Query psy9904
Match_columns 592
No_of_seqs 392 out of 2039
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 22:38:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 6.1E-68 2.1E-72 612.8 56.5 506 68-592 330-852 (852)
2 2bpt_A Importin beta-1 subunit 100.0 2.5E-34 8.4E-39 332.0 43.4 431 72-542 344-831 (861)
3 1qgr_A Protein (importin beta 100.0 1.4E-33 4.8E-38 326.3 42.3 455 72-564 341-871 (876)
4 4fdd_A Transportin-1; heat rep 100.0 2.8E-30 9.7E-35 298.0 46.8 491 72-590 228-819 (852)
5 1wa5_C Importin alpha RE-expor 100.0 6.8E-29 2.3E-33 289.7 41.0 470 71-591 373-958 (960)
6 2bpt_A Importin beta-1 subunit 100.0 3.1E-27 1.1E-31 272.6 43.8 493 72-576 237-823 (861)
7 1qgr_A Protein (importin beta 100.0 3.2E-27 1.1E-31 273.1 40.5 464 74-568 274-831 (876)
8 1u6g_C TIP120 protein, CAND1; 99.9 2.3E-25 8E-30 266.7 38.5 472 71-568 60-602 (1230)
9 1u6g_C TIP120 protein, CAND1; 99.9 6.3E-25 2.1E-29 263.0 40.8 484 74-578 101-697 (1230)
10 1b3u_A Protein (protein phosph 99.9 3.4E-25 1.2E-29 244.2 31.1 384 73-494 140-552 (588)
11 1b3u_A Protein (protein phosph 99.9 3.9E-25 1.3E-29 243.8 31.2 377 72-489 177-586 (588)
12 2x1g_F Cadmus; transport prote 99.9 7.7E-25 2.6E-29 256.1 29.6 380 74-526 436-860 (971)
13 2x19_B Importin-13; nuclear tr 99.9 2.5E-23 8.6E-28 243.2 35.2 390 74-503 422-907 (963)
14 4hat_C Exportin-1; heat repeat 99.9 6.9E-23 2.4E-27 236.9 35.0 462 81-567 435-1009(1023)
15 3m1i_C Exportin-1; heat repeat 99.9 4E-22 1.4E-26 234.5 38.0 397 70-489 424-928 (1049)
16 3gjx_A Exportin-1; transport, 99.9 7.3E-19 2.5E-23 202.4 40.3 394 73-489 453-952 (1073)
17 3ibv_A Exportin-T; karyopherin 99.9 3E-20 1E-24 214.8 28.1 386 66-492 407-872 (980)
18 1ibr_B P95, importin beta-1 su 99.9 7.3E-20 2.5E-24 195.3 28.7 327 77-469 107-461 (462)
19 1ibr_B P95, importin beta-1 su 99.8 5.5E-18 1.9E-22 180.7 27.8 341 73-494 51-441 (462)
20 2x1g_F Cadmus; transport prote 99.8 3.2E-17 1.1E-21 191.7 29.0 384 71-501 476-917 (971)
21 1wa5_C Importin alpha RE-expor 99.7 3.8E-15 1.3E-19 173.6 38.8 342 111-500 375-759 (960)
22 1wa5_B Importin alpha subunit; 99.7 9.9E-17 3.4E-21 174.8 23.8 346 72-492 100-459 (530)
23 4b8j_A Importin subunit alpha- 99.7 4.8E-16 1.7E-20 169.2 26.8 392 99-565 76-497 (528)
24 4b8j_A Importin subunit alpha- 99.7 3E-16 1E-20 170.9 24.4 346 71-492 86-445 (528)
25 2jdq_A Importin alpha-1 subuni 99.7 9.8E-16 3.4E-20 162.8 27.2 345 73-492 34-392 (450)
26 2vgl_B AP-2 complex subunit be 99.7 3.8E-15 1.3E-19 164.2 30.0 420 73-562 100-530 (591)
27 2jdq_A Importin alpha-1 subuni 99.7 3.7E-15 1.3E-19 158.3 28.9 354 99-527 22-393 (450)
28 1wa5_B Importin alpha subunit; 99.7 4.9E-15 1.7E-19 161.3 30.4 394 97-565 87-511 (530)
29 2x19_B Importin-13; nuclear tr 99.7 2.5E-14 8.4E-19 167.1 38.3 371 113-525 423-847 (963)
30 1w63_A Adapter-related protein 99.7 4.9E-14 1.7E-18 156.0 30.9 431 74-580 122-591 (618)
31 3ul1_B Importin subunit alpha- 99.6 1.6E-12 5.4E-17 140.7 36.2 393 100-564 60-478 (510)
32 2qk2_A LP04448P; mini spindles 99.6 1.7E-14 5.8E-19 140.3 18.6 199 71-331 27-232 (242)
33 2qk1_A Protein STU2; STU2P, XM 99.6 1.9E-14 6.6E-19 140.2 18.7 202 102-460 21-234 (249)
34 3tpo_A Importin subunit alpha- 99.6 2.7E-12 9.2E-17 139.5 37.7 394 99-564 78-497 (529)
35 2vgl_B AP-2 complex subunit be 99.6 3.2E-12 1.1E-16 140.8 38.3 442 72-591 62-528 (591)
36 2qk1_A Protein STU2; STU2P, XM 99.6 2.1E-14 7.3E-19 139.9 17.9 193 70-318 27-234 (249)
37 2qk2_A LP04448P; mini spindles 99.6 2.1E-14 7.3E-19 139.6 17.5 205 93-460 11-219 (242)
38 3now_A UNC-45 protein, SD10334 99.6 3.3E-13 1.1E-17 150.5 27.3 393 74-525 345-783 (810)
39 1w63_A Adapter-related protein 99.6 8.5E-12 2.9E-16 138.0 37.4 379 72-524 83-490 (618)
40 3ul1_B Importin subunit alpha- 99.5 1.3E-12 4.4E-17 141.3 22.7 344 73-491 71-431 (510)
41 3tpo_A Importin subunit alpha- 99.5 5.8E-12 2E-16 136.9 24.7 343 73-490 90-449 (529)
42 3now_A UNC-45 protein, SD10334 99.4 7.1E-11 2.4E-15 131.8 29.5 346 73-490 393-782 (810)
43 2z6g_A B-catenin; FULL-length, 99.4 8.7E-11 3E-15 133.4 30.3 371 72-524 128-518 (780)
44 2z6g_A B-catenin; FULL-length, 99.4 8.6E-11 3E-15 133.4 29.5 405 72-524 163-622 (780)
45 2vgl_A Adaptor protein complex 99.4 2E-10 6.7E-15 126.8 30.5 451 73-580 125-604 (621)
46 2z6h_A Catenin beta-1, beta-ca 99.4 4.2E-10 1.5E-14 125.2 32.2 406 73-524 28-486 (644)
47 1jdh_A Beta-catenin; beta-cate 99.4 3.1E-10 1E-14 122.9 29.5 367 73-487 31-423 (529)
48 2z6h_A Catenin beta-1, beta-ca 99.3 1.1E-10 3.8E-15 130.0 24.9 350 98-524 15-382 (644)
49 3m1i_C Exportin-1; heat repeat 99.3 1E-09 3.5E-14 128.9 33.9 422 73-527 114-621 (1049)
50 1jdh_A Beta-catenin; beta-cate 99.3 7E-10 2.4E-14 120.1 29.6 351 97-524 17-385 (529)
51 3ibv_A Exportin-T; karyopherin 99.3 5.2E-10 1.8E-14 129.3 29.9 379 71-472 455-900 (980)
52 1oyz_A Hypothetical protein YI 99.3 5.6E-11 1.9E-15 117.8 18.2 253 99-487 25-279 (280)
53 4hxt_A De novo protein OR329; 99.3 9.4E-10 3.2E-14 106.6 24.3 245 99-456 4-250 (252)
54 2vgl_A Adaptor protein complex 99.2 3E-09 1E-13 117.3 29.1 370 71-528 86-474 (621)
55 1oyz_A Hypothetical protein YI 99.2 7.9E-10 2.7E-14 109.5 21.8 253 138-519 23-277 (280)
56 3a6p_A Exportin-5; exportin-5, 99.2 8.9E-10 3E-14 130.6 22.8 206 70-284 434-681 (1204)
57 3l6x_A Catenin delta-1; cateni 99.2 9.1E-09 3.1E-13 111.1 28.4 380 78-524 27-476 (584)
58 4db8_A Armadillo-repeat protei 99.2 9.7E-10 3.3E-14 106.8 19.1 112 377-490 138-251 (252)
59 1xm9_A Plakophilin 1; armadill 99.2 2.1E-08 7.3E-13 106.6 30.8 349 99-490 4-449 (457)
60 4hat_C Exportin-1; heat repeat 99.2 4.4E-09 1.5E-13 121.8 26.3 320 71-409 465-881 (1023)
61 3nmz_A APC variant protein; pr 99.2 3.3E-09 1.1E-13 111.8 22.7 345 79-495 49-455 (458)
62 4hxt_A De novo protein OR329; 99.1 5.7E-09 1.9E-13 101.0 22.5 145 348-495 100-246 (252)
63 3l6x_A Catenin delta-1; cateni 99.1 7.9E-08 2.7E-12 103.7 30.5 352 74-490 63-476 (584)
64 3nmz_A APC variant protein; pr 99.0 8.7E-08 3E-12 100.9 25.5 180 347-529 256-455 (458)
65 3ltm_A Alpha-REP4; protein eng 99.0 1.3E-08 4.5E-13 96.0 16.6 91 96-225 18-108 (211)
66 3gjx_A Exportin-1; transport, 99.0 5.2E-09 1.8E-13 120.8 16.0 334 138-495 477-864 (1073)
67 2iw3_A Elongation factor 3A; a 99.0 2.7E-07 9.4E-12 104.5 29.2 308 76-472 31-358 (986)
68 2iw3_A Elongation factor 3A; a 98.9 2.1E-08 7.1E-13 113.6 18.6 157 73-229 109-282 (986)
69 4ady_A RPN2, 26S proteasome re 98.9 1.9E-07 6.4E-12 104.6 25.9 305 73-489 409-718 (963)
70 4ady_A RPN2, 26S proteasome re 98.9 8.4E-08 2.9E-12 107.4 21.1 303 76-504 375-694 (963)
71 3ltj_A Alpharep-4; protein eng 98.9 5.1E-08 1.7E-12 91.2 15.8 186 94-405 11-197 (201)
72 3ltm_A Alpha-REP4; protein eng 98.8 6.6E-08 2.3E-12 91.1 16.0 108 72-225 32-139 (211)
73 1xm9_A Plakophilin 1; armadill 98.8 6.2E-07 2.1E-11 95.2 23.9 318 140-494 4-410 (457)
74 3nmw_A APC variant protein; AR 98.8 1.1E-06 3.7E-11 89.7 23.7 118 376-495 213-339 (354)
75 3ltj_A Alpharep-4; protein eng 98.8 1.7E-07 5.8E-12 87.6 16.4 108 72-225 27-134 (201)
76 4db8_A Armadillo-repeat protei 98.8 3.7E-07 1.2E-11 88.4 19.0 179 347-529 25-214 (252)
77 1xqr_A HSPBP1 protein; armadil 98.7 5.2E-07 1.8E-11 89.6 19.6 210 350-564 56-287 (296)
78 4db6_A Armadillo repeat protei 98.7 2E-07 6.8E-12 87.6 15.9 144 347-493 25-170 (210)
79 3a6p_A Exportin-5; exportin-5, 98.7 5E-06 1.7E-10 98.5 28.4 441 73-545 110-681 (1204)
80 4db6_A Armadillo repeat protei 98.7 2.5E-07 8.5E-12 86.9 13.9 141 347-490 67-209 (210)
81 2db0_A 253AA long hypothetical 98.6 1.3E-05 4.6E-10 70.9 22.2 193 349-560 47-242 (253)
82 1te4_A Conserved protein MTH18 98.5 1.6E-08 5.4E-13 87.8 0.6 105 73-224 26-130 (131)
83 1xqr_A HSPBP1 protein; armadil 98.5 2E-06 7E-11 85.3 14.9 145 346-493 94-241 (296)
84 3opb_A SWI5-dependent HO expre 98.5 1.7E-05 5.7E-10 87.3 23.3 373 74-493 309-731 (778)
85 4ffb_C Protein STU2; tubulin f 98.4 6.9E-07 2.3E-11 88.2 10.4 196 102-412 14-218 (278)
86 2db0_A 253AA long hypothetical 98.3 6.5E-05 2.2E-09 66.6 17.4 156 376-541 31-190 (253)
87 3oc3_A Helicase MOT1, MOT1; re 98.2 3.3E-06 1.1E-10 87.4 9.3 138 73-225 242-402 (800)
88 3opb_A SWI5-dependent HO expre 98.2 0.00029 9.8E-09 77.6 24.7 336 76-479 351-767 (778)
89 1te4_A Conserved protein MTH18 98.2 1.5E-06 5.1E-11 75.2 5.0 77 72-165 55-131 (131)
90 2of3_A ZYG-9; multifunctional 98.1 0.00018 6E-09 69.4 19.1 194 101-418 50-248 (266)
91 3nmw_A APC variant protein; AR 98.1 6.7E-05 2.3E-09 76.4 16.1 181 347-530 140-340 (354)
92 4ffb_C Protein STU2; tubulin f 98.1 3.4E-05 1.2E-09 75.9 13.2 151 69-225 19-210 (278)
93 1vsy_5 Proteasome activator BL 98.0 0.0012 3.9E-08 76.0 25.7 210 369-586 753-987 (997)
94 2of3_A ZYG-9; multifunctional 97.8 0.0055 1.9E-07 58.9 23.6 199 384-590 53-261 (266)
95 3tjz_B Coatomer subunit gamma; 97.5 0.00079 2.7E-08 67.9 13.4 86 73-166 82-167 (355)
96 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00098 3.3E-08 69.3 13.5 127 69-225 184-326 (800)
97 3l9t_A Putative uncharacterize 97.3 0.0017 5.8E-08 60.6 11.9 120 95-227 69-207 (240)
98 3tt9_A Plakophilin-2; cell adh 97.3 0.0088 3E-07 56.6 16.9 111 378-491 9-125 (233)
99 3tjz_B Coatomer subunit gamma; 97.2 0.028 9.5E-07 56.6 19.8 304 78-489 47-352 (355)
100 4gmo_A Putative uncharacterize 97.1 0.023 7.8E-07 63.1 19.9 72 97-169 35-107 (684)
101 3b2a_A TON_1937, putative unch 96.9 0.17 5.7E-06 47.0 20.0 146 377-525 33-180 (265)
102 3l9t_A Putative uncharacterize 96.7 0.0035 1.2E-07 58.5 7.8 76 74-161 86-162 (240)
103 3b2a_A TON_1937, putative unch 96.7 0.034 1.2E-06 51.6 14.1 109 69-189 15-124 (265)
104 3grl_A General vesicular trans 96.6 1.1 3.8E-05 48.1 27.9 314 75-447 38-394 (651)
105 3grl_A General vesicular trans 96.3 0.11 3.9E-06 55.7 17.2 201 273-493 20-244 (651)
106 3tt9_A Plakophilin-2; cell adh 96.3 0.04 1.4E-06 52.0 12.2 141 349-491 25-181 (233)
107 4atg_A TAF6; transcription, TF 95.8 0.14 4.8E-06 46.5 12.9 101 390-490 59-162 (196)
108 4gmo_A Putative uncharacterize 95.7 0.027 9.1E-07 62.5 9.6 150 377-528 35-218 (684)
109 1lrv_A LRV, leucine-rich repea 95.5 0.0034 1.2E-07 59.9 1.3 21 143-163 199-219 (244)
110 1w9c_A CRM1 protein, exportin 95.4 1 3.5E-05 44.1 18.4 203 354-564 94-318 (321)
111 4atg_A TAF6; transcription, TF 93.9 0.62 2.1E-05 42.2 11.8 97 348-446 60-161 (196)
112 1w9c_A CRM1 protein, exportin 93.8 2.8 9.5E-05 41.1 17.0 128 272-409 67-199 (321)
113 1vsy_5 Proteasome activator BL 93.8 0.057 2E-06 62.0 5.9 96 73-169 858-968 (997)
114 1lsh_A Lipovitellin (LV-1N, LV 92.6 1.5 5.1E-05 51.0 15.4 87 71-167 407-507 (1056)
115 1lrv_A LRV, leucine-rich repea 92.5 0.056 1.9E-06 51.4 2.7 107 71-223 134-242 (244)
116 1vsy_4 Proteasome activator BL 92.1 18 0.0006 40.4 25.7 96 94-189 336-435 (799)
117 3u0r_A Apoptosis inhibitor 5; 91.7 9.2 0.00031 39.4 18.0 49 75-126 81-129 (507)
118 1lsh_A Lipovitellin (LV-1N, LV 89.6 2.3 7.9E-05 49.4 13.0 171 377-565 391-577 (1056)
119 3ldz_A STAM-1, signal transduc 89.3 2.5 8.5E-05 36.1 9.9 76 96-171 41-118 (140)
120 1vsy_4 Proteasome activator BL 88.9 33 0.0011 38.2 29.0 98 73-170 353-458 (799)
121 1x5b_A Signal transducing adap 87.8 3.7 0.00013 36.0 10.2 76 96-171 51-129 (163)
122 2b6c_A Hypothetical protein EF 87.1 2.5 8.5E-05 39.2 9.2 88 70-167 101-188 (220)
123 3g2s_A C-terminal fragment of 86.7 6.1 0.00021 34.0 10.7 75 377-451 48-130 (149)
124 3ldz_A STAM-1, signal transduc 86.6 4.2 0.00014 34.6 9.6 75 377-451 42-118 (140)
125 1mhq_A ADP-ribosylation factor 86.3 7.6 0.00026 33.4 11.2 75 377-451 38-120 (148)
126 1x5b_A Signal transducing adap 85.4 4.5 0.00016 35.4 9.4 75 377-451 52-129 (163)
127 1juq_A ADP-ribosylation factor 84.9 7.2 0.00025 34.4 10.6 86 377-464 50-143 (171)
128 3u0r_A Apoptosis inhibitor 5; 84.3 41 0.0014 34.7 22.5 88 73-167 42-129 (507)
129 1t06_A Hypothetical protein; s 82.6 5.1 0.00017 37.5 9.1 70 96-168 107-181 (235)
130 3zyq_A Hepatocyte growth facto 79.7 19 0.00066 33.3 11.9 76 96-171 44-122 (226)
131 1elk_A Target of MYB1; superhe 79.4 14 0.00048 32.0 10.2 76 96-171 52-134 (157)
132 3g2s_A C-terminal fragment of 79.0 16 0.00055 31.3 10.3 76 96-171 47-130 (149)
133 1vdy_A Hypothetical protein (R 79.0 12 0.00042 31.7 9.2 84 82-166 31-129 (140)
134 3jxy_A Alkylpurine DNA glycosy 78.8 5.7 0.00019 37.0 8.0 64 98-167 132-195 (232)
135 2b6c_A Hypothetical protein EF 76.9 9.2 0.00031 35.3 8.8 75 377-457 124-198 (220)
136 1mhq_A ADP-ribosylation factor 76.7 14 0.00048 31.7 9.2 74 97-170 38-119 (148)
137 3o2t_A Symplekin; heat repeat, 76.1 36 0.0012 34.2 13.3 109 376-490 62-183 (386)
138 3gs3_A Symplekin, LD45768P; he 75.3 37 0.0012 32.0 12.6 72 92-167 48-119 (257)
139 1dvp_A HRS, hepatocyte growth 75.2 21 0.00073 32.7 10.8 90 96-185 41-133 (220)
140 1juq_A ADP-ribosylation factor 74.8 23 0.00078 31.2 10.3 75 96-170 49-131 (171)
141 3o2t_A Symplekin; heat repeat, 73.0 35 0.0012 34.2 12.4 72 92-167 58-129 (386)
142 2fv2_A RCD1 required for cell 72.0 19 0.00067 33.8 9.4 68 379-446 103-173 (268)
143 3gs3_A Symplekin, LD45768P; he 71.1 70 0.0024 30.1 14.9 109 376-490 52-173 (257)
144 1elk_A Target of MYB1; superhe 71.1 35 0.0012 29.4 10.5 74 377-450 53-133 (157)
145 2npp_B PP2A, B subunit, serine 70.5 1E+02 0.0034 31.6 22.4 89 352-446 302-398 (449)
146 3fga_B Serine/threonine-protei 64.2 1.2E+02 0.0042 30.4 28.5 94 352-447 269-366 (403)
147 1dvp_A HRS, hepatocyte growth 62.7 62 0.0021 29.5 11.1 88 377-464 42-133 (220)
148 3zyq_A Hepatocyte growth facto 60.2 40 0.0014 31.0 9.3 89 377-465 45-137 (226)
149 1vdy_A Hypothetical protein (R 55.7 32 0.0011 29.1 7.0 46 376-421 48-93 (140)
150 3jxy_A Alkylpurine DNA glycosy 55.1 21 0.00072 33.1 6.4 75 378-458 132-206 (232)
151 1upk_A MO25 protein; transfera 49.3 1.6E+02 0.0053 28.9 11.6 71 376-446 208-282 (341)
152 3rru_A TOM1L1 protein; structu 47.9 1.3E+02 0.0045 25.6 11.0 88 377-464 53-148 (152)
153 1t06_A Hypothetical protein; s 46.4 59 0.002 30.1 8.0 72 377-451 108-184 (235)
154 3rru_A TOM1L1 protein; structu 39.4 79 0.0027 27.0 7.1 75 97-171 53-134 (152)
155 3hou_D DNA-directed RNA polyme 38.8 61 0.0021 29.3 6.3 36 76-111 119-157 (221)
156 1ho8_A Vacuolar ATP synthase s 37.8 37 0.0013 35.0 5.4 59 431-492 418-478 (480)
157 1sz9_A PCF11 protein; RNA poly 27.4 2.7E+02 0.0093 23.3 11.8 90 294-405 24-113 (144)
158 1ho8_A Vacuolar ATP synthase s 27.0 1.1E+02 0.0038 31.5 6.9 58 109-167 417-476 (480)
159 4f52_E Glomulin; cullin-ring E 26.5 2.6E+02 0.0089 29.8 9.9 78 93-171 313-399 (596)
160 1sz9_A PCF11 protein; RNA poly 26.3 2.9E+02 0.0098 23.1 9.8 85 78-163 25-110 (144)
161 3eg5_B Protein diaphanous homo 25.5 5E+02 0.017 25.7 14.8 111 296-409 84-194 (383)
162 2ysk_A Hypothetical protein TT 24.5 85 0.0029 26.6 4.7 52 533-584 85-140 (145)
163 2fv2_A RCD1 required for cell 24.4 4.4E+02 0.015 24.6 11.4 92 75-166 71-173 (268)
164 1om2_A Protein (mitochondrial 22.7 2E+02 0.0068 22.3 6.0 68 503-580 7-78 (95)
165 2bnx_A Diaphanous protein homo 22.4 5.7E+02 0.02 25.2 11.4 61 348-409 72-132 (386)
166 1upk_A MO25 protein; transfera 21.7 5.6E+02 0.019 24.9 15.4 101 379-481 166-274 (341)
167 2f31_A Diaphanous protein homo 21.6 4.5E+02 0.015 23.8 10.8 60 348-408 68-127 (233)
168 3fga_B Serine/threonine-protei 21.4 6.2E+02 0.021 25.3 24.5 60 70-129 95-161 (403)
169 3d9j_A RNA-binding protein 16; 21.0 3.6E+02 0.012 22.5 9.9 36 376-411 41-76 (145)
170 3ut4_A CTHE_2751, putative unc 20.3 3.7E+02 0.013 22.3 8.2 62 91-166 25-86 (134)
171 2f31_A Diaphanous protein homo 20.2 2E+02 0.0067 26.3 6.7 56 112-168 69-126 (233)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=6.1e-68 Score=612.77 Aligned_cols=506 Identities=74% Similarity=1.275 Sum_probs=460.3
Q ss_pred CccccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904 68 SSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147 (592)
Q Consensus 68 ~~~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L 147 (592)
|....|++|++|+.+|+.++..+|+.+++.++|++.+.++|++|++|++|+.+||.+++++++.+.+|++.++|.++..|
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 34478999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhh
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~ 227 (592)
+|+++.||.+|+|+||++++++.+.....|+.++++.|++.+ .|.+..+|..++++++.+++
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L------------------~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI------------------LDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH------------------TCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876556677777776666544 55577899999999999987
Q ss_pred hhccCCcccchHHHHHh---------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHH
Q psy9904 228 WVVSQPHDSYLKPLMTE---------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLE 298 (592)
Q Consensus 228 ~~~~~~~~~y~~~~~~~---------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e 298 (592)
..+.. ..||+.+++.. .++...++++++++++.+|+.+.+++|++.+||.+++.|+.+.++++++..+++
T Consensus 472 ~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~ 550 (852)
T 4fdd_A 472 EACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLE 550 (852)
T ss_dssp HHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHH
T ss_pred HhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 77644 67787776653 234557899999999999999988899999999999999888887777788999
Q ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCch
Q psy9904 299 CLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNI 378 (592)
Q Consensus 299 ~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l 378 (592)
|++.++.++|..|.||+++++++++..+..++.+......+++..+.+|++++..++++++.+++++|.+|.+|+..+.+
T Consensus 551 ~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~ 630 (852)
T 4fdd_A 551 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 630 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcH
Confidence 99999999999999999999999999999887655444445544456688899999999999999999999999855789
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~ 458 (592)
++.++.++++++++||+.++.++++++++++..+.+|++.++|.+.+.++++.+++|++|+|++|+++.++|.++.||++
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~ 710 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 710 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--------HhhhcccCCCchHhHHHHHHHHHHHhhCchhh
Q psy9904 459 MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV 530 (592)
Q Consensus 459 ~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--------~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~ 530 (592)
.+++.|++++++++.++.+++|++.|||||+..+|+.++| ||..|+.+.|++||.+||+|||.++..||+.+
T Consensus 711 ~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~ 790 (852)
T 4fdd_A 711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 790 (852)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH
Confidence 9999999999988878899999999999999999876654 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904 531 VQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592 (592)
Q Consensus 531 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 592 (592)
.++|..||++|++|..++++++++|.++|++||+++|+++|++++++|||+++++|+++|||
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 852 (852)
T 4fdd_A 791 IQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 852 (852)
T ss_dssp GGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999998889999999999999999999997
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.5e-34 Score=332.04 Aligned_cols=431 Identities=16% Similarity=0.229 Sum_probs=345.0
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCC
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~ 150 (592)
+|++|++|+.+|+.++..+|+.+++.+++++.+.+++++|.+|++|+.+||.+++++. +.+.+|++.++|.+++.++|+
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~ 423 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ 423 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS
T ss_pred cCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999999999999999999999999999986 778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~-~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~ 229 (592)
++.||.+++|+||++++++.+.. ..++++++++.+++. ++|. ..+|..+|+++..+++..
