+.+--|.++|.++.++.|
T Consensus 183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~ 262 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD 262 (550)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence 555566666666554442 222 335788888889999999999999999998432 234444557899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh
Q psy9904 150 KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229 (592)
Q Consensus 150 ~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~ 229 (592)
++++|+..|..+|+.++.. .+|..++++ ..-+|.+..+++++-...-...
T Consensus 263 ~s~kvkcqA~lALrnlasd------t~Yq~eiv~-------------ag~lP~lv~Llqs~~~plilas----------- 312 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLASD------TEYQREIVE-------------AGSLPLLVELLQSPMGPLILAS----------- 312 (550)
T ss_pred CChHHHHHHHHHHhhhccc------chhhhHHHh-------------cCCchHHHHHHhCcchhHHHHH-----------
Confidence 9999999999999999853 445555443 1223444444433321111110
Q ss_pred ccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHh
Q psy9904 230 VSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQ 308 (592)
Q Consensus 230 ~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g 308 (592)
.-||..++-.-+.+. ... ...+.+|...+.. .|+..-...+...|-.+|....
T Consensus 313 ----------------------VaCIrnisihplNe~---lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAasse 366 (550)
T KOG4224|consen 313 ----------------------VACIRNISIHPLNEV---LIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAASSE 366 (550)
T ss_pred ----------------------HHHHhhcccccCccc---ceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhhhh
Confidence 112222221111110 111 1123444444322 2322112456666666666544
Q ss_pred hccccccH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC
Q psy9904 309 AGFLPYCE-PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ 387 (592)
Q Consensus 309 ~~f~py~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~ 387 (592)
.....+.+ ..++.+..++. +.| -+++...--|++.++ +.+.+..++-...+++.++..+.
T Consensus 367 ~n~~~i~esgAi~kl~eL~l----------D~p-------vsvqseisac~a~La--l~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 367 HNVSVIRESGAIPKLIELLL----------DGP-------VSVQSEISACIAQLA--LNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred hhhHHHhhcCchHHHHHHHh----------cCC-------hhHHHHHHHHHHHHH--hccccHHHHhhcCCcceeecccC
Confidence 32211111 11112221111 111 233333334455443 33455555544678999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHchh------hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 388 DPMPEVRQSSFALLGDLTKACFS------HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 388 ~~~~~vR~~a~~~l~~la~~~~~------~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
+.+.+||-.|.+.|++++..... .+-.-...+-..+..-+..++..++.-|.|.+-.++......+.
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~ 500 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLT 500 (550)
T ss_pred ccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHH
Confidence 99999999999999999864321 11111133445555666677778999999999998876554333
No 68
>KOG1248|consensus
Probab=98.20 E-value=0.023 Score=64.66 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHhh-hhhhh-HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc
Q psy9904 350 FMIVALDLLSGLAEG-LDMHI-DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL 427 (592)
Q Consensus 350 ~~~~ald~l~~l~~~-lg~~~-~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l 427 (592)
.+..+.++|..+... -|+.+ ...+ ..+++.+...++......|...+.+|..|.+.++.++..+++..+|.++-++
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i--~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRI--DDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 444556666666554 12222 2233 4678888888888888999999999999999999888889999999988888
Q ss_pred CCCChhHHHHHHHHHHHHH--Hhc-Cchhhh---hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchH----
Q psy9904 428 NPDLISVCNNATWAIGEIS--VKL-GEDMRR---YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA---- 497 (592)
Q Consensus 428 ~~~~~~v~~~A~~~Lg~ia--~~~-~~~~~p---~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~---- 497 (592)
++.+...|.+|..+|-.|+ ... ...-.| .++.++..+..-+-.... .+.-..+.+++.+.....+.+.
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~--~~~as~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST--RVVASDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH--HHHHHHHHHHHHHHHHHhccccHHHH
Confidence 8888899999988888776 222 111112 444444444444433221 1221226777777765443221
Q ss_pred h-----HhhhcccCCCchH-hHHHHHHHHHHHhhCchh-hhhhHHHHHHHhhccCC-CchhHHHHHHHHHHHHHhccChh
Q psy9904 498 P-----LCSSLRNIRDNEE-KDSAFRGMCAMITVNPGG-VVQEFIFFCDAVASWST-PKEDLKEMFHKILHGFRTQVGDE 569 (592)
Q Consensus 498 p-----~~~~L~~~~d~~E-k~~a~~~l~~li~~~p~~-~~~~~~~~~~~i~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 569 (592)
+ .|..|. ....| +..|+..+-.++..-|.. +.+++..++..+..|.. -+..++....+++..+-..+|.+
T Consensus 826 ~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 826 EKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 1 222332 23334 556777777777777765 45678888888888853 45667778888888888888866
Q ss_pred hHHHHHhcCCHHHHHHHH
Q psy9904 570 NWQRFADQFPDQLRDRLS 587 (592)
Q Consensus 570 ~~~~~~~~l~~~~~~~l~ 587 (592)
....| +|.++.+.|.
T Consensus 904 eLe~~---~pee~~klL~ 918 (1176)
T KOG1248|consen 904 ELESF---LPEEDMKLLT 918 (1176)
T ss_pred HHHhh---CHHHHHHHHH
Confidence 56666 4455555544
No 69
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.021 Score=61.86 Aligned_cols=415 Identities=16% Similarity=0.159 Sum_probs=221.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcC-CCccc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ-PHDSY 177 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~-~~~~~ 177 (592)
++++...++++--..|--|+..+..+.+...+. ..+.++.....++|++.+-.|+-.|+.||..+..+.+-. ...++
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 344444456766667777888888887666642 346778888899999988899999999999887654321 13456
Q ss_pred hHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHH
Q psy9904 178 LKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGT 257 (592)
Q Consensus 178 l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~ 257 (592)
.+++|+.|+.-.|.- + .++ +-.++..
T Consensus 540 Vp~tmekLLsLSn~f------------------e-------iD~-----------------------------LS~vMe~ 565 (970)
T COG5656 540 VPETMEKLLSLSNTF------------------E-------IDP-----------------------------LSMVMES 565 (970)
T ss_pred hhHHHHHHHHhcccc------------------c-------chH-----------------------------HHHHHHH
Confidence 667776666533110 0 000 0011112
Q ss_pred HHHHhcccCCChhhHhhhhHHHHHH----HhhcccC---------Cccc--hHHHHHHHHHHHHHhh--ccccccHHHHH
Q psy9904 258 LADSVGHHLNKPEYISLLMPPLIQK----WNILKDE---------DKDL--FPLLECLSSVATALQA--GFLPYCEPVYR 320 (592)
Q Consensus 258 la~~~g~~~~~~~y~~~lmp~L~~~----~~~~~d~---------~~~~--~~~~e~l~~ia~~~g~--~f~py~~~v~~ 320 (592)
+.+...+++. ||.+.++..|.+. ...+.++ ++.. ..++.++.++..++.. ..+.|+...+
T Consensus 566 fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl- 642 (970)
T COG5656 566 FVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL- 642 (970)
T ss_pred HHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 2223333443 4555444444432 1111111 1221 2345566666665544 2233333322
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCCh-HHHHHHHH
Q psy9904 321 RCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP-EVRQSSFA 399 (592)
Q Consensus 321 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~-~vR~~a~~ 399 (592)
.+.+.-.+... -.+|..-++|.+.+..-... .+.|-. ..+++++..++.++.. .--+.+..
T Consensus 643 --ypvi~Filkn~-------------i~dfy~Ea~dildg~tf~sk-eI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~ 704 (970)
T COG5656 643 --YPVISFILKNE-------------ISDFYQEALDILDGYTFMSK-EIEPIM--WGIFELLLNLLIDEITAVYSEEVAD 704 (970)
T ss_pred --HHHHHHHHhhh-------------HHHHHHHHHHHHhhhhHHHH-Hhhhhh--hHHHHHHHhcccccchhhhHHHHHH
Confidence 33333333211 13566677888777654433 344544 5788889999987664 44555666
Q ss_pred HHHHHHHHchhhhh---hhhhhHHHHHHhccCCCCh--hHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHHHHHHcC--C
Q psy9904 400 LLGDLTKACFSHVH---PCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGE-DMRRYVPMVINQLIIIINR--P 471 (592)
Q Consensus 400 ~l~~la~~~~~~~~---~~l~~llp~l~~~l~~~~~--~v~~~A~~~Lg~ia~~~~~-~~~p~~~~il~~L~~~l~~--~ 471 (592)
++.++..+.+..|. -|..-+......++..+.. .-+..+|..+-.++.++++ -...|++.+.......+.. +
T Consensus 705 al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dE 784 (970)
T COG5656 705 ALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDE 784 (970)
T ss_pred HHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhcccc
Confidence 88888887766654 2455555566666766654 4456788888888888886 4566777555555433332 2
Q ss_pred CCCchHH--H--------HHHHHHHHhhhhC-CC-chHhHhhhcccCCCchHhHHH---HHHHHHHHh--hCchhhhhhH
Q psy9904 472 NTPKTLL--E--------NTAITIGRLGYVC-PH-DVAPLCSSLRNIRDNEEKDSA---FRGMCAMIT--VNPGGVVQEF 534 (592)
Q Consensus 472 ~~~~~v~--~--------na~~~lgrl~~~~-~~-~~~p~~~~L~~~~d~~Ek~~a---~~~l~~li~--~~p~~~~~~~ 534 (592)
.....+. + +-..|++-+-... -. .+..|....++-+.-..|.-. +-.+|.+-. .+|+-..+++
T Consensus 785 lg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ipkfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nL 864 (970)
T COG5656 785 LGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIPKFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNL 864 (970)
T ss_pred ccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCcchhhhhhhHhHHHHHHHHHHhcccccchhhhhhHH
Confidence 1111111 1 1113333332110 01 123387777776666665443 444444432 2444444444
Q ss_pred HHHHH--------Hh---h-ccCC-----Cc------h--------------------------hHHHHHHHHHHHHHhc
Q psy9904 535 IFFCD--------AV---A-SWST-----PK------E--------------------------DLKEMFHKILHGFRTQ 565 (592)
Q Consensus 535 ~~~~~--------~i---~-~~~~-----~~------~--------------------------~~~~~~~~ll~~~~~~ 565 (592)
..++- |+ + .+.. ++ + +...-|+.++.+++..
T Consensus 865 g~vlv~l~~sLPeAir~rake~d~e~f~e~dlt~ey~e~vD~~D~~etfileEDplfeT~LDqvdpf~~f~ef~~nLq~~ 944 (970)
T COG5656 865 GEVLVALVTSLPEAIRLRAKEKDDEDFPEPDLTTEYDECVDASDISETFILEEDPLFETELDQVDPFGYFSEFLSNLQPA 944 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHhhcccCCCCCcccchhhhccccccchhhhhhhcccchhhhhhhhcchHHHHHHHHHhCCCC
Confidence 33322 22 1 1110 00 0 1112355555555544
Q ss_pred cChhhHHHHHhcCCHHHHHHHHHhhC
Q psy9904 566 VGDENWQRFADQFPDQLRDRLSAMYG 591 (592)
Q Consensus 566 ~~~~~~~~~~~~l~~~~~~~l~~~~~ 591 (592)
-| ...+.+++.|.+.+|+.|+.+.+
T Consensus 945 s~-~~yekIi~~Lt~s~qdslq~iln 969 (970)
T COG5656 945 SG-TYYEKIISTLTDSQQDSLQTILN 969 (970)
T ss_pred Cc-hhHHHHHHhcCHHHHHHHHHHhc
Confidence 44 36889999999999999988754
No 70
>KOG1020|consensus
Probab=98.10 E-value=0.034 Score=64.79 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=77.6
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 174 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~ 174 (592)
+...+..|...+..+...+|--|+.+|..|++.-+..+ -.+.+...+...+.|++..||.+|..-+|+|.-...+ ..
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~ 890 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LI 890 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HH
Confidence 45556666666677777788888888888877655422 2355666677777788888888888888877654332 34
Q ss_pred ccchHHHHHHHHccc---cCCcc-----------chhhhHHHH---HHhcCchhhHHHHHHHhhhhhh
Q psy9904 175 DSYLKPLMTEMLGCM---NGMVP-----------HLNELVPFL---ITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 175 ~~~l~~ll~~Ll~~l---~~~vq-----------~l~~l~p~l---~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.+|+..+.+.++..- .|||= .|+.+...+ ..-.+|++.-++..++.++.++
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 556666665554432 22321 122222222 3334677777778877777654
No 71
>KOG1059|consensus
Probab=98.08 E-value=0.0039 Score=67.02 Aligned_cols=76 Identities=20% Similarity=0.147 Sum_probs=60.7
Q ss_pred cccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC
Q psy9904 70 LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D 149 (592)
.+.-.+||-|...+=.+-..+|+. +.+.+|.+.+.+.|+++.+.-||+-.+..+|...+.. | -++-|.+.+.|.+
T Consensus 155 sskpYvRKkAIl~lykvFLkYPeA-lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn---y-L~LAP~ffklltt 229 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLKYPEA-LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN---Y-LQLAPLFYKLLVT 229 (877)
T ss_pred cCchHHHHHHHHHHHHHHHhhhHh-HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc---c-ccccHHHHHHHhc
Confidence 345678999998888888888764 5677899999999999999999999999999877742 2 3577778887765
Q ss_pred C
Q psy9904 150 K 150 (592)
Q Consensus 150 ~ 150 (592)
+
T Consensus 230 S 230 (877)
T KOG1059|consen 230 S 230 (877)
T ss_pred c
Confidence 4
No 72
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.08 E-value=4.6e-06 Score=52.93 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 139 LVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 139 lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
++|.++++++|++|.||.+|+++||.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999975
No 73
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.96 E-value=0.017 Score=61.24 Aligned_cols=287 Identities=14% Similarity=0.221 Sum_probs=147.1
Q ss_pred CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCC---CccchHHHHH
Q psy9904 108 HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQP---HDSYLKPLMT 183 (592)
Q Consensus 108 s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~---~~~~l~~ll~ 183 (592)
.++...-++-+..+..+-+++.+.....++.+...+....++| +|+--.-...++|.+.....+.. ...+-..+++
T Consensus 41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 3466677777777777777666554455555555555555666 68888888889998887755321 1122222222
Q ss_pred HHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhc
Q psy9904 184 EMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVG 263 (592)
Q Consensus 184 ~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g 263 (592)
.+..-+.+.| .+++||..+++ ..++ +...
T Consensus 121 ~f~~ILq~dV---~EF~PYvfQIl---a~Ll---------------------------------------------e~~~ 149 (435)
T PF03378_consen 121 PFQEILQQDV---QEFIPYVFQIL---AQLL---------------------------------------------ELRP 149 (435)
T ss_dssp HHHHHHHTT----TTTHHHHHHHH---HHHH---------------------------------------------HHSS
T ss_pred HHHHHHHHHH---HHHHHHHHHHH---HHHH---------------------------------------------HcCC
Confidence 2222111222 46677777666 2222 1111
Q ss_pred -ccCCChhhHhhhhHHHHHH--HhhcccCCccchHHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHHHHHHHHHhhcC
Q psy9904 264 -HHLNKPEYISLLMPPLIQK--WNILKDEDKDLFPLLECLSSVATALQAGFL--PYCEPVYRRCVSLIEQTLNQHMANSQ 338 (592)
Q Consensus 264 -~~~~~~~y~~~lmp~L~~~--~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~--py~~~v~~~~~~~l~~~l~~~~~~~~ 338 (592)
..+ |+.+..++|+|+.- |+. ..+.-++..-|..+.+.-+..+. +++++++ .+.++.+..+
T Consensus 150 ~~~~--p~~y~~L~~~Ll~p~lWe~----~gniPalvrLL~a~i~k~~~~i~~~~~l~~iL----gvFQkLi~sk----- 214 (435)
T PF03378_consen 150 SSPL--PDAYKQLFPPLLSPALWER----RGNIPALVRLLQAYIKKDPSFIVANNQLEPIL----GVFQKLIASK----- 214 (435)
T ss_dssp --S----TTTGGGHHHHTSGGGGGS----TTTHHHHHHHHHHHHHHHGGG----S-CHHHH----HHHHHHHT-T-----
T ss_pred CCCC--cHHHHHHHHHHcCcchhcc----CCCcCcHHHHHHHHHHhCchhhcchhhHHHHH----HHHHHHHCCC-----
Confidence 222 36777888888753 432 11222334445555555555443 4666654 4444444321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCC-CChHHHHHHHHHHHHHHHHchhh-hhhh
Q psy9904 339 NPEQFDAPDKDFMIVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQD-PMPEVRQSSFALLGDLTKACFSH-VHPC 415 (592)
Q Consensus 339 ~~~~~~~~d~~~~~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~-~~~~vR~~a~~~l~~la~~~~~~-~~~~ 415 (592)
.....+++++.+++..++. .+.||+ +.++.+++..++. +....++.-...++-++...+.+ +...
T Consensus 215 ----------~~D~~gF~LL~~iv~~~p~~~l~~yl--~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~ 282 (435)
T PF03378_consen 215 ----------ANDHYGFDLLESIVENLPPEALEPYL--KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQT 282 (435)
T ss_dssp ----------TCHHHHHHHHHHHHHHS-HHHHGGGH--HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ----------CcchHHHHHHHHHHHHCCHHHHHHHH--HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 1123578999999999986 478999 7899999999874 34445555555555555444332 2222
Q ss_pred hhh----HHHHHHh-----ccCC-CChhHHHHHHHHHHHHHHhcC---chhhhhHHHHHHHHHHHHcCCC
Q psy9904 416 ISD----FMPILGQ-----NLNP-DLISVCNNATWAIGEISVKLG---EDMRRYVPMVINQLIIIINRPN 472 (592)
Q Consensus 416 l~~----llp~l~~-----~l~~-~~~~v~~~A~~~Lg~ia~~~~---~~~~p~~~~il~~L~~~l~~~~ 472 (592)
++. +...++. .++. ...--|..++-++..+..... ......+..+++.++.++..+.
T Consensus 283 id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 283 IDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp HHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCc
Confidence 221 1111111 1111 122234445455555432222 2234577788889999988764
No 74
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.95 E-value=7.6e-05 Score=69.31 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
+.+|..+..+++-|+..+| .++.+.+|.+...++|+++.+|+.|+..|..+...-.- ..-+.++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i---k~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI---KVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce---eehhhhhHHHHHHHcCCCH
Confidence 5699999999999999987 56788899999999999999999999999998754332 2335566777888999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9904 153 LVRAITCWTLSRYSHWV 169 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~ 169 (592)
.||..|..++..+....
T Consensus 78 ~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 75
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.94 E-value=4.1e-05 Score=61.99 Aligned_cols=76 Identities=33% Similarity=0.394 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC-
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD- 149 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D- 149 (592)
.+|.+|..++.+|+.+ ++ +.++|.+.+.++|++|.+|.+|+.+||.+. -++.++.+.+.+.|
T Consensus 12 ~~~~vr~~a~~~L~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 12 PDPQVRAEAARALGEL----GD---PEAIPALIELLKDEDPMVRRAAARALGRIG----------DPEAIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCC----TH---HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HHHTHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHc----CC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHcCC
Confidence 3478999999988833 32 345666666779999999999999999873 25688888888876
Q ss_pred ChHHHHHHHHHHHH
Q psy9904 150 KKALVRAITCWTLS 163 (592)
Q Consensus 150 ~~~~VR~~a~~aL~ 163 (592)
++..||.+|.++||
T Consensus 75 ~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 DDEVVREAAAEALG 88 (88)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcC
Confidence 46788999999987
No 76
>KOG0891|consensus
Probab=97.94 E-value=0.0049 Score=76.10 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHhhhc---hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 72 DWNLRKCSAAALDVLANVFR---EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~---~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
+|+.-.-++.+++.++...+ ++.+..-...+.+++.+..-..|.+|+..++..+..++....++++.++..++..+.
T Consensus 106 ~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~ 185 (2341)
T KOG0891|consen 106 DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALR 185 (2341)
T ss_pred ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhcc
Confidence 56677778888888887655 355555555555666555567899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhc
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
|+++.+|..+|.++......+..
T Consensus 186 ~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 186 DPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred CCChhhhHHHHHHHHHHHhhhhh
Confidence 99999999999999998877655
No 77
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.91 E-value=0.00093 Score=65.72 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=134.7
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhch-hchh-hhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccch
Q psy9904 101 ILKETLFHHDWEIKESGILALGAIAEGCM-NGMV-PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 178 (592)
Q Consensus 101 ~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~-~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l 178 (592)
.+..+++|+++..|..|+..|+.+.+..+ +.+. ..+.-++.++...|.|. ..++.+ ..++.++...- . ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~-~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMK-N-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCc-C-CChhhH
Confidence 46678899999999999999999999888 3344 45788999999999775 345544 77777776321 1 122234
Q ss_pred HHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHH
Q psy9904 179 KPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTL 258 (592)
Q Consensus 179 ~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~l 258 (592)
..+++.+.+..+ +|.+ .+..| ...|..+..+
T Consensus 79 ~~i~~~l~~~~~--~q~~--------------~q~~R---------------------------------~~~~~ll~~l 109 (262)
T PF14500_consen 79 VKILRSLFQNVD--VQSL--------------PQSTR---------------------------------YAVYQLLDSL 109 (262)
T ss_pred HHHHHHHHHhCC--hhhh--------------hHHHH---------------------------------HHHHHHHHHH
Confidence 444444443221 0000 00011 1122323333
Q ss_pred HHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy9904 259 ADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANS 337 (592)
Q Consensus 259 a~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~ 337 (592)
.+.....+. ..-+..+..+++.+++ +.||+ +..+++-+..+..... +.++.+.+| .++..+..-..
T Consensus 110 ~~~~~~~l~--~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lF----d~~~cYFPI~F--- 176 (262)
T PF14500_consen 110 LENHREALQ--SMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD--ISEFAEDLF----DVFSCYFPITF--- 176 (262)
T ss_pred HHHhHHHHH--hchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc--cchhHHHHH----HHhhheeeeee---
Confidence 322222211 1222334555554443 22333 3334444444444433 344555444 33333221110
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhhh--hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-hhhh
Q psy9904 338 QNPEQFDAPDKDFMIVALDLLSGLAEGLD--MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS-HVHP 414 (592)
Q Consensus 338 ~~~~~~~~~d~~~~~~ald~l~~l~~~lg--~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~-~~~~ 414 (592)
..|.. |. +.++.-|+-.++-..+. ..|.|+. +|.+++.|......+|..++.+|..++..++. .+.+
T Consensus 177 ~pp~~----dp-~~IT~edLk~~L~~cl~s~~~fa~~~-----~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~ 246 (262)
T PF14500_consen 177 RPPPN----DP-YGITREDLKRALRNCLSSTPLFAPFA-----FPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSP 246 (262)
T ss_pred eCCCC----CC-CCCCHHHHHHHHHHHhcCcHhhHHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 01100 11 11222233333333333 3366554 99999999999999999999999999988875 4778
Q ss_pred hhhhHHHHHH
Q psy9904 415 CISDFMPILG 424 (592)
Q Consensus 415 ~l~~llp~l~ 424 (592)
|+..++..+-
T Consensus 247 ~~~~iw~~lk 256 (262)
T PF14500_consen 247 HWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 78
>KOG1993|consensus
Probab=97.91 E-value=0.025 Score=61.72 Aligned_cols=143 Identities=21% Similarity=0.309 Sum_probs=102.3
Q ss_pred hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCC
Q psy9904 309 AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQD 388 (592)
Q Consensus 309 ~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~ 388 (592)
..|.||++.+|..+.+++...- +-|.+...+.+++.++..+++++.||+ .++++.+-..++.
T Consensus 563 dsFlp~lenlf~~lfkll~~~~----------------e~Dtk~~VL~~ls~lI~r~~e~I~P~~--~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 563 DSFLPYLENLFVLLFKLLKAVE----------------ECDTKTSVLNLLSTLIERVSEHIAPYA--STIVQYLPLLWEE 624 (978)
T ss_pred hhhhhhHHHHHHHHHHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhh
Confidence 4799999988877766655431 123356789999999999999999998 6777777666653
Q ss_pred --CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhH---HH--HHHHHHHHHHHhcCchhhhhHHHHH
Q psy9904 389 --PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV---CN--NATWAIGEISVKLGEDMRRYVPMVI 461 (592)
Q Consensus 389 --~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v---~~--~A~~~Lg~ia~~~~~~~~p~~~~il 461 (592)
..+-.|-..+.++..+...+|.+-.++-+-++|++-.+.+.+.++- .. -..|. ....+. ..+.|-+-.++
T Consensus 625 s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~--~~L~n~-~~l~p~ll~L~ 701 (978)
T KOG1993|consen 625 SEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWL--TTLMNS-QKLTPELLLLF 701 (978)
T ss_pred hccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHH--HHHhcc-cccCHHHHHHH
Confidence 3566888888999999999998877777888888888887665542 22 34443 222222 44666666777
Q ss_pred HHHHHHHcCCC
Q psy9904 462 NQLIIIINRPN 472 (592)
Q Consensus 462 ~~L~~~l~~~~ 472 (592)
|-+..+++...
T Consensus 702 p~l~~~iE~st 712 (978)
T KOG1993|consen 702 PHLLYIIEQST 712 (978)
T ss_pred HHHHHHHHhhh
Confidence 88888877543
No 79
>KOG2259|consensus
Probab=97.91 E-value=0.00062 Score=72.21 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~ 169 (592)
+..-+..+..+++.++|..|+.+|=++.||.. .-..+.....+.|+|....||.+|...+.-++...
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 44446667788999999999999999999654 22456777889999999999999988887776654
No 80
>KOG0891|consensus
Probab=97.91 E-value=0.0056 Score=75.63 Aligned_cols=416 Identities=17% Similarity=0.248 Sum_probs=235.4
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc----CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLF----HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~----s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
...|.++...+++++...|..++|.+-....+..+ +.--+..+-...-+..+.-+....+.+|...++-.++..+.
T Consensus 579 l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~ 658 (2341)
T KOG0891|consen 579 FAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQ 658 (2341)
T ss_pred hhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHh
Confidence 34555666666776666665555554433322222 22222222223333444444555677899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc----c--CC-cc-------------------chhhhHHH
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM----N--GM-VP-------------------HLNELVPF 202 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l----~--~~-vq-------------------~l~~l~p~ 202 (592)
|++++|-.++..++|.+|...+.. ...+.+.++..+.+.+ + ++ +. ..++++.+
T Consensus 659 ~~~s~~~~~~~~~~~eL~~v~g~~-~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~ 737 (2341)
T KOG0891|consen 659 DPSSGVEKAVLETIGELCAVGGEE-MVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDI 737 (2341)
T ss_pred ccchhhHHHHHHHHHHHHHhccch-hhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHH
Confidence 999999999999999999877632 2222223333232222 1 11 10 12666666
Q ss_pred HHHhcCch-hhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH------HHHHHHHHhcccCCChhhHhhh
Q psy9904 203 LITCLSDK-KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD------AIGTLADSVGHHLNKPEYISLL 275 (592)
Q Consensus 203 l~~il~d~-~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d------ai~~la~~~g~~~~~~~y~~~l 275 (592)
+..+++.. ...+|..+...++.. .+.+||........-.....+. .+.++...+..... .|++..
T Consensus 738 l~~~~~te~~~~ir~~~v~~~g~~------g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~--e~~p~v 809 (2341)
T KOG0891|consen 738 LINILKTEQSSTIRREAIRLLGLL------GALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSND--EYYPAV 809 (2341)
T ss_pred HHHHHhHhhhhHHHHHHHHHhhhh------cccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhh--hhhhHH
Confidence 66655322 223455554444432 2345554433321100100000 11111111112211 344433
Q ss_pred h-HHHHHHHhhcccC--CccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHH
Q psy9904 276 M-PPLIQKWNILKDE--DKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352 (592)
Q Consensus 276 m-p~L~~~~~~~~d~--~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 352 (592)
- -.++. .++|. ...+.+.+.+.-.+....|.+..+|++.+.+.++.....+ .+ ....|
T Consensus 810 ~I~~l~~---~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~---------~~-----~~~~f-- 870 (2341)
T KOG0891|consen 810 TIHALMG---ILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSC---------PP-----NLREF-- 870 (2341)
T ss_pred HHHHHhh---hhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhc---------Cc-----chhHH--
Confidence 2 22222 12221 1123567778888889999999999999887776544411 01 01222
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCCh
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI 432 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~ 432 (592)
....++...--++.+..+|. +.+...+...+. .+.++......++.++...++..|..|++..++..+........
T Consensus 871 -~~~q~~~~~~~~~~h~~~~~--~~i~~~i~~~~~-~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s 946 (2341)
T KOG0891|consen 871 -YFQQLTSLVAIVRQHIRPYM--ESIFTLIKDFWP-PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKS 946 (2341)
T ss_pred -HHHhhhhhhhccchhHhhhh--hhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccccc
Confidence 34444444445566777776 455555555543 34556666678889999999999999999999988877743333
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-CchHh-----HhhhcccC
Q psy9904 433 SVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-HDVAP-----LCSSLRNI 506 (592)
Q Consensus 433 ~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-~~~~p-----~~~~L~~~ 506 (592)
..+......++.+ ...|....-|.+.+++.+++++..+.....++.++..++++++..-- ...+. +.+.+..
T Consensus 947 ~~~~~~~~~~~~~-~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~- 1024 (2341)
T KOG0891|consen 947 KDRVVSRKVLQSL-QKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSS- 1024 (2341)
T ss_pred chHHHHHHhhHHH-HhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-
Confidence 3444444444333 23455566788889999999999887778899999999999986421 11222 3333332
Q ss_pred CCchH-hHHHHHHHHHHHh
Q psy9904 507 RDNEE-KDSAFRGMCAMIT 524 (592)
Q Consensus 507 ~d~~E-k~~a~~~l~~li~ 524 (592)
..| +...+..+|.++.
T Consensus 1025 --s~el~~~~~~~l~~l~~ 1041 (2341)
T KOG0891|consen 1025 --SPELRDVIMDTLIALVK 1041 (2341)
T ss_pred --chhHHHHHHHHHHHHHH
Confidence 244 5667788888885
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.91 E-value=1.8e-05 Score=50.17 Aligned_cols=31 Identities=45% Similarity=0.649 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGC 128 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~ 128 (592)
++|.+.++++|++|.+|.+|+.+||.++++|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788889999999999999999999999875
No 82
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0049 Score=64.54 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
..+..++..+--++.-||..|..+|+.++-.....+.| ..+...+-++++|.+.+||..|.+++..+-
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 45566666665667889999999998888665554432 345566667888989999999999887653
No 83
>KOG1248|consensus
Probab=97.83 E-value=0.0076 Score=68.42 Aligned_cols=94 Identities=14% Similarity=0.268 Sum_probs=78.6
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-chh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS-HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDM 453 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~-~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~ 453 (592)
..+++.+..++...+.+++.+|++++..++..++. .+.+|++.+||.++.-+.+....+|..+-..+-.+++.+| +.+
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 46788888899999999999999999999999876 5789999999999997777778888888888888998888 668
Q ss_pred hhhHHHHHHHHHHHHc
Q psy9904 454 RRYVPMVINQLIIIIN 469 (592)
Q Consensus 454 ~p~~~~il~~L~~~l~ 469 (592)
.+|++...-.++..+.
T Consensus 906 e~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 906 ESFLPEEDMKLLTNIR 921 (1176)
T ss_pred HhhCHHHHHHHHHHHH
Confidence 8888865555555543
No 84
>KOG2274|consensus
Probab=97.79 E-value=0.11 Score=57.87 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCch----HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHH
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNI----MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l----~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l 423 (592)
.+.....+++|+.++.- ...|..-. .+.+ +.+..+.-+| +.|-..+-.++-+++. ......|+...++|.+
T Consensus 544 ~evl~llmE~Ls~vv~~-dpef~as~-~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q-~~~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKL-DPEFAASM-ESKICPLTINLFLKYSED--PQVASLAQDLFEELLQ-IAANYGPMQERLIPSL 618 (1005)
T ss_pred HHHHHHHHHHHHHHhcc-Chhhhhhh-hcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHH-HHHhhcchHHHHHHHH
Confidence 34556677777776542 22221111 1223 3444444444 4666666667777766 3344567777788888
Q ss_pred HhccCCCC----hhHHHHHHHHHHHHHHhcCchhh-hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 424 GQNLNPDL----ISVCNNATWAIGEISVKLGEDMR-RYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 424 ~~~l~~~~----~~v~~~A~~~Lg~ia~~~~~~~~-p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
++-++.+. ...+..|+-.|..+.++.+..+. ..+...+|++.++.-+++ +.+...|+-.|+.-+....++++..
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd-D~~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD-DHETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC-ChHHHHhHHHHHHHHHhcCHHHHHh
Confidence 87776554 67888899999988888876543 356788999999987655 3678889999999888776666554
Q ss_pred ---------H--hhhcccCCCch--HhHHHH--HHHHHHHhhCchhhhhhHHHHHHHhhc
Q psy9904 499 ---------L--CSSLRNIRDNE--EKDSAF--RGMCAMITVNPGGVVQEFIFFCDAVAS 543 (592)
Q Consensus 499 ---------~--~~~L~~~~d~~--Ek~~a~--~~l~~li~~~p~~~~~~~~~~~~~i~~ 543 (592)
| +..+..+.|.+ |-..++ +-+..++.+-+..+.+.+.+++.++.+
T Consensus 698 ~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avis 757 (1005)
T KOG2274|consen 698 WHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVIS 757 (1005)
T ss_pred hccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 2 23333333332 222222 335555556667778888888887765
No 85
>KOG1967|consensus
Probab=97.78 E-value=0.00021 Score=78.30 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhhhhhh-hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC
Q psy9904 352 IVALDLLSGLAEGLDMH-IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~~-~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~ 430 (592)
...+.+++.+...+... ..|.+ +.++|++++++.-++..+|-++..++..+..-.+.....|++.++|.++.--.+.
T Consensus 885 ~~yl~~LshVl~~vP~~vllp~~--~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 885 HNYLEALSHVLTNVPKQVLLPQF--PMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred hHHHHHHHHHHhcCCHHhhccch--hhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 34567788887777654 55766 7899999999999999999999999999999888888899999999999876555
Q ss_pred C---hhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q psy9904 431 L---ISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIG 486 (592)
Q Consensus 431 ~---~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lg 486 (592)
+ ..||..|+.+|+.+.+..+ ..+.||-+.++..|++.|+++. |-||..|+.|=+
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK--RlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK--RLVRKEAVDTRQ 1020 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH--HHHHHHHHHHhh
Confidence 4 5799999999999999887 5688999999999999998765 888888876644
No 86
>KOG1077|consensus
Probab=97.77 E-value=0.092 Score=56.72 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy9904 250 ILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQ 328 (592)
Q Consensus 250 ~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~ 328 (592)
.++++|. ++-.+.++ |..+..-+..|-+.+. ....++ +-++|.+..++.+ +| ....+..=...|..
T Consensus 309 VLFeaI~-l~~h~D~e---~~ll~~~~~~Lg~fls---~rE~NiRYLaLEsm~~L~ss---~~---s~davK~h~d~Ii~ 375 (938)
T KOG1077|consen 309 VLFEAIS-LAIHLDSE---PELLSRAVNQLGQFLS---HRETNIRYLALESMCKLASS---EF---SIDAVKKHQDTIIN 375 (938)
T ss_pred HHHHHHH-HHHHcCCc---HHHHHHHHHHHHHHhh---cccccchhhhHHHHHHHHhc---cc---hHHHHHHHHHHHHH
Confidence 4566654 23333222 3455555555555432 223333 5678888777765 22 11111111222233
Q ss_pred HHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Q psy9904 329 TLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKAC 408 (592)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~ 408 (592)
.|. .+.|-.+|..++|+|-+++..-.. ..|+.-+++.+..-++.+|+...-=++-|++.+
T Consensus 376 sLk------------terDvSirrravDLLY~mcD~~Na--------k~IV~elLqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 376 SLK------------TERDVSIRRRAVDLLYAMCDVSNA--------KQIVAELLQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred Hhc------------cccchHHHHHHHHHHHHHhchhhH--------HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 332 134667888999999998764221 345666777777788999999998889999999
Q ss_pred hhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Q psy9904 409 FSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRL 488 (592)
Q Consensus 409 ~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl 488 (592)
..+..-|++-++..+--.=+.-+.+|- +-+-.+.. -.+++.+|.- .++...|+.+..+.++....+.-+|..
T Consensus 436 AtDy~WyVdviLqLiriagd~vsdeVW----~RvvQiVv-Nnedlq~yaa---k~~fe~Lq~~a~hE~mVKvggyiLGEf 507 (938)
T KOG1077|consen 436 ATDYSWYVDVILQLIRIAGDYVSDEVW----YRVVQIVV-NNEDLQGYAA---KRLFEYLQKPACHENMVKVGGYILGEF 507 (938)
T ss_pred cCCcchhHHHHHHHHHHhcccccHHHH----HHhheeEe-cchhhhHHHH---HHHHHHHhhhHHHHHHHHhhhhhhhhh
Confidence 999999999888777544322222221 12222221 2356666643 355666665432233333333444444
Q ss_pred hhhCCC--chHh-----HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccC-CCchhHHHHHHHHHH
Q psy9904 489 GYVCPH--DVAP-----LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWS-TPKEDLKEMFHKILH 560 (592)
Q Consensus 489 ~~~~~~--~~~p-----~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~ll~ 560 (592)
|.--.+ ...| .++.=-..-....|.--+.+...++...|+. .+.+..+|. .|. -.+.|+++....-++
T Consensus 508 g~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi-~~~v~~vFq---~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 508 GNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEI-KSNVQKVFQ---LYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhh-hHHHHHHHH---hhcccCCHHHHHHHHHHHH
Confidence 422111 1112 1211111233444555666777777777653 333333333 333 267788887666665
Q ss_pred HHHhccChhhHHHHHhcCCH
Q psy9904 561 GFRTQVGDENWQRFADQFPD 580 (592)
Q Consensus 561 ~~~~~~~~~~~~~~~~~l~~ 580 (592)
-.+-.-- +-++.++..+||
T Consensus 584 l~k~as~-dvL~~vleeMPp 602 (938)
T KOG1077|consen 584 LSKLAST-DVLQTVLEEMPP 602 (938)
T ss_pred HHHhccc-hHHHHHHhhCCC
Confidence 4442211 358888888875
No 87
>KOG1820|consensus
Probab=97.77 E-value=0.0018 Score=72.69 Aligned_cols=143 Identities=15% Similarity=0.235 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhh
Q psy9904 294 FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLV 373 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~ 373 (592)
..+..|+..||..++..|.+|...+++.++. ++... -...+..+..++..++.+. ++
T Consensus 313 ~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld----~lkek-------------k~~l~d~l~~~~d~~~ns~-----~l- 369 (815)
T KOG1820|consen 313 MLAAQILELIAKKLRPLFRKYAKNVFPSLLD----RLKEK-------------KSELRDALLKALDAILNST-----PL- 369 (815)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHhhcchHHH----Hhhhc-------------cHHHHHHHHHHHHHHHhcc-----cH-
Confidence 5678999999999999999999887655443 33211 1234444444444444422 21
Q ss_pred ccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh--hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc
Q psy9904 374 SNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS--HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~--~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..+++.+...+.+.++.+|.....+++.+.+.++. .+..-+..+.|.++...+|.+..||.+|.-++|.+.+..|+
T Consensus 370 --~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 370 --SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred --HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 46788999999999999999999999999988873 34455788999999999999999999999999999998885
Q ss_pred h-hhhhHHHHH
Q psy9904 452 D-MRRYVPMVI 461 (592)
Q Consensus 452 ~-~~p~~~~il 461 (592)
. +..++..+-
T Consensus 448 ~~~~k~L~~~~ 458 (815)
T KOG1820|consen 448 EVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHhhc
Confidence 4 555555544
No 88
>KOG2956|consensus
Probab=97.76 E-value=0.0031 Score=64.73 Aligned_cols=201 Identities=17% Similarity=0.252 Sum_probs=131.2
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHH-HHHHHHhhchhchhhhHhhHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 96 PVLLPILKETLFHHDWEIKESGIL-ALGAIAEGCMNGMVPHLNELVPFLITCLSD-KKALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~-aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D-~~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
+.+...+.+.-.+.....|+.|+. ..+.+++|.-....+|+.+|+-.+++.|.| .+...|.-|+..|+.+++.-..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-- 363 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-- 363 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--
Confidence 344555555545556788999988 567777887777778999999999999999 6777888888888777653210
Q ss_pred CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
. +.|
T Consensus 364 --~------------------------------l~D-------------------------------------------- 367 (516)
T KOG2956|consen 364 --R------------------------------LFD-------------------------------------------- 367 (516)
T ss_pred --h------------------------------hhc--------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHH-HHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLEC-LSSVATALQAGFLPYCEPVYRRCVSLIEQTLN 331 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~-l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~ 331 (592)
+.+..+-.+++ ...|.+++. ..+-|| +..++...+. +|+..|.+++.