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~------------------l~~~-~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIG------------------LQDH-PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH------------------HTSC-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH------------------hccC-hHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987532 245666666555443 4554 678999999999998876
Q ss_pred c---cCCcccchHHHHHhh----------hhH-HHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhc--------c
Q psy9904 230 V---SQPHDSYLKPLMTEH----------KNL-LILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNIL--------K 287 (592)
Q Consensus 230 ~---~~~~~~y~~~~~~~~----------~~l-~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~--------~ 287 (592)
+ .....||+.+++... .++ ..++.+++.++...|..+. +|++.++|.+++.|... .
T Consensus 485 ~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH--HHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 5 245568877666421 223 3688999999999998765 89999999999887642 1
Q ss_pred cC----Cccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCh-hHHHHHHHHHHHH
Q psy9904 288 DE----DKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDK-DFMIVALDLLSGL 361 (592)
Q Consensus 288 d~----~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~ald~l~~l 361 (592)
++ ...+ ..++++++.++..+|..+.||++.+++.++..+... +. ..+..++.+++.+
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----------------~~~~v~~~~~~~l~~l 625 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-----------------DSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-----------------TGGGTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-----------------CCCcHHHHHHHHHHHH
Confidence 11 1112 468899999999999999999988766554443210 12 5677889999999
Q ss_pred HhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCC--hhHHHHHH
Q psy9904 362 AEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDL--ISVCNNAT 439 (592)
Q Consensus 362 ~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~--~~v~~~A~ 439 (592)
+..+|.+|.||+ +.+++.+..+++++++.+|..++.+++++++.++..+.||++.++|.+++.+++++ ..+|..++
T Consensus 626 ~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 626 AASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVL 703 (861)
T ss_dssp HHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHH
Confidence 999999999999 78999999999988999999999999999999999999999999999999997654 78999999
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCC---------CchHHHHHHHHHHHhhhhCC---CchHhHhhh----c
Q psy9904 440 WAIGEISVKLGEDMRRYVPMVINQLIIIINRPNT---------PKTLLENTAITIGRLGYVCP---HDVAPLCSS----L 503 (592)
Q Consensus 440 ~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~---------~~~v~~na~~~lgrl~~~~~---~~~~p~~~~----L 503 (592)
+++|.++...|+.|.||++.++|.+.+.++.... ...++.+++.+++.++...+ +.+.||+.. |
T Consensus 704 ~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l 783 (861)
T 2bpt_A 704 SVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFI 783 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875321 13578899999999887655 345554432 2
Q ss_pred cc-CCC-----ch-HhHHHHHHHHHHHhhC-chhhhhhHH-HHHHHhh
Q psy9904 504 RN-IRD-----NE-EKDSAFRGMCAMITVN-PGGVVQEFI-FFCDAVA 542 (592)
Q Consensus 504 ~~-~~d-----~~-Ek~~a~~~l~~li~~~-p~~~~~~~~-~~~~~i~ 542 (592)
.. ..| +. -|..|+.+++.++..- +..+.+++. .++..+.
T Consensus 784 ~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll 831 (861)
T 2bpt_A 784 AQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYI 831 (861)
T ss_dssp HHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHH
T ss_pred HHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHH
Confidence 11 123 22 2788999999999754 344445444 4444433
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.4e-33 Score=326.30 Aligned_cols=455 Identities=20% Similarity=0.269 Sum_probs=352.6
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhHhhHHHHHHHhccCC
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l~~lvp~l~~~L~D~ 150 (592)
+|++|++|+.+|+.++..+|+.+++.++|++.+.+++++|++|++|+.+||.+++++. +.+.+|++.++|.++..|+|+
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 5999999999999999999999999999999999999999999999999999999998 667899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~-~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~ 229 (592)
++.||.+|+|+|+++++++.+.. ..++++.+++.++..+ .|. ..++..++++++.+++..
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l------------------~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL------------------SAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT------------------TSC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH------------------cCC-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999986532 3567777776665544 443 667888999999988776
Q ss_pred c-------------cCCcccchHHHHHhh-----------hhHH-HHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHh
Q psy9904 230 V-------------SQPHDSYLKPLMTEH-----------KNLL-ILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284 (592)
Q Consensus 230 ~-------------~~~~~~y~~~~~~~~-----------~~l~-~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~ 284 (592)
+ .....||+.+++... ++++ .++++++.++..+|.+.. +|++.++|.+++.|.
T Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~ 559 (876)
T 1qgr_A 482 YEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQ 559 (876)
T ss_dssp HHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHH
T ss_pred hhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH--HHHHHHHHHHHHHHH
Confidence 5 134678877766421 2343 689999999999998765 899999999999886
Q ss_pred hc--------ccCCcc----c-hHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhH
Q psy9904 285 IL--------KDEDKD----L-FPLLECLSSVATALQ-AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDF 350 (592)
Q Consensus 285 ~~--------~d~~~~----~-~~~~e~l~~ia~~~g-~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 350 (592)
.. .++++. + ..++.|++.++..+| ..+.||++.+++.+++.+...- .....
T Consensus 560 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~---------------~~~~v 624 (876)
T 1qgr_A 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA---------------GSGGV 624 (876)
T ss_dssp HHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--------------------CCHH
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc---------------CCCCc
Confidence 53 222221 1 357889999999999 9999999988776665544320 01245
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC
Q psy9904 351 MIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP 429 (592)
Q Consensus 351 ~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~ 429 (592)
+..++.+++.++..+|..|.||+ +.+++.+..++++. ++.+|..++.+++++++.++..+.||++.+++.+++.++.
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 67899999999999999999999 68999999999887 8999999999999999999999999999999999999976
Q ss_pred --CChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCC--C-------chHHHHHHHHHHHhhhhCC-----
Q psy9904 430 --DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNT--P-------KTLLENTAITIGRLGYVCP----- 493 (592)
Q Consensus 430 --~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~--~-------~~v~~na~~~lgrl~~~~~----- 493 (592)
.+.+++.++++++|.++..+|.+|.+|++.+++.+...++.+.. + ..+++.+..+++.+....+
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 35789999999999999999999999999999999998864321 1 2678888888876654321
Q ss_pred -----CchHhHhhh----cccC-CCc----hHhHHHHHHHHHHHhhCch-hhhhhH-HHHHHHhhc-c-CCCchhHHHHH
Q psy9904 494 -----HDVAPLCSS----LRNI-RDN----EEKDSAFRGMCAMITVNPG-GVVQEF-IFFCDAVAS-W-STPKEDLKEMF 555 (592)
Q Consensus 494 -----~~~~p~~~~----L~~~-~d~----~Ek~~a~~~l~~li~~~p~-~~~~~~-~~~~~~i~~-~-~~~~~~~~~~~ 555 (592)
+.+.||+.. +... .+. .-|..|+.+|+.++...+. .+.+.+ ..++..+.. . .+++++++.+.
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 234553332 2111 222 3378899999999976444 443331 122332222 1 24566777776
Q ss_pred HHHHHHHHh
Q psy9904 556 HKILHGFRT 564 (592)
Q Consensus 556 ~~ll~~~~~ 564 (592)
...+..+++
T Consensus 863 ~~a~~~~~~ 871 (876)
T 1qgr_A 863 RWATKELRK 871 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.8e-30 Score=298.02 Aligned_cols=491 Identities=23% Similarity=0.311 Sum_probs=365.7
Q ss_pred cchHHHHHHHHHHHHHhhhchh---hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhh--chhchhhhHhhHHHHHHHh
Q psy9904 72 DWNLRKCSAAALDVLANVFREE---LLPVLLPILKETLFHHDWEIKESGILALGAIAEG--CMNGMVPHLNELVPFLITC 146 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~---vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg--~~~~i~~~l~~lvp~l~~~ 146 (592)
++.+|+.|..+|..+++..++. .++.+++.+...+++.++.+|..|+..+..+++. +.+.+.++++.++|.+++.
T Consensus 228 ~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~ 307 (852)
T 4fdd_A 228 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNG 307 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999988853 4567888888888999999999999999999974 4456778999999999999
Q ss_pred c-----------cC-----------ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc---cCCcc-------
Q psy9904 147 L-----------SD-----------KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP------- 194 (592)
Q Consensus 147 L-----------~D-----------~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq------- 194 (592)
+ .| .++.||.+|..+|++++...++ ..++.+++.+...+ +.+++
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 8 45 5678999999999999998753 34555555555444 11111
Q ss_pred -------------chhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhh---------hhHHHHH
Q psy9904 195 -------------HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEH---------KNLLILY 252 (592)
Q Consensus 195 -------------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~---------~~l~~~~ 252 (592)
.++.++|.+...++|++..||..++|++++++.+++.....+|+.+++... +....++
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~ 463 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 463 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 247788999999999999999999999999999887766677776666421 1224678
Q ss_pred HHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHHHHH
Q psy9904 253 DAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLP--YCEPVYRRCVSLIEQTL 330 (592)
Q Consensus 253 dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~p--y~~~v~~~~~~~l~~~l 330 (592)
.+++.+++..++.+. +|++.+++.|+..++.. +.+....+++|++.++.+.|..+.. |++.+ ++.+.+.+
T Consensus 464 ~aL~~l~~~~~~~l~--~~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l----~p~l~~~~ 535 (852)
T 4fdd_A 464 SAFATLEEEACTELV--PYLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQML----MPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHGGGGG--GGHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhhHhhH--hHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH----HHHHHHHH
Confidence 899999999999876 89999999999877542 2233456899999999999987754 55544 44444332
Q ss_pred HHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC-----------------CCChHH
Q psy9904 331 NQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-----------------DPMPEV 393 (592)
Q Consensus 331 ~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-----------------~~~~~v 393 (592)
.. .. +++++.+ .++++++.++.++|.+|.||+ +.+++.++..++ .++.++
T Consensus 536 ~~----l~------d~~~~~~-~~~~~l~~i~~~~g~~~~~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 602 (852)
T 4fdd_A 536 NM----LK------DEDKDLF-PLLECLSSVATALQSGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 602 (852)
T ss_dssp HH----SC------TTCTTHH-HHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH
T ss_pred Hh----cc------cccHHHH-HHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH
Confidence 21 11 1234453 689999999999999999998 566664444332 225779
Q ss_pred HHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCC
Q psy9904 394 RQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRP 471 (592)
Q Consensus 394 R~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~ 471 (592)
|..++.+++.+++.++.++.+|+ +.+++.++..++++.++||..|++++|+++..++..+.+|++.++|.+.+.++.+
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999998 7899999999999999999999999999999999999999999999999999654
Q ss_pred CCCchHHHHHHHHHHHhhhhCCCchHhHh----hhccc-CCCc----hHhHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy9904 472 NTPKTLLENTAITIGRLGYVCPHDVAPLC----SSLRN-IRDN----EEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVA 542 (592)
Q Consensus 472 ~~~~~v~~na~~~lgrl~~~~~~~~~p~~----~~L~~-~~d~----~Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i~ 542 (592)
+ .+++.+|+|++|.++...++.+.||+ ..|.. +++. .-++.+..++++|...+|..+.+++..|+..+.
T Consensus 683 ~--~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~ 760 (852)
T 4fdd_A 683 F--ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 760 (852)
T ss_dssp S--HHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred c--hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHH
Confidence 3 78999999999999988776777743 23222 2221 126779999999999999888777776655444
Q ss_pred ccC---CCch---hHHHHHHHHHHHHHhccChhhHHHH------HhcCCHHHHHHHHHhh
Q psy9904 543 SWS---TPKE---DLKEMFHKILHGFRTQVGDENWQRF------ADQFPDQLRDRLSAMY 590 (592)
Q Consensus 543 ~~~---~~~~---~~~~~~~~ll~~~~~~~~~~~~~~~------~~~l~~~~~~~l~~~~ 590 (592)
+.. ...+ .....+..+++..-+.+-. .+-.| +.+.++++++.++++.
T Consensus 761 ~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l 819 (852)
T 4fdd_A 761 TSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ-DFIFFCDAVASWINPKDDLRDMFCKIL 819 (852)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHHHhChHhHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 321 1122 2334455555543332221 23311 1244666666665543
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.97 E-value=6.8e-29 Score=289.65 Aligned_cols=470 Identities=11% Similarity=0.134 Sum_probs=333.3
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc------CCChhHHHHHHHHHHHHHhh---chhchhh-----hH
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF------HHDWEIKESGILALGAIAEG---CMNGMVP-----HL 136 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~------s~~~~~R~aa~~aLg~iaeg---~~~~i~~-----~l 136 (592)
..|++|+||..+|+.++..+++.+++.+++++.+.++ +++|+.|+||++++|+++++ |...+.. .+
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 3479999999999999999999999999999999887 78999999999999999986 3322221 23
Q ss_pred hh-HHHHHHHhccCC---hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhh
Q psy9904 137 NE-LVPFLITCLSDK---KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKA 212 (592)
Q Consensus 137 ~~-lvp~l~~~L~D~---~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~ 212 (592)
.. +...++..|+|+ +|.||.+|||++|+|++|+. .+++.++++.+++++ .|++.
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L------------------~d~~~ 510 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFL------------------QTDEY 510 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHT------------------TCSCH
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHh------------------CCCCh
Confidence 33 234566677888 99999999999999999873 356777776666654 55577
Q ss_pred HHHHHHHhhhhhhhhhhc----------cCCcccchHHHHHhh-----h---------hHHHHHHHHHHHHHHhcccCCC
Q psy9904 213 LVRAITCWTLSRYSHWVV----------SQPHDSYLKPLMTEH-----K---------NLLILYDAIGTLADSVGHHLNK 268 (592)
Q Consensus 213 ~vr~~a~~~L~~~a~~~~----------~~~~~~y~~~~~~~~-----~---------~l~~~~dai~~la~~~g~~~~~ 268 (592)
.|+..||+++.+++.... .+...||+.++|+.. + ....++.+++++++..++++.
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~- 589 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ- 589 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG-
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh-
Confidence 899999999999876321 234678888887632 1 223678899999999999887
Q ss_pred hhhHhhhhHHHHHHHhhcccC--Cccc-hHHHHHHHHHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy9904 269 PEYISLLMPPLIQKWNILKDE--DKDL-FPLLECLSSVATALQA-GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFD 344 (592)
Q Consensus 269 ~~y~~~lmp~L~~~~~~~~d~--~~~~-~~~~e~l~~ia~~~g~-~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~ 344 (592)
||++.+|+.|+..|+....+ ++.. ..+++|++.++.+.++ .+.+|.+. +++.+...++..
T Consensus 590 -p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~----~~p~~~~iL~~~----------- 653 (960)
T 1wa5_C 590 -PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDS----MMPTFLTVFSED----------- 653 (960)
T ss_dssp -GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHH----HHHHHHHHHHTT-----------
T ss_pred -hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHH----HHHHHHHHHHhh-----------
Confidence 89999999999988764222 2222 3589999999998554 34444444 445555555321
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHH--HHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHH
Q psy9904 345 APDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLY--QCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPI 422 (592)
Q Consensus 345 ~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~--~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~ 422 (592)
..++...+++.++.+.... ..|.+|+ ..+++.+. .+++... .-.....+|..+....++.+.. +..++..
T Consensus 654 --~~~~~~~~~~i~~~l~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~ 725 (960)
T 1wa5_C 654 --IQEFIPYVFQIIAFVVEQS-ATIPESI--KPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGI 725 (960)
T ss_dssp --CTTTHHHHHHHHHHHHHHC-SSCCTTT--GGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHH
T ss_pred --hHhhHHHHHHHHHHHHHhc-cCCCHHH--HHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHH-HHHHHHH
Confidence 1245566888888888766 6677887 57888888 7776542 2334455566655544444433 3445544
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh-CC-------
Q psy9904 423 LGQNLNPDLISVCNNATWAIGEISVKLGED-MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV-CP------- 493 (592)
Q Consensus 423 l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~-~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~-~~------- 493 (592)
+.+.+.+.. ....|++.+|.++.+++.. +.||++.+++.++..++.+.. ...+...+..++.++.. +|
T Consensus 726 ~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~l 802 (960)
T 1wa5_C 726 FQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKT-ERYVKKLTVFFGLISNKLGSDFLIHFI 802 (960)
T ss_dssp HHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCC-HHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-HhHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 444444443 3488999999999999988 999999999999999987643 23332233333322211 22
Q ss_pred -----CchH-----hHhhhcccCCCchHhHHHHHHHHHHHhhC---chhhhhhHHHHHHHhhc-----------------
Q psy9904 494 -----HDVA-----PLCSSLRNIRDNEEKDSAFRGMCAMITVN---PGGVVQEFIFFCDAVAS----------------- 543 (592)
Q Consensus 494 -----~~~~-----p~~~~L~~~~d~~Ek~~a~~~l~~li~~~---p~~~~~~~~~~~~~i~~----------------- 543 (592)
..+. .||..+.++.+..||..++.|+|.++..+ |..+.+.++.+|.++.+
T Consensus 803 ~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~e~ 882 (960)
T 1wa5_C 803 DEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDL 882 (960)
T ss_dssp HTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTCSCCSCC--
T ss_pred HhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCCcccccCCccccc
Confidence 2111 39999999999999999999999999988 77776778888776543
Q ss_pred --------cC----C--------------C--chhHHHHHHHHHHHHHhccChhhHHHH-HhcCCHHHHHHHHHhhC
Q psy9904 544 --------WS----T--------------P--KEDLKEMFHKILHGFRTQVGDENWQRF-ADQFPDQLRDRLSAMYG 591 (592)
Q Consensus 544 --------~~----~--------------~--~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~ 591 (592)
|. . . +.+.+..+.+.|+.+.+..|. .++++ .++|+++.++.|+..++
T Consensus 883 ~d~~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~-~~~~l~~~~l~~~~~~~l~~~~~ 958 (960)
T 1wa5_C 883 DNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGN-TFLNTILPQLTQENQVKLNQLLV 958 (960)
T ss_dssp ---CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTS-CHHHHHGGGSCHHHHHHHHHHHC
T ss_pred cccccccccchHHHHHHhCCCCCCCChhhhcCcCCHHHHHHHHHHHHhccCCc-hHHHHHhccCCHHHHHHHHHHHc
Confidence 10 0 0 025677788888888876554 68998 77999999999998764
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=3.1e-27 Score=272.64 Aligned_cols=493 Identities=14% Similarity=0.182 Sum_probs=367.5
Q ss_pred cchHHHHHHHHHHHHHhhhchhh---hH-hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-----------------hh
Q psy9904 72 DWNLRKCSAAALDVLANVFREEL---LP-VLLPILKETLFHHDWEIKESGILALGAIAEGC-----------------MN 130 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~v---l~-~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~-----------------~~ 130 (592)
+|.+|+.+..+|..++...++.+ ++ .+++.+...+.+.+..+|..|+..++.+++.. ..
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 58999999999999999888643 44 77777778889999999999999999998763 22
Q ss_pred chhhhHhhHHHHHHHhccC-------ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc-C--Ccc------
Q psy9904 131 GMVPHLNELVPFLITCLSD-------KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN-G--MVP------ 194 (592)
Q Consensus 131 ~i~~~l~~lvp~l~~~L~D-------~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~-~--~vq------ 194 (592)
.+.++++.++|.++..|.+ .++.+|.+++.+|+.++..+++ ..++.+++.+...++ + +++
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~ 392 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITADNWRNREAAVMA 392 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 4567789999999999974 3578999999999999998763 345666666555441 1 110
Q ss_pred ---------------chhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCC-cccchHHHHHh-------h-hhHHH
Q psy9904 195 ---------------HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTE-------H-KNLLI 250 (592)
Q Consensus 195 ---------------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~-~~~y~~~~~~~-------~-~~l~~ 250 (592)
.++.++|.+...++|++..||..++|++++++.+++... ..+|+.+++.. . +....
T Consensus 393 l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~ 472 (861)
T 2bpt_A 393 FGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp HHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHH
Confidence 235678888888899999999999999999998876431 23344444331 1 12235
Q ss_pred HHHHHHHHHHHhc----ccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHH
Q psy9904 251 LYDAIGTLADSVG----HHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSL 325 (592)
Q Consensus 251 ~~dai~~la~~~g----~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~ 325 (592)
+..+++.+++.++ ..+. +|++.+++.|+..+... +.+.++ ..++++++.++...|..+.||+..+++.++..
T Consensus 473 a~~al~~l~~~~~~~~~~~l~--~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~ 549 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIY--NFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGG--GGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhH--HHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence 6778888888886 3444 89999999999876531 222333 57899999999999999988888777666655
Q ss_pred HHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCCh-HHHHHHHHHHHHH
Q psy9904 326 IEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP-EVRQSSFALLGDL 404 (592)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~-~vR~~a~~~l~~l 404 (592)
+...+........++ ..+...+.+..++++++.++..+|.++.||+ +.+++.+...+++.+. .+|+.++.+++.+
T Consensus 550 l~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l 625 (861)
T 2bpt_A 550 LGQTMSVDENQLTLE--DAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHTTSCGGGCCHH--HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred HHHHHhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHHHHHHHHHHHH
Confidence 554311000000000 0001234567899999999999999999998 6899999999988777 8999999999999
Q ss_pred HHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q psy9904 405 TKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAIT 484 (592)
Q Consensus 405 a~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~ 484 (592)
+..++..+.||++.++|.+.+.++++++.+|..|++++|.++...|..+.||++.+++.+...+++++.++.++..++.+
T Consensus 626 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~ 705 (861)
T 2bpt_A 626 AASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999998765557899999999
Q ss_pred HHHhhhhCCCchHhHhhhc----cc-CC------Cch-------HhHHHHHHHHHHHhh-C--chhhhhhHHHHHHHhhc
Q psy9904 485 IGRLGYVCPHDVAPLCSSL----RN-IR------DNE-------EKDSAFRGMCAMITV-N--PGGVVQEFIFFCDAVAS 543 (592)
Q Consensus 485 lgrl~~~~~~~~~p~~~~L----~~-~~------d~~-------Ek~~a~~~l~~li~~-~--p~~~~~~~~~~~~~i~~ 543 (592)
+|.++...++.+.||+..+ .. +. |.+ -|..++.+++.++.. + |..+.+.+..++..+..
T Consensus 706 l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~ 785 (861)
T 2bpt_A 706 FGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQ 785 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999998887777744321 11 11 111 146677888887753 3 35555666666665543
Q ss_pred cC-CC----chhHHHHHHHHHHHHHhcc-ChhhHHHHHh
Q psy9904 544 WS-TP----KEDLKEMFHKILHGFRTQV-GDENWQRFAD 576 (592)
Q Consensus 544 ~~-~~----~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~ 576 (592)
.. +. +.+++.....++..+...+ |. .+..++.
T Consensus 786 ~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~-~~~~~~~ 823 (861)
T 2bpt_A 786 VAEDPQLYSEDATSRAAVGLIGDIAAMFPDG-SIKQFYG 823 (861)
T ss_dssp HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS-TTGGGTT
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHHHcCCc-hHHHHHh
Confidence 32 22 5678888888888888877 54 4554444
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=3.2e-27 Score=273.09 Aligned_cols=464 Identities=16% Similarity=0.220 Sum_probs=335.3
Q ss_pred hHHHHHHHHHHHHHhhhc------------------------hhhhHhHHHHHHHhhc-------CCChhHHHHHHHHHH
Q psy9904 74 NLRKCSAAALDVLANVFR------------------------EELLPVLLPILKETLF-------HHDWEIKESGILALG 122 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~------------------------~~vl~~ll~~l~~~l~-------s~~~~~R~aa~~aLg 122 (592)
.+|..|...+..+++... ...++.++|.+.+.+. +.+|.+|++|..+|+
T Consensus 274 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~ 353 (876)
T 1qgr_A 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence 488888888888876421 0123556666656554 457999999999999
Q ss_pred HHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHH
Q psy9904 123 AIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPF 202 (592)
Q Consensus 123 ~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~ 202 (592)
.+++++++ ..++.++|.+...++|++|++|.+|+++||.+++.+.+ ..+.+ .++.++|.
T Consensus 354 ~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~--------------~~~~~l~~ 412 (876)
T 1qgr_A 354 LLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP----SQLKP--------------LVIQAMPT 412 (876)
T ss_dssp HHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH----HHHHH--------------HHHHHHHH
T ss_pred HHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH----HHHHH--------------HHHHHHHH
Confidence 99999885 35788999999999999999999999999999865431 11111 12456777
Q ss_pred HHHhcCchhhHHHHHHHhhhhhhhhhhccCC-cccchHHHHHhh--------hhHHHHHHHHHHHHHHhc----------
Q psy9904 203 LITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMTEH--------KNLLILYDAIGTLADSVG---------- 263 (592)
Q Consensus 203 l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~-~~~y~~~~~~~~--------~~l~~~~dai~~la~~~g---------- 263 (592)
+...++|++..||..++++++++++..+... ..+|+.+++... +....+..+++.++...+
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~ 492 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQE 492 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 7777888899999999999999998876532 346666655431 112356778888888876
Q ss_pred ----ccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcC
Q psy9904 264 ----HHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQ 338 (592)
Q Consensus 264 ----~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~ 338 (592)
..+. +|++.++|.|++.+.....+.+.+ ..+++|++.++...|.++.||+..+++.++..+...+.. ..
T Consensus 493 ~~~~~~l~--~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~----~~ 566 (876)
T 1qgr_A 493 EPATYCLS--SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM----ES 566 (876)
T ss_dssp CCCCCSST--TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT----TT
T ss_pred cccchhhh--HhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 2254 899999999998765332222333 578999999999999988888877766555544433210 00
Q ss_pred CCCCCCCCC----hhHHHHHHHHHHHHHhhhh-hhhHhhhccCchHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHchhh
Q psy9904 339 NPEQFDAPD----KDFMIVALDLLSGLAEGLD-MHIDSLVSNSNIMHLLYQCMQDPM--PEVRQSSFALLGDLTKACFSH 411 (592)
Q Consensus 339 ~~~~~~~~d----~~~~~~ald~l~~l~~~lg-~~~~~~~~~~~l~~~l~~~l~~~~--~~vR~~a~~~l~~la~~~~~~ 411 (592)
. ....+| .+.+..++.+++.++..+| ..+.||+ +.+++.++..+++.. ..+|+.++.+++.++..++..
T Consensus 567 ~--~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~ 642 (876)
T 1qgr_A 567 H--IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE 642 (876)
T ss_dssp S--CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG
T ss_pred c--cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh
Confidence 0 001122 2346778999999999999 8999999 789999999998764 479999999999999999999
Q ss_pred hhhhhhhHHHHHHhccCCC-ChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 412 VHPCISDFMPILGQNLNPD-LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 412 ~~~~l~~llp~l~~~l~~~-~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
+.||++.++|.+...+.+. ++.+|..|++++|.++...+..+.||++.+++.+...+++++.+..++.++++++|+++.
T Consensus 643 ~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 643 FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 9999999999999999876 789999999999999999999999999999999999998754457899999999999998
Q ss_pred hCCCchHhHhh----hcc---cCCC---ch--------HhHHHHHHHHHHHhh-C---------chhhhhhHHHHHHHhh
Q psy9904 491 VCPHDVAPLCS----SLR---NIRD---NE--------EKDSAFRGMCAMITV-N---------PGGVVQEFIFFCDAVA 542 (592)
Q Consensus 491 ~~~~~~~p~~~----~L~---~~~d---~~--------Ek~~a~~~l~~li~~-~---------p~~~~~~~~~~~~~i~ 542 (592)
..+..+.+|+. .|. ..+. ++ -|..++.++..++.. + ...+.+++..++..+.
T Consensus 723 ~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 802 (876)
T 1qgr_A 723 AIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID 802 (876)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHH
Confidence 77766655332 111 1111 11 144456666655542 1 1344555555555443
Q ss_pred cc-CCC--chhHHHHHHHHHHHHHhccCh
Q psy9904 543 SW-STP--KEDLKEMFHKILHGFRTQVGD 568 (592)
Q Consensus 543 ~~-~~~--~~~~~~~~~~ll~~~~~~~~~ 568 (592)
.. .++ +..++......|..+...+|.
T Consensus 803 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 803 HIAGDEDHTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp HHHTCSCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 32 233 567777777777776666654
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.95 E-value=2.3e-25 Score=266.69 Aligned_cols=472 Identities=11% Similarity=0.136 Sum_probs=345.2
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhc------hhhhHhhHHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNG------MVPHLNELVPFLI 144 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~------i~~~l~~lvp~l~ 144 (592)
.+|.+|++|+.+|+.++..+++..++.+++.+.+.+.+++..+|++|+.+|+.+++.++.. ...+.+.++|.++
T Consensus 60 ~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~ 139 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHH
Confidence 3589999999999999999988888999999999999999999999999999999887753 4568999999999
Q ss_pred HhccC-ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhh
Q psy9904 145 TCLSD-KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLS 223 (592)
Q Consensus 145 ~~L~D-~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~ 223 (592)
..++| +++.+|..|+.+|+.+++..++ ...+|++.+++.++.. +.|++..+|..++.+++
T Consensus 140 ~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l~~~~~~ll~~l~~~------------------L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 140 SAIAKQEDVSVQLEALDIMADMLSRQGG-LLVNFHPSILTCLLPQ------------------LTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp HHHSCCSCHHHHHHHHHHHHHHHHHTCS-SCTTTHHHHHHHHGGG------------------GGCSSHHHHHHHHHHHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHH------------------HcCCcHHHHHHHHHHHH
Confidence 99995 8899999999999999987654 3445666666665554 45667789999999999
Q ss_pred hhhhhhccCCcccchHHHHH---hh---hhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHH
Q psy9904 224 RYSHWVVSQPHDSYLKPLMT---EH---KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPL 296 (592)
Q Consensus 224 ~~a~~~~~~~~~~y~~~~~~---~~---~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~ 296 (592)
.++...+...+...+..+++ .. .....++.+++.++..+|..+. +|++.++|.+++.++ +++.++ ..+
T Consensus 201 ~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~---d~~~~vR~~a 275 (1230)
T 1u6g_C 201 HLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCN---VDDDELREYC 275 (1230)
T ss_dssp HHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHS---SCCTTTHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 88876654433322222222 11 1223578899999999998886 899999999998764 444444 578
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHH--HH--H--HHHh--hcC--CCCCC--------CCC--ChhHHHHHHH
Q psy9904 297 LECLSSVATALQAGFLPYCEPVYRRCVSLIEQ--TL--N--QHMA--NSQ--NPEQF--------DAP--DKDFMIVALD 356 (592)
Q Consensus 297 ~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~--~l--~--~~~~--~~~--~~~~~--------~~~--d~~~~~~ald 356 (592)
+++++.++...|..|.||++.+++.++..+.. .. . ..+. ..+ ..++. +.+ ..+.|..+++
T Consensus 276 ~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~ 355 (1230)
T 1u6g_C 276 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355 (1230)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHH
Confidence 99999999999999999998877655543321 00 0 0000 000 00000 001 1235788999
Q ss_pred HHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch-------------------hhhhhhhh
Q psy9904 357 LLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF-------------------SHVHPCIS 417 (592)
Q Consensus 357 ~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~-------------------~~~~~~l~ 417 (592)
+++.++...|..|.+|+ +.+++.+...+.+++.+||..++.+++.+++.++ ..+.++++
T Consensus 356 ~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 433 (1230)
T 1u6g_C 356 CLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433 (1230)
T ss_dssp HHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred HHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh
Confidence 99999998877789999 7899999999999999999999999999988654 34577889
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-Cch
Q psy9904 418 DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-HDV 496 (592)
Q Consensus 418 ~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-~~~ 496 (592)
.++|.+.+.++++.+.+|..++.++|.++...+..+.+|++.+++.+...++++...+.++..++.+++.+...++ +.+
T Consensus 434 ~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~ 513 (1230)
T 1u6g_C 434 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF 513 (1230)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999998888888999999999999998765335888999999998876554 445
Q ss_pred HhHhh----hcc-cCCCchH--hHHHHHHHHHHHhh-Cc------hhhhhhHHHHHHHhhcc---CCCchhHHHHHHHHH
Q psy9904 497 APLCS----SLR-NIRDNEE--KDSAFRGMCAMITV-NP------GGVVQEFIFFCDAVASW---STPKEDLKEMFHKIL 559 (592)
Q Consensus 497 ~p~~~----~L~-~~~d~~E--k~~a~~~l~~li~~-~p------~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~ll 559 (592)
.||+. .|. .+.|..- +..|+.++..++.. .+ ..+.+.+..++..+..+ .+.+.+++......+
T Consensus 514 ~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~l 593 (1230)
T 1u6g_C 514 HPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCM 593 (1230)
T ss_dssp HHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 55432 221 1233322 34577788888853 33 24455566666655442 345567777666666
Q ss_pred HHHHhccCh
Q psy9904 560 HGFRTQVGD 568 (592)
Q Consensus 560 ~~~~~~~~~ 568 (592)
..+....|+
T Consensus 594 g~L~~~~g~ 602 (1230)
T 1u6g_C 594 GQIICNLGD 602 (1230)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHhCc
Confidence 666555553
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.95 E-value=6.3e-25 Score=262.97 Aligned_cols=484 Identities=10% Similarity=0.125 Sum_probs=345.6
Q ss_pred hHHHHHHHHHHHHHhhhchh---------hhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHH
Q psy9904 74 NLRKCSAAALDVLANVFREE---------LLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFL 143 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~---------vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l 143 (592)
.+|.+|+.+|+.++..+++. .++.++|.+.+.+. +++|.+|++|+.+|+.+++..++.+.+|++.+++.+
T Consensus 101 ~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l 180 (1230)
T 1u6g_C 101 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 47999999999999998864 68999999999998 589999999999999999988888889999999999
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccC--Cc------------------cchhhhHHHH
Q psy9904 144 ITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG--MV------------------PHLNELVPFL 203 (592)
Q Consensus 144 ~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~--~v------------------q~l~~l~p~l 203 (592)
++.|.|+++.||..|+.+|+.++....+......++.+++.|.+.-+. |. .+++.++|++
T Consensus 181 ~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~l 260 (1230)
T 1u6g_C 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 260 (1230)
T ss_dssp GGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765433344455555555432111 11 1347889999
Q ss_pred HHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh---------------------------------------
Q psy9904 204 ITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE--------------------------------------- 244 (592)
Q Consensus 204 ~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~--------------------------------------- 244 (592)
...+.|++..+|..+..+++.+++..+.+ +.||+..++..
T Consensus 261 l~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 339 (1230)
T 1u6g_C 261 VKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 339 (1230)
T ss_dssp HHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHTTCCCCC-------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccc
Confidence 99998888889998888888877655432 23333222110
Q ss_pred -------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhc------
Q psy9904 245 -------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAG------ 310 (592)
Q Consensus 245 -------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~------ 310 (592)
.+....+.++++.++...+..+. +|++.++|.++..+ .|.+.++ ..++++++.++...|..
T Consensus 340 ~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 414 (1230)
T 1u6g_C 340 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRF---KEREENVKADVFHAYLSLLKQTRPVQSWLCD 414 (1230)
T ss_dssp -----CTTHHHHHHHHHHHHHHTTCCTTHH--HHHTTTHHHHHSTT---SCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred ccccccCHHHHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHHhccccccccC
Confidence 01134567778877775554443 89999999988654 3444444 57888888888877641
Q ss_pred ---------cccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHH
Q psy9904 311 ---------FLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHL 381 (592)
Q Consensus 311 ---------f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~ 381 (592)
....+...++.+++.+.+.+. +++...+..++.+++.++...+..+.+|+ ..+++.
T Consensus 415 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-------------~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~ 479 (1230)
T 1u6g_C 415 PDAMEQGETPLTMLQSQVPNIVKALHKQMK-------------EKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPG 479 (1230)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTT-------------CSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHH
T ss_pred ccccccccchHHHHHHHhhHHHHHHHHHhc-------------cCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHH
Confidence 111222233333344333331 12345677899999999998877778888 789999
Q ss_pred HHHHhCCCCh--HHHHHHHHHHHHHHHHchhh-hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc-------
Q psy9904 382 LYQCMQDPMP--EVRQSSFALLGDLTKACFSH-VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE------- 451 (592)
Q Consensus 382 l~~~l~~~~~--~vR~~a~~~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~------- 451 (592)
+...++++.. .+|..++..++.+.+..+.. +.||++.++|.++..+++.++.|+..|++++++++..++.
T Consensus 480 l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 559 (1230)
T 1u6g_C 480 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF 559 (1230)
T ss_dssp HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccccc
Confidence 9999998764 89999999999998877655 9999999999999999999999999999999999988776
Q ss_pred hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh----Hhhhccc-CCCchHhHHHHHHHHHHHhh-
Q psy9904 452 DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP----LCSSLRN-IRDNEEKDSAFRGMCAMITV- 525 (592)
Q Consensus 452 ~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p----~~~~L~~-~~d~~Ek~~a~~~l~~li~~- 525 (592)
.+.||++.+++.++..+...+.+..++++++.++|.++...++.+.+ ++..|.. +.+...|..+.+++..++..
T Consensus 560 ~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~ 639 (1230)
T 1u6g_C 560 DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP 639 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS
T ss_pred chHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc
Confidence 78999999999999999655555789999999999999887765543 3333322 33444578888999888752
Q ss_pred CchhhhhhHHHHHHHhhccC-CCchhHHHH----HHHHHHHHHhccChhhHHHHHhcC
Q psy9904 526 NPGGVVQEFIFFCDAVASWS-TPKEDLKEM----FHKILHGFRTQVGDENWQRFADQF 578 (592)
Q Consensus 526 ~p~~~~~~~~~~~~~i~~~~-~~~~~~~~~----~~~ll~~~~~~~~~~~~~~~~~~l 578 (592)
.+..+.+.+..++..+.... +.+..++.. +..++..+...++.+.+.+++.++
T Consensus 640 ~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~l 697 (1230)
T 1u6g_C 640 LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 697 (1230)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 22223344445555554432 334444443 444444444334444566666655
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=3.4e-25 Score=244.24 Aligned_cols=384 Identities=14% Similarity=0.157 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
|.+|.+|+.+++.++..+++...+.++|.+.+.++|+++.+|.+|+.+||.+++.++.. .+.+.++|.+...++|+++
T Consensus 140 ~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~ 217 (588)
T 1b3u_A 140 FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD 217 (588)
T ss_dssp HHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH
Confidence 34444444444444444444344455555555556666666666666666666655431 2345666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCcc-----c-------------hhhhHHHHHHhcCchhhHH
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP-----H-------------LNELVPFLITCLSDKKALV 214 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq-----~-------------l~~l~p~l~~il~d~~~~v 214 (592)
.||..|+.+|+.+++.+.++...+.+.|++..+++.-+.+|+ . .+.++|++..+++|++..|
T Consensus 218 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 297 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHH
Confidence 666666666666666543211112222333333322211121 0 1345666666666666667
Q ss_pred HHHHHhhhhhhhhhhccC----CcccchHHHHHh------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHh
Q psy9904 215 RAITCWTLSRYSHWVVSQ----PHDSYLKPLMTE------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284 (592)
Q Consensus 215 r~~a~~~L~~~a~~~~~~----~~~~y~~~~~~~------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~ 284 (592)
|..++++++.++...+.. .+.+.+.|.+.. .+....+..+++.++..+|.+ ...+.++|.+...++
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~p~l~~~l~ 373 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD----NTIEHLLPLFLAQLK 373 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH----HHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh----HHHHHHHHHHHHHhC
Confidence 777777777666555433 122223332221 112234555666666666544 234556666665442
Q ss_pred hcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy9904 285 ILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAE 363 (592)
Q Consensus 285 ~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~ 363 (592)
|.++++ ..++++++.++..+|... + .+.+++.+...+ . +++...+..++++++.++.
T Consensus 374 ---d~~~~Vr~~a~~~l~~l~~~~~~~~--~----~~~~lp~l~~~~-------~------d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 374 ---DECPEVRLNIISNLDCVNEVIGIRQ--L----SQSLLPAIVELA-------E------DAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp ---CSCHHHHHHHHTTCHHHHHHSCHHH--H----HHHHHHHHHHHH-------T------CSSHHHHHHHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHHHhcCHHH--H----HHHHHHHHHHHh-------c------CCCchHHHHHHHHHHHHHH
Confidence 333333 456666666666655431 1 112233333322 1 1234566778888888888
Q ss_pred hhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHH
Q psy9904 364 GLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIG 443 (592)
Q Consensus 364 ~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg 443 (592)
.+|..+. . +.+++.+...+++.+..||+.|+..++.++..++..+ +++.++|.+.+.++++++.+|..+++++|
T Consensus 432 ~~~~~~~--~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~ 505 (588)
T 1b3u_A 432 QLGVEFF--D--EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505 (588)
T ss_dssp HHCGGGC--C--HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred HcCHHHH--H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 8776532 1 3567888888888888888888888888888877654 46778888887777788888888888888
Q ss_pred HHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 444 EISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 444 ~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
.++..++.. .|.+.+++.+...+++++ +.|+.++++++|+++...+.