T Consensus 368 -----------------stE~ai~K~Le---aa~ds~~~v~~~Aeed~~~~las~~P~-----------~~I~~i~~~Il 416 (516)
T KOG2956|consen 368 -----------------STEIAICKVLE---AAKDSQDEVMRVAEEDCLTTLASHLPL-----------QCIVNISPLIL 416 (516)
T ss_pred -----------------hHHHHHHHHHH---HHhCCchhHHHHHHHHHHHHHHhhCch-----------hHHHHHhhHHh
Confidence 11111111111 111222222 333443 4444443332 23445555543
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh-hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch-
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH-IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF- 409 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~-~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~- 409 (592)
. .|...-..++.++..+++.+..+ ..+.+ ++++|.+++..+..+..||+++.-+|-.+....|
T Consensus 417 t-------------~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 417 T-------------ADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred c-------------CcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 1 12233356778889999888754 66777 7899999999999999999999999999999999
Q ss_pred hhhhhhhhhHH
Q psy9904 410 SHVHPCISDFM 420 (592)
Q Consensus 410 ~~~~~~l~~ll 420 (592)
+.+.||+.++-
T Consensus 482 ~~mePhL~~Lt 492 (516)
T KOG2956|consen 482 EEMEPHLEQLT 492 (516)
T ss_pred HhhhhHhhhcc
Confidence 89999998643
No 89
>KOG2032|consensus
Probab=97.72 E-value=0.004 Score=64.32 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=85.5
Q ss_pred ccccchHHHHHHHHHHHHHhh--hch-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHH
Q psy9904 69 SLSDWNLRKCSAAALDVLANV--FRE-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLIT 145 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~--~~~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~ 145 (592)
+..-|+-|..-..-+..+... +++ .++..++..+.+...|++...|.-|+..||.+++||++....|.+.++..++.
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~ 306 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIR 306 (533)
T ss_pred chhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHH
Confidence 334577776666555555432 222 45667777777888899999999999999999999999999999999999999
Q ss_pred hccCC-hHHHHHHHHHHHHHHHHHhhcCCCccchHHH
Q psy9904 146 CLSDK-KALVRAITCWTLSRYSHWVVSQPHDSYLKPL 181 (592)
Q Consensus 146 ~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~l 181 (592)
+|-|. +..|.-.+..+|.++.+-........|+.++
T Consensus 307 gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 307 GLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 99876 4678888888888888776654444555444
No 90
>KOG1943|consensus
Probab=97.69 E-value=0.16 Score=57.53 Aligned_cols=266 Identities=16% Similarity=0.181 Sum_probs=137.1
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhc
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~ 171 (592)
++++.++.++.+.++|.+-.+|.+|+..+|.++...+..+. .+++..++..+.=- ....-..||-+|+.++..-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La---d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-- 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA---DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-- 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH---HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--
Confidence 45677788888899999999999999999999998884333 33444444433211 1334448999999888521
Q ss_pred CCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHH---HHhhhhhhhhhhccCCcccchHHHHHh----
Q psy9904 172 QPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAI---TCWTLSRYSHWVVSQPHDSYLKPLMTE---- 244 (592)
Q Consensus 172 ~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~---a~~~L~~~a~~~~~~~~~~y~~~~~~~---- 244 (592)
-.....++.+++.+++.++-.+. . .+. ...+.||-. .||++.+ ...+....||+..+...
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~-----~---G~~--s~G~~VRDaAcY~~WAf~R---ays~~~l~p~l~~L~s~LL~~ 478 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVR-----R---GQH--SVGQHVRDAACYVCWAFAR---AYSPSDLKPVLQSLASALLIV 478 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhh-----h---ccc--ccccchHHHHHHHHHHHHh---cCChhhhhHHHHHHHHHHHHH
Confidence 11223455666767666621000 0 000 002334444 4455543 22222333433222110
Q ss_pred ---hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHH
Q psy9904 245 ---HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRR 321 (592)
Q Consensus 245 ---~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~ 321 (592)
.+.+..=..|-+++-+.+|..-+. |+=-. |+.. . +.-.+..--.|...++..+. .|-.|..++|.+
T Consensus 479 AlFDrevncRRAAsAAlqE~VGR~~n~-p~Gi~----Lis~---~--dy~sV~~rsNcy~~l~~~ia-~~~~y~~~~f~~ 547 (1133)
T KOG1943|consen 479 ALFDREVNCRRAASAALQENVGRQGNF-PHGIS----LIST---I--DYFSVTNRSNCYLDLCVSIA-EFSGYREPVFNH 547 (1133)
T ss_pred HhcCchhhHhHHHHHHHHHHhccCCCC-CCchh----hhhh---c--chhhhhhhhhHHHHHhHHHH-hhhhHHHHHHHH
Confidence 011101122334455666653221 11000 1110 0 01111223345666655542 466677777654
Q ss_pred HHHH-HHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHH
Q psy9904 322 CVSL-IEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFAL 400 (592)
Q Consensus 322 ~~~~-l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~ 400 (592)
++-- +.++ |...+..+..+|..+...-.+.+.. ..++-++.+.-..+...|...+-.
T Consensus 548 L~t~Kv~HW-----------------d~~irelaa~aL~~Ls~~~pk~~a~-----~~L~~lld~~ls~~~~~r~g~~la 605 (1133)
T KOG1943|consen 548 LLTKKVCHW-----------------DVKIRELAAYALHKLSLTEPKYLAD-----YVLPPLLDSTLSKDASMRHGVFLA 605 (1133)
T ss_pred HHhcccccc-----------------cHHHHHHHHHHHHHHHHhhHHhhcc-----cchhhhhhhhcCCChHHhhhhHHH
Confidence 4311 1111 4556666777777766554444432 234555556556788999998888
Q ss_pred HHHHHHHch
Q psy9904 401 LGDLTKACF 409 (592)
Q Consensus 401 l~~la~~~~ 409 (592)
.|.++..+.
T Consensus 606 ~~ev~~~~~ 614 (1133)
T KOG1943|consen 606 AGEVIGALR 614 (1133)
T ss_pred HHHHHHHhh
Confidence 888876553
No 91
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.68 E-value=0.037 Score=58.83 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=130.9
Q ss_pred HhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 261 SVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNP 340 (592)
Q Consensus 261 ~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~ 340 (592)
++.++..- +....++..+++...... +......+.++++.++.....+= ++..++ ..+...+. .
T Consensus 177 ~l~~~~~~-~~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~--~l~~~l----~~~~~~~~-------~- 240 (415)
T PF12460_consen 177 SLRKDVSL-PDLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDD--DLDEFL----DSLLQSIS-------S- 240 (415)
T ss_pred cCCcccCc-cCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChh--hHHHHH----HHHHhhhc-------c-
Confidence 34444332 345556666665432211 12223566777877776643221 233332 22222210 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch--------hhh
Q psy9904 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF--------SHV 412 (592)
Q Consensus 341 ~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~--------~~~ 412 (592)
..+...+..+++.+.-+++++=-.-.|.. ..+...++..+.+ +++...+...++-+..-.. ..+
T Consensus 241 ----~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~--~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~v 312 (415)
T PF12460_consen 241 ----SEDSELRPQALEILIWITKALVMRGHPLA--TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANV 312 (415)
T ss_pred ----cCCcchhHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchh
Confidence 11223344566666666666532222333 3566777777766 6677777777766654321 112
Q ss_pred -----hhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q psy9904 413 -----HPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIG 486 (592)
Q Consensus 413 -----~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lg 486 (592)
+.++..++|.+++..+....+.+.+-..+|.-+..+.+. -+.++++.++|.|++.|+.++ ..++.++..++-
T Consensus 313 klLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~--~~v~~s~L~tL~ 390 (415)
T PF12460_consen 313 KLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD--ADVLLSSLETLK 390 (415)
T ss_pred hhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Confidence 245678999999998877777899999999999999984 478999999999999998776 568888888888
Q ss_pred HhhhhCCCchHhHh
Q psy9904 487 RLGYVCPHDVAPLC 500 (592)
Q Consensus 487 rl~~~~~~~~~p~~ 500 (592)
.+....|+.+.+.+
T Consensus 391 ~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 391 MILEEAPELISEHL 404 (415)
T ss_pred HHHHcCHHHHHHHH
Confidence 88776666555533
No 92
>KOG4413|consensus
Probab=97.67 E-value=0.047 Score=53.70 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=75.8
Q ss_pred HHHHHHHHHhh-hchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhh----HhhHHHHHHHhccCChH
Q psy9904 79 SAAALDVLANV-FREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPH----LNELVPFLITCLSDKKA 152 (592)
Q Consensus 79 aa~~L~~la~~-~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~----l~~lvp~l~~~L~D~~~ 152 (592)
...||.+|-+. .|..+.|.++|-++..+..++..++--++..+|.|.|.|. ..++.. -..++|.++.++..++-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 55678887764 4568999999999999999999999999999999999998 334333 25799999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9904 153 LVRAITCWTLSRYSH 167 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~ 167 (592)
.|..+|..++.+++-
T Consensus 143 eVAkAAiesikrial 157 (524)
T KOG4413|consen 143 EVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999985
No 93
>KOG1020|consensus
Probab=97.65 E-value=0.15 Score=59.61 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHHHHHhhhch-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 72 DWNLRKCSAAALDVLANVFRE-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
.-++|.-|.+||..+++.=+. -.-|.+...+...+.|+...||+||+-.+|...-..++. ..+....+.+...|+
T Consensus 829 ~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~----~~qyY~~i~erIlDt 904 (1692)
T KOG1020|consen 829 AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL----IFQYYDQIIERILDT 904 (1692)
T ss_pred hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH----HHHHHHHHHhhcCCC
Confidence 467999999999999987664 334777888889999999999999999999988777764 445566677888999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l 189 (592)
...||..+..-+..+|+..+. -.-++.+...++.+.
T Consensus 905 gvsVRKRvIKIlrdic~e~pd---f~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEETPD---FSKIVDMCAKMLRRV 940 (1692)
T ss_pred chhHHHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHh
Confidence 999999999999999987653 234555555566665
No 94
>KOG2021|consensus
Probab=97.61 E-value=0.0086 Score=64.72 Aligned_cols=321 Identities=18% Similarity=0.237 Sum_probs=180.2
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhh---cCCChhHHHHHHHHHHHHHhhchh--------chh--hhHhhH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETL---FHHDWEIKESGILALGAIAEGCMN--------GMV--PHLNEL 139 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l---~s~~~~~R~aa~~aLg~iaeg~~~--------~i~--~~l~~l 139 (592)
-.+||---.-++.++..-|.-.+..+-.-+...+ +..+|..-|.|+.-+-.++|+... .++ ..+..+
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~ 492 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN 492 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence 3488887788888888777555555555554433 345799999999999999987653 111 223355
Q ss_pred HHHHHH--hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-----cCCcc----c--------h-hhh
Q psy9904 140 VPFLIT--CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-----NGMVP----H--------L-NEL 199 (592)
Q Consensus 140 vp~l~~--~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-----~~~vq----~--------l-~~l 199 (592)
++.+.. .+..+++.|+---...+-||...+..+ .++++.++...+..- |.+|. + + ..+
T Consensus 493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkql 570 (980)
T KOG2021|consen 493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQL 570 (980)
T ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHH
Confidence 555544 356788999999999999999988753 557888887776543 22333 1 1 677
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHH--HhcccCCChhhHhhhhH
Q psy9904 200 VPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLAD--SVGHHLNKPEYISLLMP 277 (592)
Q Consensus 200 ~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~--~~g~~~~~~~y~~~lmp 277 (592)
+||...+++.-..++... ..++ +++ +... . ...+-..+|+++|-+.. ....+. +..|...++.
T Consensus 571 vpfie~iln~iqdlL~~~-vtt~-N~~----s~~l-t-------~fddqlyIfEtiGviI~l~n~paE~-qaay~~~lit 635 (980)
T KOG2021|consen 571 VPFIEEILNKIQDLLHIK-VTTI-NAQ----SDNL-T-------IFDDQLYIFETIGVIITLNNSPAEL-QAAYANTLIT 635 (980)
T ss_pred HHHHHHHHHHHHHHHcCc-CCCc-Ccc----cccc-c-------cccccceeeecceEEEeCCCCCHHH-HHHHHhcccC
Confidence 788888773222111000 0000 000 0000 0 00000123444443321 011111 1145666665
Q ss_pred HHHHHHh------hc-ccCCccchHHHHH------HHHHHHHHhhcccc----ccHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 278 PLIQKWN------IL-KDEDKDLFPLLEC------LSSVATALQAGFLP----YCEPVYRRCVSLIEQTLNQHMANSQNP 340 (592)
Q Consensus 278 ~L~~~~~------~~-~d~~~~~~~~~e~------l~~ia~~~g~~f~p----y~~~v~~~~~~~l~~~l~~~~~~~~~~ 340 (592)
+++.... .+ +|.+. ...+.+| ++.+++.+..+..+ -...+|..+...+...+.-- +
T Consensus 636 pl~~~~~igl~~a~lasde~~-pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f-----~- 708 (980)
T KOG2021|consen 636 PLILDQIIGLLFAQLASDEAS-PVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF-----N- 708 (980)
T ss_pred hHHHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc-----c-
Confidence 5544311 11 12211 1233444 44444433222221 12234555555555544321 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHH
Q psy9904 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFM 420 (592)
Q Consensus 341 ~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~ll 420 (592)
.-..+|...--.+..++..+|+...||+ ++..+.++ ++.+..--..-+.+|+.+...++.+..+++.+++
T Consensus 709 -----k~E~iRsavrft~hRmI~~lg~~vlPfi--pklie~lL---~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqml 778 (980)
T KOG2021|consen 709 -----KFENIRSAVRFTFHRMIPILGNKVLPFI--PKLIELLL---SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQML 778 (980)
T ss_pred -----ccchhHHHHHHHHHHHHHhcchhhhcch--HHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123555555678889999999999998 66666554 4445555667788999999888999999999999
Q ss_pred HHHHhcc
Q psy9904 421 PILGQNL 427 (592)
Q Consensus 421 p~l~~~l 427 (592)
|.++..+
T Consensus 779 ppll~rI 785 (980)
T KOG2021|consen 779 PPLLNRI 785 (980)
T ss_pred HHHHHHH
Confidence 8887654
No 95
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.0015 Score=60.68 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~ 428 (592)
.+|..++-+++.++...+.-+.| .++.+..+|+|+++.||+.|+-++..|... ++...=+.++..++..+.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~------~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEP------YLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHh------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHc
Confidence 45667777888777666544444 468899999999999999999999998764 333444667777888889
Q ss_pred CCChhHHHHHHHHHHHHHHh-cCchhhhhHHHHHH
Q psy9904 429 PDLISVCNNATWAIGEISVK-LGEDMRRYVPMVIN 462 (592)
Q Consensus 429 ~~~~~v~~~A~~~Lg~ia~~-~~~~~~p~~~~il~ 462 (592)
|++++||+.|...+.++... .+..+..++++++.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999877 34444444444433
No 96
>KOG0168|consensus
Probab=97.57 E-value=0.1 Score=57.54 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=33.3
Q ss_pred HhhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcC
Q psy9904 136 LNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 136 l~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
++.++|.|+.+|++. ++.+...||.||..+++.++..
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 578999999999987 5889999999999999998764
No 97
>KOG2259|consensus
Probab=97.56 E-value=0.0023 Score=68.10 Aligned_cols=303 Identities=14% Similarity=0.131 Sum_probs=177.3
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch--hc----hhhhHhhHHHHHHH
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM--NG----MVPHLNELVPFLIT 145 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~--~~----i~~~l~~lvp~l~~ 145 (592)
+.+||+.|+.+|=.|++++. +-..+.....+.++|.+-.+|.+|+..+...+.-|+ .. =..+....+.-+..
T Consensus 211 D~~Vrt~A~eglL~L~eg~k--L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~ 288 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFK--LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR 288 (823)
T ss_pred CcchHHHHHHHHHhhccccc--ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH
Confidence 46799999999999998543 334556677788899999999999999999888873 11 12456788999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 146 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 146 ~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.++|-++.||--|..+||.+-..- .+++...+. + +++ ..+ |. .+.
T Consensus 289 ~v~D~sl~VRV~AaK~lG~~~~vS-----ee~i~QTLd---K-----------------Klm---s~l-RR------kr~ 333 (823)
T KOG2259|consen 289 AVRDRSLSVRVEAAKALGEFEQVS-----EEIIQQTLD---K-----------------KLM---SRL-RR------KRT 333 (823)
T ss_pred HHhcCceeeeehHHHHhchHHHhH-----HHHHHHHHH---H-----------------HHh---hhh-hh------hhh
Confidence 999999999999999999875432 112222111 0 011 000 00 011
Q ss_pred hhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHH
Q psy9904 226 SHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVAT 305 (592)
Q Consensus 226 a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~ 305 (592)
++.- -++ +|.. |. =+-|++. + ++-+.-..=-+..+.|..
T Consensus 334 ahkr---------------pk~---l~s~-Ge--wSsGk~~-----------------~---advpsee~d~~~~siI~s 372 (823)
T KOG2259|consen 334 AHKR---------------PKA---LYSS-GE--WSSGKEW-----------------N---ADVPSEEDDEEEESIIPS 372 (823)
T ss_pred cccc---------------hHH---HHhc-CC--cccCccc-----------------c---ccCchhhccccccccccc
Confidence 0000 000 0100 00 0011111 1 000000000000011110
Q ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHH
Q psy9904 306 ALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC 385 (592)
Q Consensus 306 ~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~ 385 (592)
| ++..|. .-| +++--+.|..|.+.++.++..- ..|. ...+.++...
T Consensus 373 --G-ACGA~V------------hGl-------------EDEf~EVR~AAV~Sl~~La~ss-P~FA-----~~aldfLvDM 418 (823)
T KOG2259|consen 373 --G-ACGALV------------HGL-------------EDEFYEVRRAAVASLCSLATSS-PGFA-----VRALDFLVDM 418 (823)
T ss_pred --c-ccceee------------eec-------------hHHHHHHHHHHHHHHHHHHcCC-CCcH-----HHHHHHHHHH
Confidence 0 011110 001 1111356778888888887542 2232 4567888999
Q ss_pred hCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy9904 386 MQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLI 465 (592)
Q Consensus 386 l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~ 465 (592)
++|+...||..|+..+.-++.++ ..=+..++.++.+|.|...+||.+.--.|+.. .-.-...+...+..|.
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~----~~~d~~~i~m~v~~lL 489 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA----RVSDLECIDMCVAHLL 489 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHH
Confidence 99999999999999999888872 12356778888889888999998877666543 2122345566666666
Q ss_pred HHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 466 IIINRPNTPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 466 ~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
..|..- +.=++.+-.|+|++|..|+..+..
T Consensus 490 ~~L~ky---PqDrd~i~~cm~~iGqnH~~lv~s 519 (823)
T KOG2259|consen 490 KNLGKY---PQDRDEILRCMGRIGQNHRRLVLS 519 (823)
T ss_pred HHhhhC---CCCcHHHHHHHHHHhccChhhHHH
Confidence 666531 222445678999999999876554
No 98
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.039 Score=58.07 Aligned_cols=316 Identities=18% Similarity=0.198 Sum_probs=178.4
Q ss_pred ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc
Q psy9904 110 DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 110 ~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l 189 (592)
.-....|.++.+..+.+-..+. .+.+.++.|+|-.-|+|.-..|.--++.++.++++.-. ..+++.+.+..|-..+
T Consensus 237 smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~~~vs~L~~fL 312 (898)
T COG5240 237 SMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVDQTVSSLRTFL 312 (898)
T ss_pred ccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Confidence 3455678888887777765532 24678899999999999888888888888888886532 2445555555443322
Q ss_pred cCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCC--cccchHHHHHhhhhHHHHHHHHHHHHHHhcccCC
Q psy9904 190 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP--HDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLN 267 (592)
Q Consensus 190 ~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~--~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~ 267 (592)
+......|-.|...|..++..-+..- ..+-+..++. ..|.-+...||.++-. .|.+
T Consensus 313 ------------------~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs-d~Nr~IstyAITtLLK-TGt~-- 370 (898)
T COG5240 313 ------------------KSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS-DENRTISTYAITTLLK-TGTE-- 370 (898)
T ss_pred ------------------hcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh-cccccchHHHHHHHHH-cCch--
Confidence 22233344445555555543221100 0111222221 1222234456666643 2333
Q ss_pred ChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy9904 268 KPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD 347 (592)
Q Consensus 268 ~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d 347 (592)
+-++.+|..+-.....++|+-+ ..+++++.+++..+..+-..| +..+...|.+. ..
T Consensus 371 --e~idrLv~~I~sfvhD~SD~FK--iI~ida~rsLsl~Fp~k~~s~--------l~FL~~~L~~e------------Gg 426 (898)
T COG5240 371 --ETIDRLVNLIPSFVHDMSDGFK--IIAIDALRSLSLLFPSKKLSY--------LDFLGSSLLQE------------GG 426 (898)
T ss_pred --hhHHHHHHHHHHHHHhhccCce--EEeHHHHHHHHhhCcHHHHHH--------HHHHHHHHHhc------------cc
Confidence 3455555444433333334332 346778777776654433222 23333443321 13
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL 427 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l 427 (592)
-+|...+.|+|+.+.....+.= ...+..+....+| .+.-+-+...||-|.+..+..-.| ...+..+++.+
T Consensus 427 ~eFK~~~Vdaisd~~~~~p~sk------EraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~ 496 (898)
T COG5240 427 LEFKKYMVDAISDAMENDPDSK------ERALEVLCTFIED--CEYHQITVRILGILGREGPRAKTP--GKYVRHIYNRL 496 (898)
T ss_pred chHHHHHHHHHHHHHhhCchHH------HHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCc--chHHHHHHHHH
Confidence 4677778888888876654321 2345555566655 344566677777777665543332 22333444444
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 428 ~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
--++.-||..|+.+|...+.+..+.+.| +.+...|-.++++.+ .+|++.|+.++..|-
T Consensus 497 iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~D--deVRdrAsf~l~~~~ 554 (898)
T COG5240 497 ILENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQD--DEVRDRASFLLRNMR 554 (898)
T ss_pred HHhhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhccc--HHHHHHHHHHHHhhh
Confidence 4467789999999999988776554322 244455556666554 789999998887664
No 99
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.52 E-value=0.0013 Score=59.99 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHH-chhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHH---HHhcCch
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKA-CFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEI---SVKLGED 452 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~-~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~i---a~~~~~~ 452 (592)
.+++++...+.......|--|..-+.++.+. .++.+.|.++++++.+-++|+..+++|..+++.+|..+ ....|+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4567888888777777888888888898888 77889999999999999999999999999999999999 5556789
Q ss_pred hhhhHHHHHHHHHHHHcCC---------CCCchHHHHHHHHHHHhhhhCCC
Q psy9904 453 MRRYVPMVINQLIIIINRP---------NTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 453 ~~p~~~~il~~L~~~l~~~---------~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
+.||+.+++|.+.-..+.. ...+++.+-+..|+..+-.+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 9999999999887443322 12355666666666666655443
No 100
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.50 E-value=0.053 Score=60.52 Aligned_cols=344 Identities=15% Similarity=0.136 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhhhch--h-hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--chhchhhhHhhHHHHHHHhccCChH
Q psy9904 78 CSAAALDVLANVFRE--E-LLPVLLPILKETLFHHDWEIKESGILALGAIAEG--CMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 78 ~aa~~L~~la~~~~~--~-vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg--~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
++...|-.+|+...- . +-..+++.|...+.+++....-.++..|..++-. +...+. -..++|.|.+.+..++.
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCH
Confidence 445556677765541 1 1234566666667777777777777777777632 222332 23689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccC
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 232 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~ 232 (592)
.++..|+..|.+++..-. .-.. +.+ ..++|.|..++.+++. +..+...|.+++..-.
T Consensus 346 ~l~~~aLrlL~NLSfd~~------~R~~----mV~---------~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~-- 402 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPE------LRSQ----MVS---------LGLIPKLVELLKDPNF--REVALKILYNLSMDDE-- 402 (708)
T ss_pred HHHHHHHHHHHHhCcCHH------HHHH----HHH---------CCCcHHHHHHhCCCch--HHHHHHHHHHhccCHh--
Confidence 999999999999974321 1111 111 3456666666665442 2223333444322100
Q ss_pred CcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCC----------------ChhhHh-----hhhHHHHHHHhhcccCCc
Q psy9904 233 PHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLN----------------KPEYIS-----LLMPPLIQKWNILKDEDK 291 (592)
Q Consensus 233 ~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~----------------~~~y~~-----~lmp~L~~~~~~~~d~~~ 291 (592)
.|.+..-.+|+..+.+.+...-. .+.+.+ ..++.|+.+... ..+
T Consensus 403 ------------~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~D- 467 (708)
T PF05804_consen 403 ------------ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK--TRD- 467 (708)
T ss_pred ------------hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh--ccc-
Confidence 00000001111111111110000 001111 112333332111 111
Q ss_pred cchHHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhh--h
Q psy9904 292 DLFPLLECLSSVATALQA---GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL--D 366 (592)
Q Consensus 292 ~~~~~~e~l~~ia~~~g~---~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~l--g 366 (592)
..++.++..++.+-|. .|.+|+.++ +.+ +. .+ ++.++ .++++|.++.-. +
T Consensus 468 --~lLlKlIRNiS~h~~~~k~~f~~~i~~L----~~~----v~-------~~-----~~ee~---~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 468 --PLLLKLIRNISQHDGPLKELFVDFIGDL----AKI----VS-------SG-----DSEEF---VVECLGILANLTIPD 522 (708)
T ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHH----HHH----hh-------cC-----CcHHH---HHHHHHHHHhcccCC
Confidence 1245566666655432 343333322 111 11 01 12343 567777776643 3
Q ss_pred hhhHhhhccCchHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccC--CCChhHHHHHHH
Q psy9904 367 MHIDSLVSNSNIMHLLYQCMQDP--MPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLN--PDLISVCNNATW 440 (592)
Q Consensus 367 ~~~~~~~~~~~l~~~l~~~l~~~--~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~--~~~~~v~~~A~~ 440 (592)
.++..++..-.++|.+...+... ..++...+.-++|.++. .+..++.+. .+++.++..++ .++.+..-..+|
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHH
Confidence 35667775457899999988653 35788888889998874 333344442 56666666553 345566667778
Q ss_pred HHHHHHHhcCchhhhhH---HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 441 AIGEISVKLGEDMRRYV---PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 441 ~Lg~ia~~~~~~~~p~~---~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
++..+..+- + ...++ .++...|+.++.+.+ ..++.-+-.|+.-++...
T Consensus 601 ~f~~ll~h~-~-tr~~ll~~~~~~~ylidL~~d~N--~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 601 VFYQLLFHE-E-TREVLLKETEIPAYLIDLMHDKN--AEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHcCh-H-HHHHHHhccchHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhC
Confidence 888877552 2 22222 356777888877544 667766666666666544
No 101
>KOG4653|consensus
Probab=97.45 E-value=0.0086 Score=65.72 Aligned_cols=229 Identities=17% Similarity=0.189 Sum_probs=137.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHH
Q psy9904 139 LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAIT 218 (592)
Q Consensus 139 lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a 218 (592)
-+.-.+..+.|+.+.+|..+...|.++.+.-.+ ....+-. .++..+...++|.+++|.-.
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~-~~~~~~e------------------kvl~i~ld~LkdedsyvyLn- 787 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK-ATLIQGE------------------KVLAIALDTLKDEDSYVYLN- 787 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcch-hhhhhHH------------------HHHHHHHHHhcccCceeeHH-
Confidence 356677888999999999988888887763211 0011111 12222233344545443221
Q ss_pred HhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCC--ccchHH
Q psy9904 219 CWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDED--KDLFPL 296 (592)
Q Consensus 219 ~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~--~~~~~~ 296 (592)
++..+.++|+. |=+.++|.|.+.+...++.. ..+..+
T Consensus 788 --------------------------------aI~gv~~Lcev---------y~e~il~dL~e~Y~s~k~k~~~d~~lkV 826 (982)
T KOG4653|consen 788 --------------------------------AIRGVVSLCEV---------YPEDILPDLSEEYLSEKKKLQTDYRLKV 826 (982)
T ss_pred --------------------------------HHHHHHHHHHh---------cchhhHHHHHHHHHhcccCCCccceehH
Confidence 23334455553 33566788877554433322 123455
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccC
Q psy9904 297 LECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNS 376 (592)
Q Consensus 297 ~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~ 376 (592)
=|++..++.+.|+-+..|...+.. .++.. ..++|..+|..++..++.+.+.+.-....++ -
T Consensus 827 GEai~k~~qa~Gel~~~y~~~Li~-------tfl~g----------vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~--~ 887 (982)
T KOG4653|consen 827 GEAILKVAQALGELVFKYKAVLIN-------TFLSG----------VREPDHEFRASSLANLGQLCQLLAFQVSDFF--H 887 (982)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-------HHHHh----------cCCchHHHHHhHHHHHHHHHHHHhhhhhHHH--H
Confidence 699999999999988888775433 33321 1245778898899888888877653322233 2
Q ss_pred chHHHHHHHh-CCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHH----HHHHhccC-CCChhHHHHHHHHHHHHHH
Q psy9904 377 NIMHLLYQCM-QDPMPEVRQSSFALLGDLTKACFSHVHPCISDFM----PILGQNLN-PDLISVCNNATWAIGEISV 447 (592)
Q Consensus 377 ~l~~~l~~~l-~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~ll----p~l~~~l~-~~~~~v~~~A~~~Lg~ia~ 447 (592)
+++..++... .|.+.-+|++|..++..+...+|.+..|++...+ ..+..... +++..++--|+.++-++-.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 3444444433 3678899999999999999999988888664333 33333332 2344566677777766543
No 102
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.44 E-value=0.0012 Score=68.42 Aligned_cols=127 Identities=18% Similarity=0.362 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc------CCChhHHHHHHHHHHHHHhhchh---chhh--hHhhHHH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLF------HHDWEIKESGILALGAIAEGCMN---GMVP--HLNELVP 141 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~------s~~~~~R~aa~~aLg~iaeg~~~---~i~~--~l~~lvp 141 (592)
-+.|+||...|-.|++.+++.+.+.+..++++.++ +.+|+.+.+|+..+|+++..... ++.. .+-++..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 56899999999999999999888888888888776 46899999999999999965421 1111 0111222
Q ss_pred HH----HHhcc---CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHH
Q psy9904 142 FL----ITCLS---DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALV 214 (592)
Q Consensus 142 ~l----~~~L~---D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~v 214 (592)
++ +.-|+ +.+|.+|..||+.+..|...+.+ +.+ ..++|.+...|.+++..|
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~----~~l------------------~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK----EQL------------------LQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H----HHH------------------HHHHHHHHHHTTSS-HHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH----HHH------------------HHHHHHHHHHhCCCCcch
Confidence 22 22233 56799999999999998765532 223 345555566666667777
Q ss_pred HHHHHhh
Q psy9904 215 RAITCWT 221 (592)
Q Consensus 215 r~~a~~~ 221 (592)
+..|+.+
T Consensus 363 ~tyAA~~ 369 (370)
T PF08506_consen 363 HTYAAIA 369 (370)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 6665544
No 103
>KOG1058|consensus
Probab=97.44 E-value=0.026 Score=61.20 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=49.0
Q ss_pred chhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 91 REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 91 ~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
.++++.+++|.+.+++.+.+..+|+-|++|++.|-.. .+.+-|-.|+++..++..=+||+
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~Dps 187 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPS 187 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCch
Confidence 3589999999999999999999999999999999876 33445666777777776666663
No 104
>KOG1062|consensus
Probab=97.40 E-value=0.18 Score=55.47 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh
Q psy9904 80 AAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV 133 (592)
Q Consensus 80 a~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~ 133 (592)
..+|..++..++++..+.+.|-+.+.++++++.+|+-|+++.-.+...-++.++
T Consensus 125 glAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e 178 (866)
T KOG1062|consen 125 GLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE 178 (866)
T ss_pred HHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH
Confidence 467888888889999999999999999999999999999999988877776443
No 105
>KOG1967|consensus
Probab=97.38 E-value=0.0013 Score=72.29 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhchhh----hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh---H
Q psy9904 80 AAALDVLANVFREEL----LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK---A 152 (592)
Q Consensus 80 a~~L~~la~~~~~~v----l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~---~ 152 (592)
..+|..+-.+.|.++ +|.++|++.|.+.=++..+|-.++..+.-........+..|+..++|.++..-+|++ -
T Consensus 888 l~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~ 967 (1030)
T KOG1967|consen 888 LEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMM 967 (1030)
T ss_pred HHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchh
Confidence 355666666666543 478999999999999999999999999988888888888999999999999988887 6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.||.+|..||+.+.+.++......|-+.++++|.+ .|+|++..||..|..+-+.+
T Consensus 968 ~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k------------------~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPTKSLLSFRPLVLRALIK------------------ILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccHHHHHHhhh------------------ccCcHHHHHHHHHHHHhhhh
Confidence 79999999999999987765556666666666655 45888999999988776654
No 106
>KOG0413|consensus
Probab=97.37 E-value=0.066 Score=59.60 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP-DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l 468 (592)
.+-+|..+.-+++.++-..+...+ ..||.+.+.|.- +...+|||.+-++|++|.+...-+..|+ |.+...|
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Yi----P~I~~~L 1015 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYI----PMIAASL 1015 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhh----HHHHHHh
Confidence 356788888888888876665444 456666666653 4568999999999999987654444454 4556667
Q ss_pred cCCCCCchHHHHHHHHHHHhhhhC-----CCchHhHhhhcccCCCchHh--HHHHHHHHHHHh-hCchhhhhhHHHHHHH
Q psy9904 469 NRPNTPKTLLENTAITIGRLGYVC-----PHDVAPLCSSLRNIRDNEEK--DSAFRGMCAMIT-VNPGGVVQEFIFFCDA 540 (592)
Q Consensus 469 ~~~~~~~~v~~na~~~lgrl~~~~-----~~~~~p~~~~L~~~~d~~Ek--~~a~~~l~~li~-~~p~~~~~~~~~~~~~ 540 (592)
.+|. .-|+..+.+-|.|+.... ++. |++.|..+-|..|+ .-|=-+|+.+.+ .+|.-...+|+..+-+
T Consensus 1016 ~Dp~--~iVRrqt~ilL~rLLq~~~vKw~G~L---f~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1016 CDPS--VIVRRQTIILLARLLQFGIVKWNGEL---FIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred cCch--HHHHHHHHHHHHHHHhhhhhhcchhh---HHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence 7666 778999999999997531 122 34444444455553 334456677775 5887666666655444
Q ss_pred hh
Q psy9904 541 VA 542 (592)
Q Consensus 541 i~ 542 (592)
+-
T Consensus 1091 ln 1092 (1529)
T KOG0413|consen 1091 LN 1092 (1529)
T ss_pred HH
Confidence 43
No 107
>KOG2956|consensus
Probab=97.34 E-value=0.027 Score=58.04 Aligned_cols=196 Identities=10% Similarity=0.094 Sum_probs=133.5
Q ss_pred CCChHHHHHHHH-HHHHHHHHchhhhhhhhhhHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy9904 388 DPMPEVRQSSFA-LLGDLTKACFSHVHPCISDFMPILGQNLNP-DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLI 465 (592)
Q Consensus 388 ~~~~~vR~~a~~-~l~~la~~~~~~~~~~l~~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~ 465 (592)
+...+-|+.|+. +.+-++..-...+.+|+.+++-.+++.+++ .+...+.-|+..|++++.+-+..+..+.+-.+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 345677888887 667777777778889999999999999998 677889999999999999888888889988888888
Q ss_pred HHHcCCCCCchHHHHHHHHHHHhhh-hCCCc-hHhHhhhcccCCCchHhHHHHHHHHHHHhh-CchhhhhhHHHHHHHhh
Q psy9904 466 IIINRPNTPKTLLENTAITIGRLGY-VCPHD-VAPLCSSLRNIRDNEEKDSAFRGMCAMITV-NPGGVVQEFIFFCDAVA 542 (592)
Q Consensus 466 ~~l~~~~~~~~v~~na~~~lgrl~~-~~~~~-~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~-~p~~~~~~~~~~~~~i~ 542 (592)
..-.+++ ..+..-|..+.-++.. ..|.. +.-.+..+.. .|..-...+++.+.++++. .-..+.+.++.|..++.
T Consensus 378 eaa~ds~--~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQ--DEVMRVAEEDCLTTLASHLPLQCIVNISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCc--hhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 8766554 4555555555444443 34532 2123333322 2332244577799999974 44455555666666554
Q ss_pred -ccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHH
Q psy9904 543 -SWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRL 586 (592)
Q Consensus 543 -~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l 586 (592)
.|...+..++.+..==|--+-+.+|.+.+.+.+.+|+.....-+
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 47777666666533333334446786689999999987765444
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.33 E-value=0.041 Score=56.70 Aligned_cols=91 Identities=30% Similarity=0.350 Sum_probs=68.6
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
+...+.+.+.+.+++|.+|..+..++|.+. ....+|.+...|.|+++.||..|..+||.+.. .
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~ 104 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------P 104 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------h
Confidence 356677778888999999999999977755 35789999999999999999999999998642 1
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcC-chhhHHHHHHHhhhhhh
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLS-DKKALVRAITCWTLSRY 225 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~-d~~~~vr~~a~~~L~~~ 225 (592)
. -+|.+...+. |.+..||..+.++|+..