T Consensus 506 ~l~~~~~~~--~~~~~~~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 506 VLSEVCGQD--ITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHGGGCSC--HHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHhcCHH--HHHHHHHHHHHhhCCCCC--chHHHHHHHHHHHHHHHhch
Confidence 888776644 377788888888877654 77888888888888865543
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.94 E-value=3.9e-25 Score=243.80 Aligned_cols=377 Identities=15% Similarity=0.140 Sum_probs=288.6
Q ss_pred cchHHHHHHHHHHHHHhhhch-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 72 DWNLRKCSAAALDVLANVFRE-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
++.+|++|+.+|+.++..+|+ ...+.++|.+...++|++|.+|++|+.+|+.+++.+++. .+.+.++|.+...++|+
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDK 254 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCC
Confidence 478999999999999999985 566889999999999999999999999999999987742 35677999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc---cCCcc----------------------chhhhHHHHHH
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP----------------------HLNELVPFLIT 205 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq----------------------~l~~l~p~l~~ 205 (592)
+|.||.+++.+||.+++.++++ .+.+.+++.+.+.+ +..|+ .++.++|++..
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999876542 12223333333333 11121 13568899999
Q ss_pred hcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh-----hhhH-HHHHHHHHHHHHHhcccCCChhhHhhhhHHH
Q psy9904 206 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE-----HKNL-LILYDAIGTLADSVGHHLNKPEYISLLMPPL 279 (592)
Q Consensus 206 il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~-----~~~l-~~~~dai~~la~~~g~~~~~~~y~~~lmp~L 279 (592)
+++|++..+|..++++++.++..++.+...+++.|.+.. ..++ ..++.+++.++...|.+ .+.+.++|.+
T Consensus 332 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~lp~l 407 (588)
T 1b3u_A 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR----QLSQSLLPAI 407 (588)
T ss_dssp HHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH----HHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHH
Confidence 999999999999999999998877654434445554422 1222 35667777777766544 3567788888
Q ss_pred HHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHH
Q psy9904 280 IQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLL 358 (592)
Q Consensus 280 ~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l 358 (592)
.+.. .+.+.. +..++++++.++..+|..+. .+.+ ++.+...+. +++...|..++.++
T Consensus 408 ~~~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l----~~~l~~~l~-------------d~~~~Vr~~a~~~l 465 (588)
T 1b3u_A 408 VELA---EDAKWRVRLAIIEYMPLLAGQLGVEFF--DEKL----NSLCMAWLV-------------DHVYAIREAATSNL 465 (588)
T ss_dssp HHHH---TCSSHHHHHHHHHHHHHHHHHHCGGGC--CHHH----HHHHHHGGG-------------CSSHHHHHHHHHHH
T ss_pred HHHh---cCCCchHHHHHHHHHHHHHHHcCHHHH--HHHH----HHHHHHHhc-------------CCcHHHHHHHHHHH
Confidence 7654 233333 35788999999999998753 3333 344444331 23567889999999
Q ss_pred HHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHH
Q psy9904 359 SGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNA 438 (592)
Q Consensus 359 ~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A 438 (592)
+.++..+|.++. . +.+++.+...+++++..+|..++.+++.++..++... |++.++|.+++.++++.+.||.++
T Consensus 466 ~~l~~~~~~~~~--~--~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 466 KKLVEKFGKEWA--H--ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHHHCHHHH--H--HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHhCchhH--H--HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHH
Confidence 999999987642 3 5678888888999999999999999999999988754 789999999999999999999999
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 439 TWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 439 ~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
++++|.++...|..+. -+.++|.|..+++++ +..++.+|+.+++.+.
T Consensus 540 ~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~--d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 540 AKSLQKIGPILDNSTL--QSEVKPILEKLTQDQ--DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhchhhh--HHHHHHHHHHHcCCC--chhHHHHHHHHHHHhh
Confidence 9999999988876542 256777777765544 4899999999999875
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.94 E-value=7.7e-25 Score=256.11 Aligned_cols=380 Identities=12% Similarity=0.189 Sum_probs=266.2
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcC-----CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFH-----HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s-----~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
+.|++++.+|..++..+|+.+++.+++++.+.+++ ++|+.|+||+++||++++||.+...++++.+++.+ ..+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcC
Confidence 69999999999999999999999999999988865 79999999999999999999987778999999944 4444
Q ss_pred --CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 149 --DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 149 --D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
|+++.||.++||++|+|++|+.+ +.+|++++++.|+.+++ ..|+..||+++.++
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~--~~~~l~~vl~~l~~~l~---------------------~~v~~~A~~al~~l- 570 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLME--NPAYIPPAINLLVRGLN---------------------SSMSAQATLGLKEL- 570 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH---------------------SSCHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhC---------------------hHHHHHHHHHHHHH-
Confidence 67999999999999999999975 34788877776655431 33556666666554
Q ss_pred hhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q psy9904 227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATA 306 (592)
Q Consensus 227 ~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~ 306 (592)
++.++..+. ||++.||..+.+.++.-..+......+++|++.++.+
T Consensus 571 --------------------------------~~~~~~~l~--p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 571 --------------------------------CRDCQLQLK--PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp --------------------------------HHHCHHHHH--HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------HHHHHHhcc--ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 334444554 8999999999887764111122346899999999987
Q ss_pred Hh-hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh-------------hhHhh
Q psy9904 307 LQ-AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM-------------HIDSL 372 (592)
Q Consensus 307 ~g-~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~-------------~~~~~ 372 (592)
++ .++.||+..+++.++..+...+. ++.. +++++.....++++|++++++++. .+.+|
T Consensus 617 ~~~~~~~~~~~~ll~~l~~~l~~~~~-------~~~~-~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~ 688 (971)
T 2x1g_F 617 LRPEEIPKYLDIIVSPCFEELQAICQ-------ADSK-TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV 688 (971)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHT-------C----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCC-ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH
Confidence 75 67778877776655555554431 1100 111223345677888888887764 24566
Q ss_pred hccCchHHHHHHHhCC--CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 373 VSNSNIMHLLYQCMQD--PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 373 ~~~~~l~~~l~~~l~~--~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
+ ..+++++...+++ .+.++.+.++.++++++..+++.+.||++.+++.++..++.... ..++|.++.++...|
T Consensus 689 ~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 689 M--QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFF 763 (971)
T ss_dssp H--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCC
T ss_pred H--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhC
Confidence 6 5789988887754 36799999999999999999999999999999999998876432 348899999998877
Q ss_pred ch------hhhhHHHHHHHHHHHHcCC-----CCCchHHHHHHHHHHHhhhhCCCchH--hH-----h----hhcccCCC
Q psy9904 451 ED------MRRYVPMVINQLIIIINRP-----NTPKTLLENTAITIGRLGYVCPHDVA--PL-----C----SSLRNIRD 508 (592)
Q Consensus 451 ~~------~~p~~~~il~~L~~~l~~~-----~~~~~v~~na~~~lgrl~~~~~~~~~--p~-----~----~~L~~~~d 508 (592)
.+ +.+.+..+...+..+++.. +..+.+++....-++++...+|..+. |. + ..|. ..+
T Consensus 764 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~-~~~ 842 (971)
T 2x1g_F 764 KDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMT-LPE 842 (971)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHT-SSC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcC-CCC
Confidence 53 4445555555566666653 11467888888899999988886543 21 1 2222 233
Q ss_pred chHhHHHHHHHHHHHhhC
Q psy9904 509 NEEKDSAFRGMCAMITVN 526 (592)
Q Consensus 509 ~~Ek~~a~~~l~~li~~~ 526 (592)
..-..++++.+..++...
T Consensus 843 ~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 843 SGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 333567888887777654
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.93 E-value=2.5e-23 Score=243.17 Aligned_cols=390 Identities=17% Similarity=0.190 Sum_probs=279.7
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhh----cCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETL----FHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l----~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D 149 (592)
+.|++++.+|..++..+|+.+++.+++.+.+.+ .+++|+.|+|+++++|++++++.+...++++.+++.+. .+.+
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCC
Confidence 469999999999999999999999999999988 67899999999999999999999766788999999654 5566
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh
Q psy9904 150 KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229 (592)
Q Consensus 150 ~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~ 229 (592)
+++.||.++||++|+|++|+.. +.+|++++++.|+..+ .+ ..|+..||+++.++++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~--~~~~l~~vl~~l~~~l------------------~~--~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLAD--HPVMINSVLPLVLHAL------------------GN--PELSVSSVSTLKKICREC 558 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHH--CHHHHTTTHHHHHHHT------------------TC--GGGHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHh------------------CC--chHHHHHHHHHHHHHHHH
Confidence 7899999999999999999875 2356666665555543 33 457788999999888765
Q ss_pred ccCCcccchHHHHHhh-----------hhHHHHHHHHHHHHHHhc-ccCCChhhHhhhhHHHHHHHhhcccC--Ccc---
Q psy9904 230 VSQPHDSYLKPLMTEH-----------KNLLILYDAIGTLADSVG-HHLNKPEYISLLMPPLIQKWNILKDE--DKD--- 292 (592)
Q Consensus 230 ~~~~~~~y~~~~~~~~-----------~~l~~~~dai~~la~~~g-~~~~~~~y~~~lmp~L~~~~~~~~d~--~~~--- 292 (592)
+ ....||+.++++.. +....+|+|++.++.+++ .... +|++.+|+++.+.|+.+..+ +++
T Consensus 559 ~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 635 (963)
T 2x19_B 559 K-YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL--KNLHSLISPYIQQLEKLAEEIPNPSNKL 635 (963)
T ss_dssp G-GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH--HHHHHHHHHHHHHHHHHHSSCSCHHHHH
T ss_pred H-HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 34678887777532 223477999999998776 4444 89999999999998754222 111
Q ss_pred -chHHHHHHHHHHHHHhhccc------------------cccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHH-
Q psy9904 293 -LFPLLECLSSVATALQAGFL------------------PYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI- 352 (592)
Q Consensus 293 -~~~~~e~l~~ia~~~g~~f~------------------py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~- 352 (592)
+..+++|++.++++++..+. .-+.++++++++.+...+..... +.+...
T Consensus 636 ~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~v~e~ 704 (963)
T 2x19_B 636 AIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN-----------DAQVVEA 704 (963)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccC-----------chHHHHH
Confidence 24688999999999875321 01233555666666655543210 111222
Q ss_pred -------------------------------------HHHHHHHHHHh--hhhhhhHhhhccCchHHHHHHH----hC-C
Q psy9904 353 -------------------------------------VALDLLSGLAE--GLDMHIDSLVSNSNIMHLLYQC----MQ-D 388 (592)
Q Consensus 353 -------------------------------------~ald~l~~l~~--~lg~~~~~~~~~~~l~~~l~~~----l~-~ 388 (592)
..+.+++.++. +.+..+.+++ ..++..++.+ ++ +
T Consensus 705 ~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~--~~~l~~~~~~~l~~~~~~ 782 (963)
T 2x19_B 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPI--EALFLLVTSVTLTLFQQG 782 (963)
T ss_dssp HHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHH--HHHHHHHHHHHHHHHhhC
Confidence 34445555555 3322233333 2233333333 22 2
Q ss_pred --CChHHHHHHHHHHHHHHHHchhhhh--hh-hhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC--c----hhhhhH
Q psy9904 389 --PMPEVRQSSFALLGDLTKACFSHVH--PC-ISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG--E----DMRRYV 457 (592)
Q Consensus 389 --~~~~vR~~a~~~l~~la~~~~~~~~--~~-l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~--~----~~~p~~ 457 (592)
..+++|++.|.+++++.++++..+. +. +..+++.++..++..+..+...+++.+.++....+ . -+.++.
T Consensus 783 ~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 862 (963)
T 2x19_B 783 PRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDG 862 (963)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSH
T ss_pred cccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3689999999999999999988764 55 88899999999999999999999999999886543 1 245788
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhhc
Q psy9904 458 PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSL 503 (592)
Q Consensus 458 ~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L 503 (592)
..++..++..+.... ++...+..+..+..+...+++.+..|+..+
T Consensus 863 ~~l~~~l~~~l~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~l~~~ 907 (963)
T 2x19_B 863 RMLLIAVLEAIGGQA-SRSLMDCFADILFALNKHCFSLLSMWIKEA 907 (963)
T ss_dssp HHHHHHHHHHHTTTS-CGGGHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC-ChhHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 888888888886533 466667777777777766776666677543
No 14
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.92 E-value=6.9e-23 Score=236.88 Aligned_cols=462 Identities=15% Similarity=0.241 Sum_probs=314.2
Q ss_pred HHHHHHHhhhchhhhHhHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhchh-chhhhHhhHHHHHHHhcc-----CChH
Q psy9904 81 AALDVLANVFREELLPVLLPILKETLFH--HDWEIKESGILALGAIAEGCMN-GMVPHLNELVPFLITCLS-----DKKA 152 (592)
Q Consensus 81 ~~L~~la~~~~~~vl~~ll~~l~~~l~s--~~~~~R~aa~~aLg~iaeg~~~-~i~~~l~~lvp~l~~~L~-----D~~~ 152 (592)
.+|..++...++++++.+++.+.+.+.+ .+|+.|+|+++|+|+|++|+.+ ...+++++++|.|+..+. |+++
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 7888888888889999999999888765 6899999999999999999885 367999999999999886 6889
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc-
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS- 231 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~- 231 (592)
+||.++||++|+|++|+.. +.+|+++++..|+..+ .++++.|+..||+++.++++.+..
T Consensus 515 ~v~~t~~~~lGry~~wl~~--~~~~L~~vl~~L~~~l------------------~~~~~~v~~~A~~al~~l~~~c~~~ 574 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFM------------------HETHEGVQDMACDTFIKIVQKCKYH 574 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHH--CHHHHHHHHHHHHHHT------------------TCSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHh------------------hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999964 5778988888887765 333566888899999998877652
Q ss_pred ------CCcccchHHHHHh---------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhccc--------
Q psy9904 232 ------QPHDSYLKPLMTE---------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKD-------- 288 (592)
Q Consensus 232 ------~~~~~y~~~~~~~---------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d-------- 288 (592)
....||+.++++. .+++..+|+++++++.+++....++.|++.+|+++.+.|+.+..
T Consensus 575 l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~ 654 (1023)
T 4hat_C 575 FVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTL 654 (1023)
T ss_dssp HHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTG
T ss_pred hhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchh
Confidence 1235788877653 24456899999999999886654568999999999999976531
Q ss_pred -----CCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH---HHHHHhhc-----CCCC---------C----
Q psy9904 289 -----EDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQT---LNQHMANS-----QNPE---------Q---- 342 (592)
Q Consensus 289 -----~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~---l~~~~~~~-----~~~~---------~---- 342 (592)
..+.+..+++|+++++.++|..|.||+.++|++++++.... +.+..... ..|. +
T Consensus 655 ~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l 734 (1023)
T 4hat_C 655 LLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKL 734 (1023)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHH
Confidence 12335789999999999999999999999999988754322 11100000 0000 0
Q ss_pred ----C-CCCChh-----------------H-------H-HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHH----hCC
Q psy9904 343 ----F-DAPDKD-----------------F-------M-IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC----MQD 388 (592)
Q Consensus 343 ----~-~~~d~~-----------------~-------~-~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~----l~~ 388 (592)
+ ..++.+ + | ...+.+.+.++..+|..+.|.+ +.++..+..+ +++
T Consensus 735 ~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~--~~il~~vf~~Tl~mi~~ 812 (1023)
T 4hat_C 735 VETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGV--ILILQSVFECTLDMINK 812 (1023)
T ss_dssp HHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHH--HHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHhc
Confidence 0 000000 0 0 2467788888999988887777 5677666544 332
Q ss_pred ---CChHHHHHHHHHHHHHHHHchhhhhh----hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc----h-----
Q psy9904 389 ---PMPEVRQSSFALLGDLTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE----D----- 452 (592)
Q Consensus 389 ---~~~~vR~~a~~~l~~la~~~~~~~~~----~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~----~----- 452 (592)
..|+.|..-|.++..+..+|+..+.. .+..++..++-+++.++.++...++..+-++..+... .
T Consensus 813 ~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f 892 (1023)
T 4hat_C 813 DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEF 892 (1023)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 57999999999999999999887654 4455666667778889999999888888777654431 1
Q ss_pred hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh--CCCchHhHhh-h-cccCCCchHhHHHHHHHHHHHh-hCc
Q psy9904 453 MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYV--CPHDVAPLCS-S-LRNIRDNEEKDSAFRGMCAMIT-VNP 527 (592)
Q Consensus 453 ~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~--~~~~~~p~~~-~-L~~~~d~~Ek~~a~~~l~~li~-~~p 527 (592)
++.|+..++..+..++.++.- ...-..-+..+.+|... .+....|... . .+.-..+ +.-.-.-+..++. .=|
T Consensus 893 ~~~~~~~~~~~~~~v~td~~h-~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~l~~~fp 969 (1023)
T 4hat_C 893 HKNYFFIFVSETFFVLTDSDH-KSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSN--QVYLSQYLANMLSNAFP 969 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSSSC-GGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCH--HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhCchh-hhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCch--HHHHHHHHHHHHHHhCC
Confidence 346777788888888876553 33333334445544321 1111112100 0 0100112 2222233444443 223
Q ss_pred hhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccC
Q psy9904 528 GGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVG 567 (592)
Q Consensus 528 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~ 567 (592)
+.-...+..|+..+-+........+..++.++..+|+--|
T Consensus 970 ~~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke~~~ 1009 (1023)
T 4hat_C 970 HLTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKEVGG 1009 (1023)
T ss_dssp TSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSSC
T ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHhhcC
Confidence 2222334455555554433445677777777777776434
No 15
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.91 E-value=4e-22 Score=234.51 Aligned_cols=397 Identities=15% Similarity=0.274 Sum_probs=289.5
Q ss_pred cccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc--CCChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHHh
Q psy9904 70 LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF--HHDWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLITC 146 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~--s~~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~~ 146 (592)
...|+.|+++..+|+.++...|..+++.+++.+.+.++ +.+|+.|+|+++++|++++++..... ++++++++.+...
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l 503 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence 34589999999999999988888999999999999886 46899999999999999998876544 5689999998875
Q ss_pred c-----cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhh
Q psy9904 147 L-----SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT 221 (592)
Q Consensus 147 L-----~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~ 221 (592)
. +|+++.||.++||++|+|++|+.. +.++++++++.++..+ .|++..|+..||++
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l------------------~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFM------------------HETHEGVQDMACDT 563 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHT------------------TSSCHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHH
Confidence 4 268899999999999999999875 3567877777766654 55567899999999
Q ss_pred hhhhhhhhccC-------CcccchHHHHHhh---------hhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhh
Q psy9904 222 LSRYSHWVVSQ-------PHDSYLKPLMTEH---------KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285 (592)
Q Consensus 222 L~~~a~~~~~~-------~~~~y~~~~~~~~---------~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~ 285 (592)
+.++++..+.. ...||+.++++.. ++...+|+|++.++...+..-...+|+..+|+++++.|+.
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~ 643 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDT 643 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765421 2248888887642 2345789999999988873111248999999999988864
Q ss_pred ccc------C---C----ccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH---HHHHHhh-------------
Q psy9904 286 LKD------E---D----KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQT---LNQHMAN------------- 336 (592)
Q Consensus 286 ~~d------~---~----~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~---l~~~~~~------------- 336 (592)
+.. + + +.+..+++|++.++.++|..|.||+..++..++.++... ++.....
T Consensus 644 ~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 723 (1049)
T 3m1i_C 644 IVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRG 723 (1049)
T ss_dssp HHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHH
T ss_pred HHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHH
Confidence 311 0 1 123467899999999999999999999988877544321 1100000
Q ss_pred ---------------cCCCCCCC-------CCC-----hhHH--------HHHHHHHHHHHhhhhhhhHhhhccCchHHH
Q psy9904 337 ---------------SQNPEQFD-------APD-----KDFM--------IVALDLLSGLAEGLDMHIDSLVSNSNIMHL 381 (592)
Q Consensus 337 ---------------~~~~~~~~-------~~d-----~~~~--------~~ald~l~~l~~~lg~~~~~~~~~~~l~~~ 381 (592)
..+....+ .+- .++. ..++++++.++..+|.++.||+ +.+++.
T Consensus 724 ~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l--~~i~~~ 801 (1049)
T 3m1i_C 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGV--ILILQS 801 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhH--HHHHHH
Confidence 00000000 000 0000 1278899999999999999999 678888
Q ss_pred HHHHh-----C--CCChHHHHHHHHHHHHHHHHchhhhhh----hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 382 LYQCM-----Q--DPMPEVRQSSFALLGDLTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 382 l~~~l-----~--~~~~~vR~~a~~~l~~la~~~~~~~~~----~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
+..+. + +..+++|++.|.++++++++++..+.+ .+..++...+.+++..+..+...++..+-++....+
T Consensus 802 l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 802 VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 77774 2 357999999999999999999987754 245677777778888888898888888888665432
Q ss_pred ---c-h-----hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 451 ---E-D-----MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 451 ---~-~-----~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
+ . +..|+..++..++..+.... +++-.+..+..+.++.
T Consensus 882 ~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~-h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 882 RMGNVPFANEFHKNYFFIFVSETFFVLTDSD-HKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHSTT-CGGGHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHhcch-HhhhHHHHHHHHHHHH
Confidence 1 1 33456677777777776543 4555566666777664
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.86 E-value=7.3e-19 Score=202.37 Aligned_cols=394 Identities=15% Similarity=0.248 Sum_probs=285.0
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhchhc-hhhhHhhHHHHHHHhccC
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFH--HDWEIKESGILALGAIAEGCMNG-MVPHLNELVPFLITCLSD 149 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s--~~~~~R~aa~~aLg~iaeg~~~~-i~~~l~~lvp~l~~~L~D 149 (592)
-+++++-..+|..++...+++.+..+++.+.+.+.+ .+|..++|+++|+|+|+....+. =.++++++++.|+.+...
T Consensus 453 ~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~ 532 (1073)
T 3gjx_A 453 INLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ 532 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc
Confidence 357788888998888666678888899988877654 46999999999999999433333 348999999999988854
Q ss_pred C-----hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 150 K-----KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 150 ~-----~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
+ ++.||..+||++|+|++|+.. +.+|+++++..|+..+ .+.+..|+..||.|+.+
T Consensus 533 ~~~kd~k~~vas~i~~vlgrY~~wl~~--h~~~L~~vl~~L~~~m------------------~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 533 KRGKDNKAIIASNIMYIVGQYPRFLRA--HWKFLKTVVNKLFEFM------------------HETHDGVQDMACDTFIK 592 (1073)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHT------------------TCCSTTHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHhhhHHHHHh--CHHHHHHHHHHHHHHH------------------hcCCHHHHHHHHHHHHH
Confidence 4 688999999999999999975 6789999998888766 33356677888899888
Q ss_pred hhhhhccC-------CcccchHHHHHh---------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhccc
Q psy9904 225 YSHWVVSQ-------PHDSYLKPLMTE---------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKD 288 (592)
Q Consensus 225 ~a~~~~~~-------~~~~y~~~~~~~---------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d 288 (592)
+++.++.. ...||+.+++.. .++...+|+++|+++.+++.+..++.|++.+|+++.+.|+.+.+
T Consensus 593 i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 593 IAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp HHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88776532 235777777642 35667999999999999998765568999999999999976532
Q ss_pred -----------CC--ccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH---HHHHHHHhh----------------
Q psy9904 289 -----------ED--KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIE---QTLNQHMAN---------------- 336 (592)
Q Consensus 289 -----------~~--~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~---~~l~~~~~~---------------- 336 (592)
.+ +++..+++|..++|.++|..|.|++.++|+.++.+-. +.+.+....
T Consensus 673 ~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ 752 (1073)
T 3gjx_A 673 QATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRT 752 (1073)
T ss_dssp HHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHH
T ss_pred HhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHH
Confidence 11 3357899999999999999999999999887765422 222111100
Q ss_pred ------------cCCCCC-------C-----CCCChhHH--------HHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH
Q psy9904 337 ------------SQNPEQ-------F-----DAPDKDFM--------IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ 384 (592)
Q Consensus 337 ------------~~~~~~-------~-----~~~d~~~~--------~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~ 384 (592)
....++ . +.--.++. ...+.+++.++..+|..+.|.+ +.+++.+..
T Consensus 753 ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~--~~il~~vf~ 830 (1073)
T 3gjx_A 753 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI--PQIFDAVFE 830 (1073)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHH
Confidence 000000 0 00000111 2457788899999999888888 677777655
Q ss_pred H----hC---CCChHHHHHHHHHHHHHHHHchhhhhh----hhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc--
Q psy9904 385 C----MQ---DPMPEVRQSSFALLGDLTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-- 451 (592)
Q Consensus 385 ~----l~---~~~~~vR~~a~~~l~~la~~~~~~~~~----~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-- 451 (592)
| ++ ...|+.|..-|.++..+..+|+..+.. .+..++..++-+++.+..++...+...+-++..+...
T Consensus 831 ~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~ 910 (1073)
T 3gjx_A 831 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE 910 (1073)
T ss_dssp HHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcCh
Confidence 5 33 357999999999999999999886654 3345667777778888999999888888887655431
Q ss_pred -----hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhh
Q psy9904 452 -----DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 452 -----~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~ 489 (592)
=++.|+-.++..+..++.++.- .+.-..-+..+.+|.
T Consensus 911 ~~~~~F~~~~~~~~~~~i~~v~td~~h-~~~f~~q~~il~~l~ 952 (1073)
T 3gjx_A 911 AAAQSFYQTYFCDILQHIFSVVTDTSH-TAGLTMHASILAYMF 952 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchH-hhhhhHHHHHHHHHH
Confidence 1456777788888888877653 333333334444443
No 17
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.86 E-value=3e-20 Score=214.76 Aligned_cols=386 Identities=13% Similarity=0.176 Sum_probs=258.5
Q ss_pred CCCccccchHHHHHHHHHHHHHhhhchhhhH----hHHHHHHHhhc---CCChhHHHHHHHHHHHHHhhchhc------h
Q psy9904 66 DDSSLSDWNLRKCSAAALDVLANVFREELLP----VLLPILKETLF---HHDWEIKESGILALGAIAEGCMNG------M 132 (592)
Q Consensus 66 d~~~~~~w~~Rk~aa~~L~~la~~~~~~vl~----~ll~~l~~~l~---s~~~~~R~aa~~aLg~iaeg~~~~------i 132 (592)
|++...+ .||..+..++.++...++.+++ .+.+.+.+.+. +.+|+.+|||+++|++++|||... .
T Consensus 407 d~~~F~e--~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~ 484 (980)
T 3ibv_A 407 EEAEFQE--MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEV 484 (980)
T ss_dssp THHHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSS
T ss_pred HHHHHHH--HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcc
Confidence 3344444 8999998888888877777777 77777777763 467999999999999999998742 2
Q ss_pred hhhHhhHHHHHHHhcc-----CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHc--cccCCccchhhhHHHHHH
Q psy9904 133 VPHLNELVPFLITCLS-----DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLG--CMNGMVPHLNELVPFLIT 205 (592)
Q Consensus 133 ~~~l~~lvp~l~~~L~-----D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~--~l~~~vq~l~~l~p~l~~ 205 (592)
.++++.+++++...++ +++|+||.++||++|||++|+.. +.+|++++++.++. .+
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~--~~~~l~~~L~~ll~~~gl---------------- 546 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY--ESAAIPALIEYFVGPRGI---------------- 546 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT--CCTTHHHHHHHHTSTTTT----------------
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHhccccc----------------
Confidence 3678899999999876 89999999999999999999975 56899999999988 66
Q ss_pred hcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhh------------------------------hhHHHHHHHH
Q psy9904 206 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEH------------------------------KNLLILYDAI 255 (592)
Q Consensus 206 il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~------------------------------~~l~~~~dai 255 (592)
.+++..|+..||.++.++++...+ ...||+.++++.. .+...+|+++
T Consensus 547 --~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eai 623 (980)
T 3ibv_A 547 --HNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETV 623 (980)
T ss_dssp --TCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHH
T ss_pred --cCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHH
Confidence 222344555666666666655543 2345555544321 1345799999
Q ss_pred HHHHHHhcc-cCCChhhHhhhhHHHHHHHhhcccCC----ccc---hHHHHHHHHHHHHHhh---ccccccHHHHHHHHH
Q psy9904 256 GTLADSVGH-HLNKPEYISLLMPPLIQKWNILKDED----KDL---FPLLECLSSVATALQA---GFLPYCEPVYRRCVS 324 (592)
Q Consensus 256 ~~la~~~g~-~~~~~~y~~~lmp~L~~~~~~~~d~~----~~~---~~~~e~l~~ia~~~g~---~f~py~~~v~~~~~~ 324 (592)
|.+....+. .-.+..|++.+++++++.|+..-... .+. ...+-|++.+++.+.. ...| ...+|..+++
T Consensus 624 g~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~ 702 (980)
T 3ibv_A 624 GVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASD 702 (980)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHH
Confidence 999988763 11234899999999999876432111 111 2345566666664321 1234 4456777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHH
Q psy9904 325 LIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDL 404 (592)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~l 404 (592)
.+...+... ..+..+|..+.-++..++..+|.++.|++ ++++..++..++ ..--...+.++|.+
T Consensus 703 ~il~~l~~~-----------~~~~~irea~~~~~~r~i~~lg~~~~p~l--p~~i~~ll~~~~---~~e~~~fL~l~~ql 766 (980)
T 3ibv_A 703 EIFLILDRM-----------GFNEDIRGAVRFTSGRIINVVGPDMLPKV--PQLISILLNSID---MNELVDVLSFISQL 766 (980)
T ss_dssp HHHHHHHHS-----------CCSHHHHHHHHHHHHHHTTTTHHHHTTTH--HHHHHHHHHHCC---TTTHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCcHHHHHHHHHHHHHHHHHccHhHHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 777777542 12467888999999999999999999999 788888875544 33356788999999
Q ss_pred HHHchhhhhhhhhhHHHHHHhc----cCCCC---hh------HHHHHHHHHHHHHHh-cCchh-----hhhHHHHHHHHH
Q psy9904 405 TKACFSHVHPCISDFMPILGQN----LNPDL---IS------VCNNATWAIGEISVK-LGEDM-----RRYVPMVINQLI 465 (592)
Q Consensus 405 a~~~~~~~~~~l~~llp~l~~~----l~~~~---~~------v~~~A~~~Lg~ia~~-~~~~~-----~p~~~~il~~L~ 465 (592)
+..++.++.+.+..+++.++.. +..+. .. ++..-..-+-.+..+ +++-+ +++++.++..++
T Consensus 767 i~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~ 846 (980)
T 3ibv_A 767 IHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSIL 846 (980)
T ss_dssp HHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHH
Confidence 9999999999998888777654 33211 11 222323333333332 22211 345666666666
Q ss_pred HHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 466 IIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 466 ~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
..-.+ ..+..+...|...+.++....
T Consensus 847 ~~a~~-~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 847 HFANL-VGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp HHC------CHHHHHHHHHHHHHHHC-
T ss_pred HHhcc-CCChHHHHHHHHHHHHHHHHH
Confidence 43222 112455566666667766543
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.86 E-value=7.3e-20 Score=195.33 Aligned_cols=327 Identities=17% Similarity=0.191 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHhhhc-hhhhHhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhc-hhchhhhHhhHHHHHHHhccCC--
Q psy9904 77 KCSAAALDVLANVFR-EELLPVLLPILKETLFHH--DWEIKESGILALGAIAEGC-MNGMVPHLNELVPFLITCLSDK-- 150 (592)
Q Consensus 77 k~aa~~L~~la~~~~-~~vl~~ll~~l~~~l~s~--~~~~R~aa~~aLg~iaeg~-~~~i~~~l~~lvp~l~~~L~D~-- 150 (592)
+.++.+++.++.... ...+|.++|.+.+.++++ ++.+|++|+.+|+.+++.+ ++.+.+|++.+++.+...|+|+
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 568899999998754 457899999999999998 9999999999999999977 5667789999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhc
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVV 230 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~ 230 (592)
++.||..|+++++.+.+.+.+......+. +.+++.+...+.+.+..+|..+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-----------------~~l~~~l~~~~~~~~~~vr~~~------------ 237 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESER-----------------HFIMQVVCEATQCPDTRVRVAA------------ 237 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHH-----------------HHHHHHHHHHTTCSSHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----------------HHHHHHHHHhcCCCCHHHHHHH------------
Confidence 79999999999998764332100000000 1123333334444444555443
Q ss_pred cCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHh-hhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHh
Q psy9904 231 SQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYIS-LLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQ 308 (592)
Q Consensus 231 ~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~-~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g 308 (592)
+.+++.++...+..+. +|++ .+++.++..+. +.+.++ ..+++.++.++...-
T Consensus 238 ---------------------~~~l~~l~~~~~~~~~--~~~~~~l~~~~~~~~~---~~~~~v~~~a~~~l~~~~~~~~ 291 (462)
T 1ibr_B 238 ---------------------LQNLVKIMSLYYQYME--TYMGPALFAITIEAMK---SDIDEVALQGIEFWSNVCDEEM 291 (462)
T ss_dssp ---------------------HHHHHHHHHHCGGGCT--TTTTTTHHHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHH
Confidence 4455555665655555 7888 88888776543 333333 567788888776530
Q ss_pred -----------------hccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHh
Q psy9904 309 -----------------AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDS 371 (592)
Q Consensus 309 -----------------~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~ 371 (592)
.....++.+.++.+++.+...+.. .+. +.++++...|..+.++++.++..+|..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~-----~d~-d~~~~~~~~r~~a~~~L~~l~~~~~~~~~- 364 (462)
T 1ibr_B 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK-----QDE-NDDDDDWNPCKAAGVCLMLLATCCEDDIV- 364 (462)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC-----CCS-SCCTTCCSHHHHHHHHHHHHHHHTTTTHH-
T ss_pred HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHh-----ccc-ccccccchHHHHHHHHHHHHHHhccHHHH-
Confidence 011223333333444444443321 111 11223446788999999999999985443
Q ss_pred hhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch-hhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 372 LVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF-SHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~-~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
+.+++.+...+++++..+|..++.++|.++..+. ..+.++++.++|.++..++++++.||..|+|+||.++...+
T Consensus 365 ----~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 365 ----PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp ----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999999999998776 56788999999999999999999999999999999999888
Q ss_pred chh--hhhHHHHHHHHHHHHc
Q psy9904 451 EDM--RRYVPMVINQLIIIIN 469 (592)
Q Consensus 451 ~~~--~p~~~~il~~L~~~l~ 469 (592)
..+ .+|++.+++.|+..|+
T Consensus 441 ~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp GGCCSTTTHHHHHHHHHCC--
T ss_pred cccccHHHHHHHHHHHHHHhc
Confidence 765 5899999999887664
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.81 E-value=5.5e-18 Score=180.69 Aligned_cols=341 Identities=12% Similarity=0.150 Sum_probs=247.3
Q ss_pred chHHHHHHHHHHHHHh---------------hhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHh
Q psy9904 73 WNLRKCSAAALDVLAN---------------VFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLN 137 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~---------------~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~ 137 (592)
..+|..|+..|..+.. .++++....+...+.+.+.++++.+ ..+..+++.|+..... ..+.+
T Consensus 51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~--~~~w~ 127 (462)
T 1ibr_B 51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP--VNQWP 127 (462)
T ss_dssp HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG--GTCCT
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc--ccccH
Confidence 5699999999998863 2344555666676777788888888 8899999999976532 13578
Q ss_pred hHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCch--hhH
Q psy9904 138 ELVPFLITCLSDK--KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDK--KAL 213 (592)
Q Consensus 138 ~lvp~l~~~L~D~--~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~--~~~ 213 (592)
+++|.++..++++ ++.+|..++.+|+.+++...+....++++ .++|.+...++|+ ...
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~------------------~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN------------------EILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH------------------HHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH------------------HHHHHHHHHhCCCCCCHH
Confidence 9999999999998 89999999999999998763222233443 3445555556666 577
Q ss_pred HHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc
Q psy9904 214 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL 293 (592)
Q Consensus 214 vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~ 293 (592)
||..++++++.+...+ .. ..... .+.+.+++.+.+.. .+.+.++
T Consensus 190 vr~~a~~~l~~~~~~~---------~~--------------------~~~~~----~~~~~l~~~l~~~~---~~~~~~v 233 (462)
T 1ibr_B 190 VKLAATNALLNSLEFT---------KA--------------------NFDKE----SERHFIMQVVCEAT---QCPDTRV 233 (462)
T ss_dssp HHHHHHHHHHHHTTTT---------HH--------------------HHTSH----HHHHHHHHHHHHHT---TCSSHHH
T ss_pred HHHHHHHHHHHHHHHH---------HH--------------------hhhhh----HHHHHHHHHHHHhc---CCCCHHH
Confidence 8888888777642111 00 00000 01122345444322 2333333
Q ss_pred -hHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhh------
Q psy9904 294 -FPLLECLSSVATALQAGFLPYCE-PVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL------ 365 (592)
Q Consensus 294 -~~~~e~l~~ia~~~g~~f~py~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~l------ 365 (592)
..+++|++.++...+..|.||++ .+++.+ ...+. +.+.+++..+++.++.++...
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~----~~~~~-------------~~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAIT----IEAMK-------------SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHH----HHHHH-------------CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHc-------------CCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999988999988 776533 33321 124677888899888887653
Q ss_pred ---------------hhhhHhhhccCchHHHHHHHhCC-------CChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHH
Q psy9904 366 ---------------DMHIDSLVSNSNIMHLLYQCMQD-------PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423 (592)
Q Consensus 366 ---------------g~~~~~~~~~~~l~~~l~~~l~~-------~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l 423 (592)
..-+.+++ +.+++.++..+.+ .+..+|..|..+|+.++..+++ ..++.++|.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l 371 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFI 371 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHH--HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHH
T ss_pred cccccccCCCccchhHHHHHHHh--hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHH
Confidence 11234455 5678888888853 2468999999999999999884 4578899999
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC
Q psy9904 424 GQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 424 ~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~ 494 (592)
...+++.++.+|..|++++|.++.... ..+.++++.++|.+++.+++++ ..|+..|++++|+++...+.
T Consensus 372 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS--VVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999987555 4578899999999999998765 88999999999999976543
No 20
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.78 E-value=3.2e-17 Score=191.66 Aligned_cols=384 Identities=12% Similarity=0.155 Sum_probs=248.0
Q ss_pred ccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC 146 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~ 146 (592)
.+|..|.+|..+++.+++++.+ ..++.+++.+.+... ++++.+|.+++.++|++++-..... .|++.++|.++..
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 6899999999999999998874 456777876655442 4689999999999999998766432 6899999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccC-CccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG-MVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~-~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
| | ++|+.+||+++.++++.+.. ...+|+++++..+...+++ .+. ...+..+..+++..
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~-~l~p~~~~ll~~l~~~l~~~~~~-----------------~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQL-QLKPYADPLLNACHASLNTGRMK-----------------NSDSVRLMFSIGKL 613 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHSTTSC-----------------HHHHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHcCCCCC-----------------hHHHHHHHHHHHHH
Confidence 9 4 78999999999999987754 2467888888877766622 111 11112222222222
Q ss_pred hhhhccCCcccch----HHHHHhh--------------hhHHHHHHHHHHHHHHhccc------------CCChhhHhhh
Q psy9904 226 SHWVVSQPHDSYL----KPLMTEH--------------KNLLILYDAIGTLADSVGHH------------LNKPEYISLL 275 (592)
Q Consensus 226 a~~~~~~~~~~y~----~~~~~~~--------------~~l~~~~dai~~la~~~g~~------------~~~~~y~~~l 275 (592)
+..++.+...+|+ .|+++.. .......+.++++...++.. .. .+|.+.+
T Consensus 614 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i 692 (971)
T 2x1g_F 614 MSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRT 692 (971)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHH
Confidence 2222111111221 1122100 11122344455555555432 12 2788999
Q ss_pred hHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHH
Q psy9904 276 MPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVA 354 (592)
Q Consensus 276 mp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~a 354 (592)
||.+...++... ++.. ...++.+++.++..+|.+|.||++++++. +...+.. . .. .++
T Consensus 693 ~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~----l~~~~~~-------~-------~~--~~~ 751 (971)
T 2x1g_F 693 MPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF----IVASFQT-------R-------CC--APT 751 (971)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH----HHHHCC----------------CC--HHH
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH----HHHHHhc-------C-------Cc--hHH
Confidence 999888765422 1223 35788899999999999999998876543 3333211 0 11 457
Q ss_pred HHHHHHHHhhhhhh------hHhhhccCchHHHHHHHhCC-------CChHHHHHHHHHHHHHHHHchhhhh--hh-hhh
Q psy9904 355 LDLLSGLAEGLDMH------IDSLVSNSNIMHLLYQCMQD-------PMPEVRQSSFALLGDLTKACFSHVH--PC-ISD 418 (592)
Q Consensus 355 ld~l~~l~~~lg~~------~~~~~~~~~l~~~l~~~l~~-------~~~~vR~~a~~~l~~la~~~~~~~~--~~-l~~ 418 (592)
+++++.++..+|.+ +.+++ ..+...++..+.. ..++++++.|.+++++.++++..+. |. ++.
T Consensus 752 l~l~~~~i~~~~~~~~~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~ 829 (971)
T 2x1g_F 752 LEISKTAIVMFFKDEGCKPLMQQLL--REFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDR 829 (971)
T ss_dssp HHHHHHHHTTCCC-----HHHHHHH--HHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHH--HHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHH
Confidence 89999999988863 33333 2334444444433 3689999999999999999998876 77 899
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHhc--CchhhhhHHHHHHHHHHH----HcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 419 FMPILGQNLNPDLISVCNNATWAIGEISVKL--GEDMRRYVPMVINQLIII----INRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 419 llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~--~~~~~p~~~~il~~L~~~----l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
+++..+.++..++..+...++..+..+.... ...+.+++....+.|+.. +. ...+++..++++..+++++..+
T Consensus 830 i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~-~~~~~s~~~~~a~~l~~l~~~~ 908 (971)
T 2x1g_F 830 LVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVG-YLTPRSQVDKFADILLAMNRKY 908 (971)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-TTSCGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhc-ccCChhHHHHHHHHHHHHHHHC
Confidence 9999999988777666666666666654332 233555555444444433 32 2345788899999999999999
Q ss_pred CCchHhHhh
Q psy9904 493 PHDVAPLCS 501 (592)
Q Consensus 493 ~~~~~p~~~ 501 (592)
|+.+.+|+.
T Consensus 909 ~~~~~~~l~ 917 (971)
T 2x1g_F 909 AAEMAVWMK 917 (971)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 988888985
No 21
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.74 E-value=3.8e-15 Score=173.62 Aligned_cols=342 Identities=9% Similarity=0.047 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHhhcC--CCcc-----c
Q psy9904 111 WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS------DKKALVRAITCWTLSRYSHWVVSQ--PHDS-----Y 177 (592)
Q Consensus 111 ~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~------D~~~~VR~~a~~aL~~l~~~~~~~--~~~~-----~ 177 (592)
|..|.+|...|..++...++ ..++.+++++.+.|. +++|+.|.+|..++|.+++..... .... .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cCcHHHHHHHHHHHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 56788999999999988774 346667777777776 678999999999999998653210 0010 1
Q ss_pred hHHHHHHHHccccCCccchhhhHHHHHHhcCch---hhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh------hhh-
Q psy9904 178 LKPLMTEMLGCMNGMVPHLNELVPFLITCLSDK---KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE------HKN- 247 (592)
Q Consensus 178 l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~---~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~------~~~- 247 (592)
+.+++ ..++.+.+.++ ++.+|..+||++++|+.++.+ .++.+++.. ..+
T Consensus 452 l~~~l-----------------~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 452 VVDFF-----------------TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEY 510 (960)
T ss_dssp HHHHH-----------------HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCH
T ss_pred HHHHH-----------------HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCh
Confidence 21111 11222233455 889999999999999988632 344444431 112
Q ss_pred --HHHHHHHHHHHHHHh-----------cccCCChhhHhhhhHHHHHHHhhcc---cCCccchHHHHHHHHHHHHHhhcc
Q psy9904 248 --LLILYDAIGTLADSV-----------GHHLNKPEYISLLMPPLIQKWNILK---DEDKDLFPLLECLSSVATALQAGF 311 (592)
Q Consensus 248 --l~~~~dai~~la~~~-----------g~~~~~~~y~~~lmp~L~~~~~~~~---d~~~~~~~~~e~l~~ia~~~g~~f 311 (592)
...+..|+..+++.. ...+. ||++.+|+.|+..++... .+..+...+++|++.++.+.++++
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~ 588 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI 588 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh
Confidence 235566777776632 23344 899999999998776421 011134579999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCCCC
Q psy9904 312 LPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQDPM 390 (592)
Q Consensus 312 ~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~~~ 390 (592)
.||++.++++++..+.... ++ .+++.++..++++++.++++.+. .+.++. +.+++.+...++...