T Consensus 105 ~----------------------a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 105 E----------------------AVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred h----------------------HHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 1 2222223333 56888999888888764
No 109
>KOG2032|consensus
Probab=97.28 E-value=0.17 Score=52.72 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred HHHHHHHhhhc---hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHH
Q psy9904 81 AALDVLANVFR---EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 81 ~~L~~la~~~~---~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~ 157 (592)
..+.+++..++ +...+.++..+.....+.-|+.|-..+--+..+....--.=.+.+..++-.+.+..+||+..+|..
T Consensus 198 ~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~ 277 (533)
T KOG2032|consen 198 VGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGM 277 (533)
T ss_pred HHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHH
Confidence 34455555444 233444444444444566788888877766666542210011457888999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy9904 158 TCWTLSRYSHWVV 170 (592)
Q Consensus 158 a~~aL~~l~~~~~ 170 (592)
||..|++.++..+
T Consensus 278 a~r~L~~~as~~P 290 (533)
T KOG2032|consen 278 ACRGLGNTASGAP 290 (533)
T ss_pred HHHHHHHHhccCc
Confidence 9999999998754
No 110
>KOG1078|consensus
Probab=97.27 E-value=0.051 Score=59.34 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=56.6
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
..++++++..++.|..-.+-.-|..++-.+..-.+..+.| -+..+-..|+.|++..|.+|..+|.++|...+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 3478889999998887777777777777766655554444 67777888899999999999999999997543
No 111
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.05 Score=60.43 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=31.2
Q ss_pred ChhHHHHH-----HHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 431 LISVCNNA-----TWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 431 ~~~v~~~A-----~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
.+.++++. +|.+|+++.... .+.+..+...+...-.+. ..++-..-...+++...++
T Consensus 461 ~P~~k~~~~~~~~~wl~ge~~~~i~----r~~~~~l~~~~~~~~~E~--levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 461 EPRAKSVTDKYLGAWLLGEFSDIIP----RLEPELLRIAISNFVDET--LEVQYTILMSSVKLIANSI 522 (757)
T ss_pred CcHHHHHHhhhhHHHhHHHHHHHHh----hhhHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhCc
Confidence 46677777 999999986443 233445555554444333 3444444444445544443
No 112
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.25 E-value=0.013 Score=53.63 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=66.6
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHhh
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKK-ALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~~-~~VR~~a~~aL~~l~~~~~ 170 (592)
..+..+...+.+.++|.++..|.+|+..++++++.|+ +.+..|-...+..+++.|+.++ +.++..++.+|..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566777788899999999999999999999999994 6666888888888988888765 5689999999999987664
Q ss_pred c
Q psy9904 171 S 171 (592)
Q Consensus 171 ~ 171 (592)
+
T Consensus 101 ~ 101 (165)
T PF08167_consen 101 G 101 (165)
T ss_pred C
Confidence 3
No 113
>KOG4524|consensus
Probab=97.17 E-value=0.27 Score=55.24 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHHHHhhhh---hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhh-hhhhhHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLD---MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH-PCISDFMPI 422 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg---~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~-~~l~~llp~ 422 (592)
+...|..++|+++....-+. ..+.|.+ .+.++.++.++...++-+-+.||.++..+++++|.-+. .++..++|.
T Consensus 816 ~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~ 893 (1014)
T KOG4524|consen 816 SLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPW 893 (1014)
T ss_pred hHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45567888998887655554 3477887 57899999999999999999999999999999987543 567777877
Q ss_pred HHhccCC
Q psy9904 423 LGQNLNP 429 (592)
Q Consensus 423 l~~~l~~ 429 (592)
+-..+.+
T Consensus 894 l~~~~~~ 900 (1014)
T KOG4524|consen 894 LKHLCQD 900 (1014)
T ss_pred HHHHHHH
Confidence 7655443
No 114
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.12 E-value=0.13 Score=53.43 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH-HhC--CCChHHHHHHHHHHHHHHHHchh------------hhh
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ-CMQ--DPMPEVRQSSFALLGDLTKACFS------------HVH 413 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~-~l~--~~~~~vR~~a~~~l~~la~~~~~------------~~~ 413 (592)
..|..|++++.++++..++...+.+ ..+++.++. .-+ ..+..-+..|+.+++.++..... ++.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~--~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL--MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 3577999999999988776655433 122222222 111 23567888999999999854421 233
Q ss_pred hhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q psy9904 414 PCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITI 485 (592)
Q Consensus 414 ~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~l 485 (592)
.|+. .++|.|. .-....+=++..|++.+-..-..++. +.+..++|.++..|++++ .-|.-=||.||
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~--~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSS--YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS---HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCC--cchhhhhhhhC
Confidence 3333 3556665 32334566788899988877655543 477889999999999766 45665566554
No 115
>KOG1077|consensus
Probab=97.11 E-value=0.6 Score=50.77 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 379 MHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 379 ~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
...++..|+ .++.++|+.|..+|-.+|..-. ...|+..+++.|...++++|+..+--+.-+++..-.+..=|+
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyV 443 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYV 443 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 355667777 7889999999999988875322 234555666666667889998888777888888777777777
Q ss_pred HHHHHHH
Q psy9904 458 PMVINQL 464 (592)
Q Consensus 458 ~~il~~L 464 (592)
..+++.+
T Consensus 444 dviLqLi 450 (938)
T KOG1077|consen 444 DVILQLI 450 (938)
T ss_pred HHHHHHH
Confidence 7666543
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.10 E-value=0.74 Score=51.64 Aligned_cols=336 Identities=14% Similarity=0.168 Sum_probs=170.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchH
Q psy9904 100 PILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179 (592)
Q Consensus 100 ~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~ 179 (592)
..+..+++.++-..| .++..|..+++.......-.-..+++.|++.|+..+..+.-.+...|.+++-.-.. -.
T Consensus 253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN------K~ 325 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN------KD 325 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH------HH
Confidence 344445555555556 66788999999887544444578999999999988888888888888888743211 00
Q ss_pred HHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh------ccCCcccchHHHHHhhhhHHHHHH
Q psy9904 180 PLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV------VSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 180 ~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~------~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
.+.. ..++|-|.+++..++..++..+...|.+++..- -+....|.+.+++.+......+..
T Consensus 326 ~m~~-------------~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~ 392 (708)
T PF05804_consen 326 EMAE-------------SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALK 392 (708)
T ss_pred HHHH-------------cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHH
Confidence 0000 244555555555445555555666666553111 011122333333322111111111
Q ss_pred HHHHHH--HHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHH-HHHH-HHHH
Q psy9904 254 AIGTLA--DSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYR-RCVS-LIEQ 328 (592)
Q Consensus 254 ai~~la--~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~-~~~~-~l~~ 328 (592)
.+..++ +.....|. | ...+|.+++.+..- ..... ..++..+-.++..- .+++.+.+ +.++ ++..
T Consensus 393 iLy~LS~dd~~r~~f~---~-TdcIp~L~~~Ll~~--~~~~v~~eliaL~iNLa~~~-----rnaqlm~~g~gL~~L~~r 461 (708)
T PF05804_consen 393 ILYNLSMDDEARSMFA---Y-TDCIPQLMQMLLEN--SEEEVQLELIALLINLALNK-----RNAQLMCEGNGLQSLMKR 461 (708)
T ss_pred HHHHhccCHhhHHHHh---h-cchHHHHHHHHHhC--CCccccHHHHHHHHHHhcCH-----HHHHHHHhcCcHHHHHHH
Confidence 111121 11111111 1 12344444432111 11111 11111111111100 00110000 0000 1111
Q ss_pred HHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhh---hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy9904 329 TLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLD---MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg---~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la 405 (592)
.+.. .| ...+.++-.+++.-| ..|.+|+ .+++..+ -...+.+..-.++++|+++.
T Consensus 462 a~~~-------------~D----~lLlKlIRNiS~h~~~~k~~f~~~i--~~L~~~v---~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 462 ALKT-------------RD----PLLLKLIRNISQHDGPLKELFVDFI--GDLAKIV---SSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHhc-------------cc----HHHHHHHHHHHhcCchHHHHHHHHH--HHHHHHh---hcCCcHHHHHHHHHHHHhcc
Confidence 1100 01 234566666666543 2366665 3344332 22335666666666666665
Q ss_pred HHchhhhhhhhh--hHHHHHHhccCCC--ChhHHHHHHHHHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCCCCchHHH
Q psy9904 406 KACFSHVHPCIS--DFMPILGQNLNPD--LISVCNNATWAIGEISVKLGEDMRRYVP--MVINQLIIIINRPNTPKTLLE 479 (592)
Q Consensus 406 ~~~~~~~~~~l~--~llp~l~~~l~~~--~~~v~~~A~~~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~ 479 (592)
.. .-.+..++. .++|.+.+.|.+. ..++.-.++-.+|.++. .....+.+- .+++.|+.+|+....+....-
T Consensus 520 ~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 520 IP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred cC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 32 235556664 5889998888754 34677788888898773 334445543 788889999876544577777
Q ss_pred HHHHHHHHhhhh
Q psy9904 480 NTAITIGRLGYV 491 (592)
Q Consensus 480 na~~~lgrl~~~ 491 (592)
..+.++.++..+
T Consensus 597 Qil~~f~~ll~h 608 (708)
T PF05804_consen 597 QILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHHHHcC
Confidence 889999999865
No 117
>KOG1061|consensus
Probab=96.96 E-value=0.88 Score=50.15 Aligned_cols=124 Identities=19% Similarity=0.114 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHH
Q psy9904 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALV 154 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~V 154 (592)
+.|-.-.-|..-|..-|+.-+ ..++.+..-..+++|..|..|+..+|.+-- ......+...+.++++|.+|.|
T Consensus 65 lKKlvyLYl~nYa~~~P~~a~-~avnt~~kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yv 137 (734)
T KOG1061|consen 65 LKKLVYLYLMNYAKGKPDLAI-LAVNTFLKDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYV 137 (734)
T ss_pred HHHHHHHHHHHhhccCchHHH-hhhhhhhccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhH
Confidence 455555555555544443221 233444444578899999888777665432 2334567788889999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 155 RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 155 R~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
|.++..+...+-..-....+ =..+++.|..++.|+++.|-+.|..+|....
T Consensus 138 Rktaa~~vakl~~~~~~~~~---------------------~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 138 RKTAAVCVAKLFDIDPDLVE---------------------DSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred HHHHHHHHHHhhcCChhhcc---------------------ccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99988887776432111000 1356667777777878887777766666553
No 118
>KOG1992|consensus
Probab=96.94 E-value=0.94 Score=50.21 Aligned_cols=433 Identities=15% Similarity=0.205 Sum_probs=208.1
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh-------ch-hchhhhHhhHHHHH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH-DWEIKESGILALGAIAEG-------CM-NGMVPHLNELVPFL 143 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg-------~~-~~i~~~l~~lvp~l 143 (592)
-++||.|.++|..+...-+ .--.++.++. +.+ +...|.||..++...... .+ ......-..+-..+
T Consensus 19 ps~rk~aEr~L~~~e~q~~--y~l~lL~Lv~---~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslI 93 (960)
T KOG1992|consen 19 PSVRKPAERALRSLEGQQN--YPLLLLNLVA---NGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLI 93 (960)
T ss_pred CccCchHHHHHHHhccCCC--chHHHHHHHh---ccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHH
Confidence 4589999999988776422 1112333333 222 688999999999987752 11 11112234566667
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccC-CccchhhhHHHHHHhcCchhhHHHHHHHhh-
Q psy9904 144 ITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG-MVPHLNELVPFLITCLSDKKALVRAITCWT- 221 (592)
Q Consensus 144 ~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~-~vq~l~~l~p~l~~il~d~~~~vr~~a~~~- 221 (592)
+.++-.....++..-..||+-++.. +..+--+.+++.|.+.++. -.-+...+.-.-..+.+-=....|+-+.|.
T Consensus 94 v~lMl~s~~~iQ~qlseal~~Ig~~----DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~E 169 (960)
T KOG1992|consen 94 VTLMLSSPFNIQKQLSEALSLIGKR----DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLE 169 (960)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhcc----ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 7776666788998888888887743 2223345555555554420 000000000000001000000011111111
Q ss_pred ----hhhhhhhhccCCcccchHHHHHhh-------hhHHHHHHHHHHHHHHhc-------ccCCChhhHhhhhHHHHHHH
Q psy9904 222 ----LSRYSHWVVSQPHDSYLKPLMTEH-------KNLLILYDAIGTLADSVG-------HHLNKPEYISLLMPPLIQKW 283 (592)
Q Consensus 222 ----L~~~a~~~~~~~~~~y~~~~~~~~-------~~l~~~~dai~~la~~~g-------~~~~~~~y~~~lmp~L~~~~ 283 (592)
|.+++ .++...|..+|... ..+..+++.+--++...- ++++. ..++.-|+.+.+.+
T Consensus 170 IK~vLd~f~-----~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE-dnm~~wM~~F~k~l 243 (960)
T KOG1992|consen 170 IKLVLDRFA-----EPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE-DNMKTWMGAFHKLL 243 (960)
T ss_pred HHHHHHhhH-----hHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH-hhHHHHHHHHHHHH
Confidence 01110 00011111111110 112233332222222110 23332 44556677766654
Q ss_pred hh----cccCCcc---c----hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChh-HH
Q psy9904 284 NI----LKDEDKD---L----FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKD-FM 351 (592)
Q Consensus 284 ~~----~~d~~~~---~----~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~-~~ 351 (592)
.. +.+++.+ + ..++|-+...+....+.|.||++..+.....++... .+ .+.-| +.
T Consensus 244 ~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~---------s~----~~kyD~Lv 310 (960)
T KOG1992|consen 244 TYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST---------SP----DTKYDYLV 310 (960)
T ss_pred hccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc---------CC----CccHHHHH
Confidence 31 1111111 1 256677777788888899999887654443333321 11 11122 23
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhccCchHHHH---------------------------HHHhCCCCh-HHHHHHHHHHHH
Q psy9904 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLL---------------------------YQCMQDPMP-EVRQSSFALLGD 403 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l---------------------------~~~l~~~~~-~vR~~a~~~l~~ 403 (592)
..|+..|+.+++.- +...+++.+.++..+ -.-++..+. .-|+.|+.+++.
T Consensus 311 s~Al~FLt~V~~r~--~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 311 SKALQFLTSVSRRP--HYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHhhh--hhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 45677777665532 222222223333322 222222233 347889999999
Q ss_pred HHHHchhhhhhhhhhHHHHHHhccCCC---ChhHHHHHHHHHHHHHHhcC------------------------------
Q psy9904 404 LTKACFSHVHPCISDFMPILGQNLNPD---LISVCNNATWAIGEISVKLG------------------------------ 450 (592)
Q Consensus 404 la~~~~~~~~~~l~~llp~l~~~l~~~---~~~v~~~A~~~Lg~ia~~~~------------------------------ 450 (592)
|++.....+.+.+...+..++.....+ ++.-+..|++....++.+.+
T Consensus 389 L~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~ 468 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSP 468 (960)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccC
Confidence 999987766666666666665533211 12222223332222222210
Q ss_pred --------------------ch-hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC---------CchHhHh
Q psy9904 451 --------------------ED-MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP---------HDVAPLC 500 (592)
Q Consensus 451 --------------------~~-~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~---------~~~~p~~ 500 (592)
.. -++++-.++|.++.-|+.+. +.|..=||.++-++-..+. +.++|+.
T Consensus 469 ~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s--~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~ 546 (960)
T KOG1992|consen 469 NVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES--RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFV 546 (960)
T ss_pred ccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHhccccccCccccccchhhcchHH
Confidence 00 02345566777777766544 5566677788877754432 2345522
Q ss_pred ----hhccc---CCCchHhHHHHHHHHHHHhhCchhhhhhHHHH
Q psy9904 501 ----SSLRN---IRDNEEKDSAFRGMCAMITVNPGGVVQEFIFF 537 (592)
Q Consensus 501 ----~~L~~---~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~ 537 (592)
..|.. ..+..|.+=..+++.+++...+..+.++.+..
T Consensus 547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~ 590 (960)
T KOG1992|consen 547 EILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPEL 590 (960)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHH
Confidence 22221 22345666788899999888877765554433
No 119
>KOG2160|consensus
Probab=96.77 E-value=0.28 Score=49.31 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhcc
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNL 427 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l 427 (592)
+-+..++|-|-.++..+... ..+.. -..+..++..+++.+..+|..|..+||.+++..+..-...+. ..++.|+..+
T Consensus 98 e~ke~ald~Le~lve~iDnA-ndl~~-~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNA-NDLIS-LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhH-HhHhh-ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 33467888888888877632 11221 234555666999999999999999999999988754333333 3677777777
Q ss_pred CCC-ChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc---hHh----
Q psy9904 428 NPD-LISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD---VAP---- 498 (592)
Q Consensus 428 ~~~-~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~---~~p---- 498 (592)
+.+ ...+|..|+++++.+.++.......++. .=+..|.+++++.+....++.-++--++.+....... +.+
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 544 4578899999999999887644444332 2267788888886555677777888888887654421 222
Q ss_pred -HhhhcccCCCchHhHHHHHHHHHHHhh
Q psy9904 499 -LCSSLRNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 499 -~~~~L~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
.+..+....+.+-+..+..+++..+..
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 222333333444467778888777753
No 120
>KOG4653|consensus
Probab=96.72 E-value=0.05 Score=60.02 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCC
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDL 431 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~ 431 (592)
..-+++..++++.|+-+..|. ..+....+...++++...|.++++.+|.++....-....++-+++..++.... +..
T Consensus 825 kVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s 902 (982)
T KOG4653|consen 825 KVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGS 902 (982)
T ss_pred hHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCc
Confidence 344889999999999888888 57888888999988888999999999999998876556667777766666554 557
Q ss_pred hhHHHHHHHHHHHHHHhcCchhhhhHHHHHH----HHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 432 ISVCNNATWAIGEISVKLGEDMRRYVPMVIN----QLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 432 ~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~----~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
.-||.+|+-.+.++-..+|.++.|++...+- .+...... +.+..++-.++-|+-.+-
T Consensus 903 ~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~-~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 903 VLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQ-HDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred hhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHH
Confidence 7899999999999999899888886644332 22222222 223556666666666553
No 121
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.71 E-value=0.3 Score=48.14 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=44.8
Q ss_pred hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHH
Q psy9904 415 CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLII 466 (592)
Q Consensus 415 ~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~ 466 (592)
|-+..+|.++..|+++...++.-++..|...+...| ..+.+|+..++..|-.
T Consensus 205 fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 205 FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999988887 5589999998887753
No 122
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.69 E-value=0.0091 Score=62.62 Aligned_cols=86 Identities=26% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchH
Q psy9904 100 PILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179 (592)
Q Consensus 100 ~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~ 179 (592)
+.|...++++++.+|.+++-++|..- ..-.+.+...|+|+++.||..|+.+||.+..
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------ 176 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR------------ 176 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------
Confidence 33334445556666665555555411 1123345555556666666666666665431
Q ss_pred HHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 180 PLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 180 ~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
....|.|...+.|.+..||..|.+++..+
T Consensus 177 -----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 -----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 22334445556777888888887777654
No 123
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.63 E-value=0.029 Score=47.08 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHH
Q psy9904 389 PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLIII 467 (592)
Q Consensus 389 ~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~ 467 (592)
.....|+.++..++.+.+.+++.+.++.++++-.|...+..+ +++..|+.+...+...++ +++.|++++++-.+++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999889999999999999999888665 799999999999999887 67889999988888876
Q ss_pred Hc
Q psy9904 468 IN 469 (592)
Q Consensus 468 l~ 469 (592)
++
T Consensus 105 ~~ 106 (107)
T PF08064_consen 105 WD 106 (107)
T ss_pred cc
Confidence 64
No 124
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.62 E-value=0.029 Score=51.38 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHhh-hhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHH---HHHchhhhhhhhhhHHHHH
Q psy9904 348 KDFMIVALDLLSGLAEG-LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDL---TKACFSHVHPCISDFMPIL 423 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~-lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~l---a~~~~~~~~~~l~~llp~l 423 (592)
..++..|...+..+.+. -++.+.|.+ ++++.-+...|+.++++|...++.+|..| ....|+.+.||+.+++|.+
T Consensus 52 ~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 52 HPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred ccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34566777777777777 556789999 89999999999999999999999999999 7778999999999999998
Q ss_pred H----hccC--C-----CChhHHHHHHHHHHHHHHhcCch
Q psy9904 424 G----QNLN--P-----DLISVCNNATWAIGEISVKLGED 452 (592)
Q Consensus 424 ~----~~l~--~-----~~~~v~~~A~~~Lg~ia~~~~~~ 452 (592)
- ++.+ | ....++.-.-.+|..+-+++|++
T Consensus 130 n~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 130 NLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 7 3321 1 11234444555565565555543
No 125
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.62 E-value=0.95 Score=55.86 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhh-h----hhhHHHHHHhccCC-------------------CC---
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHP-C----ISDFMPILGQNLNP-------------------DL--- 431 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~-~----l~~llp~l~~~l~~-------------------~~--- 431 (592)
+.-+..+..++..+||..|+..|=++....|..|.+ + +..++-.++..++. +.
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 333444556788999999999999999989888876 2 23334333333210 00
Q ss_pred ----hhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh
Q psy9904 432 ----ISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP 498 (592)
Q Consensus 432 ----~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p 498 (592)
.+.+.-|+..+.++-.+.-+.+.+.++.++..|...+.+++ ..+..-.+.|+-++...++..+.+
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n--~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPH--QSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHHHhhccCCH
Confidence 24455666666666554445566677777777777777665 677777788888888877765544
No 126
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.58 E-value=0.011 Score=60.91 Aligned_cols=79 Identities=30% Similarity=0.429 Sum_probs=62.7
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc-CC
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS-DK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~-D~ 150 (592)
+|.+|..|+..++.+.. ...+|.+...+.+.++.+|..|+.+||.+-. +..+|.+++.|. |+
T Consensus 56 ~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~ 118 (335)
T COG1413 56 DLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDE 118 (335)
T ss_pred CHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCC
Confidence 58899999988555443 3456667777899999999999998887653 456677777777 89
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy9904 151 KALVRAITCWTLSRYSH 167 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~ 167 (592)
+..||..+.++|+.+..
T Consensus 119 ~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 119 NEGVRAAAARALGKLGD 135 (335)
T ss_pred cHhHHHHHHHHHHhcCc
Confidence 99999999999999754
No 127
>KOG1820|consensus
Probab=96.54 E-value=0.033 Score=62.81 Aligned_cols=203 Identities=18% Similarity=0.188 Sum_probs=120.8
Q ss_pred hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 92 EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 92 ~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
.++++.+-+.+...+.|++|..|..|+..+..+.+... +....+...+...+-..+.|.+..|-..|..+|..++.-+.
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 36778888888888999999999999999999888666 44445666677777778899999999999999999998886
Q ss_pred cCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh--hhh-
Q psy9904 171 SQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE--HKN- 247 (592)
Q Consensus 171 ~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~--~~~- 247 (592)
.. ...|...+++.++.++..+ ...+|-.+..++..++.. .....++.-++.. .+|
T Consensus 328 ~~-~~~~~~~v~p~lld~lkek------------------k~~l~d~l~~~~d~~~ns---~~l~~~~~~I~e~lk~knp 385 (815)
T KOG1820|consen 328 PL-FRKYAKNVFPSLLDRLKEK------------------KSELRDALLKALDAILNS---TPLSKMSEAILEALKGKNP 385 (815)
T ss_pred hh-hHHHHHhhcchHHHHhhhc------------------cHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhcCCCh
Confidence 53 3556666666666665111 111111111111111110 0001111111110 111
Q ss_pred --HHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhc-cccccHHHH
Q psy9904 248 --LLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAG-FLPYCEPVY 319 (592)
Q Consensus 248 --l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~-f~py~~~v~ 319 (592)
...+...+...-...++....-.-+..+.|.++.. ..|.++++ ..+.+|++.+..++|.+ |..|+..+.
T Consensus 386 ~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~---~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 386 QIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH---INDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred hhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh---ccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 11122222223333442221114567788888864 33555555 68899999999999974 333444443
No 128
>KOG0414|consensus
Probab=96.51 E-value=0.91 Score=52.28 Aligned_cols=106 Identities=11% Similarity=0.201 Sum_probs=79.0
Q ss_pred CchHHHHHHHhCC----CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcC
Q psy9904 376 SNIMHLLYQCMQD----PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 376 ~~l~~~l~~~l~~----~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
..+.|++.+.+++ .+++++.+|.-+++.+.-.-.+ |...=+|.++..+. .+.+-+|.|++-++|+++...+
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4567777777754 3689999999999988754333 44555666666665 5788899999999999999888
Q ss_pred chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 451 EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 451 ~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
.-+.||-+.+ ...|.+++ ..|+.||.-++..++..
T Consensus 994 nlie~~T~~L----y~rL~D~~--~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 994 NLIEPWTEHL----YRRLRDES--PSVRKTALLVLSHLILN 1028 (1251)
T ss_pred cccchhhHHH----HHHhcCcc--HHHHHHHHHHHHHHHHh
Confidence 7777776654 45555544 88999999998888754
No 129
>KOG0168|consensus
Probab=96.49 E-value=0.39 Score=53.23 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhc
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQN 426 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~ 426 (592)
.+++-.|+.++..+...+.....-.+. ...+|.++..|. -..-+|-+.++.+|..|.+..+..+.. ...++-.+ ..
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~-AG~l~a~L-sy 302 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVD-EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ-AGALSAVL-SY 302 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeec-ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh-cccHHHHH-HH
Confidence 577888999999999999876554442 235666655543 345689999999999998876654421 11122111 11
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 427 LNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 427 l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
++-=...+..+|+.....+|..+..+--.|+...+|.|.++|++.+ +...+++|+|+.|++...
T Consensus 303 lDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D--~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 303 LDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQD--KKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhc
Confidence 1111124567888888889988875544677789999999999876 789999999999998653
No 130
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.44 E-value=0.28 Score=49.99 Aligned_cols=204 Identities=13% Similarity=0.226 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh----CC---CChHHHHHHHHHHHHHHHHchhhhhhh----hhhHHH
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM----QD---PMPEVRQSSFALLGDLTKACFSHVHPC----ISDFMP 421 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l----~~---~~~~vR~~a~~~l~~la~~~~~~~~~~----l~~llp 421 (592)
..+.+++.++..+|..+.+++ +.++..+..+. .+ ..|+.|..-+.++..+.++|.+.+... +..++.
T Consensus 91 evL~l~~~ii~kl~~~~~~~v--~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQV--PQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCH--HHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Confidence 468899999999999887877 56666665553 22 469999999999999999998766543 455667
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHHHhcCc---h-----hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh--
Q psy9904 422 ILGQNLNPDLISVCNNATWAIGEISVKLGE---D-----MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV-- 491 (592)
Q Consensus 422 ~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~---~-----~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~-- 491 (592)
.+.-+++....+|...++.++.++..+... + ++.|+-.++..+..++.++. ++..-..-+..+.+|...
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~-Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD-HKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 777778889999999999999998876543 2 34566677777777776655 344444555666666532
Q ss_pred CCCchHhHhhhcccCCCchHhHHHHHHHHHHHh-hCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHh
Q psy9904 492 CPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMIT-VNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRT 564 (592)
Q Consensus 492 ~~~~~~p~~~~L~~~~d~~Ek~~a~~~l~~li~-~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~ 564 (592)
....-.|... ....+ +......+..++. .=|..-...+..|+..+-+......+.+..++..|-+.|+
T Consensus 248 ~~~i~~~l~~---~~~~n--~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 248 SGSIQVPLFD---PGMSN--QEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp TT-SSSSSSS---TTT-H--HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTS
T ss_pred cccccccccC---CCCcc--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1111111101 01112 2222233333333 2232222334455555555544445666667777666664
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.43 E-value=0.27 Score=49.80 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhhh--hhhHhhhccCchHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHchhhhhhhhh--hHHH----
Q psy9904 352 IVALDLLSGLAEGLD--MHIDSLVSNSNIMHLLYQCMQDPM--PEVRQSSFALLGDLTKACFSHVHPCIS--DFMP---- 421 (592)
Q Consensus 352 ~~ald~l~~l~~~lg--~~~~~~~~~~~l~~~l~~~l~~~~--~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp---- 421 (592)
..++.+++-++-.+| .....++ ..+.|.|...+.+.. ..+|..++.+||-++-.++.+...... ..|.
T Consensus 104 ~lA~~~l~Ll~ltlg~g~~~~ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~ 181 (309)
T PF05004_consen 104 ALAARALALLALTLGAGEDSEEIF--EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFL 181 (309)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Confidence 457788888877776 4444555 467788888877654 567888888999888776654332221 2333
Q ss_pred HHHhccC--------CCChhHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 422 ILGQNLN--------PDLISVCNNATWAIGEISVKLGE-DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 422 ~l~~~l~--------~~~~~v~~~A~~~Lg~ia~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
......+ .+...+..+|+.+.|-++..++. .+..++...++.|..+|+.++ .+|+-.|..+|+-|-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d--~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD--VDVRIAAGEAIALLY 256 (309)
T ss_pred HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 2211111 12356888999888888877764 477788899999999999876 788888888887664
No 132
>KOG4535|consensus
Probab=96.21 E-value=0.78 Score=47.74 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc-----CCCChhHHHHHHHHHHHHHHhcC--chhhhhHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL-----NPDLISVCNNATWAIGEISVKLG--EDMRRYVPMVIN 462 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l-----~~~~~~v~~~A~~~Lg~ia~~~~--~~~~p~~~~il~ 462 (592)
...||..++..||++.+.+..-..+-+..++..-+..+ -..+.+|+-|||+++|.+..+-. -.-.++.+.+++
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 46799999999999998776555554555554443333 24467899999999999975422 122478888999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 463 QLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 463 ~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.|..++.+-. +-.|+-||+.++...+.
T Consensus 577 ~L~~Lv~~~~-NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 577 ALTSLVTSCK-NFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHhc-cceEeehhhhhhcCCCC
Confidence 9988876532 46788899998887765
No 133
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.17 E-value=0.088 Score=55.33 Aligned_cols=106 Identities=15% Similarity=0.003 Sum_probs=70.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchH
Q psy9904 100 PILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179 (592)
Q Consensus 100 ~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~ 179 (592)
+.+...++|+++.+|.+|+.+||.+... ..+|.|...+.|+++.||.+|.++++.+..- .-..
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------~A~~ 212 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------LAWG 212 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------hHHH
Confidence 4455566799999999999999997642 3445567779999999999999999887431 1111
Q ss_pred HHHHHHHcccc-CCcc------c---hhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 180 PLMTEMLGCMN-GMVP------H---LNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 180 ~ll~~Ll~~l~-~~vq------~---l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
+++... .... +..+ . -+..++.|..+++++. ++..+.++++.+
T Consensus 213 ~l~~~~-~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 213 VCRRFQ-VLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHH-hccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHc
Confidence 111100 0000 0000 0 1477888888888654 888888888865
No 134
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.14 E-value=0.12 Score=47.13 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=94.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHc-hhhhhhhhhhHHHHHHhccCCC-ChhHHHHHHHHHHHHHHhcC----
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKAC-FSHVHPCISDFMPILGQNLNPD-LISVCNNATWAIGEISVKLG---- 450 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~-~~~~~~~l~~llp~l~~~l~~~-~~~v~~~A~~~Lg~ia~~~~---- 450 (592)
.+...+...++++++.-|-.++.+++..+..+ .+-|..+-..++..+++.++.. ...+...|+.+++.|.....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45666778888889999999999999999998 4556577778888888888654 56788899999999876654
Q ss_pred ---chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHh
Q psy9904 451 ---EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLC 500 (592)
Q Consensus 451 ---~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~ 500 (592)
+...|.++.+++.++++++. ....+-+..++..+...+|..+.|+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchH
Confidence 23578899999999998875 34566778888888888888777743
No 135
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.14 E-value=0.28 Score=54.72 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=49.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHH
Q psy9904 380 HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM 459 (592)
Q Consensus 380 ~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~ 459 (592)
+.+.+-++|+++.+|-.|+.+++.+-. ...++.+++.+.++++++++.||.+|+.|++.+-. .+.+ +++.
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~---l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKD---LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHh---hhhc
Confidence 344445556666666666666654421 23455566666666666666666666666665532 2222 2222
Q ss_pred --HHHHHHHHHcCCCCCchHHHHHHHHHHHh
Q psy9904 460 --VINQLIIIINRPNTPKTLLENTAITIGRL 488 (592)
Q Consensus 460 --il~~L~~~l~~~~~~~~v~~na~~~lgrl 488 (592)
....+..++.+++ +.++.||..++..+
T Consensus 165 ~g~~~~l~~l~~D~d--P~Vi~nAl~sl~~i 193 (757)
T COG5096 165 LGLIDILKELVADSD--PIVIANALASLAEI 193 (757)
T ss_pred ccHHHHHHHHhhCCC--chHHHHHHHHHHHh
Confidence 2333333333333 55665665555544
No 136
>KOG2933|consensus
Probab=96.06 E-value=0.052 Score=53.23 Aligned_cols=89 Identities=24% Similarity=0.336 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 177 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~ 177 (592)
.+......+.|.+|...--++..+..+++--++.+.+.+..++..+++.++++...|-.+||.|++.+.+.+... ..+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344344556889999999999999999998888888999999999999999999999999999999999887542 2223
Q ss_pred hHHHHHHHHc
Q psy9904 178 LKPLMTEMLG 187 (592)
Q Consensus 178 l~~ll~~Ll~ 187 (592)
+..++..|+.
T Consensus 168 ld~lv~~Ll~ 177 (334)
T KOG2933|consen 168 LDDLVTQLLH 177 (334)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 137
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.06 E-value=0.023 Score=55.63 Aligned_cols=94 Identities=22% Similarity=0.132 Sum_probs=66.2
Q ss_pred HHHHHHhhc-CCChhHHHHHHHHHHHHHhhch--hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcC-CC
Q psy9904 99 LPILKETLF-HHDWEIKESGILALGAIAEGCM--NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ-PH 174 (592)
Q Consensus 99 l~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~--~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~-~~ 174 (592)
++.+..+++ +.++..++.++.++|..+.... +.+.. -..++.+...|.+|++.||..|++||.+++...... ..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 333444444 5689999999999999775332 22221 358899999999999999999999999988654322 14
Q ss_pred ccchHHHHHHHHccc-cCCcc
Q psy9904 175 DSYLKPLMTEMLGCM-NGMVP 194 (592)
Q Consensus 175 ~~~l~~ll~~Ll~~l-~~~vq 194 (592)
+.|++.+.+.+..+. +..+|
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q 112 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQ 112 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHH
Confidence 557777777766653 54554
No 138
>KOG1837|consensus
Probab=96.05 E-value=4.3 Score=48.49 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCC------CChHHHHHHH-HHHHHHHHHchhhhhhhhhhHHHHH
Q psy9904 352 IVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQD------PMPEVRQSSF-ALLGDLTKACFSHVHPCISDFMPIL 423 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~------~~~~vR~~a~-~~l~~la~~~~~~~~~~l~~llp~l 423 (592)
.++.++.-.++..+.+ .|+|++ .+++.....+ ..+--|..+| .+...+...+..-+.||...++...
T Consensus 1367 ~sV~~~~v~~v~klse~~FRplf-----~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~ 1441 (1621)
T KOG1837|consen 1367 RSVQNKAVAKVLKLSESTFRPLF-----SPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPR 1441 (1621)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3455566666655553 488776 2333333311 1233454444 4666778888889999999877666
Q ss_pred HhccCCCChh----------HHHHHHHHHHHHHHhcC-----chh-hhh---------HHHHHHHHHHHHcCCCCCchHH
Q psy9904 424 GQNLNPDLIS----------VCNNATWAIGEISVKLG-----EDM-RRY---------VPMVINQLIIIINRPNTPKTLL 478 (592)
Q Consensus 424 ~~~l~~~~~~----------v~~~A~~~Lg~ia~~~~-----~~~-~p~---------~~~il~~L~~~l~~~~~~~~v~ 478 (592)
...|..-+.+ --..-+|.+|.++.++- .+. ..| ...++..+++..-.....+.+.
T Consensus 1442 ~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~ 1521 (1621)
T KOG1837|consen 1442 VILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVS 1521 (1621)
T ss_pred HHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHH
Confidence 5444321111 11125677777665531 111 111 1122223333222233345677
Q ss_pred HHHHHHHHHhhhhCCCchHhHhh-hcccCCCc--hHhHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccC-CCchhHHHH
Q psy9904 479 ENTAITIGRLGYVCPHDVAPLCS-SLRNIRDN--EEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWS-TPKEDLKEM 554 (592)
Q Consensus 479 ~na~~~lgrl~~~~~~~~~p~~~-~L~~~~d~--~Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~-~~~~~~~~~ 554 (592)
..++.++++++...++++.|+.. .|...+++ ..|.-|++.+-.++..-...+...+++.+..++.-- +.++++...
T Consensus 1522 ~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~ 1601 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECL 1601 (1621)
T ss_pred HHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHH
Confidence 88899999999888877888543 44444444 346667777777776433445566666666666543 455667777
Q ss_pred HHHHHHHHHhccCh
Q psy9904 555 FHKILHGFRTQVGD 568 (592)
Q Consensus 555 ~~~ll~~~~~~~~~ 568 (592)
.+.+++.+...+|+
T Consensus 1602 ~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1602 CQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHhch
Confidence 88888888888886
No 139
>KOG0946|consensus
Probab=96.02 E-value=0.49 Score=52.08 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhh---------
Q psy9904 294 FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEG--------- 364 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~--------- 364 (592)
+.+..+|..+++.+..... ..-|+-+.+.|+. |..|.+.+..++|.+..+...
T Consensus 41 R~A~rgLKa~srkYR~~Vg-------a~Gmk~li~vL~~-----------D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 41 RDAVRGLKAFSRKYREEVG-------AQGMKPLIQVLQR-----------DYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HcccHHHHHHHhh-----------ccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 4577777777776655321 1223334444543 123566777778877666532
Q ss_pred ------hhhhhHh-hhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh---hhHHHHHHhccCCCChhH
Q psy9904 365 ------LDMHIDS-LVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI---SDFMPILGQNLNPDLISV 434 (592)
Q Consensus 365 ------lg~~~~~-~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l---~~llp~l~~~l~~~~~~v 434 (592)
+|..|.. ++.....+.+++..++..+..||..++.+++.+..+-|.++...+ |.-+..++..|.|....+
T Consensus 103 s~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred chhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhh
Confidence 3433432 333457888999999999999999999999999999887766543 556667777788888889
Q ss_pred HHHHHHHHHHHHHhcCchhhh--hHHHHHHHHHHHHcCCCC-Cc-hHHHHHHHHHHHhhhhCC
Q psy9904 435 CNNATWAIGEISVKLGEDMRR--YVPMVINQLIIIINRPNT-PK-TLLENTAITIGRLGYVCP 493 (592)
Q Consensus 435 ~~~A~~~Lg~ia~~~~~~~~p--~~~~il~~L~~~l~~~~~-~~-~v~~na~~~lgrl~~~~~ 493 (592)
|+.|+..|.++.+..+ .+.. -++.++.+|..++..+-. +- -|.+-+.+-+-.+...+.