T Consensus 589 ~p~~~~l~~~L~~~l~~~~-------~~-----~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~ 654 (960)
T 1wa5_C 589 QPLFPQLLAQFIEIVTIMA-------KN-----PSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDI 654 (960)
T ss_dssp GGGHHHHHHHHHHHHHHHT-------TS-----CCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHH-------hC-----CCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhh
Confidence 9999998877776655432 12 23577778899999999998664 455665 578999999888777
Q ss_pred hHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHH--hccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Q psy9904 391 PEVRQSSFALLGDLTKACFSHVHPCISDFMPILG--QNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468 (592)
Q Consensus 391 ~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~--~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l 468 (592)
.++...++.+++.+.+.. ..+.+|+..++|.+. ..++... .....+-.|+.+....++.+.. ++.++..+..++
T Consensus 655 ~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~ 730 (960)
T 1wa5_C 655 QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLI 730 (960)
T ss_dssp TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHh
Confidence 789999999999999888 778899999999999 7665542 3345555666665555444433 355565555655
Q ss_pred cCCCCCchHHHHHHHHHHHhhhhCCCc-hHhHh
Q psy9904 469 NRPNTPKTLLENTAITIGRLGYVCPHD-VAPLC 500 (592)
Q Consensus 469 ~~~~~~~~v~~na~~~lgrl~~~~~~~-~~p~~ 500 (592)
.... ...+++..+|.++..++.. +.||+
T Consensus 731 ~~~~----~~~~a~~ll~~i~~~~~~~~~~~yl 759 (960)
T 1wa5_C 731 ASKA----YEVHGFDLLEHIMLLIDMNRLRPYI 759 (960)
T ss_dssp TCTT----THHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred CCCc----ccchHHHHHHHHHHHCCHHHHHHHH
Confidence 5432 2478999999999998877 77744
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.74 E-value=9.9e-17 Score=174.76 Aligned_cols=346 Identities=16% Similarity=0.199 Sum_probs=239.6
Q ss_pred cchHHHHHHHHHHHHHhhhc-h---hhh-HhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHH
Q psy9904 72 DWNLRKCSAAALDVLANVFR-E---ELL-PVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLI 144 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~-~---~vl-~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~ 144 (592)
++.+|..|+.+|..+....+ + .++ ..++|.+.++++++ ++.+|..|+.+|+.++.+..+...... ..++|.|+
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 57899999999998876432 1 222 35778888888887 899999999999999987654322221 57899999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
..|+++++.||..|+|+|++++.... .+-..++ . ..++|.|..++.+.+..++..++|+|++
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~-----~~~~~~~----~---------~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDST-----DYRDYVL----Q---------CNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCH-----HHHHHHH----H---------TTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCc-----cchHHHH----H---------cCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 99999999999999999999985321 1111111 1 3466777777777677788888888887
Q ss_pred hhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHH
Q psy9904 225 YSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSV 303 (592)
Q Consensus 225 ~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~i 303 (592)
++.... +.. .......++|.|+..+. +.+..+ ..++.+|+.+
T Consensus 242 L~~~~~---------------------------------~~~-~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 242 LCRGKK---------------------------------PQP-DWSVVSQALPTLAKLIY---SMDTETLVDACWAISYL 284 (530)
T ss_dssp HHCCSS---------------------------------SCC-CHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHH
T ss_pred HhCCCC---------------------------------CCC-cHHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 642110 000 01344566777777543 333333 5677788777
Q ss_pred HHHHhhccccccHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHH
Q psy9904 304 ATALQAGFLPYCEPVYR-RCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL 382 (592)
Q Consensus 304 a~~~g~~f~py~~~v~~-~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l 382 (592)
+....... ..++. .+++.|...+. .++...+..++.+|+.++.+.+.....++. ..+++.+
T Consensus 285 ~~~~~~~~----~~~~~~~~v~~Lv~lL~-------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L 346 (530)
T 1wa5_B 285 SDGPQEAI----QAVIDVRIPKRLVELLS-------------HESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPAL 346 (530)
T ss_dssp HSSCHHHH----HHHHHTTCHHHHHHGGG-------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHH
T ss_pred hCCCHHHH----HHHHhcCcHHHHHHHHC-------------CCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHH
Confidence 64322111 11111 12233333321 124677888999999998765544444443 5789999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc--hhhhhHH-
Q psy9904 383 YQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE--DMRRYVP- 458 (592)
Q Consensus 383 ~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~--~~~p~~~- 458 (592)
...+++.+..+|..|+.+|+.++.........++ ..++|.|+..+.+.++.++..|+|+|+.++...+. ....++-
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999999999999986666555555 36888888888888899999999999999976543 3333443
Q ss_pred -HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 459 -MVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 459 -~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
.+++.|+.++..++ ..++.+++++++.+....
T Consensus 427 ~~~l~~L~~ll~~~~--~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 427 QGCIKPLCDLLEIAD--NRIIEVTLDALENILKMG 459 (530)
T ss_dssp TTCHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhh
Confidence 48899999998764 789999999999987643
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.73 E-value=4.8e-16 Score=169.17 Aligned_cols=392 Identities=15% Similarity=0.219 Sum_probs=256.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhh-HhhHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPH-LNELVPFLITCLSDKK-ALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~-l~~lvp~l~~~L~D~~-~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
+|.+.+.++++++..|..|+.+|+.++.+.. +..... -..++|.|++.|++++ +.||..|+|+|++++..-.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~----- 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS----- 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-----
Confidence 4555566688899999999999999987654 322222 2468999999999987 9999999999999986321
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHH
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAI 255 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai 255 (592)
.....++. ...+|.|..++.+++..++..|+|+|++++... ...+ +.
T Consensus 151 ~~~~~~~~-------------~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~----------------~~~~---~~- 197 (528)
T 4b8j_A 151 ENTKVVID-------------HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS----------------PKCR---DL- 197 (528)
T ss_dssp HHHHHHHH-------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC----------------HHHH---HH-
T ss_pred HHHHHHHh-------------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----------------hhhH---HH-
Confidence 11111111 356788888888888889999999998874210 0000 00
Q ss_pred HHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH
Q psy9904 256 GTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHM 334 (592)
Q Consensus 256 ~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~ 334 (592)
+ .-..++|+|++.+. .+.+..+ ..+..+|+.++..... . ...+...+++.|...+.
T Consensus 198 --i------------~~~g~l~~Ll~lL~--~~~~~~v~~~a~~~L~~L~~~~~~--~--~~~~~~~~l~~L~~lL~--- 254 (528)
T 4b8j_A 198 --V------------LANGALLPLLAQLN--EHTKLSMLRNATWTLSNFCRGKPQ--P--SFEQTRPALPALARLIH--- 254 (528)
T ss_dssp --H------------HHTTCHHHHHHTCC--TTCCHHHHHHHHHHHHHHHCSSSC--C--CHHHHTTHHHHHHHHTT---
T ss_pred --H------------HHCCcHHHHHHHHh--cCCCHHHHHHHHHHHHHHHcCCCC--C--cHHHHHHHHHHHHHHHC---
Confidence 0 00134677776542 1222222 5667777777653211 1 11222334444444431
Q ss_pred hhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhh
Q psy9904 335 ANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHP 414 (592)
Q Consensus 335 ~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~ 414 (592)
.++.+.+..++.+|+.++..........+. ..+++.++.++.+.++.+|..|+.+|+.++.........
T Consensus 255 ----------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 255 ----------SNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp ----------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 235677888899999988665444444443 568999999999999999999999999999765554444
Q ss_pred hh-hhHHHHHHhccCCC-ChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 415 CI-SDFMPILGQNLNPD-LISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 415 ~l-~~llp~l~~~l~~~-~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
.+ ..++|.|+..+.+. ...++..|+|+|+.++..........+. .+++.|+.++.+.+ ..++.+|+++|+.++..
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE--FDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHcC
Confidence 33 35788888888877 8999999999999998643333333332 67888999988664 78999999999999876
Q ss_pred C-CCc---------hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchhh-------hhhHHHH-----HHHhhcc-CCCc
Q psy9904 492 C-PHD---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV-------VQEFIFF-----CDAVASW-STPK 548 (592)
Q Consensus 492 ~-~~~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~-------~~~~~~~-----~~~i~~~-~~~~ 548 (592)
. ++. +.+++..|.. .+..-+..++.+|+.++..++..- .+....+ +..+... ..++
T Consensus 402 ~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 480 (528)
T 4b8j_A 402 GSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN 480 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence 3 322 2224454433 344447778999999987654310 0111111 1222222 2467
Q ss_pred hhHHHHHHHHHHHHHhc
Q psy9904 549 EDLKEMFHKILHGFRTQ 565 (592)
Q Consensus 549 ~~~~~~~~~ll~~~~~~ 565 (592)
++++.....++..|-..
T Consensus 481 ~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 481 NEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 78899999999887654
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.73 E-value=3e-16 Score=170.87 Aligned_cols=346 Identities=17% Similarity=0.216 Sum_probs=237.6
Q ss_pred ccchHHHHHHHHHHHHHhhhc-h---hh-hHhHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFR-E---EL-LPVLLPILKETLFHHD-WEIKESGILALGAIAEGCMNGMVPHL-NELVPFL 143 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~-~---~v-l~~ll~~l~~~l~s~~-~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l 143 (592)
.++.+|..|+.+|..++...+ + .+ -..++|.+.+.+++++ +.+|..|+.+|+.++.+..+.....+ ...+|.|
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L 165 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHH
Confidence 357899999999999976543 1 22 2346777777778876 99999999999999997664333222 3699999
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhc-CchhhHHHHHHHhhh
Q psy9904 144 ITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCL-SDKKALVRAITCWTL 222 (592)
Q Consensus 144 ~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il-~d~~~~vr~~a~~~L 222 (592)
+..|+++++.||..|+|+|++++..-.. .-..++ . ...+|.|..++ .+.+..++..++|+|
T Consensus 166 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~-----~~~~i~----~---------~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 166 VKLLGSSSDDVREQAVWALGNVAGDSPK-----CRDLVL----A---------NGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHTCHH-----HHHHHH----H---------TTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCChh-----hHHHHH----H---------CCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999863211 111111 1 23556666666 555677888888888
Q ss_pred hhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHH
Q psy9904 223 SRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLS 301 (592)
Q Consensus 223 ~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~ 301 (592)
.+++...+ . ........++|.|+..+. +.+..+ ..++.+|+
T Consensus 228 ~~L~~~~~----------------------------------~-~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 228 SNFCRGKP----------------------------------Q-PSFEQTRPALPALARLIH---SNDEEVLTDACWALS 269 (528)
T ss_dssp HHHHCSSS----------------------------------C-CCHHHHTTHHHHHHHHTT---CCCHHHHHHHHHHHH
T ss_pred HHHHcCCC----------------------------------C-CcHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 87643110 0 001234556677776543 333333 56677777
Q ss_pred HHHHHHhhccccccHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHH
Q psy9904 302 SVATALQAGFLPYCEPVYR-RCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMH 380 (592)
Q Consensus 302 ~ia~~~g~~f~py~~~v~~-~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~ 380 (592)
.++....... ..++. .+++.+...+. .++...+..++.+|+.++.+........+. ..+++
T Consensus 270 ~l~~~~~~~~----~~~~~~g~v~~Lv~lL~-------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~ 331 (528)
T 4b8j_A 270 YLSDGTNDKI----QAVIEAGVCPRLVELLL-------------HPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALP 331 (528)
T ss_dssp HHTSSCHHHH----HHHHHTTCHHHHHHHTT-------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHH
T ss_pred HHHcCCHHHH----HHHHHcCHHHHHHHHHc-------------CCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHH
Confidence 7663211111 11110 12233333331 124567788999999998765555545553 57899
Q ss_pred HHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-
Q psy9904 381 LLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV- 457 (592)
Q Consensus 381 ~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~- 457 (592)
.+...+++. ++.+|..|+.+|+.++..........+. .++|.|++.+.+.++.++..|+|+|+.++.........++
T Consensus 332 ~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (528)
T 4b8j_A 332 CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV 411 (528)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999988 8999999999999999765554444333 6889998888888899999999999999987555555555
Q ss_pred -HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 458 -PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 458 -~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
..+++.|+.++..++ ..++.+++++|+.|....
T Consensus 412 ~~~~i~~L~~lL~~~d--~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPD--IRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHH
Confidence 368899999998765 789999999999997644
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.72 E-value=9.8e-16 Score=162.80 Aligned_cols=345 Identities=14% Similarity=0.165 Sum_probs=236.4
Q ss_pred chHHHHHHHHHHHHHhhh-c---hhhhH--hHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHH
Q psy9904 73 WNLRKCSAAALDVLANVF-R---EELLP--VLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLI 144 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~-~---~~vl~--~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~ 144 (592)
..+|..|+.+|..+.... . ..++. .++|.+.+.++++ ++.+|..|+.+|+.++.+..+...... ..++|.++
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 113 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHH
Confidence 348999999999876522 1 22332 5788888888888 899999999999999987654333222 57999999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCc-hhhHHHHHHHhhhh
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSD-KKALVRAITCWTLS 223 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d-~~~~vr~~a~~~L~ 223 (592)
+.|+++++.||..|+|+|++++..... +-..++ . ..++|.+..++.+ .+..+|..++++|+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~-----~~~~~~----~---------~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTM-----CRDYVL----D---------CNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHH----H---------TTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHH-----HHHHHH----H---------CCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999863211 111111 1 3456777777764 56778888888887
Q ss_pred hhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHH
Q psy9904 224 RYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSS 302 (592)
Q Consensus 224 ~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ 302 (592)
+++... ++... ...+..++|.|++.+. +++..+ ..+..+++.
T Consensus 176 ~l~~~~---------------------------------~~~~~-~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 176 NLCRGK---------------------------------SPPPE-FAKVSPCLNVLSWLLF---VSDTDVLADACWALSY 218 (450)
T ss_dssp HHHCCS---------------------------------SSCCC-GGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHH
T ss_pred HHhCCC---------------------------------CCCCC-HHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH
Confidence 764211 01111 1344667788877653 233332 456677777
Q ss_pred HHHHHhhccccccHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHH
Q psy9904 303 VATALQAGFLPYCEPVY-RRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHL 381 (592)
Q Consensus 303 ia~~~g~~f~py~~~v~-~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~ 381 (592)
++...... ...+. ..+++.+...+. .++.+.+..++.+++.++..........+. ..+++.
T Consensus 219 l~~~~~~~----~~~~~~~~~i~~L~~ll~-------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~ 280 (450)
T 2jdq_A 219 LSDGPNDK----IQAVIDAGVCRRLVELLM-------------HNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQS 280 (450)
T ss_dssp HTSSSHHH----HHHHHHTTTHHHHHHHTT-------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHH
T ss_pred HHCCCcHH----HHHHHHcCcHHHHHHHHC-------------CCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHH
Confidence 65421111 01110 012233333321 234677888999999998765544333442 468999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC-chhhhhHH-
Q psy9904 382 LYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYVP- 458 (592)
Q Consensus 382 l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~-~~~~p~~~- 458 (592)
+...++++++.+|..|+.+|+.++..........+ ..++|.+++.++++++.+|..|+|+|+.++.... +.....+.
T Consensus 281 L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~ 360 (450)
T 2jdq_A 281 LLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360 (450)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 99999999999999999999999976655555555 3788999988888889999999999999987643 33333333
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 459 MVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 459 ~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
.+++.|+.+++.++ ..++.+++++++.+....
T Consensus 361 ~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 361 GCIKPLCDLLTVMD--SKIVQVALNGLENILRLG 392 (450)
T ss_dssp TCHHHHHHGGGSSC--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhc
Confidence 58899999998764 789999999999998644
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=3.8e-15 Score=164.16 Aligned_cols=420 Identities=11% Similarity=0.102 Sum_probs=246.3
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
..+|..|..+|+.+ ..+++.+.++|.+.+.+.|+++.+|+.|+.+++.+....++.+.. +.++|.+.++|+|+++
T Consensus 100 ~~ir~~AL~~L~~i---~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~ 174 (591)
T 2vgl_B 100 PLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNP 174 (591)
T ss_dssp HHHHHHHHHHHHTC---CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCH
T ss_pred HHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCCh
Confidence 45787766655554 356788888898999999999999999999999999876654322 4688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccC
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 232 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~ 232 (592)
.||.+|+++|+.++..-.+.......+..+..|++.+ .+.+...+......++.|+..-...
T Consensus 175 ~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l------------------~~~~~~~q~~il~~l~~l~~~~~~~ 236 (591)
T 2vgl_B 175 MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL------------------NECTEWGQIFILDCLSNYNPKDDRE 236 (591)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH------------------HHCCHHHHHHHHHHHHTSCCCSHHH
T ss_pred hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC------------------CCCCchHHHHHHHHHHHhCCCChHH
Confidence 9999999999998764321101122233333333322 1112222222222233332100000
Q ss_pred --CcccchHHHHHhhhhHHHHHHHHHHHHHHhc-----ccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHH
Q psy9904 233 --PHDSYLKPLMTEHKNLLILYDAIGTLADSVG-----HHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVA 304 (592)
Q Consensus 233 --~~~~y~~~~~~~~~~l~~~~dai~~la~~~g-----~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia 304 (592)
...+++.+.+ +..+-...+.|+.++..... ++.. ...++.+.+.|+... +.++++ +.++.+++.++
T Consensus 237 ~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~----~~d~~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 237 AQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYY-NMLLKKLAPPLVTLL----SGEPEVQYVALRNINLIV 310 (591)
T ss_dssp HHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTBSH-HHHHHHTHHHHHHHT----TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHHHH-HHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHH
Confidence 0000000000 01111233444444433210 1111 022344555555432 234444 68899999988
Q ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH
Q psy9904 305 TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ 384 (592)
Q Consensus 305 ~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~ 384 (592)
......+.++...++ + .. .++..++..+++++..++..- +. ..+++.+..
T Consensus 311 ~~~p~~~~~~~~~~~---------~------------~~-~d~~~Ir~~al~~L~~l~~~~--nv------~~iv~~L~~ 360 (591)
T 2vgl_B 311 QKRPEILKQEIKVFF---------V------------KY-NDPIYVKLEKLDIMIRLASQA--NI------AQVLAELKE 360 (591)
T ss_dssp HHCCSTTTTCTTTTS---------C------------CT-TSCHHHHHHHHHHHHHTCCSS--TH------HHHHHHHHH
T ss_pred HhChHHHHHHHHhhe---------e------------cc-CChHHHHHHHHHHHHHHCChh--hH------HHHHHHHHH
Confidence 876665655543210 0 00 123567778888888765332 22 246777778
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Q psy9904 385 CMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQL 464 (592)
Q Consensus 385 ~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L 464 (592)
.+++.+.++|+.++..++.++..++.... .+++.+++.+++....++..++.+++++....+... ..+++.|
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L 432 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAE----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY----ESIIATL 432 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC----CTTHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHH----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH----HHHHHHH
Confidence 88888999999999999999987665444 455556666666777888888889999987765432 2345556
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhhcc-cC-CCch-HhHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy9904 465 IIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLR-NI-RDNE-EKDSAFRGMCAMITVNPGGVVQEFIFFCDAV 541 (592)
Q Consensus 465 ~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L~-~~-~d~~-Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i 541 (592)
...++... ...++..++|++|+.+...++ ....+..+. .. .++. -|..++.++.++....|....+.+..++...
T Consensus 433 ~~~l~~~~-~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 433 CENLDSLD-EPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp HHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HHHHHhcc-CHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 66665422 367889999999999876543 111333332 12 2232 3778889999999888865434444444432
Q ss_pred hccCCCchhHHHHHHHHHHHH
Q psy9904 542 ASWSTPKEDLKEMFHKILHGF 562 (592)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~~ 562 (592)
. +...+.|+++.....+.-+
T Consensus 511 ~-~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 511 T-QDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp H-TTCCCHHHHHHHHHHHTTT
T ss_pred h-hcCCChHHHHHHHHHHHHH
Confidence 2 2235667877655544433
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.71 E-value=3.7e-15 Score=158.33 Aligned_cols=354 Identities=16% Similarity=0.208 Sum_probs=235.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhh-chhchhhhHh--hHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEG-CMNGMVPHLN--ELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQPH 174 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg-~~~~i~~~l~--~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~ 174 (592)
+|.+.+.++++++.+|..|+.+|+.+... ....+...+. .++|.+++.|+++ ++.||..|+|+|+.++..-.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~---- 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS---- 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH----
Confidence 55566677889999999999999998642 2233444443 6999999999998 89999999999999985211
Q ss_pred ccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHH
Q psy9904 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDA 254 (592)
Q Consensus 175 ~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~da 254 (592)
+....++ . ..++|.|..++++++..+|..++++|++++.... ..+ +.
T Consensus 98 -~~~~~~~----~---------~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-------------~~~------~~ 144 (450)
T 2jdq_A 98 -LQTRIVI----Q---------AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-------------MCR------DY 144 (450)
T ss_dssp -HHHHHHH----H---------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-------------HHH------HH
T ss_pred -HHHHHHH----h---------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-------------HHH------HH
Confidence 1111111 1 3577888888888888899999999887642100 000 00
Q ss_pred HHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHHHHHHH
Q psy9904 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAG-FLPYCEPVYRRCVSLIEQTLNQ 332 (592)
Q Consensus 255 i~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~-f~py~~~v~~~~~~~l~~~l~~ 332 (592)
+ .-..++|.|++.+.. +.+..+ ..+..+++.++...+.. -..+.. .+++.+...+.
T Consensus 145 ---~------------~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~l~~L~~~l~- 202 (450)
T 2jdq_A 145 ---V------------LDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAKVS----PCLNVLSWLLF- 202 (450)
T ss_dssp ---H------------HHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTG----GGHHHHHHHTT-
T ss_pred ---H------------HHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHH----HHHHHHHHHHc-
Confidence 0 012356777765431 122232 56778888877543111 111122 23344444331
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 333 HMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
.++.+.+..++.+++.++..........+. ..+++.++..+.++++.+|..++.+|+.++.......
T Consensus 203 ------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 203 ------------VSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp ------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 124667788888898887654333333332 4688999999999999999999999999987655443
Q ss_pred hhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 413 HPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 413 ~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
...+. .++|.+++.++++++.+|..|+|+||.++..........+ ..+++.|+.++++++ ..++.+++++++.++.
T Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE--FRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHc
Confidence 33333 5889999999999999999999999999864333344444 268888999888654 7899999999999987
Q ss_pred hC-CCchH---------hHhhhcccCCCchHhHHHHHHHHHHHhhCc
Q psy9904 491 VC-PHDVA---------PLCSSLRNIRDNEEKDSAFRGMCAMITVNP 527 (592)
Q Consensus 491 ~~-~~~~~---------p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p 527 (592)
.. ++.+. +++..|.. .+..-+..|+.+|..++..++
T Consensus 348 ~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 348 GGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhch
Confidence 63 33221 23444432 233336778888988887554
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.71 E-value=4.9e-15 Score=161.32 Aligned_cols=394 Identities=15% Similarity=0.215 Sum_probs=257.0
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhh-HhhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPH-LNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~-l~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
..++.+.+.++++++.+|..|+.+|+.++.... ..+... -..++|.|+..|+++ ++.||..|+|+|++++....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~--- 163 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--- 163 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH---
Confidence 346666677789999999999999999976432 222222 246899999999998 89999999999999985321
Q ss_pred CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
.....++ . ...+|.|..++.+++..+|..|+|+|++++.... ..+ +
T Consensus 164 --~~~~~~~----~---------~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~-------------~~~------~ 209 (530)
T 1wa5_B 164 --AQTKVVV----D---------ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST-------------DYR------D 209 (530)
T ss_dssp --HHHHHHH----H---------TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH-------------HHH------H
T ss_pred --HHHHHHH----H---------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc-------------cch------H
Confidence 1111111 1 3456777777777778899999999988742100 000 0
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQ 332 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~ 332 (592)
. + .-..++|.|+..+. +.+..+ ..++.+|+.++...+... .......+++.|...+.
T Consensus 210 ~---~------------~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~~~l~~L~~lL~- 267 (530)
T 1wa5_B 210 Y---V------------LQCNAMEPILGLFN---SNKPSLIRTATWTLSNLCRGKKPQP---DWSVVSQALPTLAKLIY- 267 (530)
T ss_dssp H---H------------HHTTCHHHHHHGGG---SCCHHHHHHHHHHHHHHHCCSSSCC---CHHHHGGGHHHHHHHTT-
T ss_pred H---H------------HHcCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCCCCCC---cHHHHHhHHHHHHHHHc-
Confidence 0 0 11245677776553 223332 567778887775321111 11222333444444431
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 333 HMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
.++.+.+..++.+|+.++..........+. ..+++.++..+.+.+..+|..++.+|+.++.......
T Consensus 268 ------------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 334 (530)
T 1wa5_B 268 ------------SMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334 (530)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHH
Confidence 124677888999999998765444444443 4789999999999999999999999999987655444
Q ss_pred hhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 413 HPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 413 ~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
...+ ..++|.++..+.+..+.++..|+|+|+.++.........++ ..+++.|+.++++++ ..++..++++|+.++.
T Consensus 335 ~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 335 QVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE--YKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHh
Confidence 4333 36899999999999999999999999999864434444444 257888888887654 7899999999999987
Q ss_pred hCC---Cc---------hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchhh-------hhhHHHH-----HHHhhcc-C
Q psy9904 491 VCP---HD---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV-------VQEFIFF-----CDAVASW-S 545 (592)
Q Consensus 491 ~~~---~~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~-------~~~~~~~-----~~~i~~~-~ 545 (592)
... +. +.+++..|.. .+..-+..+..+|..++...+... .+....+ +..+... .
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~ 491 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 491 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc
Confidence 643 21 2224444432 233346778899998887654321 1111111 1222222 2
Q ss_pred CCchhHHHHHHHHHHHHHhc
Q psy9904 546 TPKEDLKEMFHKILHGFRTQ 565 (592)
Q Consensus 546 ~~~~~~~~~~~~ll~~~~~~ 565 (592)
.++.+++.....+|..|-..
T Consensus 492 ~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 492 NENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CSCHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHCCc
Confidence 46778888888888877754
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.71 E-value=2.5e-14 Score=167.06 Aligned_cols=371 Identities=10% Similarity=0.091 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc----cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcc
Q psy9904 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCL----SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGC 188 (592)
Q Consensus 113 ~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L----~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~ 188 (592)
.|.++...|..++...++ ..++.+++.+...+ .+++|+.|+++++++|.+++.+.+. ..++++.+++.+.
T Consensus 423 ~r~~~~~~L~~~~~~~~~---~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~-~~~~l~~l~~~l~-- 496 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGA---ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN-YSDVVPGLIGLIP-- 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS-CCSHHHHHHHHGG--
T ss_pred HHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch-hhHHHHHHHHHHH--
Confidence 377777777777665543 34556666666666 6789999999999999999876542 3455555555322
Q ss_pred ccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHh-------hhhHHHHHHHHHHHHHH
Q psy9904 189 MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE-------HKNLLILYDAIGTLADS 261 (592)
Q Consensus 189 l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~-------~~~l~~~~dai~~la~~ 261 (592)
.+.. +++.+|..+||++++|++++... ..|+.+++.. .+....+..++..+++.
T Consensus 497 ----------------~l~~-~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 497 ----------------RISI-SNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGNPELSVSSVSTLKKICRE 557 (963)
T ss_dssp ----------------GSCC-CSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------------hCCC-CcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 2222 35669999999999999987632 1333333321 12234678899999999
Q ss_pred hcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy9904 262 VGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQ-AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNP 340 (592)
Q Consensus 262 ~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g-~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~ 340 (592)
++..+. ||++.+++.|.+.++....+......+++|++.++.+.+ ..+.||+..+++.+...+.... +++
T Consensus 558 ~~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~-------~~~ 628 (963)
T 2x19_B 558 CKYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLA-------EEI 628 (963)
T ss_dssp TGGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-------SSC
T ss_pred HHHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-------hCC
Confidence 988887 899999999988765311112234678999999998886 7888888877665554444321 111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhh----------------------hHhhhccCchHHHHHHHhCC--CChHHHHH
Q psy9904 341 EQFDAPDKDFMIVALDLLSGLAEGLDMH----------------------IDSLVSNSNIMHLLYQCMQD--PMPEVRQS 396 (592)
Q Consensus 341 ~~~~~~d~~~~~~ald~l~~l~~~lg~~----------------------~~~~~~~~~l~~~l~~~l~~--~~~~vR~~ 396 (592)
.+.+....+...+++++.++++++.. +.++. ..+++.+...++. .+..+++.
T Consensus 629 --~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~v~e~ 704 (963)
T 2x19_B 629 --PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVFQLIQKVLSKWLNDAQVVEA 704 (963)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHHHHHHHHHHhccCchHHHHH
Confidence 01111233457889999999988732 33444 4677777666542 35789999
Q ss_pred HHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHH--hcCchhhhhHHHH----HHHHHHHHc-
Q psy9904 397 SFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISV--KLGEDMRRYVPMV----INQLIIIIN- 469 (592)
Q Consensus 397 a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~--~~~~~~~p~~~~i----l~~L~~~l~- 469 (592)
++.+++.++..+++.+.||++.+++.++....... ....++.++.++. ..++.+.+++..+ +..+..+++
T Consensus 705 ~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~ 781 (963)
T 2x19_B 705 VCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ 781 (963)
T ss_dssp HHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999887654311 1246677777776 3333345555544 445555554
Q ss_pred CCCCCchHHHHHHHHHHHhhhhCCCchH-------hHh----hhcccCCCchHhHHHHHHHHHHHhh
Q psy9904 470 RPNTPKTLLENTAITIGRLGYVCPHDVA-------PLC----SSLRNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 470 ~~~~~~~v~~na~~~lgrl~~~~~~~~~-------p~~----~~L~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
.....+.++++....++++...+|..+. .++ ..|. ..+.+-...++..+..++..
T Consensus 782 ~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~-~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 782 GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALK-FPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHGGG
T ss_pred CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhc
Confidence 3333478999999999999988876542 122 2222 12222255677778887764
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.66 E-value=4.9e-14 Score=155.99 Aligned_cols=431 Identities=15% Similarity=0.132 Sum_probs=248.3
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKAL 153 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~ 153 (592)
.+|-.|.++|+.+. .+++.+.+++.+.+++.|+++.+|++|+++++.+..+.++.+ +.+++.+..+|.|+++.
T Consensus 122 ~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~ 194 (618)
T 1w63_A 122 FVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHG 194 (618)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHH
T ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHh
Confidence 46666666666665 345667777777777777777777777777777777666533 35566667777777777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCc---------------hhhHHHHHH
Q psy9904 154 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSD---------------KKALVRAIT 218 (592)
Q Consensus 154 VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d---------------~~~~vr~~a 218 (592)
|+.+|+++|+.+++.-.+ ...++. .++|.+..+|.+ .+...+...
T Consensus 195 V~~~Al~~L~~i~~~~~~--~~~~~~------------------~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~i 254 (618)
T 1w63_A 195 VLHTSVVLLTEMCERSPD--MLAHFR------------------KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRI 254 (618)
T ss_dssp HHHHHHHHHHHHCCSHHH--HHHHHH------------------TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChH--HHHHHH------------------HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHH
Confidence 777777777776532110 001111 122222222211 133444444
Q ss_pred Hhhhhhhhhhhcc--CCcccchHHHHHh-----hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCc
Q psy9904 219 CWTLSRYSHWVVS--QPHDSYLKPLMTE-----HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK 291 (592)
Q Consensus 219 ~~~L~~~a~~~~~--~~~~~y~~~~~~~-----~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~ 291 (592)
...|+.|+..-+. +...+++..++.. ..+....+.|+.++.. ++. .+......++.|...+. +.++
T Consensus 255 l~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~-l~~---~~~l~~~a~~~L~~~L~---~~d~ 327 (618)
T 1w63_A 255 LRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD-IKS---ESGLRVLAINILGRFLL---NNDK 327 (618)
T ss_dssp HHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH-SCC---CHHHHHHHHHHHHHHHT---CSST
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHHHh---CCCC
Confidence 4444555421100 0111112222110 1223455677666654 221 12333345566655432 3445
Q ss_pred cc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhH
Q psy9904 292 DL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID 370 (592)
Q Consensus 292 ~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~ 370 (592)
++ +.++.+++.++...+..+.+|...+ ..++. ++|..++..+++++..++.. .++.
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i--------~~~l~-------------d~d~~Ir~~alelL~~l~~~--~nv~ 384 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTI--------VDCLK-------------DLDVSIKRRAMELSFALVNG--NNIR 384 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHH--------HHGGG-------------SSCHHHHHHHHHHHHHHCCS--SSTH
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHH--------HHHcc-------------CCChhHHHHHHHHHHHHccc--ccHH
Confidence 54 7889999999988766666665433 33331 23677888999999888653 2232
Q ss_pred hhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 371 SLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
.+++.+...+.+.+.++|..++..|+.++..+.+.+..|++.++..+-. ....++..++..+.++....+
T Consensus 385 ------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~----~~~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 385 ------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT----AGSYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp ------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH----TGGGSCSSHHHHHHHHHHHSC
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh----ccchhHHHHHHHHHHHHhcCh
Confidence 3556666666677899999999999999998777777777666644433 334566667777888776554
Q ss_pred chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC---------chHh-----Hhhhcc-c-CCCchHhHH
Q psy9904 451 EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH---------DVAP-----LCSSLR-N-IRDNEEKDS 514 (592)
Q Consensus 451 ~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~---------~~~p-----~~~~L~-~-~~d~~Ek~~ 514 (592)
+ .. ..++..|...+.++.....+...++|.+|..+...++ .+.| ++..+. . ..+..-|..
T Consensus 455 ~-l~---~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~ 530 (618)
T 1w63_A 455 E-MH---AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGY 530 (618)
T ss_dssp S-TH---HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred h-HH---HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3 22 3355566666654222345556799999999864211 1222 333222 1 223334888
Q ss_pred HHHHHHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCH
Q psy9904 515 AFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPD 580 (592)
Q Consensus 515 a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~ 580 (592)
+..++.++....|.. .+.+..++.... ...+.|+++.....++-+.. .++.-..+++.+|+
T Consensus 531 ~lta~~Kl~~~~~~~-~~~l~~~L~~~~--~~~d~evrdRA~~y~~ll~~--~~~~~~~vl~~~P~ 591 (618)
T 1w63_A 531 ALTAIMKLSTRFTCT-VNRIKKVVSIYG--SSIDVELQQRAVEYNALFKK--YDHMRSALLERMPV 591 (618)
T ss_dssp HHHHHHHHHTTCSSC-HHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHT--TTTHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCcch-HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcC--cHHHHHHHhhcCCC
Confidence 899999999887753 333343433321 24677888876666665554 22345567788875
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.61 E-value=1.6e-12 Score=140.66 Aligned_cols=393 Identities=12% Similarity=0.176 Sum_probs=243.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhH-hhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy9904 100 PILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHL-NELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQPHDS 176 (592)
Q Consensus 100 ~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l-~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~~~ 176 (592)
+-+.+.++|.+...+..|+.++..+...-. +.+..-+ ..++|.|+++|+.. ++.+|..|+|+|++++..-. +
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~-----e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-----E 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-----H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-----H
Confidence 334466789999999999999988764322 2232222 35899999999754 58999999999999985321 1
Q ss_pred chHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHH
Q psy9904 177 YLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIG 256 (592)
Q Consensus 177 ~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~ 256 (592)
.-..+++ ...+|.|..+|.+++..++..|+|+|++++... ...+ +.
T Consensus 135 ~~~~vv~-------------~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~----------------~~~r---~~-- 180 (510)
T 3ul1_B 135 QTKAVVD-------------GGAIPAFISLLASPHAHISEQAVWALGNIAGDG----------------SAFR---DL-- 180 (510)
T ss_dssp HHHHHHH-------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----------------HHHH---HH--
T ss_pred HHHHHHH-------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----------------HHHH---HH--
Confidence 1111111 356788888998888999999999999875311 0000 00
Q ss_pred HHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc---chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHH
Q psy9904 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD---LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQH 333 (592)
Q Consensus 257 ~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~---~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~ 333 (592)
+ .-...+++|+..+.....+... +..+..+++.++. +..-.+-+ .....+++.|...+.
T Consensus 181 -v------------~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~--~~~~~~~~-~~~~~~lp~L~~LL~-- 242 (510)
T 3ul1_B 181 -V------------IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR--NKNPAPPL-DAVEQILPTLVRLLH-- 242 (510)
T ss_dssp -H------------HHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC--CCSSCCCH-HHHHHHHHHHHHHTT--
T ss_pred -H------------HHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh--cccchhHH-HHHHhHHHHHHHHHh--
Confidence 0 0012355666554321111111 1233444444443 22111111 122344555555431
Q ss_pred HhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhh
Q psy9904 334 MANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH 413 (592)
Q Consensus 334 ~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~ 413 (592)
.++.+.+..++.+|+.++..-........ ...+++.+..++.+.+..++..++.+|+.++........
T Consensus 243 -----------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~ 310 (510)
T 3ul1_B 243 -----------HNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310 (510)
T ss_dssp -----------CSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHHhhchhhhHHHHH-hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH
Confidence 23566777888888888765444333333 256889999999999999999999999999865444332
Q ss_pred hhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 414 PCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 414 ~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
..+ ...++.+...++.+...++..|+|+|+.++..........+. .+++.|+.++.+.+ ..++.+|+++|+.++..
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHcc
Confidence 222 246777888888889999999999999997543333333332 58899999998765 78999999999999875
Q ss_pred CCC-c---------hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchh-hhhhHHHH------HHHhhccC-CCchhHHH
Q psy9904 492 CPH-D---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGG-VVQEFIFF------CDAVASWS-TPKEDLKE 553 (592)
Q Consensus 492 ~~~-~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~-~~~~~~~~------~~~i~~~~-~~~~~~~~ 553 (592)
... . +.|++..|. ..|.+-...+..+|.++.+..+.. -...+..+ ++.|...+ ..++++++
T Consensus 389 ~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~ 467 (510)
T 3ul1_B 389 GTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467 (510)
T ss_dssp CCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 432 1 333555543 344444667788888777643211 01111111 12232222 46788999
Q ss_pred HHHHHHHHHHh
Q psy9904 554 MFHKILHGFRT 564 (592)
Q Consensus 554 ~~~~ll~~~~~ 564 (592)
...+||..|-.
T Consensus 468 ~A~~iie~yf~ 478 (510)
T 3ul1_B 468 ASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHCC
Confidence 99999988763
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.7e-14 Score=140.34 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=151.4
Q ss_pred ccchHHHHHHHHHHHHHhhhch---hhhHhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHh
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE---ELLPVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITC 146 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~---~vl~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~ 146 (592)
.+|..|++|+.+|..+.+..++ ..+..+++.+...+. |++..+|.+|+.+||.++.+.+..+.+|++.++|.++..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5699999999999999988542 335678888888895 999999999999999999999988999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
++|+++.||.+++.+|..+++... +. .++|.+...+++.+..+|..++..++.
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~-------~~------------------~ll~~l~~~l~~~~~~vr~~~l~~l~~-- 159 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTS-------LE------------------AQQESIVESLSNKNPSVKSETALFIAR-- 159 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSC-------HH------------------HHHHHHHHHTTCSCHHHHHHHHHHHHH--
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCC-------HH------------------HHHHHHHHHHcCCChHHHHHHHHHHHH--
Confidence 999999999999999999876321 23 344444455566666676664444433
Q ss_pred hhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhccc-CCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHH
Q psy9904 227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHH-LNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVA 304 (592)
Q Consensus 227 ~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~-~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia 304 (592)
+....+++ +. .+|++.++|.|...++ |..+++ ..+.+|++.++
T Consensus 160 -------------------------------~l~~~~~~~~~-~~~l~~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 160 -------------------------------ALTRTQPTALN-KKLLKLLTTSLVKTLN---EPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp -------------------------------HHTTCCGGGCC-HHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHcCCCCcc-HHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHH
Confidence 33333333 22 3789999999998653 545444 68999999999
Q ss_pred HHHhhc-cccccHHHHHHHHHHHHHHHH
Q psy9904 305 TALQAG-FLPYCEPVYRRCVSLIEQTLN 331 (592)
Q Consensus 305 ~~~g~~-f~py~~~v~~~~~~~l~~~l~ 331 (592)
.++|.+ |.||++.+-+.-...|..++.
T Consensus 205 ~~vg~~~~~~~l~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 205 KLMGDKAVTPLLADVDPLKMAKIKECQE 232 (242)
T ss_dssp HHHCHHHHGGGGTTSCHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999986 888888664444445554443
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.9e-14 Score=140.18 Aligned_cols=202 Identities=11% Similarity=0.177 Sum_probs=152.4
Q ss_pred HHHhhcCCChhHHHHHHHHHHH-HHhhchhch--hhhHhhHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHhh-cCCCcc
Q psy9904 102 LKETLFHHDWEIKESGILALGA-IAEGCMNGM--VPHLNELVPFLITCL-SDKKALVRAITCWTLSRYSHWVV-SQPHDS 176 (592)
Q Consensus 102 l~~~l~s~~~~~R~aa~~aLg~-iaeg~~~~i--~~~l~~lvp~l~~~L-~D~~~~VR~~a~~aL~~l~~~~~-~~~~~~ 176 (592)
+.+.++|++|..|++|+.+|+. +++||++.. ..++.+++..+.+.+ +|+++.||..||.+|+.+++.+. +. ..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~-f~- 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-FS- 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-SC-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-cc-
Confidence 4556789999999999999999 999988765 456678899999999 89999999999999999997764 31 11
Q ss_pred chHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHH
Q psy9904 177 YLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIG 256 (592)
Q Consensus 177 ~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~ 256 (592)
T Consensus 99 -------------------------------------------------------------------------------- 98 (249)
T 2qk1_A 99 -------------------------------------------------------------------------------- 98 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Q psy9904 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMA 335 (592)
Q Consensus 257 ~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~ 335 (592)
.+|...++|.++.++. |..+.+ ..+..|+
T Consensus 99 ------------~~y~~~llp~ll~~l~---dkk~~V~~aa~~al----------------------------------- 128 (249)
T 2qk1_A 99 ------------KDYVSLVFTPLLDRTK---EKKPSVIEAIRKAL----------------------------------- 128 (249)
T ss_dssp ------------HHHHHHHHHHHHHGGG---CCCHHHHHHHHHHH-----------------------------------
T ss_pred ------------HHHHHHHHHHHHHHHc---CCCHHHHHHHHHHH-----------------------------------
Confidence 0355556667766442 211111 1111222
Q ss_pred hcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhh-HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch---hh
Q psy9904 336 NSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHI-DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF---SH 411 (592)
Q Consensus 336 ~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~-~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~---~~ 411 (592)
..++..+.... .+|+ +.+++.++..+++.++.+|+.++.+|+.++...+ ..
T Consensus 129 -----------------------~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 129 -----------------------LTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp -----------------------HHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred -----------------------HHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 22222222111 1224 4577788888888899999999999999999988 56
Q ss_pred hhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc-hhhhhHHHH
Q psy9904 412 VHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE-DMRRYVPMV 460 (592)
Q Consensus 412 ~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~-~~~p~~~~i 460 (592)
+.+|+ +.++|.+.+.+++.+.+||..|..++|.++...|+ .|.||++.+
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 88999 99999999999999999999999999999999986 488888764
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.61 E-value=2.7e-12 Score=139.55 Aligned_cols=394 Identities=12% Similarity=0.180 Sum_probs=245.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhch-hchhhhH-hhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCM-NGMVPHL-NELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~-~~i~~~l-~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
++-+.+.++|++...+..|+.++..+...-. +.+...+ ..++|.|++.|+ +.++.++..|+|+|++++..-..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~---- 153 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE---- 153 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH----
Confidence 4555567789999999999988887653222 2232222 468999999996 45699999999999999864211
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHH
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAI 255 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai 255 (592)
.-..++. ...+|.|..++.+++..++..|+|+|++++..- ...+ +.