T Consensus 183 RNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred chhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 9999999999986554 3443 346889999999987542 22 255666677777766543
No 140
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.99 E-value=5 Score=49.85 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhh----hhhhhHHHHH
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH----PCISDFMPIL 423 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~----~~l~~llp~l 423 (592)
.+++...++|+..++.+-+.++..=. ..++.++.....++++.+-+.||..+..+.......+. ..+..++..+
T Consensus 1197 ~eVrE~ILeCv~qmI~s~~~nIkSGW--ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL 1274 (1780)
T PLN03076 1197 VEIRELIIRCVSQMVLSRVNNVKSGW--KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCL 1274 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCc--HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Confidence 46778899999999988887766544 46788888777888889999999999877754332211 1222333333
Q ss_pred HhccCCC-ChhHHHHH---HHHHHH-HHHhc--------------------------------CchhhhhHHHHHHHHHH
Q psy9904 424 GQNLNPD-LISVCNNA---TWAIGE-ISVKL--------------------------------GEDMRRYVPMVINQLII 466 (592)
Q Consensus 424 ~~~l~~~-~~~v~~~A---~~~Lg~-ia~~~--------------------------------~~~~~p~~~~il~~L~~ 466 (592)
.+-.+.. +.++.-.| +|.++. ++... .+....+.-.++..|..
T Consensus 1275 ~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1275 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred HHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 3222211 12233233 343322 21100 00111233446666666
Q ss_pred HHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--Hh-----------hhcccC----C-----------C--chH---h-
Q psy9904 467 IINRPNTPKTLLENTAITIGRLGYVCPHDVAP--LC-----------SSLRNI----R-----------D--NEE---K- 512 (592)
Q Consensus 467 ~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--~~-----------~~L~~~----~-----------d--~~E---k- 512 (592)
+... .+.+||..|+.++-++...++..+.| |- ..++.. . + +.| +
T Consensus 1355 l~~D--~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl 1432 (1780)
T PLN03076 1355 LSFD--PRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL 1432 (1780)
T ss_pred HhcC--CcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH
Confidence 6654 35889999999999999888877765 32 122110 0 0 111 1
Q ss_pred ----HHHHHHHHHHHhhCchhhhhhHHHHHHHhhcc-CCCchhH----HHHHHHHHHHHHhccChhhHHHHHhcC
Q psy9904 513 ----DSAFRGMCAMITVNPGGVVQEFIFFCDAVASW-STPKEDL----KEMFHKILHGFRTQVGDENWQRFADQF 578 (592)
Q Consensus 513 ----~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~-~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~~~~~l 578 (592)
..|+++++.++...-..+...+..|+..+... .++++.+ ...+.+++.+-...+.++.|..+...|
T Consensus 1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 22777888777654444444444444433322 1233332 257899999888899988999987654
No 141
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.98 E-value=0.86 Score=46.04 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=80.5
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchh-hh---
Q psy9904 380 HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDM-RR--- 455 (592)
Q Consensus 380 ~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~-~p--- 455 (592)
.++..++++.++.+|+.|+.++|-++-.-++....+++ .+.+.++.+...|+..|+.++.++....|..+ ..
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~----l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLP----LFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 35557788889999999999999999876655544444 45555544678999999999999998877432 22
Q ss_pred -----hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 456 -----YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 456 -----~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
....++..+...+.+.+ ..++..++..+.|+....
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~--~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSEN--PELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhcC
Confidence 23468888888888763 678999999999987653
No 142
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.90 E-value=0.014 Score=39.48 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=27.5
Q ss_pred hHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 138 ELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 138 ~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
..+|.|+++|+++++.||..|+|||++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999987
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.84 E-value=1.3 Score=44.84 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHH--HchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC--chhhhhH
Q psy9904 382 LYQCMQDPMPEVRQSSFALLGDLTK--ACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG--EDMRRYV 457 (592)
Q Consensus 382 l~~~l~~~~~~vR~~a~~~l~~la~--~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~--~~~~p~~ 457 (592)
.+..+.++....|+.++..+-.+.. ++...+......++..+.++++....+-+.-|+.++|-++..+| .+....+
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 3445556778999999988777653 34556667778899999999987665556678888999998876 6677788
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 458 ~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
..+.|.|.+++........++..++.|+|-+...+..
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 9999999999987654456677888899988876543
No 144
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.82 E-value=0.17 Score=46.66 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhch-hchhhhHhhHHHH------------HHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 113 IKESGILALGAIAEGCM-NGMVPHLNELVPF------------LITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~------------l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
+|.+|+.+|++++..+. ..+..|.+.++|- +--.+.||+++||.+|+.+|..+-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 45555555555555522 3333444333332 23456799999999999999998765
No 145
>KOG4524|consensus
Probab=95.80 E-value=2.1 Score=48.53 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=74.2
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHH---HHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLT---KACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDM 453 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la---~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~ 453 (592)
+|+.-....+.+++-.+|-.++.++.... ......+.|.+.+..|.++..+...++-+.+.|+.++-.++...|+=+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 34444556677888899999999887654 444677889999999999999999999999999999999988887543
Q ss_pred -hhhHHHHHHHHHHHHcC
Q psy9904 454 -RRYVPMVINQLIIIINR 470 (592)
Q Consensus 454 -~p~~~~il~~L~~~l~~ 470 (592)
+.++..++|.+-..+++
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 34677788877766554
No 146
>KOG1058|consensus
Probab=95.73 E-value=4.3 Score=44.87 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=44.3
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 104 ETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 104 ~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
.-++||+-.+|-+.+.-|..+-| ...+..++|.+..+|..+++.||.-|..|++.+...
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 44667777777666655544333 135788999999999999999999999888877654
No 147
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.54 E-value=0.35 Score=48.42 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=48.3
Q ss_pred ChhHHHH-HHHHHHHHHh-hch-hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 110 DWEIKES-GILALGAIAE-GCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 110 ~~~~R~a-a~~aLg~iae-g~~-~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
.|+...+ +..++.-+.. ... ..+..|++-++|.++..+.|.++.+|..+|.+|..+.+.+..
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 4654443 2255555555 444 678899999999999999999999999999999999987654
No 148
>KOG2933|consensus
Probab=95.44 E-value=0.33 Score=47.76 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=81.2
Q ss_pred ccchHHHHHHHHHHHHHhhhchh---hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904 71 SDWNLRKCSAAALDVLANVFREE---LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~---vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L 147 (592)
.+|...--+...|.+|+..-++. .+..++..+.+.+++....+-++|+++++.|.....+.+...++.++-.|+..-
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka 179 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKA 179 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46888777778888888765543 344455566677788888999999999999999988877777888888888877
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
.+.+..||..|-.+|-.+..+..+
T Consensus 180 ~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 180 SQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred cccchHHHHHHHHHHHHHHhccCh
Confidence 788899999999999998877654
No 149
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.38 E-value=0.19 Score=41.99 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=70.0
Q ss_pred hHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-ch
Q psy9904 378 IMHLLYQCMQDP----MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-ED 452 (592)
Q Consensus 378 l~~~l~~~l~~~----~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~ 452 (592)
++..+-..+.|. ...-|+.++..++.+.+.+++.+..++|+++-.|..++.. ++.|..|+.+...+...++ ++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHH
Confidence 334444444443 3456999999999999999999999999999999999864 4699999999999988887 56
Q ss_pred hhhhHHHHHHHHHHHH
Q psy9904 453 MRRYVPMVINQLIIII 468 (592)
Q Consensus 453 ~~p~~~~il~~L~~~l 468 (592)
+.|.+.+++..+.+.+
T Consensus 90 l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 90 LGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778887777776654
No 150
>KOG2062|consensus
Probab=95.34 E-value=0.79 Score=50.16 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~ 428 (592)
..|-.+.=+++-.+.+.|.. ..+.+|-....|+..-|||.|+-.++-+...+-+..-|-+..|-..+.+.+.
T Consensus 604 HVRyGaA~ALGIaCAGtG~~--------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLK--------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcH--------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh
Confidence 34444445666666677643 1234444455687888999999999999888888888888888888888776
Q ss_pred CCChh--HHHHHHHHHHHH
Q psy9904 429 PDLIS--VCNNATWAIGEI 445 (592)
Q Consensus 429 ~~~~~--v~~~A~~~Lg~i 445 (592)
+.+.+ ++-.|+-+=|-+
T Consensus 676 dKhEd~~aK~GAilAqGil 694 (929)
T KOG2062|consen 676 DKHEDGMAKFGAILAQGIL 694 (929)
T ss_pred hhhhHHHHHHHHHHHhhhh
Confidence 65433 344555444433
No 151
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.27 E-value=2.8 Score=44.68 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHH-HHHHhhcCCChhHHHHHHHHHHHHHhhchhc-hhhhHhhHHHHHHHhcc
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLP-ILKETLFHHDWEIKESGILALGAIAEGCMNG-MVPHLNELVPFLITCLS 148 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~-~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~-i~~~l~~lvp~l~~~L~ 148 (592)
.-+.-|-+|+++||.++..++..-+..++. .+..+++|+.-..|..|.+.+...+..+... -.+..+.+.+.|...|.
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 447889999999999999998766666665 6889999999999999999999999877632 11214567777888888
Q ss_pred CCh
Q psy9904 149 DKK 151 (592)
Q Consensus 149 D~~ 151 (592)
++.
T Consensus 179 ~~~ 181 (441)
T PF12054_consen 179 NPE 181 (441)
T ss_pred CCC
Confidence 553
No 152
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=95.24 E-value=0.024 Score=45.69 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHH
Q psy9904 511 EKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLS 587 (592)
Q Consensus 511 Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 587 (592)
+|..+.-|||.++...|-.+.+.++.++..++++...+..++.++++.|..||....+ .|...-..|.+++.+.|.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkrtH~D-~W~~~~~~Ft~~ql~~l~ 80 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQPIRTTVKKTLSEFKRTHQD-TWHEHKKKFTEDQLEDLE 80 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHHHTST-THHHHGGG--SSTTGGGS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcc-cHHHHHHhCCHHHHHHHH
Confidence 4678999999999999999888899999999988765566899999999999988775 898888888887766554
No 153
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.23 E-value=0.1 Score=43.73 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=59.1
Q ss_pred HHHHHHhhcC----CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcC
Q psy9904 99 LPILKETLFH----HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 99 l~~l~~~l~s----~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
+..+...++| ..-..|..++.+++.+.+-+++.+....|+++-.|...|..+ .+|..|+.+-..|...+.++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 4444455555 456789999999999999888999999999999999999886 78999999988988887653
No 154
>KOG0392|consensus
Probab=95.19 E-value=0.098 Score=60.04 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-.||.+.+.+|+.+-+......+...+.++.+++..++|..|+++++++......-.+.+...++.+++.++.+|.|++-
T Consensus 143 apVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~d 222 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDD 222 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 46999999999999999888778888888888888889999999999998766655566667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9904 153 LVRAITCWTLSRYSHWV 169 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~ 169 (592)
.||..|..++-...+..
T Consensus 223 dv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 223 DVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHhhhhhHHH
Confidence 99999999888777665
No 155
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.16 E-value=5.9 Score=42.93 Aligned_cols=190 Identities=16% Similarity=0.249 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHH-----h
Q psy9904 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFHH--DWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLIT-----C 146 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~--~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~-----~ 146 (592)
+-|.--.+|-.|+.-.-++.-...+..+...+.+. +|..-..-++|+|.|+-...+... .++-.++..++. .
T Consensus 459 lYksmRevLvyLthL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKr 538 (1053)
T COG5101 459 LYKSMREVLVYLTHLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKR 538 (1053)
T ss_pred HHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444556666654333322233444444444555 467778889999999876665433 344444444433 3
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
-+|.+..|.+-.++.+|++-..+.. +-.|+..++..|...| ...+.-|+-.||+++-+.+
T Consensus 539 gKdnKAVvASnIMyvvGQYpRFLka--hw~FLkTVv~KLFEFM------------------hE~HEGvqDMACDtFiKIv 598 (1053)
T COG5101 539 GKDNKAVVASNIMYVVGQYPRFLKA--HWSFLKTVVKKLFEFM------------------HEDHEGVQDMACDTFIKIV 598 (1053)
T ss_pred cCCcchhhecceeeeeccchHHHHH--HHHHHHHHHHHHHHHH------------------hhhhhhHHhhhHHHHHHHH
Confidence 4688888888888999988877753 5678888888777766 2224446667777776665
Q ss_pred hhhc-------cCCcccchHHHHHhh---------hhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHh
Q psy9904 227 HWVV-------SQPHDSYLKPLMTEH---------KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284 (592)
Q Consensus 227 ~~~~-------~~~~~~y~~~~~~~~---------~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~ 284 (592)
..++ .....|++..++... ......|.|.|.+...+...-.....+-.+|......|.
T Consensus 599 qKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~ 672 (1053)
T COG5101 599 QKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWL 672 (1053)
T ss_pred HhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHH
Confidence 5443 111234443333211 112356777777665544322111334445554445553
No 156
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.00 E-value=0.22 Score=40.49 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
+..+...++|+.+.+|--|+.-|..+.+... ....+.+.++..+...|+|+++.|--.|..+|+.++.+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3445566789999999999999999998776 2335689999999999999999999999999999998754
No 157
>KOG1078|consensus
Probab=95.00 E-value=7.5 Score=43.25 Aligned_cols=144 Identities=23% Similarity=0.228 Sum_probs=70.3
Q ss_pred hhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhh
Q psy9904 133 VPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKA 212 (592)
Q Consensus 133 ~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~ 212 (592)
......++|++-.+|++....|..-|..++..+...... .+.|.+ ..+..++..++.
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r-----~l~pav------------------s~Lq~flssp~~ 296 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR-----ELAPAV------------------SVLQLFLSSPKV 296 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh-----hcchHH------------------HHHHHHhcCcHH
Confidence 445667778888888877777777777666665432211 111111 123334455566
Q ss_pred HHHHHHHhhhhhhhhhhccCC--cccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCC
Q psy9904 213 LVRAITCWTLSRYSHWVVSQP--HDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDED 290 (592)
Q Consensus 213 ~vr~~a~~~L~~~a~~~~~~~--~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~ 290 (592)
.+|-.|..+|.+.|...+... ...-+.+++. ..|+-+..-||.++-. .|.+ .-++.+|...-.....++|+-
T Consensus 297 ~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt-d~NrsIat~AITtLLK-TG~e----~sv~rLm~qI~~fv~disDeF 370 (865)
T KOG1078|consen 297 ALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT-DSNRSIATLAITTLLK-TGTE----SSVDRLMKQISSFVSDISDEF 370 (865)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchhHHhhhc-ccccchhHHHHHHHHH-hcch----hHHHHHHHHHHHHHHhccccc
Confidence 777777777777765443211 1111222221 2232233445555433 2333 234555555444333344433
Q ss_pred ccchHHHHHHHHHHHHH
Q psy9904 291 KDLFPLLECLSSVATAL 307 (592)
Q Consensus 291 ~~~~~~~e~l~~ia~~~ 307 (592)
+ ..+.+++.+++..+
T Consensus 371 K--ivvvdai~sLc~~f 385 (865)
T KOG1078|consen 371 K--IVVVDAIRSLCLKF 385 (865)
T ss_pred e--EEeHHHHHHHHhhc
Confidence 2 23455555555443
No 158
>KOG4535|consensus
Probab=94.94 E-value=4.5 Score=42.38 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHch--hhhhhhhhhHHHH
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM-----QDPMPEVRQSSFALLGDLTKACF--SHVHPCISDFMPI 422 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l-----~~~~~~vR~~a~~~l~~la~~~~--~~~~~~l~~llp~ 422 (592)
.+..+...++.+.+.+..-..+-+ ..+++.-+..+ -.....||-.++..+|++.++-- =+-.++-+.+++.
T Consensus 500 V~~navraLgnllQvlq~i~~~~~--~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 500 VKSNAVRALGNLLQFLQPIEKPTF--AEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhHHHHHHhhHHHHHHHhhhccH--HHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 445666666666655542211111 12222222211 12356799999999999987532 2234667788888
Q ss_pred HHhccCC-CChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcC
Q psy9904 423 LGQNLNP-DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINR 470 (592)
Q Consensus 423 l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~ 470 (592)
+...+.+ .+++||.+|..+|..-+.. +++..+++-.+..++.+|..
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~r--e~~~d~~~Lsw~~lv~aLi~ 624 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGKR--EQYGDQYALSWNALVTALQK 624 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCCc--ccchhHHhHHHHHHHHHHHH
Confidence 8777654 5789999998888665433 34455666666666666654
No 159
>KOG0414|consensus
Probab=94.94 E-value=0.23 Score=56.93 Aligned_cols=142 Identities=15% Similarity=0.257 Sum_probs=99.9
Q ss_pred hhhhhHHHHHHhccC----CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 414 PCISDFMPILGQNLN----PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 414 ~~l~~llp~l~~~l~----~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
..+..+.|.+.+..+ ..+++.+.+|.-+||.+..- . ..|...-+|.|+.++.... .+.++.|+..++|.++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-S---a~fces~l~llftimeksp-~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-S---AEFCESHLPLLFTIMEKSP-SPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHhcCC-Cceeeecchheccchh
Confidence 356778888887763 34688999999999987532 1 2467777888888888533 3789999999999999
Q ss_pred hhCCCchHhHhhhccc-CCCchH--hHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q psy9904 490 YVCPHDVAPLCSSLRN-IRDNEE--KDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFR 563 (592)
Q Consensus 490 ~~~~~~~~p~~~~L~~-~~d~~E--k~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~ 563 (592)
...|..+-||-++|-. +.|..- |.+|+..+..|+..+--.+-..+...... ..+|+++++.+.+++.+.+.
T Consensus 990 v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~c---l~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 990 VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALC---LEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHH---hcCCcHHHHHHHHHHHHHhh
Confidence 9999999999887743 444332 88999999998876554433333322222 23667777777666665544
No 160
>KOG2081|consensus
Probab=94.83 E-value=0.21 Score=52.89 Aligned_cols=107 Identities=24% Similarity=0.387 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc--CCh
Q psy9904 75 LRKCSAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS--DKK 151 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~--D~~ 151 (592)
-|...+..+.-++-..| ++.+..+.-.+.+ ..+.|..-+|+++.+.+++..... +-++++|-+++.+. +..
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~----~e~~i~pevl~~i~nlp~Q 441 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSP----EENTIMPEVLKLICNLPEQ 441 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCc----cccchHHHHHHHHhCCccc
Confidence 56667777766676666 5666666666655 567899999999999999987663 34455555555443 233
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l 189 (592)
..+|++++--+|++++|+.. +.+.+.+++.-+...+
T Consensus 442 ~~~~~ts~ll~g~~~ew~~~--~p~~le~v~~~~~~~~ 477 (559)
T KOG2081|consen 442 APLRYTSILLLGEYSEWVEQ--HPELLEPVLRYIRQGL 477 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHh
Confidence 44999999999999999975 4566666666555443
No 161
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.81 E-value=0.11 Score=42.36 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHh
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHH--DWEIKESGILALGAIAE 126 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~--~~~~R~aa~~aLg~iae 126 (592)
..|.+|.-||..|+.++..++. .+-|.+...+.+.+.|+ .+..+++|+.+|.++..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999999984 56788888887777754 56799999999999854
No 162
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.78 E-value=0.35 Score=43.84 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=55.0
Q ss_pred hHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 378 IMHLLYQCMQDPM-PEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 378 l~~~l~~~l~~~~-~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
.+..++..++|++ ......++.++-.+.+..+....||+++++|.+++.++....+.++.-.+.|+.+..
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4556667777654 445667788888888888888899999999999999987766888888888887753
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.72 E-value=0.21 Score=41.79 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=58.1
Q ss_pred HHHHHHHhhcCCC----hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 98 LLPILKETLFHHD----WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 98 ll~~l~~~l~s~~----~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
++..+...+.|.+ -..|+.++.+++.+.+.++..+...+|++.-.|...|..+ ..|..|+.|...+...+.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCCH
Confidence 3444455555544 3579999999999999999999999999999999999865 4899999888888887754
No 164
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.69 E-value=0.87 Score=46.42 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhh
Q psy9904 294 FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLV 373 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~ 373 (592)
..++.+++.++..+|..+.|+++.++..++......+.+ + ..+-+++|.....++..+.+..-..+..+=
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~------d----~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp 159 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINK------D----FEEYPEHRVNFFKLLRAINEHCFPALLQLP 159 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSS------T----SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh------h----hhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 468999999999999999999998887666544443311 1 122367888888888888776433322110
Q ss_pred c--cCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh
Q psy9904 374 S--NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS 410 (592)
Q Consensus 374 ~--~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~ 410 (592)
. -..++..+..++++.+.+|-..++.++.++...+..
T Consensus 160 ~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 160 PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 0 035678889999999999999999999999877654
No 165
>KOG0392|consensus
Probab=94.62 E-value=0.38 Score=55.53 Aligned_cols=134 Identities=17% Similarity=0.268 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh-hhhhhhHHHHHHhccCCC
Q psy9904 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV-HPCISDFMPILGQNLNPD 430 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~-~~~l~~llp~l~~~l~~~ 430 (592)
...++.+.+++.-+|..+.|.+ +.++.++.|.......+|-+++.+++.+++..-.+. ...+..++|.+ ..+ +
T Consensus 794 ~~s~~vf~s~~~~m~s~l~~~~---~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll-~~~--~ 867 (1549)
T KOG0392|consen 794 LSSFEVFNSLAPLMHSFLHPLG---SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL-GDL--D 867 (1549)
T ss_pred hhhHHHHHHHHHhhhhhhhhhh---hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cch--h
Confidence 4567777788877888887744 578899999999999999999999999997654443 33334444433 222 1
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
...-|..|.-.++.+...+...+.||.+-+++.|...++... ..+++.+..++.+++..-|
T Consensus 868 ~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~--d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 868 KFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQI--DSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccch--HHHHHHHHHHHHHHhcccc
Confidence 233355666677777777777889999999999999887644 6788888888888876544
No 166
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.47 E-value=0.38 Score=54.10 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=82.5
Q ss_pred hHHHHHHHhCC----CChHHHHHHHHHHHHHHHHchhh----------hh----hhhhhHHHHHHhccCCCChhHHHHHH
Q psy9904 378 IMHLLYQCMQD----PMPEVRQSSFALLGDLTKACFSH----------VH----PCISDFMPILGQNLNPDLISVCNNAT 439 (592)
Q Consensus 378 l~~~l~~~l~~----~~~~vR~~a~~~l~~la~~~~~~----------~~----~~l~~llp~l~~~l~~~~~~v~~~A~ 439 (592)
++..+...++. .++.+|.+++-.+|.++..+-.. .. .|++.+...+-...+..+...+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 44444444432 35789999999999888544222 22 23444444444444455667788899
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHhhhhCCCchHh-HhhhcccCCCchH-hHHHH
Q psy9904 440 WAIGEISVKLGEDMRRYVPMVINQLIIIINRP-NTPKTLLENTAITIGRLGYVCPHDVAP-LCSSLRNIRDNEE-KDSAF 516 (592)
Q Consensus 440 ~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~-~~~~~v~~na~~~lgrl~~~~~~~~~p-~~~~L~~~~d~~E-k~~a~ 516 (592)
.+||.+.. +.+++.+.+.+... ..+..++-.|++++.++...+|+.+.+ ++..+.+..++.| |..||
T Consensus 512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 99998752 23556666666655 456788999999999999888887777 5666667666666 55565
Q ss_pred HHHHHHHhhCch
Q psy9904 517 RGMCAMITVNPG 528 (592)
Q Consensus 517 ~~l~~li~~~p~ 528 (592)
..| +..+|.
T Consensus 582 ~~l---m~~~P~ 590 (618)
T PF01347_consen 582 LIL---MRCNPS 590 (618)
T ss_dssp HHH---HHT---
T ss_pred HHH---HhcCCC
Confidence 443 456675
No 167
>KOG1851|consensus
Probab=94.38 E-value=15 Score=44.10 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=108.8
Q ss_pred hhHHHHHH-hccCCCChhHHHHHHHHHHHHHHhc-CchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 417 SDFMPILG-QNLNPDLISVCNNATWAIGEISVKL-GEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 417 ~~llp~l~-~~l~~~~~~v~~~A~~~Lg~ia~~~-~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
+.++..+. ....++...+|..++.-+....-.. -.........|...+...+.+.+ .++++.|+.++.-+....-.
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~--i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ--IEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH--HHHHHHHHHHHHHHHhcccc
Confidence 34444444 2345667889988776666543221 12345667788888888887654 67999999988877654322
Q ss_pred chHh-----HhhhcccCCCchH-hHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccCh
Q psy9904 495 DVAP-----LCSSLRNIRDNEE-KDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGD 568 (592)
Q Consensus 495 ~~~p-----~~~~L~~~~d~~E-k~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~ 568 (592)
...+ .-..+.......+ ...|+-|++.++..-|-.+...++.++..+.+|...+..++++..+.+..|+....+
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARESAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222 1111111111222 345899999999988987777788999999999877788999999999999988875
Q ss_pred hhHHHHHhcCCH
Q psy9904 569 ENWQRFADQFPD 580 (592)
Q Consensus 569 ~~~~~~~~~l~~ 580 (592)
+|..-=.+|..
T Consensus 1683 -~W~~~k~~f~e 1693 (1710)
T KOG1851|consen 1683 -TWREHKQSFNE 1693 (1710)
T ss_pred -hhhhhhhccCc
Confidence 79876666553
No 168
>KOG2062|consensus
Probab=94.31 E-value=0.14 Score=55.75 Aligned_cols=117 Identities=22% Similarity=0.192 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 177 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~ 177 (592)
.=+++.+++.|.++-.|.+++++++.---|.+.. .-+..++++ ..+|.+-.||.+|.-+||-++-. ..+.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn--kair~lLh~---aVsD~nDDVrRaAVialGFVl~~-----dp~~ 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN--KAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFR-----DPEQ 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch--hhHHHhhcc---cccccchHHHHHHHHHheeeEec-----Chhh
Confidence 3456778888999999999999887655444421 122333333 36789999999999999976531 2334
Q ss_pred hHHHHHHHHccccCCccc--------------hhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 178 LKPLMTEMLGCMNGMVPH--------------LNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 178 l~~ll~~Ll~~l~~~vq~--------------l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
++.++.-|-..-|++|.+ +.+-+..|.++.+|+..+||.-|+-++..
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 566666666655776651 25667788888888888888887777654
No 169
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.14 Score=54.13 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 109 HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 109 ~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
-++.+|.+...|||-.+.|.+.. ..+..|-.+..|+...||++||-++|.+..
T Consensus 598 hN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 598 HNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred cchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 34555665556665555544431 223333344456666666666666555543
No 170
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.22 E-value=0.34 Score=53.98 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred chHHHHHHHhCC----CChHHHHHHHHHHHHHHH-Hchhh-------hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHH
Q psy9904 377 NIMHLLYQCMQD----PMPEVRQSSFALLGDLTK-ACFSH-------VHPCISDFMPILGQNLNPDLISVCNNATWAIGE 444 (592)
Q Consensus 377 ~l~~~l~~~l~~----~~~~vR~~a~~~l~~la~-~~~~~-------~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ 444 (592)
.++..+...+++ ....+|.+++-.+|.++. .|... ...+++.+...+-.+.+..+...+..++.+||.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 355555555553 356899999999999986 34221 122333333333333344455567788899987
Q ss_pred HHHhcCchhhhhHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHhhhhCCCchHh-HhhhcccCCCchH-hHHHHHHHHH
Q psy9904 445 ISVKLGEDMRRYVPMVINQLIIIIN-RPNTPKTLLENTAITIGRLGYVCPHDVAP-LCSSLRNIRDNEE-KDSAFRGMCA 521 (592)
Q Consensus 445 ia~~~~~~~~p~~~~il~~L~~~l~-~~~~~~~v~~na~~~lgrl~~~~~~~~~p-~~~~L~~~~d~~E-k~~a~~~l~~ 521 (592)
+... ..++.+.+.+. +...+..++-.|++++.+++..+|..+.+ ++..+.+..+..| |..|+..|
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~l-- 540 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVL-- 540 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHH--
Confidence 6421 23333344443 33445678999999999999999988877 5566666555555 65565544
Q ss_pred HHhhCchh
Q psy9904 522 MITVNPGG 529 (592)
Q Consensus 522 li~~~p~~ 529 (592)
+..+|..
T Consensus 541 -m~t~P~~ 547 (574)
T smart00638 541 -METKPSV 547 (574)
T ss_pred -HhcCCCH
Confidence 3556753
No 171
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.21 E-value=0.36 Score=49.65 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=66.7
Q ss_pred HHHHHHhhhc-hhhhHhHHHHHHHhhcC--C-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc----------
Q psy9904 82 ALDVLANVFR-EELLPVLLPILKETLFH--H-DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL---------- 147 (592)
Q Consensus 82 ~L~~la~~~~-~~vl~~ll~~l~~~l~s--~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L---------- 147 (592)
+|..|.+.-| ..++|.+..++.+.+.. . ++..=...+....++...-.-.+.+|+.+++|.++.++
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 5666666666 45667777766654432 2 45555556666667776666678899999999999988
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcC
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
.+.+|.+|.-|+..|+.++..+...
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCC
Confidence 3567999999999999999887653
No 172
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.15 E-value=0.36 Score=43.79 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=73.1
Q ss_pred HhhhccCchHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhh---------------------------------hh
Q psy9904 370 DSLVSNSNIMHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVH---------------------------------PC 415 (592)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~---------------------------------~~ 415 (592)
.||..-+++++.++..++.+ +.++|+.++.++|-|...-+-..+ .|
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 47776678999999998765 589999999999988632111000 01
Q ss_pred -hhhHHHHHHhccCCCCh-hHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 416 -ISDFMPILGQNLNPDLI-SVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 416 -l~~llp~l~~~l~~~~~-~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
..-.+..|++.++|... +-...++.++-.|....|....||+++++|.++..+++.. .+.++....-++.+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~--~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP--DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 11122333333443322 2233556666666666666667888888888888887544 366666666666554
No 173
>KOG2160|consensus
Probab=94.14 E-value=2.2 Score=43.10 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHHHHHchhh--hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSH--VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLII 466 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~--~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~ 466 (592)
+.+-|+.|+.-|-.+++.+... +.+ + ..+..++..++..+..+|..|+|.+|.++.+-+..-...++ ..++.|+.
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~-~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLIS-L-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhh-c-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 5677889999999998887542 322 2 24444555888899999999999999999876532222222 47888888
Q ss_pred HHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 467 IINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 467 ~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
++..+ .+..++-+|..||+-++..++.
T Consensus 174 ~ls~~-~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 174 ILSSD-DPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHccC-CCchHHHHHHHHHHHHHhcCcH
Confidence 88853 4678889999999999988764
No 174
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.10 E-value=0.13 Score=46.62 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHc
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIIN 469 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~ 469 (592)
.-++|++||.++..+...+...+. +..++..+...+.| +++++.-++-.+..++...+..+.+.++.+.+.+-..++
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999998877664 67789999999999 889999999999999887777777778878777777775
Q ss_pred C
Q psy9904 470 R 470 (592)
Q Consensus 470 ~ 470 (592)
.
T Consensus 117 ~ 117 (169)
T PF08623_consen 117 K 117 (169)
T ss_dssp -
T ss_pred c
Confidence 3
No 175
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.06 E-value=0.47 Score=43.06 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHhhhchh-hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc---
Q psy9904 73 WNLRKCSAAALDVLANVFREE-LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS--- 148 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~-vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~--- 148 (592)
..+||+|..|+..+-..+... -+..++..+...+.| +..+|--+.+.|..++..++..+.++++.+++.+-..|+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 449999999999998877653 356779999999999 899999999999999999999999999999999988884
Q ss_pred -CC--------hHHHHHHHHHHHHHHHHHhh
Q psy9904 149 -DK--------KALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 149 -D~--------~~~VR~~a~~aL~~l~~~~~ 170 (592)
+. ......+++.++..+...+.
T Consensus 120 k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 120 KENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp -TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 21 12233455666666655443
No 176
>KOG0567|consensus
Probab=94.04 E-value=1.7 Score=42.07 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
.|.-+.++|+.|+. ++.++.|.+.++|+.+-||+++...|.-+-...+..|
T Consensus 236 VRhEaAeALGaIa~------------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 236 VRHEAAEALGAIAD------------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred HHHHHHHHHHhhcC------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 45566666666643 4678889999999999999998888866654444444
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.01 E-value=0.63 Score=50.49 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=73.6
Q ss_pred chHHHHHHHhCC----CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQD----PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~----~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
.+-|++.+...+ .++.+..+|+-.|..+.-...+ |...-+|.++..+. .+.|.+|+||+-++|+++..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~----fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vc--- 964 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE----FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVC--- 964 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhCCCcceeccceeecccccee---
Confidence 344455554443 5678888888888776544333 34445566666654 57889999999999998764
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 452 DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 452 ~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
|...++....-|...|.+++ ..|+.++.-++.-+....
T Consensus 965 -fN~~~de~t~yLyrrL~De~--~~V~rtclmti~fLilag 1002 (1128)
T COG5098 965 -FNTTADEHTHYLYRRLGDED--ADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred -hhhhhHHHHHHHHHHhcchh--hHHHHHHHHHHHHHHHcc
Confidence 34456666667777777655 789999999999887654
No 178
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.93 E-value=0.48 Score=38.46 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=67.5
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 378 IMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 378 l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
.++.++..++|+.+.+|--++..|..+.+.-. .....++.++..++..++++++-|--||+.++..++...+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----- 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----- 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----
Confidence 35667778889999999999999999998755 233457889999999999999889999999999999765543
Q ss_pred HHHHHHHHHHHcC
Q psy9904 458 PMVINQLIIIINR 470 (592)
Q Consensus 458 ~~il~~L~~~l~~ 470 (592)
+++.|++...+
T Consensus 78 --vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 --VLPILLDEYAD 88 (92)
T ss_pred --HHHHHHHHHhC
Confidence 55666655543
No 179
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.80 E-value=0.76 Score=47.34 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHchhhhhhhhhhHHHHHHhcc----------CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy9904 397 SFALLGDLTKACFSHVHPCISDFMPILGQNL----------NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII 466 (592)
Q Consensus 397 a~~~l~~la~~~~~~~~~~l~~llp~l~~~l----------~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~ 466 (592)
.+.++..|...-.=.+.||+-.++|.++.++ .++.+.+|.-|+..++.++..++......-+.++..+.+
T Consensus 237 lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k 316 (343)
T cd08050 237 LMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLK 316 (343)
T ss_pred HHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 3344444444334467899999999999886 234678999999999999999887655566677888888
Q ss_pred HHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 467 IINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 467 ~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.+.++..+......|+..++.+|.
T Consensus 317 ~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 317 ALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHcCCCCCcchhhHHHHHHHHhCc
Confidence 888776556667888888888873
No 180
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.65 E-value=13 Score=40.56 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-...+-|+.-|......||+ .-...+..+..++.|++..+|..|+..|..++..-+ .|++.+..+|.++|...++
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccH
Confidence 45788888989988888874 233445555566689999999999999998887655 4788999999999998888
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9904 153 LVRAITCWTLSRYSHW 168 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~ 168 (592)
..+.++-++|-.+...
T Consensus 111 ~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888776653
No 181
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.56 E-value=12 Score=39.96 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHhhchhchhhhHhhHHH-HHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc
Q psy9904 111 WEIKESGILALGAIAEGCMNGMVPHLNELVP-FLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 111 ~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp-~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l 189 (592)
++.|-+|..|||.++...+. +-+..++. .|..+|++++..-|..|+-.+..++............+.+...|...+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 67899999999999987653 23445554 699999999999999999999988887654322221233444444444
Q ss_pred -cCCccchhhhHHHHHHhcCchhhHHHHH
Q psy9904 190 -NGMVPHLNELVPFLITCLSDKKALVRAI 217 (592)
Q Consensus 190 -~~~vq~l~~l~p~l~~il~d~~~~vr~~ 217 (592)
++....+.++.+++..+..+-..++..+
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f 206 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATF 206 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344467999999988876555555554
No 182
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=93.56 E-value=0.12 Score=41.60 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q psy9904 112 EIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 112 ~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~ 169 (592)
..|++|+++|+++....+-.+-+++|+++..|....+| ...|+.++-.||+.|=..-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 57999999999999999987888999999999999998 4678888899999887653
No 183
>KOG1293|consensus
Probab=93.33 E-value=2 Score=46.67 Aligned_cols=136 Identities=17% Similarity=0.255 Sum_probs=95.5
Q ss_pred ChhHHHHHHHHHHHHHhhhh---hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLD---MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPI 422 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg---~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~ 422 (592)
|.+++.+++.++..+.+.+. ..+ ....++..+++.+.+++..|..+++++|.++.--++..=..|+. ..+..
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~----~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGL----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCC----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 56788888888877766543 332 22467788888889999999999999999998766554444554 57888
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHhcCch--hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Q psy9904 423 LGQNLNPDLISVCNNATWAIGEISVKLGED--MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRL 488 (592)
Q Consensus 423 l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~--~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl 488 (592)
+...+.+..+.+|.++.|+|-.+.-...+. +.++-.--...+....++++ ..|.+.+---+..+
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d--~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPD--WAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCC--HHHHHHHHHHHHHh
Confidence 888899999999999999999988766643 33333333344445555565 66766665444444
No 184
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.18 E-value=0.96 Score=41.78 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHH-chhhhhhhhhhHHHHH-----------Hhc-cCCCChhHHHHHHHHHHHHHHhcC---------
Q psy9904 393 VRQSSFALLGDLTKA-CFSHVHPCISDFMPIL-----------GQN-LNPDLISVCNNATWAIGEISVKLG--------- 450 (592)
Q Consensus 393 vR~~a~~~l~~la~~-~~~~~~~~l~~llp~l-----------~~~-l~~~~~~v~~~A~~~Lg~ia~~~~--------- 450 (592)
||+.|+.+|+.+++. -+..+..|.+.++|.- +.. +.|+++++|..|+.++..+-...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 799999999999999 4556777777777665 111 357788999999999988865431
Q ss_pred ----chhhhh-------HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 451 ----EDMRRY-------VPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 451 ----~~~~p~-------~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
..|.++ +.++-..|+..|+.+. ...+.-....|++-+....|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCC
Confidence 123332 2223334444455443 23444466666766666655
No 185
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.13 E-value=2.7 Score=37.27 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS 148 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~ 148 (592)
.+|.+ ....-|.+... +.--...+..|...+++.++.+...|+..|.+++..|+..+...+ ..++..+.+.++
T Consensus 16 ~dw~~---il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~ 90 (144)
T cd03568 16 ENWGL---ILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN 90 (144)
T ss_pred cCHHH---HHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc
Confidence 35765 23334444432 122245677777888999999999999999999999997655443 457777888887
Q ss_pred C-ChHHHHHHHHHHHHHHHHHhhc
Q psy9904 149 D-KKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 149 D-~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
+ .++.|+.-.+..+..-++.+..
T Consensus 91 ~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 91 DRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCC
Confidence 7 6889999988888887776654
No 186
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.07 E-value=0.17 Score=34.13 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=26.7
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 418 DFMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 418 ~llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
..+|.|++.+++.+.+++.+|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999986
No 187
>KOG2005|consensus
Probab=92.96 E-value=3.1 Score=45.25 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=54.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 165 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l 165 (592)
..-+..+.+++.+.+..++-.|++++|-...|..+. .+..+-.|...+..++..+|.+|...||--
T Consensus 414 d~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne----~dpalALLsdyv~~~~s~~ri~aIlGLgla 479 (878)
T KOG2005|consen 414 DKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE----CDPALALLSDYLQSSSSIHRIGAILGLGLA 479 (878)
T ss_pred hhhHHHHHHHhhcCCchhhhccceeeeeeccccccc----cCHHHHHHHHhccCCCceeehHHhhhhHHh
Confidence 456888899999998889999999999888776543 456777888889999999999999998854
No 188
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.54 Score=49.85 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=44.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh-ccCChHHHHHHHHHHHHHHH
Q psy9904 101 ILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC-LSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 101 ~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~-L~D~~~~VR~~a~~aL~~l~ 166 (592)
++.+++.|.++-.|.+++++++..--|.+. ..++..+++. .+|.+-.||.+|.-|||-+|
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc 580 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVC 580 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeE
Confidence 567778888999999999988876555553 1344444444 67888899999999999766
No 189
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.79 E-value=4.2 Score=40.67 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=59.9
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhch----hh--hHhhHHHHHHHhcc--------CChHHHHHHH
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGM----VP--HLNELVPFLITCLS--------DKKALVRAIT 158 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i----~~--~l~~lvp~l~~~L~--------D~~~~VR~~a 158 (592)
+.++-++|.+-..+-|.+..+|.-|+..|..+.+.+.... .. ..+-+-+.+..+|. +.+..+-..|
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 6788899999899999999999999999999999887432 32 24445566666666 6778888888
Q ss_pred HHHHHHHHHHh
Q psy9904 159 CWTLSRYSHWV 169 (592)
Q Consensus 159 ~~aL~~l~~~~ 169 (592)
.-||-.++...
T Consensus 195 y~~L~~L~~~~ 205 (282)
T PF10521_consen 195 YPALLSLLKTQ 205 (282)
T ss_pred HHHHHHHHHhh
Confidence 88888887654
No 190
>KOG1517|consensus
Probab=92.65 E-value=1.2 Score=50.60 Aligned_cols=96 Identities=23% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhhc---hhhh-HhHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchh-chhhhHhhHHHHHHHhcc
Q psy9904 75 LRKCSAAALDVLANVFR---EELL-PVLLPILKETLFH-HDWEIKESGILALGAIAEGCMN-GMVPHLNELVPFLITCLS 148 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~---~~vl-~~ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~-~i~~~l~~lvp~l~~~L~ 148 (592)
-|-.||-.|+++..+++ +..+ ..++......+++ +.|-.|.=.+++||.+=+.... ...---..-...|+..|+
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 68888999999999886 2333 5677766677787 4799999999999998776542 111112335566788999
Q ss_pred CChHHHHHHHHHHHHHHHHHhh
Q psy9904 149 DKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
|+-|.||.+|..|||.|.....
T Consensus 653 D~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred CccHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999987653
No 191
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.19 E-value=8.3 Score=38.88 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=67.9
Q ss_pred hhhHHHHHH-hccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 416 ISDFMPILG-QNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 416 l~~llp~l~-~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
+..++..++ .+++..+..||+.|+.+||-.+.--+. ...+.++.+...++.. +..++..|+.++..+...++-
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKD--DEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCc
Confidence 345665444 677778889999999999998865443 3334445555555433 478999999999999988763
Q ss_pred chH-------------hHhhhcccC--CCchH-hHHHHHHHHHHHhh
Q psy9904 495 DVA-------------PLCSSLRNI--RDNEE-KDSAFRGMCAMITV 525 (592)
Q Consensus 495 ~~~-------------p~~~~L~~~--~d~~E-k~~a~~~l~~li~~ 525 (592)
.+. .+...+... .++.+ +..|..|+|+|.-.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 211 122222221 11323 66799999999964
No 192
>KOG0567|consensus
Probab=92.18 E-value=0.52 Score=45.41 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=48.7
Q ss_pred hHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 97 VLLPILKETLFH--HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 97 ~ll~~l~~~l~s--~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
..+|.+.+.|.+ .++.+|+-|..|||.|+. ++.++.|.+.+.|+.+.||..+..+|..+-
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 346666666654 578999999999999985 467788889999999999999888888654
No 193
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.12 E-value=3 Score=40.92 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=87.3
Q ss_pred hHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC--ch
Q psy9904 378 IMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNPDLISVCNNATWAIGEISVKLG--ED 452 (592)
Q Consensus 378 l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~--~~ 452 (592)
-++.++..|+ ..++.+++.+..+++..+..-.. ...+. ..++.+.+.++++++.+|..|+|++..++.... ..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3455666666 45789999999999998654322 12222 478889999999999999999999998875543 23
Q ss_pred hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC--CchHhHhhhc---ccCCCchHhHHHHHHHHHHHh
Q psy9904 453 MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP--HDVAPLCSSL---RNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 453 ~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~--~~~~p~~~~L---~~~~d~~Ek~~a~~~l~~li~ 524 (592)
++.|++.+...+.. ...+..+...+...|+.|..... ..++..+..+ ....+..-|..+.+.|..|..
T Consensus 91 Ik~~i~~Vc~~~~s----~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVS----SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 45555555544432 22345677777788888865432 1233322222 112333336667776666554
No 194
>KOG2137|consensus
Probab=92.10 E-value=5.5 Score=43.95 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhc-
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQN- 426 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~- 426 (592)
++.....++-+..|.+.+..+.. . +.|+++|+.++++.+..+...++..+..+++.+.-.+. =..++|.+.+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~--~--~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~ 437 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEV--K--EKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLA 437 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHH--H--HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcch
Confidence 34456677888888888875421 2 57899999999999999999999999999988763322 13466666543
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 427 LNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 427 l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
+......|+.|++-|+|.++..+.
T Consensus 438 ~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 438 FKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred hcccchHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999986653
No 195
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.10 E-value=0.63 Score=44.30 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=53.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
+.+.+.+.++++|++...|.+|+.++-..... .+.+.++..+...+.|++..||.+..|+|..++.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 67888999999999988888887665433332 5678899999999999999999999999999874
No 196
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.05 E-value=4.8 Score=35.19 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=63.6
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHhh
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSDK--KALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D~--~~~VR~~a~~aL~~l~~~~~ 170 (592)
-...+..|...++++++.+..-|+..|..++..|+..+...+ ..++..+...++++ .+.||..+...+..-+..+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 345677788888999999999999999999999997554333 44777777777765 34599998888888888775
Q ss_pred cCCCccchHHH
Q psy9904 171 SQPHDSYLKPL 181 (592)
Q Consensus 171 ~~~~~~~l~~l 181 (592)
....-+++..+
T Consensus 115 ~~~~~~~i~~~ 125 (133)
T smart00288 115 NDPDLSQIVDV 125 (133)
T ss_pred CCCCchHHHHH
Confidence 43333333333
No 197
>KOG2149|consensus
Probab=91.99 E-value=1.8 Score=44.42 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-chhhhhH
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYV 457 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~ 457 (592)
+.-++..+++.+..||+.|+.-|-++....+.....++-.+++.+...+.|++..||...+..+-.+..... +.+.|++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 445567778999999999999999999888887777788888888888889999999988887777554443 5578999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 458 ~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
.-+++.+...+.+.. ..++.-+...+..+...+|..
T Consensus 140 ~l~~~yi~~AMThit--~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 140 SLLMPYISSAMTHIT--PEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHHhhcc--HHHHHhhHHHHHHHHHHcChH
Confidence 999998888887643 678888888888888888754
No 198
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=91.87 E-value=0.84 Score=40.41 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh----------------chhhhHh
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN----------------GMVPHLN 137 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~----------------~i~~~l~ 137 (592)
-+|.--+.++..++..--+.-+|.+++.+.+.+++ +...++.++..|..+.|...+ .+..+.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 36777888999999866555688888887777776 588888999999998876543 2445567
Q ss_pred hHHHHHHHhccCCh----HHHHHHHHHHHHHHHHHhh
Q psy9904 138 ELVPFLITCLSDKK----ALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 138 ~lvp~l~~~L~D~~----~~VR~~a~~aL~~l~~~~~ 170 (592)
.++.++.+.|.... ..+...+..+++.+..|+.
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 77777777776543 6777778888887777654
No 199
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=91.76 E-value=0.24 Score=33.00 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.7
Q ss_pred hHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 138 ELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 138 ~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
..+|.++++|+++++.++..|+|+|++++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788888888889999999999999986
No 200
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=16 Score=39.17 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=51.7
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
...++.+.+++-......+-.|++.+|.-.-+..+ -.+..+-.+-+.|+.++...+.+|...||....
T Consensus 412 d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~----E~~palalLs~yl~s~s~k~~~aaiLGlg~afs 479 (881)
T COG5110 412 DKGLETLDKYLYADESYRKAGALLGIGLSGLRVFE----ERPPALALLSNYLQSSSSKHVIAAILGLGAAFS 479 (881)
T ss_pred HhhHHHHHHHHhcCcccccccceeeeeeccccccc----ccchHHHHHHHhccCCchHHHHHHHhhhHHhhc
Confidence 44678888888887777777788887765443333 356778888899999999999999999886543
No 201
>KOG1837|consensus
Probab=91.29 E-value=0.98 Score=53.53 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHH
Q psy9904 78 CSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 78 ~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~ 157 (592)
..+.+++..+..-++. ++++...+.....|...+.|..|+.++.++.+..++....++++++|++-+.+.|.+-.|-..
T Consensus 1523 ~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~ 1601 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD-LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECL 1601 (1621)
T ss_pred HHHHHHHhhccCChhh-hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHH
Confidence 3344444444444445 666666555566777889999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHhh
Q psy9904 158 TCWTLSRYSHWVV 170 (592)
Q Consensus 158 a~~aL~~l~~~~~ 170 (592)
+...+-++-+.++
T Consensus 1602 ~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1602 CQKLIRQLEEVLG 1614 (1621)
T ss_pred HHHHHHHHHHHhc
Confidence 6665555544444
No 202
>KOG1822|consensus
Probab=91.14 E-value=47 Score=41.11 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=61.9
Q ss_pred hCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc--------------
Q psy9904 386 MQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-------------- 451 (592)
Q Consensus 386 l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-------------- 451 (592)
+.++++.+...++.++-.+.-..+.+. .++.+++.+...+...+.-.|+.++-++..++.+--.
T Consensus 1068 ls~~d~lnqa~ai~clqqlhlFapr~~--n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~ 1145 (2067)
T KOG1822|consen 1068 LSHSDPLNQAAAIKCLQQLHLFAPRHV--NLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLA 1145 (2067)
T ss_pred cCCCccchHHHHHHHHHHHHhhcchhc--cHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhh
Confidence 445577888888888877765444432 3566777777666655544444444444444332211
Q ss_pred -------hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-CchHhHhh
Q psy9904 452 -------DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-HDVAPLCS 501 (592)
Q Consensus 452 -------~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-~~~~p~~~ 501 (592)
.+.|.. .+=..+..++. ..+++.++.|+-.+++|+-.... +.+..|+.
T Consensus 1146 ~e~~~d~~~~pe~-gLeg~l~~mld-~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~ 1201 (2067)
T KOG1822|consen 1146 VETSPDANIRPEA-GLEGALFIMLD-TETDNKLLKNILETLSRMLNSLADELLSSWLM 1201 (2067)
T ss_pred hhhChhhhcCccc-cchHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111211 11122333444 34467888999999999654433 33455654
No 203
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.03 E-value=2 Score=45.96 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=63.8
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
+++...+-++...+.+++-.+|+-.+..|..++....+.=....+.++.-+.+.+-|-++.||.-|..+|.+|-+.-.
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 567777888888888999999999999999988765542223456788888888999999999999999999987543
No 204
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.99 E-value=4.7 Score=35.59 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=62.5
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccCC--hHH--HHHHHHHHHHHHHHH
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSDK--KAL--VRAITCWTLSRYSHW 168 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D~--~~~--VR~~a~~aL~~l~~~ 168 (592)
-...+..|...+++.++.+..-|+..|..++..|+..+...+ ..++..+...+.++ .+. ||..+...|...+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999987655443 34666666666543 233 999988888888887
Q ss_pred hhcCCCccchHHH
Q psy9904 169 VVSQPHDSYLKPL 181 (592)
Q Consensus 169 ~~~~~~~~~l~~l 181 (592)
+.....-.++..+
T Consensus 120 f~~~~~~~~i~~~ 132 (140)
T PF00790_consen 120 FKSDPELSLIQDT 132 (140)
T ss_dssp TTTSTTGHHHHHH
T ss_pred HCCCCCchHHHHH
Confidence 7543333333333
No 205
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.75 E-value=4.4 Score=35.94 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=62.5
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNP-DLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..+..|.+.+++.++.+...|+.+|..|++.||..|...+. .++..|.+.+++ .+..|++-+...+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 56888899999999999999999999999999998875543 577777777766 6788999999988888877763
No 206
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.70 E-value=11 Score=37.95 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHh--hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh-hHh
Q psy9904 295 PLLECLSSVATALQ--AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH-IDS 371 (592)
Q Consensus 295 ~~~e~l~~ia~~~g--~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~-~~~ 371 (592)
-.+.+|+.+-+++. ..-.||.+.-+ .+-+-+.+|| +|. -| ..+-..|+++...|.+.+|.. +..
T Consensus 27 D~is~L~kL~k~lq~~~~~~~~IP~k~-~v~krLaqCL--------~P~---LP-sGVH~KaLevY~~IF~~ig~~~L~~ 93 (307)
T PF04118_consen 27 DYISFLGKLLKALQNSNNQFPYIPHKL-QVSKRLAQCL--------NPA---LP-SGVHQKALEVYEYIFERIGPDGLAQ 93 (307)
T ss_pred HHHHHHHHHHHHHhccCCCCceeCcHH-HHHHHHHHhc--------CCC---CC-hHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 46778888888877 33334444211 1123334444 220 11 223457899999999999864 332
Q ss_pred hhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc
Q psy9904 372 LVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
.+ .-..+-++..+...+-.||-.-+.++....-.++..+.|.++.++..++..+.++..++...+...+..+....+.
T Consensus 94 dl--~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 94 DL--PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred hc--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh
Confidence 22 1223344444445557899999999988877888899999999999999999999888888888889888888776
Q ss_pred h
Q psy9904 452 D 452 (592)
Q Consensus 452 ~ 452 (592)
+
T Consensus 172 ~ 172 (307)
T PF04118_consen 172 K 172 (307)
T ss_pred h
Confidence 5
No 207
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.62 E-value=0.58 Score=52.60 Aligned_cols=87 Identities=25% Similarity=0.312 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHhhh-ch----------------hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh
Q psy9904 73 WNLRKCSAAALDVLANVF-RE----------------ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH 135 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~-~~----------------~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~ 135 (592)
-.+|.+|..+++.++..+ .. .+++.+.+.+.......+-..+..++.|||.+.
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g---------- 518 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG---------- 518 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------
Confidence 458999999999998743 22 244555556655556667788999999999975
Q ss_pred HhhHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHh
Q psy9904 136 LNELVPFLITCLSDK---KALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 136 l~~lvp~l~~~L~D~---~~~VR~~a~~aL~~l~~~~ 169 (592)
++..++.+...+.+. ...+|.+|.|||.+++...
T Consensus 519 ~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 519 HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 245667777777666 6899999999999886543
No 208
>KOG4413|consensus
Probab=90.51 E-value=2.1 Score=42.56 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=86.0
Q ss_pred HHHHH---HHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc-hhhhhH----HHHHHH
Q psy9904 392 EVRQS---SFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-DMRRYV----PMVINQ 463 (592)
Q Consensus 392 ~vR~~---a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-~~~p~~----~~il~~ 463 (592)
+.|+. ...+|.++.+.... ....++++|.+-..|..++.+|+.-+|..+|.|...+.. .+.... ..+++.
T Consensus 55 nhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 34544 44566666655422 123578999999999989999999999999999988762 333322 367888
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHhhhhCCCch---Hh--H-----hhhcccCCCchHhHHHHHHHHHHHhhCchh
Q psy9904 464 LIIIINRPNTPKTLLENTAITIGRLGYVCPHDV---AP--L-----CSSLRNIRDNEEKDSAFRGMCAMITVNPGG 529 (592)
Q Consensus 464 L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~---~p--~-----~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~ 529 (592)
++..+..++ .+|...|+.+|.|++.. |..+ .| . +..|...-++--|..++.-+..+...+|..
T Consensus 133 ildcIgged--deVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 133 ILDCIGGED--DEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred HHHHHcCCc--HHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 888888766 78998999999999864 3221 11 1 111111112223555666666666666643
No 209
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.17 E-value=0.48 Score=32.16 Aligned_cols=41 Identities=27% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHH
Q psy9904 120 ALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTL 162 (592)
Q Consensus 120 aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL 162 (592)
+|+.+.+.-+..+. .+.+...+...|.|+++.||.+|...|
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666665544322 358899999999999999999987653
No 210
>KOG3961|consensus
Probab=90.07 E-value=0.85 Score=42.37 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc---Cchhh
Q psy9904 378 IMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKL---GEDMR 454 (592)
Q Consensus 378 l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~---~~~~~ 454 (592)
.++++...|.+-+..-|-.|-.=+.||..+.++.+.|.+|+++..|-..+...+.+|...++.+|..+.... |..+.
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 345555555544445555666667788888889999999999999999999888889888888888887654 47789
Q ss_pred hhHHHHHHHHH
Q psy9904 455 RYVPMVINQLI 465 (592)
Q Consensus 455 p~~~~il~~L~ 465 (592)
||+.+++|.+-
T Consensus 195 PfYRQlLp~~n 205 (262)
T KOG3961|consen 195 PFYRQLLPVLN 205 (262)
T ss_pred hHHHHhhhhhh
Confidence 99999998664
No 211
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.05 E-value=28 Score=36.80 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhh-hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHH--HHHchhhhhhhhhhHHHHHHhcc-
Q psy9904 352 IVALDLLSGLAEGLD-MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDL--TKACFSHVHPCISDFMPILGQNL- 427 (592)
Q Consensus 352 ~~ald~l~~l~~~lg-~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~l--a~~~~~~~~~~l~~llp~l~~~l- 427 (592)
...++-+..+...+. ..|.... ..++..+..|++.++..|-+.|+.++.+= .... ..+-..++|.++..+
T Consensus 273 v~FL~el~~il~~~~~~~f~~i~--~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li----~~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 273 VLFLNELEEILEVLPPEEFQKIM--VPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI----SQNSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHH--HHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH----HCTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH----HhChHHHHHHHHHHHH
Confidence 456788888888776 4577766 67899999999999999999999887542 3322 233344555555444
Q ss_pred ---CCC-ChhHHHHHHHHHHHHHH
Q psy9904 428 ---NPD-LISVCNNATWAIGEISV 447 (592)
Q Consensus 428 ---~~~-~~~v~~~A~~~Lg~ia~ 447 (592)
+.. +..|++.|..++..+..
T Consensus 347 ~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 347 RNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp STTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 332 45788888888777653
No 212
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=89.55 E-value=0.21 Score=39.67 Aligned_cols=10 Identities=10% Similarity=0.531 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy9904 113 IKESGILALG 122 (592)
Q Consensus 113 ~R~aa~~aLg 122 (592)
.|.|++.+||
T Consensus 89 a~~a~~~g~~ 98 (101)
T PF09026_consen 89 ARQASVRGIG 98 (101)
T ss_dssp ----------
T ss_pred chhhcccccc
Confidence 4556665555
No 213
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.37 E-value=32 Score=36.44 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=42.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhch-hhhHhhHHHHHHHhccCCh-HHHHHHHHHHHHHHH
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGM-VPHLNELVPFLITCLSDKK-ALVRAITCWTLSRYS 166 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i-~~~l~~lvp~l~~~L~D~~-~~VR~~a~~aL~~l~ 166 (592)
-|++. .+++++|...+.|+..|..++....... ...++.++..+...|+.++ ...+..+..+|+.+.
T Consensus 104 ~~fl~-lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL 172 (429)
T cd00256 104 EPFFN-LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL 172 (429)
T ss_pred HHHHH-HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh
Confidence 34444 6678899999999988888875322211 1234556677777776542 556666667776654
No 214
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.16 E-value=12 Score=32.70 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=58.7
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH-h-hHHHHHHHhccC---ChHHHHHHHHHHHHHHHHHh
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL-N-ELVPFLITCLSD---KKALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~-~lvp~l~~~L~D---~~~~VR~~a~~aL~~l~~~~ 169 (592)
-...+..|...++++++.+...|+..|..++..|+..+...+ . ..+.-+++.+.. .++.||.-+...+...+..+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345677788888999999999999999999999997554333 2 344446666654 47899999888888888777
Q ss_pred hc
Q psy9904 170 VS 171 (592)
Q Consensus 170 ~~ 171 (592)
..
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 215
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.94 E-value=17 Score=36.88 Aligned_cols=176 Identities=12% Similarity=0.134 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhh----hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~----~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
+..++..++.++.-+...|..+++.++...+..... .++.++..+-..++.++.++...|+.+|+.+... ..++
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~R 184 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEYR 184 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chhH
Confidence 444555777888999999999999998776654443 4455555555544444556668889999998743 2233
Q ss_pred hhH--HHHHHHHHHHH-----cCCCCCchHHHHHHHHHHHhhhhCC-------CchHh-HhhhcccCCCchHh--HHHHH
Q psy9904 455 RYV--PMVINQLIIII-----NRPNTPKTLLENTAITIGRLGYVCP-------HDVAP-LCSSLRNIRDNEEK--DSAFR 517 (592)
Q Consensus 455 p~~--~~il~~L~~~l-----~~~~~~~~v~~na~~~lgrl~~~~~-------~~~~p-~~~~L~~~~d~~Ek--~~a~~ 517 (592)
..+ ...++.+.+++ ........+..+++-|+=-+..... ..+.| ++..+.. ...|| +.++.
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHH
Confidence 322 56677777777 2222235566666655544432210 01222 2333322 12344 34667
Q ss_pred HHHHHHhhCchhhh-----hhHHHHHHHhhccCCCchhHHHHHHHH
Q psy9904 518 GMCAMITVNPGGVV-----QEFIFFCDAVASWSTPKEDLKEMFHKI 558 (592)
Q Consensus 518 ~l~~li~~~p~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~l 558 (592)
.|-+++..++.... ..+...+..+..-+=.++|+.+.+..+
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 77777766664322 234444555444333556666665554
No 216
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=88.91 E-value=2 Score=34.92 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh--HHHHHHHHHHHHHHHHHh
Q psy9904 108 HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK--ALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 108 s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~--~~VR~~a~~aL~~l~~~~ 169 (592)
+++|..|+-|...|+.|+...+..-..--+.+...+.+.|.||+ ...+.-|..+|..+....
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998775433445678889999999874 568899999999886543
No 217
>KOG2025|consensus
Probab=88.83 E-value=6.1 Score=43.47 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=62.5
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
+++..++-++.....+++-.+|.-.+..|..+......-=...++.+...+...|.|-.|.||-.|..||+++-+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 678888888888888999999999999999988733221124568888999999999999999999999999875
No 218
>KOG2025|consensus
Probab=88.79 E-value=1.9 Score=47.18 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred cchHHHHHHHHHHHHHhhhc---hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc-
Q psy9904 72 DWNLRKCSAAALDVLANVFR---EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL- 147 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~---~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L- 147 (592)
+-+||+-....|..+....+ +.++..+...+...+.|..+.+|.-|++||..+-+...+. .. .++..+...+
T Consensus 98 dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---e~-~v~n~l~~liq 173 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---EC-PVVNLLKDLIQ 173 (892)
T ss_pred chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---cc-cHHHHHHHHHh
Confidence 35799989999999887544 5788888888889999999999999999999987533321 11 1222222222
Q ss_pred cCChHHHHHHHHHHHH
Q psy9904 148 SDKKALVRAITCWTLS 163 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~ 163 (592)
+||++.||.+|+-.+.
T Consensus 174 nDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNIS 189 (892)
T ss_pred cCCcHHHHHHHHHhhc
Confidence 5999999999876544
No 219
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.67 E-value=6.1 Score=34.95 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=59.2
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhcC
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
...+..|...+++.++.+..-|+..|..++..|+..+...+ ..++..+...++ ..++.||..++..+..-+..+.+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45677788888999999999999999999999986544332 346666666665 567899999888888888777543
No 220
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=88.65 E-value=0.56 Score=29.03 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 111 WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 111 ~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
|.+|+.|+.+||.+.. +..++.|++.|+|+
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcCC
Confidence 7899999999999731 45667777777764
No 221
>KOG2081|consensus
Probab=88.47 E-value=24 Score=37.93 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC--CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHh
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ--DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQ 425 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~--~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~ 425 (592)
++||-...|.+..++--+|.. +.+..+...+. +...+.-++++-.+..+++.....=.+.+|.++..+.+
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~--------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSD--------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN 437 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcH--------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC
Confidence 456777788888888777753 22333333332 44678889999999999988776655555555555554
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhH------
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPL------ 499 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~------ 499 (592)
. ++...+|..++-.+|++..-.... ..++..++..+...+.. ....-.++.+..+++..|...+.+.
T Consensus 438 l--p~Q~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~----~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~ 510 (559)
T KOG2081|consen 438 L--PEQAPLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQL----KRLASAAALAFHRICSACRVQMTCLIPSLLE 510 (559)
T ss_pred C--ccchhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3 233449999999999988654321 11233333333333332 1255566677778877766554442
Q ss_pred -hhhcccCCCchHhHHHHHHHHHHHhhCc
Q psy9904 500 -CSSLRNIRDNEEKDSAFRGMCAMITVNP 527 (592)
Q Consensus 500 -~~~L~~~~d~~Ek~~a~~~l~~li~~~p 527 (592)
...|-...-++|-..-.+|+..++..-|
T Consensus 511 l~~~l~~~~~~~e~a~l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 511 LIRSLDSTQINEEAACLLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 1222222334444335566666665555
No 222
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.30 E-value=5 Score=35.04 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=59.0
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCC---CChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNP---DLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~---~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..+..|.+.++++++.+...|+.+|..|.+.||..|...+. .++..+.+.+.. ....|+.-++..+...+..++.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 46788889999999999999999999999999998754443 355555555543 4678999999888888877764
No 223
>KOG2021|consensus
Probab=88.08 E-value=50 Score=37.02 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Q psy9904 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468 (592)
Q Consensus 428 ~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l 468 (592)
...+..||.-|.+......+.++..+.||++.++..+.+.|
T Consensus 545 hn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 545 HNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999888888889999999999999998
No 224
>KOG0889|consensus
Probab=88.03 E-value=1.1e+02 Score=40.76 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=60.5
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh--------chhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCMN--------GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~--------~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
.+++.|.+.+.+.+...|.++..+++.+-+.... ...|....+++-++++..|+.|.-|...+.+|+.+.+.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 4677788888889999999999999998764321 23366788999999999999999999999999988876
Q ss_pred hh
Q psy9904 169 VV 170 (592)
Q Consensus 169 ~~ 170 (592)
+.
T Consensus 1064 ~~ 1065 (3550)
T KOG0889|consen 1064 MP 1065 (3550)
T ss_pred ch
Confidence 54
No 225
>KOG2549|consensus
Probab=88.01 E-value=8.1 Score=41.30 Aligned_cols=95 Identities=14% Similarity=0.240 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC----------CCChHHHHHHHHHHHHHHHHchhhhhhhhhhH
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ----------DPMPEVRQSSFALLGDLTKACFSHVHPCISDF 419 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~----------~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~l 419 (592)
....++.++.++...---...||+ -.++|.++.|+- |....+|..|+.+++.+++.++......-+.+
T Consensus 263 lL~~lm~m~rSLl~Np~i~lepYl--h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Ri 340 (576)
T KOG2549|consen 263 LLIYLMRMVRSLLDNPNIFLEPYL--HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRI 340 (576)
T ss_pred HHHHHHHHHHHHhcCCccchhhHH--HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334445555554443333467999 689999999873 34578999999999999999988777766788
Q ss_pred HHHHHhccCCCC--hhHHHHHHHHHHHHH
Q psy9904 420 MPILGQNLNPDL--ISVCNNATWAIGEIS 446 (592)
Q Consensus 420 lp~l~~~l~~~~--~~v~~~A~~~Lg~ia 446 (592)
...+.+.+.|+. ++..=.|+.+|.++.
T Consensus 341 t~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 341 TRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 888888887763 344445666666654
No 226
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.73 E-value=2.7 Score=39.17 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=56.4
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
+...++.+.+.+.+++..+|.+|+..++.+....- -|=.+.+|.++.+..||++.+|..|...+..+.+-
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 34445666667788999999999999999987432 12346999999999999999999999999888764
No 227
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.60 E-value=1.3 Score=34.12 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHH
Q psy9904 113 IKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS-DKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~ 168 (592)
.+++|+.|+|.++..-.. + +++ ..+++.+++... +|...||.++.++||-++..
T Consensus 3 ~lKaaLWaighIgss~~G-~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG-I-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHH-H-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 478999999999864221 1 233 268888888765 67889999999999999864
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.57 E-value=7.2 Score=42.80 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=85.7
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchh------hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFS------HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED 452 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~------~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~ 452 (592)
+..+.+.+...+..+|-+.+.+++++..+... +..+-+..++..+.+.+.|.++-+|.-|+.++..|.. .+..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifd-l~sk 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFD-LNSK 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh-Cccc
Confidence 45667778888899999999999999877642 3344566788888999999999999999999888763 2233
Q ss_pred hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 453 MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 453 ~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
+..--..+...+...+++.. .-|+.||+.-+.++...||
T Consensus 380 ~~~~r~ev~~lv~r~lqDrs--s~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDRS--SVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccchHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhcCC
Confidence 33334466666777777544 5789999999999998888
No 229
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=87.45 E-value=49 Score=36.26 Aligned_cols=129 Identities=13% Similarity=0.202 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHchhhh-hhhhhhHHHHHHh-----ccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcC
Q psy9904 397 SFALLGDLTKACFSHV-HPCISDFMPILGQ-----NLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINR 470 (592)
Q Consensus 397 a~~~l~~la~~~~~~~-~~~l~~llp~l~~-----~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~ 470 (592)
-..++|.++.++.+.- +.|+-+++.-++. .-+++..-|.+|..+.+|..-+-+... ..|+..++..|.+-+..
T Consensus 503 LcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkah-w~FLkTVv~KLFEFMhE 581 (1053)
T COG5101 503 LCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAH-WSFLKTVVKKLFEFMHE 581 (1053)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3345566555554432 3355555555543 234555566778888888765444322 35777888888887765
Q ss_pred CCCCchHHHHHHHHHHHhhhhCCCch--------HhH----hhhcccCCC---chHhHHHHHHHHHHHhhCch
Q psy9904 471 PNTPKTLLENTAITIGRLGYVCPHDV--------APL----CSSLRNIRD---NEEKDSAFRGMCAMITVNPG 528 (592)
Q Consensus 471 ~~~~~~v~~na~~~lgrl~~~~~~~~--------~p~----~~~L~~~~d---~~Ek~~a~~~l~~li~~~p~ 528 (592)
.+ ..+++-||.+.-++...||-.+ .|| ++.|+.... ...+.+.|.+++.++..-|.
T Consensus 582 ~H--EGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 582 DH--EGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred hh--hhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccch
Confidence 44 7899999999999999998542 233 345554332 22377888888888876664
No 230
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.28 E-value=5.3 Score=37.34 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=52.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 100 PILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 100 ~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
+.+...+.|++.-.|.+|+..+...... ..+.+.++..+...+.|++..||.+..|+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 7888888998877777777666554433 246888999999999999999999999999999865
No 231
>KOG2149|consensus
Probab=86.93 E-value=8.2 Score=39.75 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=77.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHH-chhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKA-CFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~-~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
.+++.+.....|.+..||...+.++..++.. +++...|++.-++|.+...+....++++.-+..-+.-++..+++.+..
T Consensus 99 ~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 99 ALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 4566666677789999999999999886644 456679999999999999998888999999999999999999888777
Q ss_pred hHHHHHHHHHHHHcC
Q psy9904 456 YVPMVINQLIIIINR 470 (592)
Q Consensus 456 ~~~~il~~L~~~l~~ 470 (592)
+...+++.+...+..
T Consensus 179 ~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 179 YASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 232
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.83 E-value=9.2 Score=33.69 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=58.9
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCC------CChhHHHHHHHHHHHHHHh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNP------DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~------~~~~v~~~A~~~Lg~ia~~ 448 (592)
..+..+.+.++++++.+-..|+.+|..|++.||..|...+. .++..+++.+.+ ....|++-.+..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999998865543 466666666643 3578998888888887776
Q ss_pred cC
Q psy9904 449 LG 450 (592)
Q Consensus 449 ~~ 450 (592)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 65
No 233
>KOG2549|consensus
Probab=86.49 E-value=10 Score=40.51 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=64.0
Q ss_pred hhhhhhhhHHHHHHhccC----------CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHH
Q psy9904 411 HVHPCISDFMPILGQNLN----------PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLEN 480 (592)
Q Consensus 411 ~~~~~l~~llp~l~~~l~----------~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~n 480 (592)
.+.||+..+||.++.|+- ++++.+|.-|+..++.++...+......-+-++..+.+++.++..+.+....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 467999999999998862 4567899999999999998888766666677888889998877556677777
Q ss_pred HHHHHHHhhh
Q psy9904 481 TAITIGRLGY 490 (592)
Q Consensus 481 a~~~lgrl~~ 490 (592)
++..+..++.
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 7777777774
No 234
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=86.13 E-value=9 Score=32.36 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=51.4
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhh--HHHHHHH----hc--cCChHHHHHHHHHHHHH
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE--LVPFLIT----CL--SDKKALVRAITCWTLSR 164 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~--lvp~l~~----~L--~D~~~~VR~~a~~aL~~ 164 (592)
.....++..|...+++++|++..-|+..|-.++..|++.+..++.. .+-.++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4467788899999999999999999999999999999755544422 1112221 11 24578899888776654
No 235
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.03 E-value=1.2 Score=30.30 Aligned_cols=39 Identities=10% Similarity=-0.016 Sum_probs=28.5
Q ss_pred HHHHHHhhhchh-hhHhHHHHHHHhhcCCChhHHHHHHHH
Q psy9904 82 ALDVLANVFREE-LLPVLLPILKETLFHHDWEIKESGILA 120 (592)
Q Consensus 82 ~L~~la~~~~~~-vl~~ll~~l~~~l~s~~~~~R~aa~~a 120 (592)
+|+.+.+.-|.- --+.+...+.+.+.|+++.+|+||+..
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 455555544431 236888899999999999999999865
No 236
>KOG1243|consensus
Probab=85.93 E-value=2.2 Score=46.72 Aligned_cols=110 Identities=11% Similarity=0.180 Sum_probs=85.6
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
..+++.+++.+..++..+|-.-+.-+-....++.++. +-++++|.+...+.|.++.+|..++.++..++-.++.. .
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 4689999999999999999888877777777766543 35789999999999999999999999999999777654 1
Q ss_pred hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 456 YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 456 ~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
.=..++..+... +. +.+..++-|..+|+|+++..
T Consensus 405 Ln~Ellr~~ar~-q~-d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 405 LNGELLRYLARL-QP-DEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred hcHHHHHHHHhh-Cc-cccCcccccceeeecccccc
Confidence 122444444443 22 44578999999999999865
No 237
>KOG1243|consensus
Probab=85.88 E-value=2.1 Score=46.94 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=74.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 177 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~ 177 (592)
++|.|.+++.+++-.+|---+.-+-...+...+. ....+|+|.+..++.|.++.+|..|..++..++.-+.+..
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~---- 404 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN---- 404 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh----
Confidence 7788888888888888877777777777766643 2457899999999999999999999999998887765420
Q ss_pred hHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 178 LKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 178 l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
+ . .+++-|+..+-.|.+.-+|.-++..+++.
T Consensus 405 L---------------n--~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 405 L---------------N--GELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred h---------------c--HHHHHHHHhhCccccCcccccceeeeccc
Confidence 0 0 34555555555565655665554445543
No 238
>KOG2199|consensus
Probab=85.71 E-value=10 Score=38.76 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=70.0
Q ss_pred CCccccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHH
Q psy9904 67 DSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLI 144 (592)
Q Consensus 67 ~~~~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~ 144 (592)
-.+.++|.+ ....-|.+.+.. ..-...+..|...+.+.++.+-.-|+..++++++.|++.+..-+ ..+..-|.
T Consensus 20 ~nT~enW~~---IlDvCD~v~~~~--~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 20 KNTSENWSL---ILDVCDKVGSDP--DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred ccccccHHH---HHHHHHhhcCCC--cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 357788988 222222332222 44456788888889999999999999999999999997654322 33455555
Q ss_pred Hhcc-CChHHHHHHHHHHHHHHHHHhhc
Q psy9904 145 TCLS-DKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 145 ~~L~-D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
..+. ..+++|+......+...++.+..
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 5555 56799999888888888876654
No 239
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.40 E-value=19 Score=35.52 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC-----C-----CChHHHHHHHHHHHHHHHHchhhhhhhhhhH
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-----D-----PMPEVRQSSFALLGDLTKACFSHVHPCISDF 419 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-----~-----~~~~vR~~a~~~l~~la~~~~~~~~~~l~~l 419 (592)
..-+.+...+++...-.--..||+ .++||.++.|+- . +...+|.-|..+++-.+..++...+..-|.+
T Consensus 252 ~LtTv~~m~~sLL~N~~iFvdPY~--hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRv 329 (450)
T COG5095 252 KLTTVVMMYSSLLKNKYIFVDPYL--HQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRV 329 (450)
T ss_pred HHHHHHHHHHHHhcCCceeecHHH--HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHH
Confidence 334455555555443322356999 689998888862 1 1245999999999999999888877777778
Q ss_pred HHHHHhccCCC--ChhHHHHHHHHHHHHHH
Q psy9904 420 MPILGQNLNPD--LISVCNNATWAIGEISV 447 (592)
Q Consensus 420 lp~l~~~l~~~--~~~v~~~A~~~Lg~ia~ 447 (592)
...+++..-|. .++..-.|+.++..+..
T Consensus 330 trTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 330 TRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 88887775433 23455567777766653
No 240
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.36 E-value=22 Score=31.41 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred CchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHH-HHhccCC---CChhHHHHHHHHHHHHHHh
Q psy9904 376 SNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPI-LGQNLNP---DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 376 ~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~-l~~~l~~---~~~~v~~~A~~~Lg~ia~~ 448 (592)
...+..|.+.++ ++++.+...|+.++..|++.||..|...+. .++.. |.+.+.+ ....|++-++..+...+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 356788888887 468888889999999999999998875443 46664 5555543 2357888888888888877
Q ss_pred cCch-hhhhHHHHHHHH
Q psy9904 449 LGED-MRRYVPMVINQL 464 (592)
Q Consensus 449 ~~~~-~~p~~~~il~~L 464 (592)
++.+ -.+++..+...|
T Consensus 117 f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 117 FRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hCCCccchHHHHHHHHH
Confidence 6533 123444444433
No 241
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.16 E-value=12 Score=33.01 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=57.6
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCC--Chh--HHHHHHHHHHHHHHhcC
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPD--LIS--VCNNATWAIGEISVKLG 450 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~--~~~--v~~~A~~~Lg~ia~~~~ 450 (592)
..+..|.+.+++.++.+...|+.++..|.++||..|...+ ..++..+.+.+.+. ... |++-+.-.+...+..++
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 5678899999999999999999999999999999887654 24666666654322 222 89988888888887764
No 242
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=84.69 E-value=18 Score=34.05 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh
Q psy9904 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH 411 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~ 411 (592)
..++.+++.++..+|....|++ .+++..+.+.-++++...|+.+=.++|...+++|.+
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l--~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLL--KPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHH--HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 4578889999999999888888 577888888887777889999999999999999864
No 243
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.42 E-value=3 Score=35.44 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 419 FMPILGQNLN-PDLISVCNNATWAIGEISVKLGEDMRRYVP--MVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 419 llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
++..|++.|. +.++.+...||.=+|++++..+.. +..+. ..-..++.++++++ +.|+.+|..|+.++...
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d--~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHED--PEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCC--HHHHHHHHHHHHHHHHh
Confidence 4555555553 336677888999999999887643 23333 24566778888765 89999999999998754
No 244
>KOG1517|consensus
Probab=84.38 E-value=18 Score=41.73 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchh-hhhhhhhhHHHHHHh
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDP-MPEVRQSSFALLGDLTKACFS-HVHPCISDFMPILGQ 425 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~-~~~~~l~~llp~l~~ 425 (592)
++-+..+.=.|+.|+.+....=...++ .+++.+.+..+++. .+-+||-.+-+||.|-..+.. .+.-.=..--..|+.
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 355555666777777764422222232 56788888888884 688999999999999765533 121111223455667
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhh----------------HHHHHH----HHHHHHcCCCCCchHHHHHHHHH
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRY----------------VPMVIN----QLIIIINRPNTPKTLLENTAITI 485 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~----------------~~~il~----~L~~~l~~~~~~~~v~~na~~~l 485 (592)
.|.|+.++||.+|++|||.+..+...+|..- ++..+. .++.+++... .-++...+.++
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs--plvr~ev~v~l 727 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS--PLVRTEVVVAL 727 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc--hHHHHHHHHHH
Confidence 7888999999999999999876542222111 222222 3444444332 45555577777
Q ss_pred HHhhhhCC
Q psy9904 486 GRLGYVCP 493 (592)
Q Consensus 486 grl~~~~~ 493 (592)
.+++..+.
T Consensus 728 s~~~~g~~ 735 (1387)
T KOG1517|consen 728 SHFVVGYV 735 (1387)
T ss_pred HHHHHhhH
Confidence 77766543
No 245
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=84.31 E-value=0.62 Score=28.18 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC
Q psy9904 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D 149 (592)
+|++|+.+||.+.. +..+|.|++.|+|
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhcC
Confidence 69999999999876 4566666666654
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.26 E-value=13 Score=32.94 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCc
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLN-PDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
...+..|.+.++++++.+...|+.+|..|+++||..|...+. .++..|.+.+. .....|++.++..+...+..++.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999999999999988765442 46666666554 34678999998888888877654
No 247
>KOG1293|consensus
Probab=83.81 E-value=18 Score=39.52 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=66.6
Q ss_pred ccchHHHHHHHHHHHHHhhhc--------hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFR--------EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL-NELVP 141 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~--------~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp 141 (592)
.+-..+.||..|+-.++.... .++..+++|.+ .+|+-.+..+++-|+-.++-..++.=+.++ ...+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId 464 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID 464 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH
Confidence 345577777777766665431 24556666555 788888888887777777655543222333 45888
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
.+.+.+.++.+.+|..+.|+|-.+.=.
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 999999999999999999999987643
No 248
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=83.67 E-value=15 Score=31.44 Aligned_cols=74 Identities=14% Similarity=-0.001 Sum_probs=51.6
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhh---HHHHHHHhc--cC------ChHHHHHHHHHH
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE---LVPFLITCL--SD------KKALVRAITCWT 161 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~---lvp~l~~~L--~D------~~~~VR~~a~~a 161 (592)
..+..++.+|...|++.++.++.=++..|..++...++.+...+.. ++..+.+.= -| +...||.+|-.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4567889999999999999999999999999887655444333322 333333222 12 346899999998
Q ss_pred HHHHH
Q psy9904 162 LSRYS 166 (592)
Q Consensus 162 L~~l~ 166 (592)
+..+.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 88765
No 249
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=83.62 E-value=60 Score=33.86 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhhh-h--HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh---hhhhhhhHHHHHHhc
Q psy9904 353 VALDLLSGLAEGLDMH-I--DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH---VHPCISDFMPILGQN 426 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~-~--~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~---~~~~l~~llp~l~~~ 426 (592)
.+.+..+.++.-+|.. + .+++ .+.+.+...|+++.++.+|..|+.++..+....... ..+.+.-++.++...
T Consensus 249 ~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~ 326 (372)
T PF12231_consen 249 LAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQ 326 (372)
T ss_pred hHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHH
Confidence 4677888888777754 2 2445 567888899999999999999999999998755332 223344455555555
Q ss_pred cCCCC-h----hHHHHHHHHHHHH
Q psy9904 427 LNPDL-I----SVCNNATWAIGEI 445 (592)
Q Consensus 427 l~~~~-~----~v~~~A~~~Lg~i 445 (592)
++.+. . +++..++..++.+
T Consensus 327 l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 327 LRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hCccccccccHHHHHHHHHHHhch
Confidence 54332 2 4555665555554
No 250
>KOG1822|consensus
Probab=83.61 E-value=1.3e+02 Score=37.64 Aligned_cols=101 Identities=23% Similarity=0.170 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHHHHhhhch-hhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHHhc
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE-ELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLITCL 147 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~-~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~~L 147 (592)
..-..|-+++.++++++...|+ ..+..+.+..-..++|. ++..|-.-.+|+|.+-...+.... +|+..-+..++..-
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~ 967 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALA 967 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHh
Confidence 3456888899999999999996 44566666666666664 566677779999999887664443 78999899999999
Q ss_pred cCChH-HHHHHHHHHHHHHHHHhhc
Q psy9904 148 SDKKA-LVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 148 ~D~~~-~VR~~a~~aL~~l~~~~~~ 171 (592)
+|+++ .|+.-+..++.-+.+-..+
T Consensus 968 ~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 968 TDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred hcCCCchhhhhHHHHHHHHHcCCCc
Confidence 99875 9998877777777665444
No 251
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.49 E-value=5.1 Score=34.05 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHhh-cCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 98 LLPILKETL-FHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 98 ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
++..|.+.+ .+.++..---|+.=||.++...+.+- ..+ -..-..+.+++.++++.||.-|+.|+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444444 33466666678888899998877532 122 2366778889999999999999999998753
No 252
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=82.88 E-value=3.4 Score=34.29 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred hhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh-hhhhhhhHHHHHHhccCCC
Q psy9904 368 HIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH-VHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~ 430 (592)
.+.||+ +.++..+...+.+-.++||..++.+|.-+.++++.. +..+...+++.++..+.-.
T Consensus 4 ~l~p~~--~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFF--PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHH--HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 356777 677888888899999999999999999999999998 6677777887777766543
No 253
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.87 E-value=47 Score=32.09 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhc
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQN 426 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~ 426 (592)
+.+.....+.++..++..- + ... +.+++.+....+....+.+..+..++..+.+.-...| |++..++-.....
T Consensus 14 ~~~~~~~~L~~L~~l~~~~---~-~~~--~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHK---N-VCV--PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred ChHHHHHHHHHHHHHhccC---c-cch--hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 4455556677777665532 1 222 4567777777777677777788888888887766555 6676665553322
Q ss_pred c------CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh-H
Q psy9904 427 L------NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP-L 499 (592)
Q Consensus 427 l------~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p-~ 499 (592)
. ++...+..-....++.+++...++ +-..+++.+..++++ +....+...+..++.-++...--++.+ |
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~-~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQ-SCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 1 122344445556788888876655 666788888888842 223566777777777777432222333 5
Q ss_pred hhhcccCCCchHhHHHHHHHHHHHhhCc
Q psy9904 500 CSSLRNIRDNEEKDSAFRGMCAMITVNP 527 (592)
Q Consensus 500 ~~~L~~~~d~~Ek~~a~~~l~~li~~~p 527 (592)
--..+++ +.+.+-...+.+|.+...-|
T Consensus 162 ~vl~~~l-~~~~rp~v~~~l~~l~~l~~ 188 (234)
T PF12530_consen 162 KVLQKKL-SLDYRPLVLKSLCSLFALVP 188 (234)
T ss_pred HHHHHhc-CCccchHHHHHHHHHHHHhc
Confidence 4333434 44445667776776666544
No 254
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.53 E-value=86 Score=34.84 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch--------hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q psy9904 414 PCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED--------MRRYVPMVINQLIIIINRPNTPKTLLENTAITI 485 (592)
Q Consensus 414 ~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~--------~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~l 485 (592)
.++..+.+.+-..-......++..|+-++|.++...-.+ ...+++.+...|-...+..+ ..-+--++.+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~LkaL 470 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD--EEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC--chheeeHHHhh
Confidence 344555544443333346678999999999998654211 12233333333333333322 33445678899
Q ss_pred HHhhhhCCCchHhHhhhcc-cCC-CchHhHHHHHHHHHHHhhCchhhhhhHHHH
Q psy9904 486 GRLGYVCPHDVAPLCSSLR-NIR-DNEEKDSAFRGMCAMITVNPGGVVQEFIFF 537 (592)
Q Consensus 486 grl~~~~~~~~~p~~~~L~-~~~-d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~ 537 (592)
|.+|. |..+..+...+. ... ...-|..|+.+|-++...+|..+.+.+..+
T Consensus 471 GN~g~--~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 471 GNAGH--PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred hccCC--hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 99885 433222222232 111 122377899999999888898776655444
No 255
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.53 E-value=34 Score=30.19 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=66.2
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHH-HHHhc
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPF-LITCL 147 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~-l~~~L 147 (592)
+|.+ ....-|.+... +.--...+..|...++ +.++++-.-|+..|.+++..|+..+...+ ..++.- +++.+
T Consensus 18 dw~~---ileicD~In~~--~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i 92 (141)
T cd03565 18 DWGL---NMEICDIINET--EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLI 92 (141)
T ss_pred CHHH---HHHHHHHHhCC--CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHH
Confidence 5766 33444444331 1222356667777776 46888888889999999999997554333 345554 56666
Q ss_pred cC---ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy9904 148 SD---KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLM 182 (592)
Q Consensus 148 ~D---~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll 182 (592)
.+ ++..|+.-.+..+...+..+.+...-+++..+.
T Consensus 93 ~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 130 (141)
T cd03565 93 NPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVY 130 (141)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHH
Confidence 52 456899888888888887775433223343333
No 256
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.38 E-value=46 Score=36.41 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=46.4
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
..-+..++.+++|.+..||..|+.-|..+|+..++ |++.+.-+|.+.|+.+++.....+-++|-.+..
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 45688889999999999999999999998887544 567777788888887777666666666666543
No 257
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.11 E-value=56 Score=33.08 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhh----hHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVP----HLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~----~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
.-|++. .+.++||..+..|+..|+.++......... .++.++..+...++.++..++..++.+|+.+..
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 455555 778889999999999999999877754333 444555555555555667788899999998863
No 258
>KOG2137|consensus
Probab=81.91 E-value=6.8 Score=43.24 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh-chhhhHhhHHHHHHH-hccCChHHH
Q psy9904 78 CSAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN-GMVPHLNELVPFLIT-CLSDKKALV 154 (592)
Q Consensus 78 ~aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~-~i~~~l~~lvp~l~~-~L~D~~~~V 154 (592)
+-..-++.|.+..+ +++...++|+|...+++.+.+..+.++..+..++|...- .++ ..|+|.|-+ .++..+..|
T Consensus 369 ~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk---~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK---QAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH---HHHHHHhhcchhcccchHH
Confidence 33455677788887 588999999999999999999999999999999998772 222 346666655 456678899
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9904 155 RAITCWTLSRYSHWVV 170 (592)
Q Consensus 155 R~~a~~aL~~l~~~~~ 170 (592)
+..++-|++.+.+.+.
T Consensus 446 kvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 446 KVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986653
No 259
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=81.74 E-value=9.4 Score=36.01 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=55.5
Q ss_pred HHHHHhhhch-hhhHhHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHH
Q psy9904 83 LDVLANVFRE-ELLPVLLPILKETLFHHD-WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCW 160 (592)
Q Consensus 83 L~~la~~~~~-~vl~~ll~~l~~~l~s~~-~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~ 160 (592)
+|.++..+.. ...+.+++......++.+ |..|-+.+.++...-++ +....+++.+-..|.|.+..||.+.-|
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAigW 176 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIGW 176 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHHH
Confidence 5666665543 556677776644444443 55555555555554432 344579999999999999999999999
Q ss_pred HHHHHHHH
Q psy9904 161 TLSRYSHW 168 (592)
Q Consensus 161 aL~~l~~~ 168 (592)
+|.+++.+
T Consensus 177 aLrq~~k~ 184 (222)
T COG4912 177 ALRQIGKH 184 (222)
T ss_pred HHHHHHhh
Confidence 99999974
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.57 E-value=18 Score=31.53 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=59.6
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCCCC--hhHHHHHHHHHHHHHHhcC
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNPDL--ISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~~~--~~v~~~A~~~Lg~ia~~~~ 450 (592)
..+..|.+.++++++.+...|+.+|..|.+.||..|...+. .++..|.+.+.+.. +.|++-++..+...+..++
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999998876553 47777777665543 3389888888888887765
No 261
>PF05536 Neurochondrin: Neurochondrin
Probab=80.95 E-value=95 Score=34.27 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh--chh-hhHhhH-HHHHHHhccC-------ChHHHHHHHHHHHHHHH
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMN--GMV-PHLNEL-VPFLITCLSD-------KKALVRAITCWTLSRYS 166 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~--~i~-~~l~~l-vp~l~~~L~D-------~~~~VR~~a~~aL~~l~ 166 (592)
.+.-....+++.+...|-+|++.+..+..+-.. ... ...+.+ .+++-.+|+. +...-+.-|.--|..||
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 345555677888888999999999988875431 100 111111 2344444543 22345666667777777
Q ss_pred H
Q psy9904 167 H 167 (592)
Q Consensus 167 ~ 167 (592)
.
T Consensus 86 ~ 86 (543)
T PF05536_consen 86 R 86 (543)
T ss_pred C
Confidence 5
No 262
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.74 E-value=12 Score=36.85 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC----------CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Q psy9904 396 SSFALLGDLTKACFSHVHPCISDFMPILGQNLN----------PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLI 465 (592)
Q Consensus 396 ~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~----------~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~ 465 (592)
..+.....+.+.-.--+.||+.++||.++.++- .+++.+|..|+..++-++.+.+...+..-+.+...+.
T Consensus 255 Tv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 255 TVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 333333444433333457999999999988751 1346799999999999988887665555566666666
Q ss_pred HHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 466 IIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 466 ~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
+.+-+..-..+..-.|..++.-++.
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhch
Confidence 6654322234455566666666654
No 263
>KOG2153|consensus
Probab=80.72 E-value=96 Score=34.19 Aligned_cols=28 Identities=29% Similarity=0.206 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAE 126 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iae 126 (592)
+.-+.+++.++++.+|+-++++|-++-.
T Consensus 212 L~~l~eml~s~n~~~~Kl~~lSLlaVFK 239 (704)
T KOG2153|consen 212 LKELFEMLDSQNPKAKKLALLSLLAVFK 239 (704)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHH
Confidence 4445566778888888888888877654
No 264
>KOG4199|consensus
Probab=80.54 E-value=47 Score=33.57 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCC-ChHHH---HHHHHHHHHHHHHc--hhhhh--hhhhhHH
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDP-MPEVR---QSSFALLGDLTKAC--FSHVH--PCISDFM 420 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~-~~~vR---~~a~~~l~~la~~~--~~~~~--~~l~~ll 420 (592)
+....++-.|+.++ +..+|-.-+....=+..++.|+.|. ...+| +.++.+|..++-.- +..+. .-++.++
T Consensus 257 ~~L~~l~~tl~~lA--Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALA--VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHH
Confidence 33344455555553 2333322221133466778888773 34556 44555555554211 11111 1234455
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhH
Q psy9904 421 PILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPL 499 (592)
Q Consensus 421 p~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~ 499 (592)
..+.+.. +++.|++.++.++.-++.+.++.-..+++ ..-...++.++.--....+..|+|+.|..|..+..+.-.+|
T Consensus 335 ~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~ 412 (461)
T KOG4199|consen 335 TLALRHS--DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL 412 (461)
T ss_pred HHHHHcC--CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence 5554443 45789999999999999888876666665 23334445554322357788999999999987766554555
Q ss_pred h
Q psy9904 500 C 500 (592)
Q Consensus 500 ~ 500 (592)
+
T Consensus 413 l 413 (461)
T KOG4199|consen 413 L 413 (461)
T ss_pred H
Confidence 4
No 265
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=80.19 E-value=16 Score=33.95 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=61.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHH
Q psy9904 380 HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM 459 (592)
Q Consensus 380 ~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~ 459 (592)
+.+.....+++.=+|+.++.++...... ..+.+.++..+-..+.++.+-|+....|+|.+++...++.+..|+..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 7888888888999999998887665544 45678888999999998999999999999999998766666566554
Q ss_pred H
Q psy9904 460 V 460 (592)
Q Consensus 460 i 460 (592)
.
T Consensus 183 ~ 183 (197)
T cd06561 183 N 183 (197)
T ss_pred H
Confidence 3
No 266
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=79.84 E-value=12 Score=31.98 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred hhhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 93 ELLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
.+++.++|++...++ +.....|-++.+.+++++...+=. .+-+..++..+.+....... ...+.-+|..++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 568899999999998 778899999999999999876510 13456666666666665544 4456777777774
No 267
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=79.47 E-value=7.1 Score=32.35 Aligned_cols=62 Identities=3% Similarity=0.026 Sum_probs=56.0
Q ss_pred hhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHHHcCC
Q psy9904 410 SHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED-MRRYVPMVINQLIIIINRP 471 (592)
Q Consensus 410 ~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~-~~p~~~~il~~L~~~l~~~ 471 (592)
+.+.||++.++..+..++..-.++||.-|...|.-+..+.++. +..+...+++....++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4678999999999999998889999999999999999999988 7888899999999999865
No 268
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.37 E-value=12 Score=40.34 Aligned_cols=88 Identities=26% Similarity=0.322 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 72 DWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
+-+||+-+.+.|..++...++ .+...++.-+.+.+-|.++.+|.-|+.+|...-+-..+. ......++-.+++ +
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~~~vq--n 180 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLKDIVQ--N 180 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHh--c
Confidence 468999999999999998884 456778888888999999999999999999887644321 0111223333222 5
Q ss_pred CChHHHHHHHHHHH
Q psy9904 149 DKKALVRAITCWTL 162 (592)
Q Consensus 149 D~~~~VR~~a~~aL 162 (592)
||+..||.+|+--+
T Consensus 181 DPS~EVRr~allni 194 (885)
T COG5218 181 DPSDEVRRLALLNI 194 (885)
T ss_pred CcHHHHHHHHHHHe
Confidence 99999999987543
No 269
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=79.13 E-value=28 Score=30.65 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=56.6
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc------CChHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS------DKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~------D~~~~VR~~a~~aL~~l~~ 167 (592)
...+..|...++++++.+-.-|+..|.+++..|+..+...+ ..++.-+++.+. .+++.||.-.+..+..-++
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999999999997554333 335555666664 2578999988888887776
Q ss_pred Hhh
Q psy9904 168 WVV 170 (592)
Q Consensus 168 ~~~ 170 (592)
.+.
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 664
No 270
>KOG2213|consensus
Probab=78.79 E-value=22 Score=36.51 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLF 107 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~ 107 (592)
-.+|+.|.+.|-.++.+ +.++.+.+.+.++++
T Consensus 75 ~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 75 VGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN 106 (460)
T ss_pred hhhHHHHHhccchhccC---chhhhhHHHHHHHHH
Confidence 35899999999998886 556666666666665
No 271
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=78.65 E-value=1.3e+02 Score=34.57 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=34.7
Q ss_pred ccccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC
Q psy9904 69 SLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH 109 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~ 109 (592)
+..+.++|-|+...+..+=..+++-+.+.++..+.+....|
T Consensus 370 ~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P 410 (947)
T COG5657 370 TDYEVNVRPCIENELKDLFDVFGRIAVGHELTVIESEATTP 410 (947)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHhcCc
Confidence 44678899999999999988888767888999998888777
No 272
>KOG2973|consensus
Probab=78.09 E-value=7.4 Score=38.59 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=50.0
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 102 LKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 102 l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
+..++.++++.+|.+|+.-+-.+.-+....+..+-...++.+.++++|+.+ -+-|..+|.+++..
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 446678999999999997765555443455667778899999999999988 45567788888864
No 273
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.06 E-value=2.7 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.5
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 419 FMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 419 llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
.+|.|++.+..++.+++..|+|+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777777778999999999999875
No 274
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.05 E-value=24 Score=34.38 Aligned_cols=109 Identities=20% Similarity=0.246 Sum_probs=65.1
Q ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc-C----
Q psy9904 379 MHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKL-G---- 450 (592)
Q Consensus 379 ~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~-~---- 450 (592)
+|.+...-+.+ .+.+|-++++++|.+.+.-..++..|+ ..++|..++.++....-.+..|.+.+..|-..- |
T Consensus 97 yPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yi 176 (262)
T PF04078_consen 97 YPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYI 176 (262)
T ss_dssp HHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred hhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHH
Confidence 55554444332 367999999999999997777777776 369999999987666666777888777664221 1
Q ss_pred ----chhhhhHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHhhh
Q psy9904 451 ----EDMRRYVPMVINQLIIIIN-RPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 451 ----~~~~p~~~~il~~L~~~l~-~~~~~~~v~~na~~~lgrl~~ 490 (592)
+.|. .+..++..++..+. ++ ...+..+++.|.-|+..
T Consensus 177 C~t~eRf~-av~~vL~~mV~~l~~~p--S~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 177 CQTAERFF-AVAMVLNKMVEQLVKQP--SPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp TSSHHHHH-HHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTT
T ss_pred hcCHHHHH-HHHHHHHHHHHHHccCC--ChhHHHHHHHHHHHHcc
Confidence 1121 23334444443332 23 25666777777777764
No 275
>KOG2005|consensus
Probab=77.30 E-value=93 Score=34.49 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=49.0
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh--HHHHHHHHHHHHHHH
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK--ALVRAITCWTLSRYS 166 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~--~~VR~~a~~aL~~l~ 166 (592)
.++.+-+|..++++++..+|-++++.||..-.|... .++...|...+.|.+ ..|..-|..+||.+.
T Consensus 450 ~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~------e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~If 517 (878)
T KOG2005|consen 450 CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR------EEVLELLSPIMFDTKSPMEVVAFASLSLGMIF 517 (878)
T ss_pred cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch------HHHHHHHhHHhcCCCCchhHHHHHHhhcceeE
Confidence 478889999999999999999999999998877763 233334555566654 447777777777653
No 276
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=77.01 E-value=11 Score=42.51 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=73.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNP-DLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
.++..+-.++.. +.-|..++.+||.++..-+..+...+. .+++.|+++|.. .+..+...|+.+|--+.-.++..+.
T Consensus 70 ~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 70 HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 467788888875 578999999999999988887766655 588888888864 4667778899988888777788899
Q ss_pred hhHHHHHHHHHHHH
Q psy9904 455 RYVPMVINQLIIII 468 (592)
Q Consensus 455 p~~~~il~~L~~~l 468 (592)
+|++.++.....++
T Consensus 148 ~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 148 PHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888887
No 277
>KOG2973|consensus
Probab=76.90 E-value=40 Score=33.68 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=69.2
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhh-hhHH
Q psy9904 380 HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMR-RYVP 458 (592)
Q Consensus 380 ~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~-p~~~ 458 (592)
.-+...+.+.++.||+.|..-+..+...-+..+..|-...++.+.+.+.+..+ .+.|+.+++.++..-+ +. ..+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHH
Confidence 34567778889999999997666665555556677777888888888877665 5677888888876542 21 2334
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 459 MVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 459 ~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
.++..++.++-++. ....+-.|..+..+.
T Consensus 82 ~~~k~l~~~~~~p~--~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 82 DLLKVLMDMLTDPQ--SPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHhcCcc--cchHHHHHHHHHHhc
Confidence 46666777776654 344455555555544
No 278
>KOG1949|consensus
Probab=76.86 E-value=23 Score=39.19 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=82.3
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-----hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCM-----NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-----~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
-.-|.+-..++-++..+|-.|+..+-..----. +.+-..+..=...+..+|.|+-|.||+.|...+.++....=.
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 344566677788999999988877655432111 222334556667788999999999999998877776543211
Q ss_pred CCCccchHHHHHHHHcccc------CCcc----------------chhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 172 QPHDSYLKPLMTEMLGCMN------GMVP----------------HLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 172 ~~~~~~l~~ll~~Ll~~l~------~~vq----------------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
-.....+..+|..+...+. -|+. .|+.++|-+.+.|.|....||.++..-|.+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 1223445556666655551 1221 247788888888888888888876665543
No 279
>KOG1048|consensus
Probab=75.30 E-value=1.5e+02 Score=33.47 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhH-------HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh--CCCchH----
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYV-------PMVINQLIIIINRPNTPKTLLENTAITIGRLGYV--CPHDVA---- 497 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~-------~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~--~~~~~~---- 497 (592)
+..+.++++.+|-.++...+ .+..|+ +..++.|+.+|..++ ..|...++.+++.|... +.+.+.
T Consensus 532 n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~~ll~~~~--~~vv~s~a~~LrNls~d~rnk~ligk~a~ 608 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLVELLRNDD--SDVVRSAAGALRNLSRDIRNKELIGKYAI 608 (717)
T ss_pred chHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHHHHHhcCC--chHHHHHHHHHhhhccCchhhhhhhcchH
Confidence 45677788888877764332 223333 245688999998876 67888999999988753 222222
Q ss_pred h-HhhhcccCCC---c-hH-hHHHHHHHHHHHhhCchh
Q psy9904 498 P-LCSSLRNIRD---N-EE-KDSAFRGMCAMITVNPGG 529 (592)
Q Consensus 498 p-~~~~L~~~~d---~-~E-k~~a~~~l~~li~~~p~~ 529 (592)
| +++.|+.-.. . +| -..+...+-.++..|+..
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~n 646 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLN 646 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHH
Confidence 2 6777776433 1 12 344667777888766643
No 280
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=74.83 E-value=34 Score=31.05 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHchhhhhh------hh----hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHH
Q psy9904 391 PEVRQSSFALLGDLTKACFSHVHP------CI----SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMV 460 (592)
Q Consensus 391 ~~vR~~a~~~l~~la~~~~~~~~~------~l----~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~i 460 (592)
...|..++.++..+....|..|.. ++ ..+.|.+++++..+.+.+-..++..+..+....+..++.-++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666551 22 35778888887666688888888888888888777777778888
Q ss_pred HHHHHH-HHcCCCCCchHHHHHHHHHHHhh
Q psy9904 461 INQLII-IINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 461 l~~L~~-~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
++.+.. +++.+.....-++-+..++.+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 887777 55543322334555666666665
No 281
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=74.69 E-value=25 Score=33.39 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=47.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
.+.+.+.+...|++--.|.+|+.+.-...+. .....+...+...+.|++..|+.+.-|+|-.++..
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 3456777777888755666666543222221 23456777888899999999999999999998863
No 282
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.55 E-value=1.4e+02 Score=32.67 Aligned_cols=114 Identities=8% Similarity=0.080 Sum_probs=76.6
Q ss_pred CchHHHHHHHhCCC--ChHHHHHHHHHH---HHHHHHchhhhhhhh-hhHHHHHHhccC--------CCChhHHHHHHHH
Q psy9904 376 SNIMHLLYQCMQDP--MPEVRQSSFALL---GDLTKACFSHVHPCI-SDFMPILGQNLN--------PDLISVCNNATWA 441 (592)
Q Consensus 376 ~~l~~~l~~~l~~~--~~~vR~~a~~~l---~~la~~~~~~~~~~l-~~llp~l~~~l~--------~~~~~v~~~A~~~ 441 (592)
+.++.++..++... +..+|..++..+ ....++++.....-+ +.++..+...++ .+....|..+.-+
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 46677778888776 678999999999 888777766443222 222222222231 2356789999999
Q ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 442 IGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 442 Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
||.++.+.+..+..- -.++..|...|..+ ..+++-++-.|++.+....
T Consensus 398 lG~L~~~~p~l~~~d-~~li~~LF~sL~~~--~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKD-LSLIEFLFDSLEDE--SPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHHccCccccccc-HHHHHHHHHHhhCc--chHHHHHHHHHHHHHHHHH
Confidence 999999887655332 24666777777544 3778888888888877554
No 283
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.53 E-value=6.1 Score=37.46 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=58.9
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
...+.+...+++++.-+|..++.++-..... .+.+.++..+...+.++.+-|+....|+|.+++...++.+.+|
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4578888899999999999998766333322 5677888888889999999999999999999987766666666
Q ss_pred HHH
Q psy9904 457 VPM 459 (592)
Q Consensus 457 ~~~ 459 (592)
+..
T Consensus 194 l~~ 196 (213)
T PF08713_consen 194 LQK 196 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 284
>KOG3036|consensus
Probab=73.53 E-value=91 Score=30.20 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCc----hHHHHHHHhCC-CChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHh
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSN----IMHLLYQCMQD-PMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQ 425 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~----l~~~l~~~l~~-~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~ 425 (592)
.++-++..++..-... ..|+. .. +.|.+.....+ +.+..|-+++++||.+.+.-..++..|+- .++|..++
T Consensus 98 naL~LlQcvASHpdTr-~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 98 NALALLQCVASHPDTR-RAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHhcCcchH-HHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4666666666542211 11111 11 24444444433 35679999999999999998888877764 69999999
Q ss_pred ccCCCChhHHHHHHHHHHHHH
Q psy9904 426 NLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia 446 (592)
.+.......+..|.+.++.|.
T Consensus 176 ime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKIL 196 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHh
Confidence 988877777888888888765
No 285
>KOG0413|consensus
Probab=73.53 E-value=35 Score=39.22 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED 452 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~ 452 (592)
....|.|..+|.|+++-||+.++-+|++|... .+..|=..++--++-.+-|+++++|+-|-+.+|++...-...
T Consensus 1005 d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~ 1078 (1529)
T KOG0413|consen 1005 DRYIPMIAASLCDPSVIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPN 1078 (1529)
T ss_pred HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCcc
Confidence 34568899999999999999999999988753 333333444444444556778899999999999987654443
No 286
>KOG3961|consensus
Probab=73.42 E-value=11 Score=35.31 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=60.8
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
-..||.+...+..-+...|.-|-..+--+....++.+.|.+|+++..|-.+|..-+-.|...++.+|.++...
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 4577777777777777788888777777777777888899999999999999999999999999999888653
No 287
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.93 E-value=1.4e+02 Score=32.16 Aligned_cols=57 Identities=12% Similarity=-0.031 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCCh-hHHHHHHHHHHHHHhhchh
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDW-EIKESGILALGAIAEGCMN 130 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~-~~R~aa~~aLg~iaeg~~~ 130 (592)
+-|-.|+.-|......++-.-++.+......++....+ ..|++|+.-|-+++++...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~ 62 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS 62 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc
Confidence 45767777777777777656667777777777766544 6899999999999987654
No 288
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=72.02 E-value=92 Score=31.48 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=85.2
Q ss_pred HHHHHHHhhhh--hhhHhhhcc-CchHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhh-hhhhhhhHHHHHHhccCCC
Q psy9904 356 DLLSGLAEGLD--MHIDSLVSN-SNIMHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSH-VHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 356 d~l~~l~~~lg--~~~~~~~~~-~~l~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~ 430 (592)
.+++.+.+++. ..-.+++.. ..+..-+.+||+-. -..|-+.|+.+...+.+.+|.+ +...+.-+.|-++.-+...
T Consensus 30 s~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a 109 (307)
T PF04118_consen 30 SFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA 109 (307)
T ss_pred HHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH
Confidence 34555555554 222244421 24667788898643 3578999999999988887652 3333333334444434445
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
..+||-.-+-.+...-..++..+.|.++.++..+.+-++++. .+..+.+...+-++...
T Consensus 110 si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~--sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 110 SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEG--SEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCC--chHHHHHHHHHHHHHHh
Confidence 567887777777776667788889999999999999888653 45555555555555443
No 289
>KOG1525|consensus
Probab=72.01 E-value=2.4e+02 Score=34.39 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHc
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIIN 469 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~ 469 (592)
-..++.....++-+|-...+.. +-.++|.|...|..+...+|-.|...+|.+-..-+..+..-.+.++...+..+.
T Consensus 235 ~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~ 310 (1266)
T KOG1525|consen 235 QSSLKIKYHELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFN 310 (1266)
T ss_pred ccchhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhc
Confidence 3566777777887777765544 456888888889889999999999999998654443332334445555555554
Q ss_pred CCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 470 RPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 470 ~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
+-+ ..|+-.+...+..+..++|
T Consensus 311 D~~--~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 311 DIS--VEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred cCC--hhhhhhHHHHhHHHHhcCc
Confidence 332 4455444444444444444
No 290
>KOG1949|consensus
Probab=69.34 E-value=17 Score=40.14 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=71.8
Q ss_pred CCccccchHHHHHHHHHHHHHhhh----chhhhHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHH
Q psy9904 67 DSSLSDWNLRKCSAAALDVLANVF----REELLPVLLPILKETL-FHHDWEIKESGILALGAIAEGCMNGMVPHLNELVP 141 (592)
Q Consensus 67 ~~~~~~w~~Rk~aa~~L~~la~~~----~~~vl~~ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp 141 (592)
|+.|+ +|..|...+..+-..+ |+.++-.++..+..-+ .+....+|-+....|-.++...... +-+..++|
T Consensus 231 d~~p~---VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lp 305 (1005)
T KOG1949|consen 231 DPYPM---VRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLP 305 (1005)
T ss_pred CCCch---HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHH
Confidence 34554 8988887776666544 5666666777665444 4556689999999999888765432 56888999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
.+-..|.|...+||-|+..-|.++-.
T Consensus 306 al~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 306 ALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHh
Confidence 99999999999999999988887654
No 291
>KOG2199|consensus
Probab=69.24 E-value=50 Score=33.99 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=54.8
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcC
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLN-PDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
.+++..|.+.+++.++.|-..|+.+++.|+..||.-|..-+ .+|...+...+. ...+.||....-.+-+.+..++
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999998775332 245555555554 4566777665555555555443
No 292
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=69.17 E-value=24 Score=31.81 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh--HhhHHHHHHHhcc--
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH--LNELVPFLITCLS-- 148 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~--l~~lvp~l~~~L~-- 148 (592)
-++|..+..++..+-...++..-..+-.++...+.+.+....-.++.++.++--+.++....- -+.+++.+.....
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~ 98 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRK 98 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 348999999998886666666667778888888876655577778888888887777644433 2568888888877
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy9904 149 DKKALVRAITCWTLSRYS 166 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~ 166 (592)
..+..+..+++.+|..=|
T Consensus 99 ~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAAC 116 (157)
T ss_dssp TS-HHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 677888888888887654
No 293
>PF05536 Neurochondrin: Neurochondrin
Probab=69.14 E-value=1.1e+02 Score=33.66 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=104.9
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhH--hhhccCchHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHchhhhhhhhh-hHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHID--SLVSNSNIMHLLYQCMQDPMP-EVRQSSFALLGDLTKACFSHVHPCIS-DFMPI 422 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~--~~~~~~~l~~~l~~~l~~~~~-~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~ 422 (592)
...++..++..+++++. .+++. |-+ -.-+|.++.++...+. ++-..++.+|..++ ..++....++. ..+|.
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~ 144 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPA 144 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHH
Confidence 45677777777877765 22221 111 2457888888877766 88999999999999 44443333333 35566
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHhcCc----hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC---c
Q psy9904 423 LGQNLNPDLISVCNNATWAIGEISVKLGE----DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH---D 495 (592)
Q Consensus 423 l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~----~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~---~ 495 (592)
+.+.+.. .......|+..+..+....+. +-...+..+++.+...+...+ ...+-.++.-++.+....|- .
T Consensus 145 L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~ 221 (543)
T PF05536_consen 145 LCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPILPLE 221 (543)
T ss_pred HHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCccccc
Confidence 6555544 445567777777776655542 223455567777777776543 45666778888888776631 1
Q ss_pred hH--h-Hhhhc--------ccCCCchHhHHHHHHHHHHHhh
Q psy9904 496 VA--P-LCSSL--------RNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 496 ~~--p-~~~~L--------~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
.. + |...+ .+.-...+|..+..-...|+..
T Consensus 222 ~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 222 SPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred cCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 11 1 65433 2233455677777777777754
No 294
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=68.59 E-value=23 Score=28.28 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=47.1
Q ss_pred hcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHH
Q psy9904 106 LFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLS 163 (592)
Q Consensus 106 l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~ 163 (592)
.+.++..+|+-.+.++.++.+.+++.+..--+.++..+-...+|.+..+-..|..++.
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3456789999999999999999998877777888888888888877777666766654
No 295
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=68.58 E-value=1.7e+02 Score=31.18 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHhhhhhh---hHhhh-ccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-hhhhhhhhHHHHH
Q psy9904 349 DFMIVALDLLSGLAEGLDMH---IDSLV-SNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS-HVHPCISDFMPIL 423 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~---~~~~~-~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~-~~~~~l~~llp~l 423 (592)
+.....+-++..+.+..... |..+. ..+..+..++..++.++.-+...|+.+++.++..-.. .....++.++..+
T Consensus 69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l 148 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWL 148 (429)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 34445555555555544322 22110 0022333444466667778889999999988754322 1122333344445
Q ss_pred HhccCCC-ChhHHHHHHHHHHHHHHhcCchhhh-hH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC--C----
Q psy9904 424 GQNLNPD-LISVCNNATWAIGEISVKLGEDMRR-YV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP--H---- 494 (592)
Q Consensus 424 ~~~l~~~-~~~v~~~A~~~Lg~ia~~~~~~~~p-~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~--~---- 494 (592)
...++.. ....+..++.+++.+...- .++. |+ ...++.|.++|+.......+.-+++-|+=-+..... +
T Consensus 149 ~~~l~~~~~~~~~~~~v~~L~~LL~~~--~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 226 (429)
T cd00256 149 KEQLNNITNNDYVQTAARCLQMLLRVD--EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR 226 (429)
T ss_pred HHHhhccCCcchHHHHHHHHHHHhCCc--hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc
Confidence 5555432 3445566677787775422 2222 11 235677777776433234566666666555543321 0
Q ss_pred -chHh-HhhhcccCCCchHhH--HHHHHHHHHHhhC----chh------hhhhHHHHHHHhhccCCCchhHHHHHHHHHH
Q psy9904 495 -DVAP-LCSSLRNIRDNEEKD--SAFRGMCAMITVN----PGG------VVQEFIFFCDAVASWSTPKEDLKEMFHKILH 560 (592)
Q Consensus 495 -~~~p-~~~~L~~~~d~~Ek~--~a~~~l~~li~~~----p~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~ 560 (592)
.+-| ++..+.. ...||. .++..|-+++..+ +.. +...++.++..+..-+=.++|+.+.+..+-.
T Consensus 227 ~~~i~~l~~i~k~--s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e 304 (429)
T cd00256 227 LSLIQDLSDILKE--STKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTE 304 (429)
T ss_pred ccHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 1111 2233221 233443 3566666666532 111 1224555555554422245566665555444
Q ss_pred HHHhccCh-hhHHHHHhcC
Q psy9904 561 GFRTQVGD-ENWQRFADQF 578 (592)
Q Consensus 561 ~~~~~~~~-~~~~~~~~~l 578 (592)
.+.+.+-. ..|+.+.+++
T Consensus 305 ~L~~~~k~ltsfD~Y~~El 323 (429)
T cd00256 305 ELKNSVQDLSSFDEYKSEL 323 (429)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 43332211 2377666543
No 296
>KOG4500|consensus
Probab=68.03 E-value=17 Score=37.86 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=53.0
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh---chhchh-hhHhhHHHHHHH-hccCChHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEG---CMNGMV-PHLNELVPFLIT-CLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg---~~~~i~-~~l~~lvp~l~~-~L~D~~~~VR~~a~~aL~~l~ 166 (592)
|.++.++..++.|.+....-+|.+|+|.++.. |...+. ..++.++..+-+ .--|-+.+++.++|.||-++.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 66999999999999999999999999999974 444333 334455555444 334567888899988888875
No 297
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=67.31 E-value=1e+02 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHHHHH-HHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHH
Q psy9904 395 QSSFALLGDLT-KACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIG 443 (592)
Q Consensus 395 ~~a~~~l~~la-~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg 443 (592)
+.|+..+.+|. ...++-+.|++..++|.+.+.|.++.. -.+-+|.|+
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LA 107 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLA 107 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHH
Confidence 77888888888 667788899999999999999987642 234445443
No 298
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.11 E-value=65 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISD 418 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~ 418 (592)
..++..|.+.+++.++.+..-|+.+|..|++.+|+.|..++..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3578899999999999999999999999999999988876643
No 299
>KOG1851|consensus
Probab=67.03 E-value=34 Score=41.45 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhhc-hhhhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCCh
Q psy9904 75 LRKCSAAALDVLANVFR-EELLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~-~~vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
..++|+.|.+..+.... ....+.++..+.+... +..|++|.+.+.-+..+.-... ..-..+...|...+...|.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 35667788888887765 6788889988886444 4579999997776666543211 2334678899999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9904 152 ALVRAITCWTLSRYSH 167 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~ 167 (592)
-.||.-|..+|+-+-.
T Consensus 1583 i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999887653
No 300
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=66.96 E-value=58 Score=29.49 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhH------hhhc--cCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHH
Q psy9904 350 FMIVALDLLSGLAEGLDMHID------SLVS--NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMP 421 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~------~~~~--~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp 421 (592)
.+..+++++..+.+.-|..|. ++.. ...+.+.+++.+...+..+-..++.++..+...++..++.-++.+++
T Consensus 38 ~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~ 117 (168)
T PF12783_consen 38 SKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLS 117 (168)
T ss_pred HHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888776665 2221 13566777777766678888899999999998888888777777777
Q ss_pred HHHh-ccCCCC--hhHHHHHHHHHHHHHH
Q psy9904 422 ILGQ-NLNPDL--ISVCNNATWAIGEISV 447 (592)
Q Consensus 422 ~l~~-~l~~~~--~~v~~~A~~~Lg~ia~ 447 (592)
.++. .+..+. ..-|.-++.++..++.
T Consensus 118 ~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 118 HIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7776 344333 3456667777777764
No 301
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.25 E-value=33 Score=27.33 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHH
Q psy9904 387 QDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAI 442 (592)
Q Consensus 387 ~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~L 442 (592)
+..+.++|+..+.++..+....+..+..-.+.++..+-...++++.++...|..++
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44678999999999999999999988888888888888887777777777776654
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=64.48 E-value=27 Score=39.45 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhc
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQN 426 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~ 426 (592)
...|..++-+|+.+++.-+.+.-..+ +..+++-|++||. |.+..+-..|+.+|-.|.=.++..+.+||+.++.++...
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~-~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKIL-QTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHh-cChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 35678899999999987766654444 3679999999987 456777788998998888888889999999999988776
Q ss_pred c
Q psy9904 427 L 427 (592)
Q Consensus 427 l 427 (592)
+
T Consensus 161 ~ 161 (668)
T PF04388_consen 161 L 161 (668)
T ss_pred H
Confidence 5
No 303
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=64.42 E-value=16 Score=39.91 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=68.0
Q ss_pred hHHHHHHHHH---HHHHhhhchhhhHhHHHHHHH----hh--------cCCChhHHHHHHHHHHHHHhhchhchhhhHhh
Q psy9904 74 NLRKCSAAAL---DVLANVFREELLPVLLPILKE----TL--------FHHDWEIKESGILALGAIAEGCMNGMVPHLNE 138 (592)
Q Consensus 74 ~~Rk~aa~~L---~~la~~~~~~vl~~ll~~l~~----~l--------~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~ 138 (592)
.+|..+..-+ ......++..++..+-|.|.. .+ .+.+-..|..+..+||.++...+..+..- -.
T Consensus 336 klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~ 414 (501)
T PF13001_consen 336 KLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LS 414 (501)
T ss_pred ccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HH
Confidence 4555555555 455555554444443333322 12 23457889999999999999988765333 46
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 139 LVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 139 lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
++..++..|.++.+.||.+.-.||+.++..+.+
T Consensus 415 li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 415 LIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred HHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 888888888999999999999999999988764
No 304
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=64.26 E-value=46 Score=28.28 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 414 PCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 414 ~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
.+++.++|.+.+.+. ....+.+-.+.-.++.++...+=+ ...+..++..+....... .....+..|+..+....
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~----~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQE----TVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccc----hhHHHHHHHHHHHHHcc
Confidence 367889999999998 667888989999999998766411 123444444444433322 22456778888877655
No 305
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=63.33 E-value=55 Score=28.05 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=38.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHH
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMP 421 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp 421 (592)
.++..|.+.|++.++-|+.-++.+|.-|+....+.|...+..=..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 678999999999999999999999999999888888777665433
No 306
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=63.28 E-value=59 Score=30.19 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=55.3
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..++-++++..+++..+|..|+.+++-+.+.. -..| ...+|.++....+++..+|+.|...+.++..+.++
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 34566667777889999999999998887632 2222 34788888888889999999999999999877654
No 307
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=62.81 E-value=20 Score=32.60 Aligned_cols=101 Identities=13% Similarity=0.161 Sum_probs=59.1
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh----hhHHHHHHhccCCCChhHHHHHHHHHHHHH-HhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI----SDFMPILGQNLNPDLISVCNNATWAIGEIS-VKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l----~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia-~~~~~ 451 (592)
.+=|+++.||+. .+++.+.+..|+.+..+.-..+..+= +.+...++..- ...+ .-|.....++. .-.++
T Consensus 3 eikplLIsCL~~--q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 3 EIKPLLISCLTM--QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGE 76 (174)
T ss_pred chHHHHHHHHHh--hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhh
Confidence 355788999976 45678888888888766544432111 22222222211 1111 34555555555 22445
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q psy9904 452 DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGR 487 (592)
Q Consensus 452 ~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgr 487 (592)
-+.|++..+++.+.+.|.+|.. -++-+|.++-
T Consensus 77 fl~~~~~~L~~~~~~~L~~p~~----~d~~~W~LAl 108 (174)
T PF04510_consen 77 FLIPFMENLLPEISKVLLPPEE----VDVEDWVLAL 108 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCchh----ccHHHHHHHH
Confidence 5789999999999999987642 2344454443
No 308
>KOG2122|consensus
Probab=62.49 E-value=2.4e+02 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=48.0
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 418 DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP--MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 418 ~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
..+..|++.|+.....|..|+|.+|-.+...... .+.++- ..++.|.+++.+.+ +.+.+.++.++-.+..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKh--kMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKH--KMIAMGSAAALRNLLN 601 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhh--hhhhhhHHHHHHHHhc
Confidence 4778888889988889999999998887655443 334432 45666777776544 5666666666666543
No 309
>KOG0803|consensus
Probab=62.16 E-value=54 Score=39.75 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhhhhhhH-hhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC
Q psy9904 351 MIVALDLLSGLAEGLDMHID-SLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP 429 (592)
Q Consensus 351 ~~~ald~l~~l~~~lg~~~~-~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~ 429 (592)
...++..++.++........ ..+ +....+..++.-+.+..||..+...+..+...++..++||+..++|..+-..-+
T Consensus 58 K~KaL~eL~eli~~~~~e~~~~il--~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d 135 (1312)
T KOG0803|consen 58 KIKALQELSELIDTSDTEELKGIL--PEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFD 135 (1312)
T ss_pred HHHHHHhHHHhcccccchHHhhhH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecc
Confidence 34567777777765543211 112 223455667778999999999999999999999999999999999999887776
Q ss_pred CChhHHHHHHHHH
Q psy9904 430 DLISVCNNATWAI 442 (592)
Q Consensus 430 ~~~~v~~~A~~~L 442 (592)
.++.|...|....
T Consensus 136 ~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 136 LDYPVSEAAKASF 148 (1312)
T ss_pred cchHHHHHHHHHH
Confidence 6666655544433
No 310
>KOG0889|consensus
Probab=62.15 E-value=82 Score=41.70 Aligned_cols=136 Identities=17% Similarity=0.252 Sum_probs=81.1
Q ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHH
Q psy9904 279 LIQKWNILKDEDKDLFPLLECLSSVATALQAGFLP-YCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDL 357 (592)
Q Consensus 279 L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~p-y~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~ 357 (592)
+.+..+.+.|.+.....=+..+..+...+...|.| +.. +++.+++.+...+.+..... ..+.+..+.|...++.
T Consensus 7 l~q~~~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~-~l~~~ip~~l~~l~~~~~~~----~~~~~~~~lR~~~Lei 81 (3550)
T KOG0889|consen 7 LEQRSRRLVDVNLPIESKLKMLVEIRDFLENLFSPESYL-FLEMLIPLLLNFLENTEKSF----SAESPEQELRNLVLEI 81 (3550)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHhcccCchh----hhcCcHHHHHHHHHHH
Confidence 33333344443332222233334444444443333 222 45566666666654321100 1123456778888888
Q ss_pred HHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHH
Q psy9904 358 LSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423 (592)
Q Consensus 358 l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l 423 (592)
+..+.. .+.|.||. ..++..++..+..++.+.-.-++.+++++.+..+..+...+..++..+
T Consensus 82 l~r~~~--~e~~~~~~--~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V 143 (3550)
T KOG0889|consen 82 LNRLPH--NEVFKPFS--QELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIV 143 (3550)
T ss_pred HHhccc--HHHHHHHH--HHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 777643 36789998 678999999999999888889999999999987766555555444443
No 311
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=61.08 E-value=37 Score=37.29 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhhhHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhch-hchh-hhHhhHHHHHHHhccCChHHHHHH
Q psy9904 81 AALDVLANVFREELLPVLLPILKETL-FHHDWEIKESGILALGAIAEGCM-NGMV-PHLNELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 81 ~~L~~la~~~~~~vl~~ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~-~~i~-~~l~~lvp~l~~~L~D~~~~VR~~ 157 (592)
..++.+-..+.++.+..++-.+...+ .++.-.+|-+.+.=|+.+++-.. +..+ +.++.+...+-..|.|.+|.|+..
T Consensus 463 ~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ 542 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQH 542 (559)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHH
Q ss_pred HHHHHHHHHH
Q psy9904 158 TCWTLSRYSH 167 (592)
Q Consensus 158 a~~aL~~l~~ 167 (592)
|+.|+|+||+
T Consensus 543 ALeAF~~FAe 552 (559)
T PF14868_consen 543 ALEAFGQFAE 552 (559)
T ss_pred HHHHHHHHhc
No 312
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=60.97 E-value=2.3e+02 Score=30.23 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcC------chhhhhHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP-DLISVCNNATWAIGEISVKLG------EDMRRYVPMVIN 462 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~------~~~~p~~~~il~ 462 (592)
..+||+.-...+-.+++..+.-+...-..++..+.+.-+. ...++-..-+|++||.+-... +.+..|++.+=-
T Consensus 281 ~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~ 360 (459)
T PF14764_consen 281 QAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEA 360 (459)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHH
Confidence 4678887777777777777766554444555555433222 245677899999999764432 235556665444
Q ss_pred HHHHHHcCC--------CCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 463 QLIIIINRP--------NTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 463 ~L~~~l~~~--------~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
.+.++.+.. .....+.-..+.++.+++..+++.
T Consensus 361 llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl 401 (459)
T PF14764_consen 361 LLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDL 401 (459)
T ss_pred HHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhh
Confidence 455555543 112445556678888888887764
No 313
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=60.84 E-value=86 Score=28.07 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhh
Q psy9904 295 PLLECLSSVATALQA-GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLV 373 (592)
Q Consensus 295 ~~~e~l~~ia~~~g~-~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~ 373 (592)
.+++|+-.++..+.+ .|.|.+- +++.. +...-++...........+...++..++..++.=|.||+
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~----~l~dW---------A~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~ 106 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFL----KLVDW---------ATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYF 106 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHH----HHHHH---------HcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766654 4655433 22222 111111111122344456777889999999998899998
Q ss_pred ccCchHHHHHHHhCCCC----------hHHHHHHHHHHHHHHHH
Q psy9904 374 SNSNIMHLLYQCMQDPM----------PEVRQSSFALLGDLTKA 407 (592)
Q Consensus 374 ~~~~l~~~l~~~l~~~~----------~~vR~~a~~~l~~la~~ 407 (592)
.-+++.....|+..+ ..++...+.+|..+..+
T Consensus 107 --~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 107 --SYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred --HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 567776666664322 46666666666665554
No 314
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=60.72 E-value=93 Score=30.04 Aligned_cols=82 Identities=22% Similarity=0.160 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc-
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETL-FHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS- 148 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~- 148 (592)
..|....+.+.++..++...|+ ..+.+++.+.+.+ ++.+...+-.|+.++..+.+.---.+.+...-+.+ .|+
T Consensus 96 ~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~----~l~~ 170 (234)
T PF12530_consen 96 EFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK----KLSL 170 (234)
T ss_pred chHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hcCC
Confidence 3577888888889999988887 6778888888888 67777778888888888775444333344444444 443
Q ss_pred CChHHHHHH
Q psy9904 149 DKKALVRAI 157 (592)
Q Consensus 149 D~~~~VR~~ 157 (592)
+..|.|-..
T Consensus 171 ~~rp~v~~~ 179 (234)
T PF12530_consen 171 DYRPLVLKS 179 (234)
T ss_pred ccchHHHHH
Confidence 334555443
No 315
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=60.69 E-value=30 Score=31.16 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHhC--CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh-h-
Q psy9904 381 LLYQCMQ--DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR-Y- 456 (592)
Q Consensus 381 ~l~~~l~--~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p-~- 456 (592)
.++..+. ...+++|..+.-++..+....++.+...+..++..++..- ..+-..+++.++..+-...++-... |
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv~~~l~~ 83 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDVGSELFL 83 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3444443 2467899999999999887777777777777766666332 2233445555554442111110011 1
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh--CCCch----HhHhhhcccCCCchH--hHHHHHHHHH
Q psy9904 457 VPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV--CPHDV----APLCSSLRNIRDNEE--KDSAFRGMCA 521 (592)
Q Consensus 457 ~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~--~~~~~----~p~~~~L~~~~d~~E--k~~a~~~l~~ 521 (592)
-+.+++.+.++..+...++.+...++.++.--+.. +...+ .+|+..+-...+++. |.-|.-+||+
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 12445555555552222244444444444433221 11122 237766654333332 5556666664
No 316
>KOG0803|consensus
Probab=60.62 E-value=22 Score=42.82 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=61.8
Q ss_pred hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy9904 94 LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 165 (592)
Q Consensus 94 vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l 165 (592)
++|.......+.+.|++..+|.+...++..+..++.+.++||+..++|..+-+-.|....|-.+|..++-..
T Consensus 80 il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 80 ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhh
Confidence 345555566677889999999999999999999999999999999999999999999888888877766543
No 317
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=57.68 E-value=9.1 Score=30.72 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy9904 154 VRAITCWTLS 163 (592)
Q Consensus 154 VR~~a~~aL~ 163 (592)
-|.++.|.||
T Consensus 89 a~~a~~~g~~ 98 (101)
T PF09026_consen 89 ARQASVRGIG 98 (101)
T ss_dssp ----------
T ss_pred chhhcccccc
Confidence 3455555554
No 318
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=57.22 E-value=35 Score=26.28 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhh-hchhhhH--hHHHHHHHhh-cCCChhHHHHHHHHHHHHHhh
Q psy9904 76 RKCSAAALDVLANV-FREELLP--VLLPILKETL-FHHDWEIKESGILALGAIAEG 127 (592)
Q Consensus 76 Rk~aa~~L~~la~~-~~~~vl~--~ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg 127 (592)
.|+|.-+++.++.. +|-..++ .+++.+.+.. +++.|.+|=.++.+||-|+..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 68889999999874 5545444 4666665555 478899999999999999863
No 319
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=54.44 E-value=2.9e+02 Score=29.25 Aligned_cols=55 Identities=13% Similarity=-0.062 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHHHhhhch-----hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE-----ELLPVLLPILKETLFHHDWEIKESGILALGAIA 125 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~-----~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~ia 125 (592)
..|.--.-....|-++....+. .+-..++..|...+.|+|++.|......|-.+-
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy 161 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIY 161 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4576655666666666655442 133455555666667777777765444444433
No 320
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=54.11 E-value=1e+02 Score=26.73 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=39.4
Q ss_pred hhhhhhHHHHHHhccCCCC----hhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHH
Q psy9904 413 HPCISDFMPILGQNLNPDL----ISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITI 485 (592)
Q Consensus 413 ~~~l~~llp~l~~~l~~~~----~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~l 485 (592)
....+.++..+.+.+.... .++...++.+++....-.+.. ... ..+++.+...+..+. +++.|+.||
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--~i~~~~~l~~~~~~l~~~~----~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE--LIINSNLLNLIFQLLQSPE----LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH--HHHSSSHHHHHHHHTTSCC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH--HhccHHHHHHHHHHcCCHH----HHHHHHHhC
Confidence 3345556666666554322 567778888888876544321 112 237777788886543 577777764
No 321
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=53.58 E-value=52 Score=30.94 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch
Q psy9904 381 LLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED 452 (592)
Q Consensus 381 ~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~ 452 (592)
.+-..|+-+....-..++.+++.+...++....|++..++..+.+.-+++..+.++.+=.++|.....+|.+
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 334445555566778888999999999998888888888888877766677888999999999998888854
No 322
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=52.11 E-value=87 Score=28.66 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=40.6
Q ss_pred ChhHHHHHHHHHHHHHhhch--hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 110 DWEIKESGILALGAIAEGCM--NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 110 ~~~~R~aa~~aLg~iaeg~~--~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
+...-...+.+|-+|...-. ..+. ..+..+..|..+|..+++.+|..++..|+.+|
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~-~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVL-SHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHH-CSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHH-cCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44566778888888876332 2222 24778999999999999999999999998876
No 323
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=51.47 E-value=1.8e+02 Score=26.00 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhchhhhHhHHHHHHHhhc-------CCChhHHHHHHHH-HHHHHhhchhchhhhHhhHHHHHHHhccC
Q psy9904 78 CSAAALDVLANVFREELLPVLLPILKETLF-------HHDWEIKESGILA-LGAIAEGCMNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 78 ~aa~~L~~la~~~~~~vl~~ll~~l~~~l~-------s~~~~~R~aa~~a-Lg~iaeg~~~~i~~~l~~lvp~l~~~L~D 149 (592)
.+..++-.+.-.+.+..+.|++-.+..+.. ......|..+..- +..+++.....+.+|...+++.....|+.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888777776666666553 2334556655544 56677877777889999999988888865
Q ss_pred Ch----------HHHHHHHHHHHHHHHHH
Q psy9904 150 KK----------ALVRAITCWTLSRYSHW 168 (592)
Q Consensus 150 ~~----------~~VR~~a~~aL~~l~~~ 168 (592)
.+ +..+...+.+|.+...+
T Consensus 120 ~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 120 FNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 43 57777777777776654
No 324
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=50.93 E-value=13 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=9.4
Q ss_pred CCccccchHHHHHHHH
Q psy9904 67 DSSLSDWNLRKCSAAA 82 (592)
Q Consensus 67 ~~~~~~w~~Rk~aa~~ 82 (592)
++...-|+.+.+.+..
T Consensus 119 ~sd~~~WtP~~~t~~~ 134 (458)
T PF10446_consen 119 GSDYEFWTPGATTAAT 134 (458)
T ss_pred cccceeeccccccccc
Confidence 3455668887554443
No 325
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=49.51 E-value=3.3e+02 Score=28.40 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhh----hhhHhhhccCchHHHHHHHhC--CCChHHHHHHHHHHHHHHHHch
Q psy9904 352 IVALDLLSGLAEGLD----MHIDSLVSNSNIMHLLYQCMQ--DPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 352 ~~ald~l~~l~~~lg----~~~~~~~~~~~l~~~l~~~l~--~~~~~vR~~a~~~l~~la~~~~ 409 (592)
..++..|..+.+.++ ....-.+ ..+.+-+++|+- ++.+.+|..+..++..+.+.+.
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~--~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLL--RLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHH--HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 455666666666642 1111222 234555555543 4468899999999999998876
No 326
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=47.41 E-value=1.7e+02 Score=27.71 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
.+.+.+.....+++.=+|..|+...-...+ .. -.+.+...+...++++.+=|+...-|+|-+++..-...+..|
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~----~~--~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLKYKE----KT--DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cc--CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 345777888888888888888754222111 11 235566677778888888899999999999998766666667
Q ss_pred HHH
Q psy9904 457 VPM 459 (592)
Q Consensus 457 ~~~ 459 (592)
+..
T Consensus 189 l~~ 191 (208)
T cd07064 189 VAA 191 (208)
T ss_pred HHH
Confidence 654
No 327
>KOG3036|consensus
Probab=46.92 E-value=2.8e+02 Score=26.98 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=59.3
Q ss_pred CChhHHHHHHHHHHH-HHhhch---hchhhhHhh-HHHHHHHhccC-ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q psy9904 109 HDWEIKESGILALGA-IAEGCM---NGMVPHLNE-LVPFLITCLSD-KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLM 182 (592)
Q Consensus 109 ~~~~~R~aa~~aLg~-iaeg~~---~~i~~~l~~-lvp~l~~~L~D-~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll 182 (592)
+.-..|-+-+++|=+ +|.+.. .++..|+|- +.|++....++ |....|-++.-.+|.+.+.-. ++ ++
T Consensus 90 ~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd----~e----Vi 161 (293)
T KOG3036|consen 90 PAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDD----QE----VI 161 (293)
T ss_pred ccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCc----HH----HH
Confidence 334567666666555 444332 255566654 66777666655 456788887777777765421 11 33
Q ss_pred HHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 183 TEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 183 ~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.-|+. .+++|++..+++.-....+..|+..++++
T Consensus 162 ~fLl~---------TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 162 RFLLT---------TEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHHHH---------hhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33333 68999999998655555555555555543
No 328
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=46.48 E-value=2.3e+02 Score=29.01 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=54.4
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHH--Hchhhhhhhhh--hHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTK--ACFSHVHPCIS--DFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~--~~~~~~~~~l~--~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
+.++.....+++..+.-.|..++.+||++.. +...-...|+. .-+..++..|++....++-.|.-..--.+.
T Consensus 208 d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 208 DRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 4677888889999999999999999999973 33444455664 578888999999998899888887776543
No 329
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=43.49 E-value=4e+02 Score=27.73 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 389 PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 389 ~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
.+..+-...+.++-.+....+..+.......+|.++..+-+....+|..|.-.+-++...++
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~ 207 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG 207 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC
Confidence 35667777888888888888888888888888888888777777788776555444555444
No 330
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=43.31 E-value=3.4e+02 Score=26.78 Aligned_cols=91 Identities=22% Similarity=0.202 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhH
Q psy9904 355 LDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434 (592)
Q Consensus 355 ld~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v 434 (592)
-|.+..++..+.+.|.|-.. .+++-.++..+.+....+|..++.+|.-+..+..-. .|+-++++..+++-++.+.
T Consensus 167 ~dfl~~v~~~l~~~f~P~~~-~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~--- 241 (262)
T PF14225_consen 167 DDFLSQVVSYLREAFFPDHE-FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDL--- 241 (262)
T ss_pred HHHHHHHHHHHHHHhCchhH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCcc---
Confidence 35566677777777765442 467788889998888999999999999888776444 4577788888888887654
Q ss_pred HHHHHHHHHHHHHhcC
Q psy9904 435 CNNATWAIGEISVKLG 450 (592)
Q Consensus 435 ~~~A~~~Lg~ia~~~~ 450 (592)
+..|...|-++....|
T Consensus 242 ~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 242 WMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3456666655554444
No 331
>KOG3723|consensus
Probab=42.60 E-value=4.9e+02 Score=28.49 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=51.6
Q ss_pred HhCCCChHHHHHHHH-------HHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 385 CMQDPMPEVRQSSFA-------LLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 385 ~l~~~~~~vR~~a~~-------~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
.|.+....+-++.+. +++.+...-++.+.||+|.+++.|.+. .+. ...++..+-.+...- -...+
T Consensus 163 LL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~----~p~-~~~ll~~l~~LI~Qk---~~evL 234 (851)
T KOG3723|consen 163 LLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQL----EPE-QYHLLRLLHVLIKQK---QLEVL 234 (851)
T ss_pred hccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCC----CHH-HHHHHHHHHHHHHhc---cHHHH
Confidence 344433444444444 455555666778899999999888763 211 122333333333221 12346
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 458 ~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
++.+|.|...+.+.+. .+++-|++.-|...+
T Consensus 235 ~~ciP~L~g~l~ds~~-~~i~~~Ilk~ia~~~ 265 (851)
T KOG3723|consen 235 QKCIPFLIGHLKDSTH-NDIILNILKEIAVYE 265 (851)
T ss_pred HHHHHHHHHHhccccc-hhHHHHHHHHHHhcC
Confidence 6677777777765442 455555555544444
No 332
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=41.98 E-value=7.1e+02 Score=30.19 Aligned_cols=64 Identities=11% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHh
Q psy9904 383 YQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVK 448 (592)
Q Consensus 383 ~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~ 448 (592)
-+|.. .++.+-..-|.++.++...... ..-....++...+-.+.++..+||..|+..|..+-..
T Consensus 510 drCYs-s~~~va~gYF~vlaev~~~~~~-~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 510 DRCYS-SSPRVAEGYFTVLAEVFSEREY-PPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHhcC-CChhHHHHHHHHHHHHHHcCCC-CCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 34443 3555655556555554432111 1112457888888889999999999999988877544
No 333
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=41.89 E-value=1.3e+02 Score=30.38 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCCC---ChHHHHHHHHHHHHHHHHchhhh
Q psy9904 349 DFMIVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQDP---MPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~~---~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
.++....-++-++.++... .-+.|+....+++.++..+-++ +..+.|+.|++||++.+.....|
T Consensus 112 ~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 112 SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAF 179 (303)
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHH
Confidence 3444455566666666554 3455665567888777766543 35799999999999998776544
No 334
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=40.92 E-value=1.8e+02 Score=25.63 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=46.0
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcC
Q psy9904 105 TLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 105 ~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
.|+.+.....+||-+||.. .++ -+.+++.+++.|.+++-..|..-++-+..+++.....
T Consensus 16 ~L~aS~qSi~kaa~fAlk~--~~~-------~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~ 74 (139)
T PF12243_consen 16 RLNASQQSIQKAAQFALKN--RDM-------EEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKS 74 (139)
T ss_pred HcchhHHHHHHHHHHHHHc--ccc-------HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhc
Confidence 3444455678888888876 333 3578999999999999999999999999999887653
No 335
>KOG1087|consensus
Probab=40.84 E-value=2.2e+02 Score=30.70 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=60.8
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCCC--ChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNPD--LISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~~--~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
.....|.+.+++.++.+..-|+.+|..|++.||..|...+. .|++-+++..... ...||+-++-.|-.....+++
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 45778888999888999999999999999999999875443 5888888887544 567999888888887776654
No 336
>PHA02836 putative transmembrane protein; Provisional
Probab=40.11 E-value=31 Score=29.49 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=28.1
Q ss_pred HHHHHHHHhhch-hchhhhHhhHHHHHHHhccCC
Q psy9904 118 ILALGAIAEGCM-NGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 118 ~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~ 150 (592)
+-.+|.++|-|+ ..+..|++.++|.+...|.|.
T Consensus 108 iG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 108 IGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 344788999998 578899999999999999885
No 337
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=38.67 E-value=2.3e+02 Score=23.56 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhh-HHHHHHHhccCChHHHHHH
Q psy9904 79 SAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 79 aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~-lvp~l~~~L~D~~~~VR~~ 157 (592)
....|..+|.... ..-+.+...+.+.+....+..|-.++..+..|+..+......++.. +.+.+.......++.+|..
T Consensus 20 ~I~~lt~~a~~~~-~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~k 98 (114)
T cd03562 20 SIQTLTKLAIENR-KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKK 98 (114)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3344444444332 2234556666666666677899999999999999987544444333 3566666666666777754
Q ss_pred HH
Q psy9904 158 TC 159 (592)
Q Consensus 158 a~ 159 (592)
..
T Consensus 99 l~ 100 (114)
T cd03562 99 LE 100 (114)
T ss_pred HH
Confidence 33
No 338
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=38.31 E-value=37 Score=19.94 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=15.4
Q ss_pred hhHHHHHHHhccCChHHHHHH
Q psy9904 137 NELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 137 ~~lvp~l~~~L~D~~~~VR~~ 157 (592)
..|+|++.+.|++++-.+|-+
T Consensus 2 ~~IVpyi~~~L~N~~LAl~lA 22 (24)
T PF09268_consen 2 ENIVPYILNTLQNPDLALRLA 22 (24)
T ss_dssp TTHHHHHHHTT--HHHHHHHH
T ss_pred ccchhHHHhccCCHHHHHHHh
Confidence 368999999999998777654
No 339
>KOG2229|consensus
Probab=37.46 E-value=3.5e+02 Score=29.18 Aligned_cols=133 Identities=15% Similarity=0.136 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh-hHHHHHHHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR-YVPMVINQLIIII 468 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p-~~~~il~~L~~~l 468 (592)
.-++|...+.+|+.+.-... =++=.+.|.|.+.+.+.-.+|.+.... .++.+.+.+-| .++.++..+.+.+
T Consensus 251 r~E~klm~~~lisRliG~Hk----L~l~~fY~fl~~yl~phqrDvTqIl~~----aaQa~Hd~VP~d~iEpl~k~Ian~F 322 (616)
T KOG2229|consen 251 RFEVKLMLMKLISRLIGIHK----LFLFGFYPFLQRYLQPHQRDVTQILAA----AAQASHDLVPPDIIEPLLKTIANNF 322 (616)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHhhhHHHHHHHcCcchhhHHHHHHH----HHHhccCCCChHHhhHHHHHHHHHh
Confidence 45677777777777654322 134457788888888776665543222 22323222211 3344455555554
Q ss_pred cCCCCCchHHHHHHHHHHHhhhhCCCchHh-HhhhcccCCCchHhH--HHHHHHHHHHh-hCchhh
Q psy9904 469 NRPNTPKTLLENTAITIGRLGYVCPHDVAP-LCSSLRNIRDNEEKD--SAFRGMCAMIT-VNPGGV 530 (592)
Q Consensus 469 ~~~~~~~~v~~na~~~lgrl~~~~~~~~~p-~~~~L~~~~d~~Ek~--~a~~~l~~li~-~~p~~~ 530 (592)
-+....+.+.--.+.++-.++..+|..+.+ .++-|...+..++|. .|-+++..++. .+|..+
T Consensus 323 VtD~~spEv~~vgiN~iREic~RvplaMteeLLqDLa~YK~sk~K~V~maarSLI~L~Rev~P~mL 388 (616)
T KOG2229|consen 323 VTDENSPEVMAVGINAIREICERVPLAMTEELLQDLASYKTSKKKVVMMAARSLIALYREVLPDML 388 (616)
T ss_pred cccCCCcceeehhhhHHHHHHhhcchhhcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 443333444444556677888888876666 666666555454443 37788888885 688654
No 340
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=37.42 E-value=77 Score=20.38 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHH
Q psy9904 116 SGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVR 155 (592)
Q Consensus 116 aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR 155 (592)
+|+++||-+.-|..+ .+++..|.+.+.|.+..+|
T Consensus 1 gA~lgLGl~~aGs~~------~~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 1 GAILGLGLIYAGSGN------EEVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHHTTTT--------HHHHHHHHHHHCTSSHHHH
T ss_pred CcHHHHHHHHcCCCC------HHHHHHHHHHHHhcccccc
Confidence 578999998877654 2577777788888766554
No 341
>KOG1222|consensus
Probab=37.40 E-value=5.5e+02 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh--HhhHHHHHHHhccCC
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH--LNELVPFLITCLSDK 150 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~--l~~lvp~l~~~L~D~ 150 (592)
+..+..++..+++..|.+.+..+-.++-..+ +++. -..++|.+...|.+.
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~g--lr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSG--LRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhcccccc--ccHHHhhccchHHHHHHhCCc
Confidence 3344455567788899999888877764322 2222 245788888888765
No 342
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=36.93 E-value=2.2e+02 Score=27.26 Aligned_cols=91 Identities=19% Similarity=0.167 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhh--hhhH----hhhccCchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHH
Q psy9904 352 IVALDLLSGLAEGLD--MHID----SLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPI 422 (592)
Q Consensus 352 ~~ald~l~~l~~~lg--~~~~----~~~~~~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~ 422 (592)
-.++.++..++..=. ..|. ||+ +.+.+...-+ .+...+|-++++++|.+.+.-.+.+..++- .++|.
T Consensus 118 cnaL~lLQclaShPetk~~Fl~Ahiplf----lypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLF----LYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeeccccee----eHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 456777777765422 1221 221 2344332222 234678999999999999988887777764 59999
Q ss_pred HHhccCCCChhHHHHHHHHHHHHH
Q psy9904 423 LGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 423 l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
+++-++....-.+..|++.+|.|.
T Consensus 194 cLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 998876665555667777777654
No 343
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=36.89 E-value=11 Score=29.43 Aligned_cols=7 Identities=43% Similarity=0.354 Sum_probs=0.0
Q ss_pred ccccccc
Q psy9904 31 PRFHKSK 37 (592)
Q Consensus 31 ~~~~~~~ 37 (592)
|.=+|+|
T Consensus 8 PiGRkgk 14 (81)
T PF14812_consen 8 PIGRKGK 14 (81)
T ss_dssp -------
T ss_pred ccCcCCC
Confidence 4334443
No 344
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=71 Score=34.46 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=46.6
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH--HHHHHHHHHHHHH
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA--LVRAITCWTLSRY 165 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~--~VR~~a~~aL~~l 165 (592)
.|+.+-++.+++++++-..|-||++.||..-.|... .+++..+.....+.+. .|..-|..+||.+
T Consensus 448 ~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~------eevl~lL~Pi~~std~pie~~~~asltLg~v 514 (881)
T COG5110 448 RPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA------EEVLELLQPIMFSTDSPIEVVFFASLTLGSV 514 (881)
T ss_pred cchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH------HHHHHHhhhhhcCCCCcHHHHHHHHHhhhhe
Confidence 478999999999999999999999999998888763 2344444444444333 4555566666654
No 345
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=36.02 E-value=1.1e+02 Score=30.50 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=17.8
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHH
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFL 143 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l 143 (592)
+..++..+...++..........+-.|..+.+.+. .+.++++++.-.+
T Consensus 201 lk~~~~~i~~~~k~~~~~~~~~~v~~Ld~L~~~~~-~i~~~VDel~~sl 248 (275)
T PF13324_consen 201 LKKLLRAITKLLKSEKPSDSPEQVAQLDKLLDLCQ-EISPSVDELASSL 248 (275)
T ss_dssp HHHHHHHHHHH---------TT-HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccChhhHHHHHHHHHHHH-HhhhHHHHHHHHh
Confidence 33344444455433333333344445666665553 2344444444433
No 346
>KOG4500|consensus
Probab=35.95 E-value=5.6e+02 Score=27.22 Aligned_cols=86 Identities=7% Similarity=0.096 Sum_probs=55.8
Q ss_pred hhhh-hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh----hhhhhhHHHHHHhc-cCCCChhHHHHH
Q psy9904 365 LDMH-IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV----HPCISDFMPILGQN-LNPDLISVCNNA 438 (592)
Q Consensus 365 lg~~-~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~----~~~l~~llp~l~~~-l~~~~~~v~~~A 438 (592)
+|.+ +.-+.+.++++..+..++...+.+....+.-++|++++.-...+ ..++..++..+.+. --+.+..+.-.+
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 4544 33344446799999999999889998888889999987533222 12344455555542 234455566677
Q ss_pred HHHHHHHHHhcC
Q psy9904 439 TWAIGEISVKLG 450 (592)
Q Consensus 439 ~~~Lg~ia~~~~ 450 (592)
+.+|..++....
T Consensus 382 lsALRnl~IPv~ 393 (604)
T KOG4500|consen 382 LSALRNLMIPVS 393 (604)
T ss_pred HHHHHhccccCC
Confidence 888888775544
No 347
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.65 E-value=53 Score=27.79 Aligned_cols=30 Identities=23% Similarity=0.080 Sum_probs=26.3
Q ss_pred hHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 138 ELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 138 ~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
=.++.++..|.|+++.|+.+|...|...|.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 368889999999999999999888888775
No 348
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=35.49 E-value=1.5e+02 Score=25.03 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHHHHhcCc---hhhhhHHHHHHHHHHHHcCCCC--CchHHHHHHHHHHHhhhhCCCchHhHhh
Q psy9904 431 LISVCNNATWAIGEISVKLGE---DMRRYVPMVINQLIIIINRPNT--PKTLLENTAITIGRLGYVCPHDVAPLCS 501 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~---~~~p~~~~il~~L~~~l~~~~~--~~~v~~na~~~lgrl~~~~~~~~~p~~~ 501 (592)
+++-...|+..+-.+.+.-.. ++..+...++..|+.+=++-+. -...+.||+.++.- ..|..++||+.
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v---~~P~~~~~~L~ 90 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVV---AAPEKVAPYLT 90 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHH---HSGGGHHH-HH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHH---HhhHHHHHHHH
Confidence 466667788888888766544 7888999998888876443221 25677777776554 45888888553
No 349
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=35.46 E-value=4.3e+02 Score=25.76 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred CchHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhh-hhhhhHHHHHHhccCCCChhHHHHHHHHHHHHH------H
Q psy9904 376 SNIMHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVH-PCISDFMPILGQNLNPDLISVCNNATWAIGEIS------V 447 (592)
Q Consensus 376 ~~l~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~-~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia------~ 447 (592)
.++.++....++.. +..++..=-.++-.++-.+...-+ ..+..+.+.+...-...........-....++. +
T Consensus 30 ~qlW~l~~~g~q~~~~~q~w~ewW~lWRRiAGGL~~~qQ~~l~~~ia~~l~p~~~~~~~~~~~~~~~~~~emvRl~asLE 109 (249)
T PF12531_consen 30 EQLWKLYQQGIQFPKDAQVWSEWWTLWRRIAGGLNEGQQEQLFDDIAPYLQPAAQRNRKKPKGPQPQSYDEMVRLAASLE 109 (249)
T ss_pred HHHHHHhhcccCCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcccccccccccccCccCHHHHHHHHHhhc
Confidence 35667777777765 677887777888888876654322 223344444432211110000001111112221 2
Q ss_pred hcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 448 KLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 448 ~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
.++.+. =..+...+++.|+.+..+ ...-||||||+...|
T Consensus 110 rL~~~~---K~elg~wll~rL~~~~~~----~~~wWAlGRlgaR~p 148 (249)
T PF12531_consen 110 RLPVED---KIELGEWLLKRLQKPSES----AQHWWALGRLGARVP 148 (249)
T ss_pred cCCHHH---HHHHHHHHHHHhcCCCCC----cchHHHHHHHHhcCc
Confidence 222111 124556666667765422 234599999998765
No 350
>KOG1048|consensus
Probab=35.28 E-value=1.8e+02 Score=32.94 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=59.4
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHH--HHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC--c
Q psy9904 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMV--INQLIIIINRPNTPKTLLENTAITIGRLGYVCPH--D 495 (592)
Q Consensus 420 lp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~i--l~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~--~ 495 (592)
+|..+..|...++.+..||..-+.-++.. ...++.-+.++ ++.|+.+|.++. .+|..+||+|+-.+...... .
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfg-d~~ik~~vrqlggI~kLv~Ll~~~~--~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFG-DNKIKSRVRQLGGIPKLVALLDHRN--DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhh-hHHHHHHHHHhccHHHHHHHhcCCc--HHHHHHHHHHHHhhhcccCCccc
Confidence 44444555566777888887777776632 23344444433 678889998765 88999999999999875433 1
Q ss_pred -h--H------hHhhhcccCCCchHhHH
Q psy9904 496 -V--A------PLCSSLRNIRDNEEKDS 514 (592)
Q Consensus 496 -~--~------p~~~~L~~~~d~~Ek~~ 514 (592)
+ . ..++.|+...|.+-+..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~ 339 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVREL 339 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHH
Confidence 1 1 14556666666665544
No 351
>KOG1848|consensus
Probab=35.14 E-value=9.5e+02 Score=29.64 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccC-------chHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNS-------NIMHLLYQCMQDPMPEVRQSSFALLGDLTK 406 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~-------~l~~~l~~~l~~~~~~vR~~a~~~l~~la~ 406 (592)
+++..+.+-.|++|++-..++|..+...+ .++..+.....+.++++.-+++..+-.+..
T Consensus 1067 kqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1067 KQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 44556788899999999888886665432 455666666678889999999987777654
No 352
>KOG2038|consensus
Probab=34.62 E-value=3e+02 Score=31.28 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=83.1
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
++++.|-....++-..||..++..+.+|...-+++- ..++..+++.+.++...+...|.+.|-.+.... .+|+-.
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~H-PnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKH-PNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhC-Ccceee
Confidence 455666666677788999999999999988766653 357888999999999999999998887765433 345444
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC-chHh
Q psy9904 457 VPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH-DVAP 498 (592)
Q Consensus 457 ~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~-~~~p 498 (592)
+ +..+..++=.+++....+--|.+++..+..++.+ .++.
T Consensus 379 v---i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAn 418 (988)
T KOG2038|consen 379 V---IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVAN 418 (988)
T ss_pred h---HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHH
Confidence 3 3444455556776677777888899999888754 3443
No 353
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.54 E-value=3.5e+02 Score=24.51 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la 405 (592)
+.+....++.|+..|...- .++.-.+..+..+..|..++..++..+|..++.+|+.+|
T Consensus 129 ~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4455556777877776532 234445555788999999999999999999999998876
No 354
>KOG2122|consensus
Probab=34.45 E-value=1e+03 Score=29.80 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=71.3
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhh--hhhHHHHHHhccCCCC----hhHHHHHHHHHHHHHHhc--Cch
Q psy9904 381 LLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPC--ISDFMPILGQNLNPDL----ISVCNNATWAIGEISVKL--GED 452 (592)
Q Consensus 381 ~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~--l~~llp~l~~~l~~~~----~~v~~~A~~~Lg~ia~~~--~~~ 452 (592)
+..-.++......-++.+.+|=+|+.+|-+.=..+ ++.-|.+|+..|..+. -.+..+|-..|-.+...+ .+.
T Consensus 442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 33334455555566777888888888875433332 5678888888887653 234445544444433222 122
Q ss_pred hhhhH--HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 453 MRRYV--PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 453 ~~p~~--~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
....+ ..++..|+..|+... -.+.-|+|+||-.|...+|++
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~S--LTiVSNaCGTLWNLSAR~p~D 564 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARSPED 564 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhcc--eEEeecchhhhhhhhcCCHHH
Confidence 32223 367888888888655 678889999999999988864
No 355
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.38 E-value=6.3e+02 Score=27.36 Aligned_cols=60 Identities=25% Similarity=0.301 Sum_probs=36.1
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC-ChhHHHHHHHHHHHHHHh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD-LISVCNNATWAIGEISVK 448 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~-~~~v~~~A~~~Lg~ia~~ 448 (592)
+.+|.++++.+.-+.++.+...+.+|.+ ..+++.|+..|+++ ...+..||+..|.+|...
T Consensus 33 ~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred cHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677777777765555555555555422 34566666666544 345666777777776543
No 356
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=34.21 E-value=5.1e+02 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=18.1
Q ss_pred hHHHHHH--HHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy9904 433 SVCNNAT--WAIGEISVKLGEDMRRYVPMVINQLIII 467 (592)
Q Consensus 433 ~v~~~A~--~~Lg~ia~~~~~~~~p~~~~il~~L~~~ 467 (592)
-.|.|.+ .+++...+..| .+|+..++..++.-
T Consensus 73 LFRgNSl~TK~~~~y~r~~G---~~YL~~~L~pvI~~ 106 (315)
T cd05128 73 LFRGNSLASKSMEEFMKLAG---MHYLHVTLKPIIDK 106 (315)
T ss_pred HhcCCcHHHHHHHHHHHHhH---HHHHHHHHHHHHHH
Confidence 3455443 46666665544 34777777666643
No 357
>KOG0772|consensus
Probab=33.83 E-value=32 Score=36.54 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=8.1
Q ss_pred CCCCCCCCCcccccccc
Q psy9904 22 IPDRDEDIRPRFHKSKR 38 (592)
Q Consensus 22 ~~d~~~~~~~~~~~~~~ 38 (592)
.+|--.+.-|.+-..|.
T Consensus 106 ee~~mgplPP~~~~~~~ 122 (641)
T KOG0772|consen 106 EEDFMGPLPPKKLGSKS 122 (641)
T ss_pred hhhhcCCCCchhccCcc
Confidence 33333455666554443
No 358
>KOG0943|consensus
Probab=33.76 E-value=31 Score=40.48 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHH
Q psy9904 512 KDSAFRGMCAMI 523 (592)
Q Consensus 512 k~~a~~~l~~li 523 (592)
|..+|+.++++.
T Consensus 2741 RLaafRniGRIl 2752 (3015)
T KOG0943|consen 2741 RLAAFRNIGRIL 2752 (3015)
T ss_pred HHHHHHhhhhHh
Confidence 344444444443
No 359
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=32.94 E-value=1.8e+02 Score=29.69 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHH-----hhchhchhhhHhhHHHHHHHhcc
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIA-----EGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~ia-----eg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
....+...++..=...++.++-+.++..+...+++....+|++-+.++|.+. ......+.+.++.++..+-+...
T Consensus 38 ~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 117 (339)
T PF12074_consen 38 AALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASA 117 (339)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy9904 149 DKKALVRAITCWTLSRYS 166 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~ 166 (592)
.|.+........+-..+.
T Consensus 118 ~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 118 NPLQSAQNGELVGAYVLL 135 (339)
T ss_pred CCCCccccccHHHHHHHH
No 360
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.52 E-value=1.9e+02 Score=25.50 Aligned_cols=79 Identities=27% Similarity=0.330 Sum_probs=39.5
Q ss_pred hhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHH---HHHHHHHHHHHHhcccCCChhhHh
Q psy9904 197 NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLL---ILYDAIGTLADSVGHHLNKPEYIS 273 (592)
Q Consensus 197 ~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~---~~~dai~~la~~~g~~~~~~~y~~ 273 (592)
+++-.++..++.+.+..++..|..++-.|- .||+.|.=+..+++. ..-|.+.++.-.-+.....++.=+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k--------~~~l~pY~d~L~~Lldd~~frdeL~~f~~~~~~~~I~~ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK--------DPYLTPYKDNLENLLDDKTFRDELTTFNLSDESSVIEEEHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHhHHHHHHHHcCcchHHHHHHhhcccCCcCCCCHHHHh
Confidence 344455566677777777777777766551 122222211222221 223455555433332223345666
Q ss_pred hhhHHHHHHH
Q psy9904 274 LLMPPLIQKW 283 (592)
Q Consensus 274 ~lmp~L~~~~ 283 (592)
.+||.++..+
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 361
>PTZ00479 RAP Superfamily; Provisional
Probab=31.13 E-value=4.6e+02 Score=27.69 Aligned_cols=64 Identities=6% Similarity=0.005 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhh
Q psy9904 432 ISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCS 501 (592)
Q Consensus 432 ~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~ 501 (592)
+.--.+..|++|.+-.. + .+++..+++...+.|.+ ....-.-+++||++|+....+..+..++.
T Consensus 97 Pqqig~Ilyg~gKsr~~-~---~efy~~~~~~v~~~L~~--fssh~L~~i~wALsrL~Ird~~fL~~~ak 160 (435)
T PTZ00479 97 PQQIGYIFYGYGKSRFL-N---PEFYEKMLKFVQPLLPN--FYSHSLMCIAWALNRVQIRDEAFLSRFAK 160 (435)
T ss_pred HHHHHHHHHHHHHHhcc-C---HHHHHHHHHHHHHHhhh--cCccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34445667777765432 2 23566667766666643 22445567888888888776555544444
No 362
>KOG4199|consensus
Probab=30.79 E-value=6.1e+02 Score=26.05 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHhh--hhhhhHhhhccCchHHHHHHHhC--CCChHHHHHHHHHHHHHHHHchhhhhhhhhh-HHHH
Q psy9904 348 KDFMIVALDLLSGLAEG--LDMHIDSLVSNSNIMHLLYQCMQ--DPMPEVRQSSFALLGDLTKACFSHVHPCISD-FMPI 422 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~--lg~~~~~~~~~~~l~~~l~~~l~--~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~-llp~ 422 (592)
++....++.+|..++.. +++++.. ..-.+.+...+. ..++.|-+.++.++.-++-..+.+-..+++. .-..
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~----~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~ 376 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVE----KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADL 376 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHH----hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHH
Confidence 33445666677766643 2222221 222333332221 2468899999999999987777766666653 3333
Q ss_pred HHhccC--CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 423 LGQNLN--PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 423 l~~~l~--~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.++.++ +-...|..||||.+..|+.+..+.-.+++..=+..|+..-...+ +.....+-.++..+|-
T Consensus 377 avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h--~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 377 AVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH--ETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC--ccHHHHHHHHHHhcCc
Confidence 444443 33457889999999999988777777788777777777655443 5555555567777773
No 363
>KOG1823|consensus
Probab=30.34 E-value=1.1e+03 Score=29.01 Aligned_cols=75 Identities=17% Similarity=0.062 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHhhch-hchhh-hHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcc
Q psy9904 111 WEIKESGILALGAIAEGCM-NGMVP-HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGC 188 (592)
Q Consensus 111 ~~~R~aa~~aLg~iaeg~~-~~i~~-~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~ 188 (592)
.+.|.+...++-.+.-+.+ +.+.- +++.++--+...+...+..+|.++-.+|+++...+++ +|+.-++..+...
T Consensus 535 i~~~~~~~~~~~~~~~~l~~~~i~~~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~----~yl~~Vi~el~~T 610 (1364)
T KOG1823|consen 535 IRNRLSIAEALVFLVLFLGNAEIVLRNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGP----KYLYFVIKELQTT 610 (1364)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHhcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Confidence 4445555555555555555 34443 6999999999999999999999999999999999875 4566666655555
Q ss_pred c
Q psy9904 189 M 189 (592)
Q Consensus 189 l 189 (592)
+
T Consensus 611 l 611 (1364)
T KOG1823|consen 611 L 611 (1364)
T ss_pred H
Confidence 4
No 364
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=30.18 E-value=67 Score=30.47 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHH
Q psy9904 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAI 157 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~ 157 (592)
....+..++..|++..... ...+..+..|+..|....-+||..
T Consensus 104 ~~~~~~~~~~~l~~~~~~i--kl~~k~id~L~~~lr~~~~~Ir~~ 146 (211)
T PF04546_consen 104 DSKKYQKLREELAEEFMEI--KLSPKQIDRLVEQLREIVERIRQQ 146 (211)
T ss_dssp -SHHHHHHHHHHHHHHTTC--EE-HHHHHHHCHHHHCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777787766542 345778888888888888888864
No 365
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=30.16 E-value=6.4e+02 Score=26.13 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHchhhhhhh-hhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHc
Q psy9904 391 PEVRQSSFALLGDLTKACFSHVHPC-ISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIIN 469 (592)
Q Consensus 391 ~~vR~~a~~~l~~la~~~~~~~~~~-l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~ 469 (592)
.++....+..|+.|+.+.. .|.+. -+.++..+...+... ....++-+|.-.+..++..+.++++.++..|.++..
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 6777788888888876532 22222 346777777777653 334456666666777788899999999988888765
Q ss_pred CCC
Q psy9904 470 RPN 472 (592)
Q Consensus 470 ~~~ 472 (592)
++.
T Consensus 287 t~~ 289 (356)
T PF03542_consen 287 TPN 289 (356)
T ss_pred chh
Confidence 543
No 366
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=29.88 E-value=84 Score=26.96 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=38.0
Q ss_pred hHHHHHHHhhccC-C-CchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q psy9904 533 EFIFFCDAVASWS-T-PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRD 584 (592)
Q Consensus 533 ~~~~~~~~i~~~~-~-~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 584 (592)
....|+.-|++.. . +..+.......++.-++..++++.+..+.++||++.+.
T Consensus 70 ~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l~~~v~~ge~~~v~~~LP~~~~~ 123 (125)
T PF10025_consen 70 DLDEFLARVAERLGGADEDDAERLARAVFAALREAVSEGEFEDVRSQLPKDLRE 123 (125)
T ss_dssp SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHHHHHS-HHHHHHHHHTS-HHHHT
T ss_pred CHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Confidence 4567777777743 2 33367778888999999999988999999999998764
No 367
>KOG2759|consensus
Probab=28.71 E-value=7.2e+02 Score=26.25 Aligned_cols=275 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhh-hHhhHHHHHHHhccC-ChHHH
Q psy9904 77 KCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVP-HLNELVPFLITCLSD-KKALV 154 (592)
Q Consensus 77 k~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~-~l~~lvp~l~~~L~D-~~~~V 154 (592)
+.........+.......+++.++++ .+++|..-+-+...++.++.-....+.. -+.-....+...++. .++.-
T Consensus 98 ~sr~~lf~~~a~~~k~~~~~~fl~ll----~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~ 173 (442)
T KOG2759|consen 98 RSRVDLFHDYAHKLKRTEWLSFLNLL----NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDY 173 (442)
T ss_pred chHHHHHHHHHHhhhccchHHHHHHH----hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCch
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchH----HHHHHHHccccCCcc----------chh------------hhHHHHHHhcC
Q psy9904 155 RAITCWTLSRYSHWVVSQPHDSYLK----PLMTEMLGCMNGMVP----------HLN------------ELVPFLITCLS 208 (592)
Q Consensus 155 R~~a~~aL~~l~~~~~~~~~~~~l~----~ll~~Ll~~l~~~vq----------~l~------------~l~p~l~~il~ 208 (592)
+..|..||..+... ++.+..+.. .++-.++..-....| -|. .++|-|..|++
T Consensus 174 ~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk 251 (442)
T KOG2759|consen 174 IQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVK 251 (442)
T ss_pred HHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHH
Q ss_pred chhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHh------cccCCChhhHhhhhHHHHHH
Q psy9904 209 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSV------GHHLNKPEYISLLMPPLIQK 282 (592)
Q Consensus 209 d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~------g~~~~~~~y~~~lmp~L~~~ 282 (592)
+.. ..|..|.++..+..+.+.. +.... +-+..=+++-++.
T Consensus 252 ~~~--------------------------------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~--~mv~~~v~k~l~~ 297 (442)
T KOG2759|consen 252 EST--------------------------------KEKVTRIVLAIFRNLLDKGPDRETKKDIAS--QMVLCKVLKTLQS 297 (442)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHhccCchhhHHHHHHH--HHHhcCchHHHHH
Q ss_pred HhhcccCCccchHHHHHHHHHHHHHhh------ccccccHHHHH---------------------------HHHHHHHHH
Q psy9904 283 WNILKDEDKDLFPLLECLSSVATALQA------GFLPYCEPVYR---------------------------RCVSLIEQT 329 (592)
Q Consensus 283 ~~~~~d~~~~~~~~~e~l~~ia~~~g~------~f~py~~~v~~---------------------------~~~~~l~~~ 329 (592)
++..+-+|.+ +.+-+..+-..++. .|-.|...+.. .++++|.+.
T Consensus 298 L~~rkysDED---L~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~l 374 (442)
T KOG2759|consen 298 LEERKYSDED---LVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKL 374 (442)
T ss_pred HHhcCCCcHH---HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHH
Q ss_pred HHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q psy9904 330 LNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKA 407 (592)
Q Consensus 330 l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~ 407 (592)
|+. ..|+-....|+.=|+..++..... ...+++-.-=+.++..+++++++||-.|+.++-.|..+
T Consensus 375 Le~------------s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 375 LET------------SNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred Hhc------------CCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
No 368
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.60 E-value=3.3e+02 Score=22.62 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=32.9
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISD 418 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~ 418 (592)
+.++..+.+.+....+.-|-.++-++.++++.++.....++..
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH
Confidence 4567777777777777889999999999999987765544443
No 369
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=28.45 E-value=5.8e+02 Score=25.09 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=53.2
Q ss_pred HHHHHH-HHHHHHHhhhc-------hhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHH
Q psy9904 75 LRKCSA-AALDVLANVFR-------EELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHL--NELVPFL 143 (592)
Q Consensus 75 ~Rk~aa-~~L~~la~~~~-------~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l 143 (592)
-|-|.+ ..|..+|..-. ..+--.+.|++....++. --..|-+++-.+|+++..-...+-.++ .+++|..
T Consensus 65 nRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 455555 33556665432 123346788886554442 246799999999999986554444554 5688888
Q ss_pred HHhccCChHHHHHHHHHHHHHHH
Q psy9904 144 ITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 144 ~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
++.+.--+...+..|..-+.++-
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH
Confidence 88777666666666655555543
No 370
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=28.05 E-value=3.9e+02 Score=23.51 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.9
Q ss_pred hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-ch--hhhhHHHHHHHHHHHHc
Q psy9904 415 CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-ED--MRRYVPMVINQLIIIIN 469 (592)
Q Consensus 415 ~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~--~~p~~~~il~~L~~~l~ 469 (592)
.-+.+.+.+++.++.++...|.|..|.+..++.... .. ..+|++.+-..|..++.
T Consensus 37 ~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~~dL~~Iv~ 94 (139)
T PF12243_consen 37 MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQRDLPRIVD 94 (139)
T ss_pred cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 346788899999998888999999999998876543 22 45677665555555543
No 371
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=27.58 E-value=2.8e+02 Score=29.02 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccC-C---CChhHHHHHHHHHHHHHHhcC--chhhhhHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLN-P---DLISVCNNATWAIGEISVKLG--EDMRRYVPMVIN 462 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~-~---~~~~v~~~A~~~Lg~ia~~~~--~~~~p~~~~il~ 462 (592)
.+.+--.|+.++.++...-+..+.-.-+ .+.+.+++++. . ...++-...--++|.||.+-. +.|+.+ ..++
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~ 199 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLD 199 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHH
Confidence 4566666777777777665544432221 24555555554 2 345566666677888775542 334432 5666
Q ss_pred HHHHHHcCCCCC-----chHHHHHHHHHHHhhhhCCC
Q psy9904 463 QLIIIINRPNTP-----KTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 463 ~L~~~l~~~~~~-----~~v~~na~~~lgrl~~~~~~ 494 (592)
.+++++.+++-- +....+...++-.++.++|.
T Consensus 200 ~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 200 KLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 777777654311 12223333444455555554
No 372
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.50 E-value=2.6e+02 Score=24.85 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=41.3
Q ss_pred cccCCCchHhHHHHHH---HHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcC
Q psy9904 503 LRNIRDNEEKDSAFRG---MCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQF 578 (592)
Q Consensus 503 L~~~~d~~Ek~~a~~~---l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l 578 (592)
++...|.+|+..-|.. ++.-....+........+|..++.-|.+| ..||+-|++.+|.+.|+-+++.+
T Consensus 77 ~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP--------~~LL~iyq~tlP~~Vf~~lia~~ 147 (148)
T TIGR00985 77 APDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP--------QQLLSIYQQTLPEPIFRLMIAQL 147 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH--------HHHHHHHHhhCCHHHHHHHHhhc
Confidence 3344566666665543 33333334434445667788888877666 45677788888876677555544
No 373
>PHA03128 dUTPase; Provisional
Probab=25.57 E-value=26 Score=35.42 Aligned_cols=19 Identities=16% Similarity=0.089 Sum_probs=12.6
Q ss_pred CCCCCCCccccchHHHHHH
Q psy9904 62 DDLDDDSSLSDWNLRKCSA 80 (592)
Q Consensus 62 ~~~~d~~~~~~w~~Rk~aa 80 (592)
|+++||++...|+.|+.+-
T Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (376)
T PHA03128 345 ETEEDEKSSDAESPVNTSD 363 (376)
T ss_pred ccccccccccccCccccce
Confidence 3445666777788887654
No 374
>KOG1087|consensus
Probab=25.25 E-value=5.8e+02 Score=27.55 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=58.4
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHhhc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSDK--KALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D~--~~~VR~~a~~aL~~l~~~~~~ 171 (592)
+.+.-.|...+++.+..+..-|+..|-.++..|+..+.-++ ..+++-++...+.. .-.||..++..|..-.+.+.+
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 46777888888988888888888899999999998765443 45777777777654 567999888888877776655
No 375
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=25.21 E-value=7.9e+02 Score=25.59 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=78.5
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCCC--ChhHHHHHHHHHHHHHHhcCchhhhhHHHHH
Q psy9904 385 CMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNPD--LISVCNNATWAIGEISVKLGEDMRRYVPMVI 461 (592)
Q Consensus 385 ~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~~--~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il 461 (592)
.+.+ +.+||.+++.++--+.... ..+..+.. ++--.+..++.-+ +..-|..|+..+-.+...-+ ....+-..++
T Consensus 34 lL~~-~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vv 110 (371)
T PF14664_consen 34 LLSD-SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVV 110 (371)
T ss_pred HCCC-cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHH
Confidence 4444 5999999999886555432 11222222 1222344455433 23346778888777765422 2223345788
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh------HhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 462 NQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP------LCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 462 ~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p------~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
..++.+.++++ ...+.-+..|+..++..+|+.+.. ..+.+.. ...+-......+|..++.
T Consensus 111 ralvaiae~~~--D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 111 RALVAIAEHED--DRLRRICLETLCELALLNPELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHhCCc--hHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhC
Confidence 88898888765 678888899999999999976533 3334332 112223445556666654
No 376
>PRK04964 hypothetical protein; Provisional
Probab=25.15 E-value=2.2e+02 Score=20.97 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred cCchhhhhHHHHHHHHHHHHc----CCCCCchHHHHHHHHHHHhhhh
Q psy9904 449 LGEDMRRYVPMVINQLIIIIN----RPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 449 ~~~~~~p~~~~il~~L~~~l~----~~~~~~~v~~na~~~lgrl~~~ 491 (592)
+|+.=..|+|+.+...++.|+ ++..+.++++.|+-+-..+..+
T Consensus 15 IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLliS 61 (66)
T PRK04964 15 IGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLVS 61 (66)
T ss_pred hcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhh
Confidence 343345688888877777765 4556789999999888777643
No 377
>PHA02836 putative transmembrane protein; Provisional
Probab=25.13 E-value=94 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHchh-hhhhhhhhHHHHHHhccCCC
Q psy9904 395 QSSFALLGDLTKACFS-HVHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 395 ~~a~~~l~~la~~~~~-~~~~~l~~llp~l~~~l~~~ 430 (592)
-.-++++|-+++.+|. ....|++.+||.+.+-+++.
T Consensus 105 LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 105 LTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 3455677777888875 57789999999999988765
No 378
>KOG3678|consensus
Probab=24.77 E-value=7.5e+02 Score=26.49 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=71.6
Q ss_pred chHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHchhhhhhhhhhH-HHHHHhccCC-CChhHHHHHHHHHHHHHHhcCch
Q psy9904 377 NIMHLLYQCMQDPM--PEVRQSSFALLGDLTKACFSHVHPCISDF-MPILGQNLNP-DLISVCNNATWAIGEISVKLGED 452 (592)
Q Consensus 377 ~l~~~l~~~l~~~~--~~vR~~a~~~l~~la~~~~~~~~~~l~~l-lp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~~ 452 (592)
.-+.+++..+..++ ..||..+-.+|..+...-.-+ |+..+ +..++..-+. +..+........||.+-.+..+.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d---~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRD---RVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhh---HHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 44667777777664 467988888887775432211 11111 1222221111 22333344445555544333221
Q ss_pred hhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchH---------hHhhhcccCCCchHhHHHHHHHHHH
Q psy9904 453 MRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA---------PLCSSLRNIRDNEEKDSAFRGMCAM 522 (592)
Q Consensus 453 ~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~---------p~~~~L~~~~d~~Ek~~a~~~l~~l 522 (592)
-...+. ..+..++--.. ..++.+...++-++|.++.+....+. .|+-.|.--+|.--|..|..+.|.+
T Consensus 257 ~~~Lvaa~~lD~vl~~~r--Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCR--RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHhhcccchheeecc--cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 111111 11111111112 23478889999999999987654332 2765554444444466666666665
Q ss_pred Hh
Q psy9904 523 IT 524 (592)
Q Consensus 523 i~ 524 (592)
+.
T Consensus 335 at 336 (832)
T KOG3678|consen 335 AT 336 (832)
T ss_pred hh
Confidence 53
No 379
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.41 E-value=1.5e+02 Score=26.92 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=34.3
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV 133 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~ 133 (592)
+....++|.+...++|....+..+|+..|..|.....+.|.
T Consensus 65 d~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 65 DLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999998877665443
No 380
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.40 E-value=8.2e+02 Score=25.10 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=69.6
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh----hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI----SDFMPILGQNLNPDLISVCNNATWAIGEISVKLG- 450 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l----~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~- 450 (592)
++.+..+....+.++-+|-..|+.++.++....+.....|+ +.+.....+.+..+++-+|.-++..||++...=.
T Consensus 163 ~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 163 SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 34445566778888999999999999998877665555554 4677777777888999999999999999863211
Q ss_pred -chhhhhHH--HHHHHHHHHHcCCCCCchHHHHH
Q psy9904 451 -EDMRRYVP--MVINQLIIIINRPNTPKTLLENT 481 (592)
Q Consensus 451 -~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na 481 (592)
.-|..|+. .-+..++.+|+++. ++++-.|
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~d~s--k~Iq~eA 274 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLRDKS--KNIQFEA 274 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHhcCcc--hhhhHHH
Confidence 22344543 34555566665543 4555444
No 381
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=23.36 E-value=2.6e+02 Score=23.16 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhchh---chhhhHhhHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 114 KESGILALGAIAEGCMN---GMVPHLNELVPFLITC--LSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 114 R~aa~~aLg~iaeg~~~---~i~~~l~~lvp~l~~~--L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
|..-+..+|.++-.+.. .+. .+.. +|.++.. ..|.+|.+|+-|.||+-.+++.-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr-~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVR-ELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-HcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44556677777766552 222 2233 5666554 346689999999999999998643
No 382
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=23.28 E-value=1e+03 Score=26.41 Aligned_cols=125 Identities=22% Similarity=0.189 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHH-hCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCC
Q psy9904 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC-MQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD 430 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~-l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~ 430 (592)
...+..++..+..+...+..++ ..++.+ +...++++++.-..+++.|+.+.+. |++.++..+++.+.+.
T Consensus 54 ~~~L~~L~~~Vs~Ld~~~~~LV------~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 54 IRWLKALSSCVSLLDSSCKQLV------EAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPP 123 (563)
T ss_dssp HHHHHHHHHGGGGG-SCCHHHH------HHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHHHHHHhhhHHHHHH------HHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCC
Confidence 3455555555555655544443 333332 3356788888888899999876544 5666777777766543
Q ss_pred Ch--------------hHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcC--CCC--CchHHHHHHHHHHHhhhhC
Q psy9904 431 LI--------------SVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINR--PNT--PKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 431 ~~--------------~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~--~~~--~~~v~~na~~~lgrl~~~~ 492 (592)
.. .+.+....+|..|....+ .....|.+++.+ |+. +.....+-+..+=++..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP--------~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~ 195 (563)
T PF05327_consen 124 PSSIAEWPGCPPEKRREIYERVHDALQKILRLVP--------TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYC 195 (563)
T ss_dssp HHHHHH---------------HHHHHHHHHHH-G--------GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-
T ss_pred CccccccchhhhhhhhhhHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcch
Confidence 22 123345666666664433 222223333321 222 2333344455555666666
Q ss_pred CC
Q psy9904 493 PH 494 (592)
Q Consensus 493 ~~ 494 (592)
|+
T Consensus 196 P~ 197 (563)
T PF05327_consen 196 PE 197 (563)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 383
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=23.07 E-value=2.5e+02 Score=20.69 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=30.3
Q ss_pred cCchhhhhHHHHHHHHHHHHc----CCCCCchHHHHHHHHHHHhhhh
Q psy9904 449 LGEDMRRYVPMVINQLIIIIN----RPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 449 ~~~~~~p~~~~il~~L~~~l~----~~~~~~~v~~na~~~lgrl~~~ 491 (592)
.|+.=..|+|+.+...++.|+ +++.+..+++.|+.+-..+..+
T Consensus 15 IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLliS 61 (66)
T PF06786_consen 15 IGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLIS 61 (66)
T ss_pred hcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHHh
Confidence 343335688887777777665 4566789999999888777543
No 384
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=22.93 E-value=2.6e+02 Score=34.84 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=52.7
Q ss_pred hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHh
Q psy9904 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVK 448 (592)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~ 448 (592)
..+|+ +.++.+.-.+++..++.++..+..+...+-..+.. + +-..++..|+..+......-..+|+-.|-+++..
T Consensus 429 L~~~f--~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds-~--~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 429 LKDYF--PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS-Y--CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp HTTSH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H-H--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc-h--hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 44555 56788888888888888988887777666555422 1 1234555555554333333446788888888876
Q ss_pred cCchhhhhHH
Q psy9904 449 LGEDMRRYVP 458 (592)
Q Consensus 449 ~~~~~~p~~~ 458 (592)
.+..+.||..
T Consensus 504 ~~~~l~~fa~ 513 (1426)
T PF14631_consen 504 NPSELQPFAT 513 (1426)
T ss_dssp -HHHHHHTHH
T ss_pred cHHHHHHHHH
Confidence 6666666543
No 385
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=22.83 E-value=1.1e+03 Score=26.22 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCCh
Q psy9904 353 VALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI 432 (592)
Q Consensus 353 ~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~ 432 (592)
..++++...++++.--+.+-+....++++|....-+.++.||++|...|-.++...+ .-...+..+...+++ +++...
T Consensus 447 ~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~Fif~-~~d~~~ 524 (552)
T PF14222_consen 447 PQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARFIFR-FDDKYP 524 (552)
T ss_pred chhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHee-CcccCc
Confidence 345777777776653222222124688888888889999999999999999998775 333345555556665 555444
Q ss_pred h
Q psy9904 433 S 433 (592)
Q Consensus 433 ~ 433 (592)
.
T Consensus 525 ~ 525 (552)
T PF14222_consen 525 S 525 (552)
T ss_pred c
Confidence 3
No 386
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=22.75 E-value=2.2e+02 Score=23.56 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhc--cCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 393 VRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQN--LNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 393 vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~--l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
.|...+.+||.++...+.. ...+. .-+|.++++ +++.+|-+|+-|+|++-.++....
T Consensus 2 ~K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred cHHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 4667788888888665432 12221 236777766 466788999999999999886543
No 387
>KOG0929|consensus
Probab=22.12 E-value=1.6e+03 Score=28.11 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHH----HHHHHHHHHHHhhhhhh
Q psy9904 294 FPLLECLSSVATALQAGFLPYCE-PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFM----IVALDLLSGLAEGLDMH 368 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~f~py~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~----~~ald~l~~l~~~lg~~ 368 (592)
..+++.+-.+....|..|.+.+- .++. ++.+.+.... .+.. .....+++ ..|+..+..+....-+.
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~----~~fpIF~~~~----~~~~-~~~~~eW~~tT~~~Al~~~v~lf~~~~~~ 1262 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFR----ILFPIFDNVK----LDED-ESEKDEWLSTTCNHALQALVDLFTQFFKQ 1262 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHH----heeecccccC----cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999887543 3433 3322221100 0000 01112243 34455555555444444
Q ss_pred hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhh
Q psy9904 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHP 414 (592)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~ 414 (592)
....+ +.++.++..|...++..+-..+..++-.+....+..|..
T Consensus 1263 l~~lL--~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse 1306 (1514)
T KOG0929|consen 1263 LNNLL--PKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSE 1306 (1514)
T ss_pred HHHHH--HHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCH
Confidence 44555 677888999999888888889999998888877766543
No 388
>KOG3130|consensus
Probab=22.06 E-value=40 Score=34.55 Aligned_cols=15 Identities=40% Similarity=0.723 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCC
Q psy9904 54 GEEVEEEDDDLDDDS 68 (592)
Q Consensus 54 ~~~~~~~~~~~~d~~ 68 (592)
.++|+||||++|||+
T Consensus 272 ~edD~Dddd~dDdee 286 (514)
T KOG3130|consen 272 HEDDDDDDDDDDDEE 286 (514)
T ss_pred cccccccccccchhh
No 389
>KOG2475|consensus
Probab=21.97 E-value=48 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=17.1
Q ss_pred CCCcHHHHHHhcCCcccCCCCCCCCCC
Q psy9904 2 NLSAEIDIILLKGDVEEDEMIPDRDED 28 (592)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~~~ 28 (592)
|||++-.|.++.+. ++|+.+||-+++
T Consensus 115 Niy~~~qi~~l~d~-d~ee~i~~~e~~ 140 (587)
T KOG2475|consen 115 NIYEDNQIHLLDDG-DDEEQIPDLEDA 140 (587)
T ss_pred hcccCceEEEecCC-ChhhhcchHHHH
Confidence 78888888888653 445555654444
No 390
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=4.5e+02 Score=28.73 Aligned_cols=116 Identities=11% Similarity=0.194 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhh---hhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch-hhh-hhhh-hhHHHHH
Q psy9904 350 FMIVALDLLSGLAEGL---DMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF-SHV-HPCI-SDFMPIL 423 (592)
Q Consensus 350 ~~~~ald~l~~l~~~l---g~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~-~~~-~~~l-~~llp~l 423 (592)
+..+++.++-++.+.+ ...... .++.+++++.|.+ |++|....++.+-+-...+ +.+ ..|+ ..++..+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d----~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl 478 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLD----YPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccc----cchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHH
Confidence 3456667776665543 333322 4688999999987 4555444443332222111 111 1223 3577777
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHhcCc--hhhhhHHHHHHHHHHHHcCC
Q psy9904 424 GQNLNPDLISVCNNATWAIGEISVKLGE--DMRRYVPMVINQLIIIINRP 471 (592)
Q Consensus 424 ~~~l~~~~~~v~~~A~~~Lg~ia~~~~~--~~~p~~~~il~~L~~~l~~~ 471 (592)
.+.+...+...+.|..|++-.+.-++.. .|++...-=+..++...++|
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp 528 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP 528 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc
Confidence 7777766778999999999977655542 34443333334444444433
No 391
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=21.77 E-value=7e+02 Score=23.69 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=20.4
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHHhhC
Q psy9904 564 TQVGDENWQRFADQFPDQLRDRLSAMYG 591 (592)
Q Consensus 564 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 591 (592)
+..++.+.+.+.+.|++.-|.-++.+|.
T Consensus 186 d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 186 DVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred HhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3455556777888888888888877763
No 392
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=20.70 E-value=1.4e+03 Score=26.79 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc
Q psy9904 78 CSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGC 128 (592)
Q Consensus 78 ~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~ 128 (592)
.-+.|++++|..--+.=||.++|-+...+++.|-..-+..+.++-.|....
T Consensus 104 q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 104 QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 346677777764333458999999988888877777777777777766543
No 393
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.45 E-value=4.5e+02 Score=22.30 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 101 ILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL---SDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 101 ~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L---~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
.+.+..++.+| -..-..+..|+..+-+. ..+..|+.++.+.| +..+|++..-|+..|.-+..+..+
T Consensus 7 ~v~eAT~~d~~---gp~~~~l~eIa~~t~~~--~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~ 75 (125)
T PF01417_consen 7 KVREATSNDPW---GPPGKLLAEIAQLTYNS--KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE 75 (125)
T ss_dssp HHHHHTSSSSS---S--HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H
T ss_pred HHHHHcCCCCC---CcCHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH
No 394
>KOG3723|consensus
Probab=20.42 E-value=4.5e+02 Score=28.76 Aligned_cols=81 Identities=23% Similarity=0.203 Sum_probs=51.3
Q ss_pred HHHHHhhhc--hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh-HHHHHHHH
Q psy9904 83 LDVLANVFR--EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK-ALVRAITC 159 (592)
Q Consensus 83 L~~la~~~~--~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~-~~VR~~a~ 159 (592)
|.+++..+. ++.+.+-+|.+..++.+.++..|.+--.-..-|...-.+ .+.+.+|.|+..+.|.+ ..+|-..|
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~e----vL~~ciP~L~g~l~ds~~~~i~~~Il 258 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLE----VLQKCIPFLIGHLKDSTHNDIILNIL 258 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHhccccchhHHHHHH
Confidence 444444433 345555667677777888888777655444445544443 57788999999988874 45666666
Q ss_pred HHHHHHHH
Q psy9904 160 WTLSRYSH 167 (592)
Q Consensus 160 ~aL~~l~~ 167 (592)
.-|+.+..
T Consensus 259 k~ia~~~p 266 (851)
T KOG3723|consen 259 KEIAVYEP 266 (851)
T ss_pred HHHHhcCc
Confidence 66666543
Done!