T Consensus 154 -~~~~vv~-------------~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~----------------~~~r---~~- 199 (529)
T 3tpo_A 154 -QTKAVVD-------------GGAIPAFISLLASPHAHISEQAVWALGNIAGAG----------------SAFR---DL- 199 (529)
T ss_dssp -HHHHHHH-------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----------------HHHH---HH-
T ss_pred -HHHHHHH-------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC----------------HHHH---HH-
Confidence 1111111 457888888999889999999999999875310 0000 00
Q ss_pred HHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc---chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q psy9904 256 GTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD---LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQ 332 (592)
Q Consensus 256 ~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~---~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~ 332 (592)
+. -...+++|+..+..-..+... +..+..+++.++. +..-.+-+ .....+++.|...+.
T Consensus 200 --i~------------~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~--~~~~~~~~-~~~~~~lp~L~~LL~- 261 (529)
T 3tpo_A 200 --VI------------KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR--NKNPAPPL-DAVEQILPTLVRLLH- 261 (529)
T ss_dssp --HH------------HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC--CCTTCCCH-HHHHHHHHHHHHHTT-
T ss_pred --HH------------HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh--cccchhhH-HHHhhHHHHHHHHhc-
Confidence 00 012355666544321111111 1223344444432 12111111 222344555555432
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 333 HMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
.++.+.+..++.+|+.++..-.......+ ...+++.++.++.+.+..++..++.+|+.++.......
T Consensus 262 ------------~~~~~v~~~a~~aL~~l~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 328 (529)
T 3tpo_A 262 ------------HNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 328 (529)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ------------CCcHHHHHHHHHHHHHhhhhhhhhHHHHH-hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHH
Confidence 23466777888888888765544333333 25788999999999999999999999999986544332
Q ss_pred hhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 413 HPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 413 ~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
...+ ...++.|...+......++..|+|+|+.++..........+. .+++.|+.++.+++ ..++..|+|+|+.++.
T Consensus 329 ~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC--HHHHHHHHHHHHHHHc
Confidence 2222 346778888888889999999999999998644333333333 58899999998765 7899999999999986
Q ss_pred hCC-Cc---------hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchh-hhhhHHHHH------HHhhccC-CCchhHH
Q psy9904 491 VCP-HD---------VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGG-VVQEFIFFC------DAVASWS-TPKEDLK 552 (592)
Q Consensus 491 ~~~-~~---------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~-~~~~~~~~~------~~i~~~~-~~~~~~~ 552 (592)
... +. +.|+|..|. ..|.+-...+..+|.++.+..+.. -.+.+..++ +.|.... ..+++++
T Consensus 407 ~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~ 485 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 485 (529)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHH
T ss_pred CCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHH
Confidence 543 21 334555553 345544667888888877643211 011122111 2222222 4678899
Q ss_pred HHHHHHHHHHHh
Q psy9904 553 EMFHKILHGFRT 564 (592)
Q Consensus 553 ~~~~~ll~~~~~ 564 (592)
+...+||..|-.
T Consensus 486 ~~A~~iie~yf~ 497 (529)
T 3tpo_A 486 KASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC
Confidence 999999988753
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.61 E-value=3.2e-12 Score=140.82 Aligned_cols=442 Identities=12% Similarity=0.135 Sum_probs=264.1
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+..+|+.+..++..++...++ ....+.+.+.+-++|+++.+|..|+.+||.+. .. ...+.++|.+.++|.|++
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~---~~~~~l~~~l~~~L~d~~ 134 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPD-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD---KITEYLCEPLRKCLKDED 134 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHH-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG---GGHHHHHHHHHHHSSCSC
T ss_pred CHHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH---HHHHHHHHHHHHHcCCCC
Confidence 367899999999998876543 34455677778889999999999998888774 22 345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~ 231 (592)
|.||..|++|+++++... ++ .++. ..++|.+..++.|+++.|+..|.++|+.++..-+.
T Consensus 135 ~~VRk~A~~al~~i~~~~-p~----~~~~----------------~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 135 PYVRKTAAVCVAKLHDIN-AQ----MVED----------------QGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHHHHHHHHHSS-CC----CHHH----------------HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred hHHHHHHHHHHHHHHhhC-hh----hccc----------------ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 999999999999998732 21 1110 24567777788888999999999999887543221
Q ss_pred CCccc----chHHHHHhh---hhH--HHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHH
Q psy9904 232 QPHDS----YLKPLMTEH---KNL--LILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSS 302 (592)
Q Consensus 232 ~~~~~----y~~~~~~~~---~~l--~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ 302 (592)
..... .+..++... .+. ..++.+++.+ ++. .++....+++.+...+ .+.+. ...++|+..
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l----~~~--~~~~~~~~l~~l~~~l---~~~~~--~V~~ea~~~ 262 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY----NPK--DDREAQSICERVTPRL---SHANS--AVVLSAVKV 262 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS----CCC--SHHHHHHHHHHHTTCS---CSSTT--HHHHHHHHH
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHHH---cCCCh--HHHHHHHHH
Confidence 10111 122222110 010 1122222211 111 1233455556555432 22222 334555554
Q ss_pred HHHHHhhcc--c-cccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchH
Q psy9904 303 VATALQAGF--L-PYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIM 379 (592)
Q Consensus 303 ia~~~g~~f--~-py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~ 379 (592)
+..-. ... . ..+..+++++.+.+.. +. .++.+.+-.++..++.++......+.+++ ..+
T Consensus 263 i~~l~-~~~~~~~~~~~~~~~~~~~~L~~-L~-------------~~d~~vr~~aL~~l~~i~~~~p~~~~~~~--~~~- 324 (591)
T 2vgl_B 263 LMKFL-ELLPKDSDYYNMLLKKLAPPLVT-LL-------------SGEPEVQYVALRNINLIVQKRPEILKQEI--KVF- 324 (591)
T ss_dssp HHHSC-CSCCBTTBSHHHHHHHTHHHHHH-HT-------------TSCHHHHHHHHHHHHHHHHHCCSTTTTCT--TTT-
T ss_pred HHHHh-hccCCCHHHHHHHHHHHHHHHHH-Hh-------------cCCccHHHHHHHHHHHHHHhChHHHHHHH--Hhh-
Confidence 44321 111 1 1223333333332222 10 13567888999999999887655555554 222
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHH
Q psy9904 380 HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM 459 (592)
Q Consensus 380 ~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~ 459 (592)
.|+.+++..||..++.++..++.. .-+..+++.|...+.+.+.++|..+++++|.++.+.+ +....
T Consensus 325 ----~~~~~d~~~Ir~~al~~L~~l~~~------~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~ 390 (591)
T 2vgl_B 325 ----FVKYNDPIYVKLEKLDIMIRLASQ------ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAER 390 (591)
T ss_dssp ----SCCTTSCHHHHHHHHHHHHHTCCS------STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHH
T ss_pred ----eeccCChHHHHHHHHHHHHHHCCh------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHH
Confidence 244344599999999999887632 1256788888888888899999999999999997653 44566
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc----hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHH
Q psy9904 460 VINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD----VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFI 535 (592)
Q Consensus 460 il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~----~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~ 535 (592)
+++.|+.+++... ..++..++.+++.+...+|+. +...+..+....+.+-+..+...+|.....-+. -.
T Consensus 391 ~v~~Ll~ll~~~~--~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~ 463 (591)
T 2vgl_B 391 CVSTLLDLIQTKV--NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----AD 463 (591)
T ss_dssp HHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HH
T ss_pred HHHHHHHHHcccc--hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HH
Confidence 7777888887654 677778888999998888864 333555554433333244455555544332111 12
Q ss_pred HHHHHhh-ccCCCchhHHHHHHHHHHHHHhccCh---hhHHHHHh-----cCCHHHHHHHHHhhC
Q psy9904 536 FFCDAVA-SWSTPKEDLKEMFHKILHGFRTQVGD---ENWQRFAD-----QFPDQLRDRLSAMYG 591 (592)
Q Consensus 536 ~~~~~i~-~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~-----~l~~~~~~~l~~~~~ 591 (592)
.++..+. ++...+..++..+...+..+....|+ ..+..++. +-.+++|++-...++
T Consensus 464 ~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 464 ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 3333332 34444556666555555554444443 12333332 346778777555443
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.1e-14 Score=139.90 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=150.2
Q ss_pred cccchHHHHHHHHHHH-HHhhhch-----hhhHhHHHHHHHhh-cCCChhHHHHHHHHHHHHHhhch-hchh-hhHhhHH
Q psy9904 70 LSDWNLRKCSAAALDV-LANVFRE-----ELLPVLLPILKETL-FHHDWEIKESGILALGAIAEGCM-NGMV-PHLNELV 140 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~-la~~~~~-----~vl~~ll~~l~~~l-~s~~~~~R~aa~~aLg~iaeg~~-~~i~-~~l~~lv 140 (592)
..+|.-|++|...|.. +.+++++ .-+..++..+.+.+ ++++..+|.+|+.+||+++++.. +.+. +|...++
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 3579999999999999 8876543 12357788888888 79999999999999999999998 8898 9999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHh
Q psy9904 141 PFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCW 220 (592)
Q Consensus 141 p~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~ 220 (592)
|.++..++|.++.||.++..||..+++.+.+.....|++.+++.|+..+ ++.+..+|..++.
T Consensus 107 p~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l------------------~~k~~~vk~~al~ 168 (249)
T 2qk1_A 107 TPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM------------------KHKTPQIRMECTQ 168 (249)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT------------------TCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH------------------cCCChHHHHHHHH
Confidence 9999999999999999999999999998765322234777777666654 4435556655444
Q ss_pred hhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcc---cCCChhhH-hhhhHHHHHHHhhcccCCccc-hH
Q psy9904 221 TLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGH---HLNKPEYI-SLLMPPLIQKWNILKDEDKDL-FP 295 (592)
Q Consensus 221 ~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~---~~~~~~y~-~~lmp~L~~~~~~~~d~~~~~-~~ 295 (592)
.+. .++...+. .+. +|+ +.++|.|.+.++ |.++++ ..
T Consensus 169 ~l~---------------------------------~~~~~~~~~~~~l~--~~l~~~iip~l~~~l~---D~~~~VR~a 210 (249)
T 2qk1_A 169 LFN---------------------------------ASMKEEKDGYSTLQ--RYLKDEVVPIVIQIVN---DTQPAIRTI 210 (249)
T ss_dssp HHH---------------------------------HHHHHCCSCSHHHH--HHHTTTHHHHHHHHHT---CSSHHHHHH
T ss_pred HHH---------------------------------HHHHHcCCcchhHH--HHHHHHHHHHHHHHhc---CCCHHHHHH
Confidence 443 33444442 233 689 999999998763 555554 68
Q ss_pred HHHHHHHHHHHHhhc-cccccHHH
Q psy9904 296 LLECLSSVATALQAG-FLPYCEPV 318 (592)
Q Consensus 296 ~~e~l~~ia~~~g~~-f~py~~~v 318 (592)
+++|++.++.++|++ |.||++.+
T Consensus 211 A~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 211 GFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999985 88887754
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.1e-14 Score=139.61 Aligned_cols=205 Identities=12% Similarity=0.212 Sum_probs=153.3
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhc
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
++++.+-+-+.+.++|.+|..|++|+.+|+.++++++.....++.++++.+...|. |+++.||..|+.+|+.++..+++
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 44555555566778999999999999999999999876555667899999999995 99999999999999999865432
Q ss_pred CCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHH
Q psy9904 172 QPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLIL 251 (592)
Q Consensus 172 ~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~ 251 (592)
T Consensus 91 -------------------------------------------------------------------------------- 90 (242)
T 2qk2_A 91 -------------------------------------------------------------------------------- 90 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Q psy9904 252 YDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLN 331 (592)
Q Consensus 252 ~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~ 331 (592)
.+. +|++.++|.++..+. |....+
T Consensus 91 -------------~~~--~~~~~ilp~ll~~l~---d~~~~v-------------------------------------- 114 (242)
T 2qk2_A 91 -------------RFS--NYASACVPSLLEKFK---EKKPNV-------------------------------------- 114 (242)
T ss_dssp -------------GGH--HHHHHHHHHHHHGGG---CCCHHH--------------------------------------
T ss_pred -------------hHH--HHHHHHHHHHHHHHc---CCCHHH--------------------------------------
Confidence 111 566677777776542 222111
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh-
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS- 410 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~- 410 (592)
|..+..++..++...+ + ..+++.+...+++.++.+|+.++.+|+.++...++
T Consensus 115 -------------------r~~a~~aL~~~~~~~~------~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 115 -------------------VTALREAIDAIYASTS------L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -------------------HHHHHHHHHHHHTTSC------H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred -------------------HHHHHHHHHHHHHcCC------H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 1111122222222211 1 24567777788888999999999999998877643
Q ss_pred -hhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCch-hhhhHHHH
Q psy9904 411 -HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGED-MRRYVPMV 460 (592)
Q Consensus 411 -~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~-~~p~~~~i 460 (592)
.+.+|++.++|.+...+++..++||..|..++|.++...|.. +.+|++.+
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999865 77777654
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.58 E-value=3.3e-13 Score=150.53 Aligned_cols=393 Identities=9% Similarity=0.000 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHHHHhhhc---------hhhhHhHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhchhchhhh-HhhHHH
Q psy9904 74 NLRKCSAAALDVLANVFR---------EELLPVLLPILKETLFHH--DWEIKESGILALGAIAEGCMNGMVPH-LNELVP 141 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~---------~~vl~~ll~~l~~~l~s~--~~~~R~aa~~aLg~iaeg~~~~i~~~-l~~lvp 141 (592)
.+|.-|+.+|..++...+ +.-+..+++.+.+++.++ +..+|+.|+.+|..++.+......-. -...+|
T Consensus 345 ~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip 424 (810)
T 3now_A 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424 (810)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHH
Confidence 467788889999985432 122567888888999888 89999999999999998765322211 246899
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc----------------CCccch--hhhHHHH
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN----------------GMVPHL--NELVPFL 203 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~----------------~~vq~l--~~l~p~l 203 (592)
.|+++|+++++.+++.|.|+|++++..-..+ +.++.+ ..+-+... +|++.+ ...+|.|
T Consensus 425 ~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q---~~~~~l-~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ---EMLPEM-IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC---CCCCSC-GGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCchhh---hhhHHH-HHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999999999998732111 000000 00000000 111211 4678999
Q ss_pred HHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHH
Q psy9904 204 ITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKW 283 (592)
Q Consensus 204 ~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~ 283 (592)
..++.++...++..|+|+|++++.. ..+ ...+.+ ...+|+|+..+
T Consensus 501 V~LL~s~s~~vqe~Aa~aL~NLA~d----------------~~~-------r~~Vv~------------~Gaip~Lv~LL 545 (810)
T 3now_A 501 CALAKTESHNSQELIARVLNAVCGL----------------KEL-------RGKVVQ------------EGGVKALLRMA 545 (810)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHTS----------------HHH-------HHHHHH------------TTHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCC----------------HHH-------HHHHHH------------CCCHHHHHHHH
Confidence 9999888889999999999987521 001 111111 12356666655
Q ss_pred hhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHH
Q psy9904 284 NILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLA 362 (592)
Q Consensus 284 ~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~ 362 (592)
.. .+.. ...+..||+.++....+...=....+. .+++.|...|. . +.+......++.+|+.++
T Consensus 546 ~s---~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~-~aIppLv~LL~--------~----~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 546 LE---GTEKGKRHATQALARIGITINPEVSFSGQRSL-DVIRPLLNLLQ--------Q----DCTALENFESLMALTNLA 609 (810)
T ss_dssp HS---SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH-HTHHHHHHTTS--------T----TSCHHHHHHHHHHHHHHT
T ss_pred cc---CCHHHHHHHHHHHHHHhcCCChhhhhcchhhh-cHHHHHHHHhC--------C----CCcHHHHHHHHHHHHHHh
Confidence 32 2222 356778888877653322110111111 12333333221 0 011122235777888887
Q ss_pred hhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCCChhHHHHHHH
Q psy9904 363 EGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATW 440 (592)
Q Consensus 363 ~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~~~~v~~~A~~ 440 (592)
..-...-...++ ...++.+..++.+.+..+|+.|+.+|++++..- .....++ ...+|.|+..++.++.+++..|+|
T Consensus 610 ~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 610 SMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 653222222222 457888888888999999999999999998642 3334444 258999999999899999999999
Q ss_pred HHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh-----HhhhcccCC------
Q psy9904 441 AIGEISVKLGEDMRRYVP--MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP-----LCSSLRNIR------ 507 (592)
Q Consensus 441 ~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p-----~~~~L~~~~------ 507 (592)
+|+.++.......+..+. ..++.|+.++.+++ ..++..|+|+++.+....++...- .+..|..+.
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d--~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~ 765 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPS--PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDT 765 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS--HHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTST
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccC
Confidence 999998754444444443 58899999998765 889999999999998744322111 222333321
Q ss_pred CchHhHHHHHHHHHHHhh
Q psy9904 508 DNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 508 d~~Ek~~a~~~l~~li~~ 525 (592)
+.+-...|.++|..++..
T Consensus 766 ~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 766 RAKAREVATQCLAAAERY 783 (810)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhC
Confidence 222355677777777753
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=8.5e-12 Score=138.00 Aligned_cols=379 Identities=12% Similarity=0.076 Sum_probs=228.2
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+...||.+..++..++..- +++...+.+.+.+-++|+++.+|-.|+.+||.+.. . ...+.++|.+.++|+|++
T Consensus 83 ~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~----~~~~~l~~~l~~~L~~~~ 155 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--S----EMCRDLAGEVEKLLKTSN 155 (618)
T ss_dssp SHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--H----HHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--H----HHHHHHHHHHHHHHcCCC
Confidence 4668888888777766543 34555677788888899999999999999999873 1 345788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~ 231 (592)
|.||.+|+.|++++....++ . ++.++|.+..++.|.++.|+..|+.+|..++..-+.
T Consensus 156 ~~VRk~A~~al~~l~~~~p~-~----------------------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 156 SYLRKKAALCAVHVIRKVPE-L----------------------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-G----------------------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHChH-H----------------------HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 99999999999999985432 1 123445555666777777877777777765421110
Q ss_pred --CCc---ccchHHHHHhh---------------hhH--HHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccC
Q psy9904 232 --QPH---DSYLKPLMTEH---------------KNL--LILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDE 289 (592)
Q Consensus 232 --~~~---~~y~~~~~~~~---------------~~l--~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~ 289 (592)
..+ .|.+...+.+. .+. ..+.++++.++. . .|..-+.+++.|.+..... +.
T Consensus 213 ~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~----~--~~~~~~~~~~~L~~l~~~~-~~ 285 (618)
T 1w63_A 213 MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR----N--DDDSSEAMNDILAQVATNT-ET 285 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT----T--CHHHHHTTHHHHHHHHHTS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHHHHhcc-cc
Confidence 000 00010011000 000 122233333321 1 1112222233333222111 11
Q ss_pred Cc--cchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh
Q psy9904 290 DK--DLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM 367 (592)
Q Consensus 290 ~~--~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~ 367 (592)
.+ ....+++|...+.. ++. -+.+...+++.+...+. ..+.+.+..+++.++.++..-+.
T Consensus 286 ~~~~~~aV~~ea~~~i~~-l~~-----~~~l~~~a~~~L~~~L~-------------~~d~~vr~~aL~~L~~i~~~~p~ 346 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMD-IKS-----ESGLRVLAINILGRFLL-------------NNDKNIRYVALTSLLKTVQTDHN 346 (618)
T ss_dssp SSTHHHHHHHHHHHHHHH-SCC-----CHHHHHHHHHHHHHHHT-------------CSSTTTHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHh-cCC-----CHHHHHHHHHHHHHHHh-------------CCCCchHHHHHHHHHHHHhhCHH
Confidence 11 12345566655543 111 12333344555555442 12456777899999999886554
Q ss_pred hhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 368 HIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
.+.+ ....++.|+.+++.++|..++.++..++.. .. +..+++.++..+.+.+.++|..++.++|.+|.
T Consensus 347 ~~~~------~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 347 AVQR------HRSTIVDCLKDLDVSIKRRAMELSFALVNG--NN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHGG------GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHccCCChhHHHHHHHHHHHHccc--cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4444 456888999999999999999999998753 22 34455566666656788999999999999998
Q ss_pred hcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchH----hHhhhccc-CCCchHhHHHHHHHHHH
Q psy9904 448 KLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA----PLCSSLRN-IRDNEEKDSAFRGMCAM 522 (592)
Q Consensus 448 ~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~----p~~~~L~~-~~d~~Ek~~a~~~l~~l 522 (592)
.....+..|++.++ ..++... ..++..++.++..+...+|+.-. ..+..|.. .........+...+|..
T Consensus 415 k~~~~~~~~v~~ll----~lL~~~~--~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy 488 (618)
T 1w63_A 415 KYAPSKRWHIDTIM----RVLTTAG--SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEY 488 (618)
T ss_dssp SSCCCHHHHHHHHH----HHHHHTG--GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHH----HHHHhcc--chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence 87666666665555 4444322 34555566777788777776422 24444443 22233344566666666
Q ss_pred Hh
Q psy9904 523 IT 524 (592)
Q Consensus 523 i~ 524 (592)
..
T Consensus 489 ~~ 490 (618)
T 1w63_A 489 GD 490 (618)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.50 E-value=1.3e-12 Score=141.33 Aligned_cols=344 Identities=15% Similarity=0.209 Sum_probs=212.0
Q ss_pred chHHHHHHHHHHHHHhh--hc--hhhhH-hHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHH
Q psy9904 73 WNLRKCSAAALDVLANV--FR--EELLP-VLLPILKETLFH-HDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLIT 145 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~--~~--~~vl~-~ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~ 145 (592)
-..+..|..++-.+... -| +.++. -++|.|.++|++ .++.++..|+.||+.|+.|..+.....+ ...+|.|+.
T Consensus 71 ~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~ 150 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 34566666666655432 22 23332 367777777764 4578999999999999988775443333 358999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchh-----hHHHHHHHh
Q psy9904 146 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKK-----ALVRAITCW 220 (592)
Q Consensus 146 ~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~-----~~vr~~a~~ 220 (592)
+|+++++.||..|+|+|++++..... ....+ .. ...+|.+..++...+ ..+...++|
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~------~r~~v---~~---------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSA------FRDLV---IK---------HGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHH------HHHHH---HH---------TTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHH------HHHHH---HH---------cCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 99999999999999999999853211 11110 00 123344444443221 112233444
Q ss_pred hhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHH
Q psy9904 221 TLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLEC 299 (592)
Q Consensus 221 ~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~ 299 (592)
++.++++ ... ....-.....++|.|.+.+. .++.++ ..+..|
T Consensus 213 ~L~nl~~---------------------------------~~~-~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~A~~a 255 (510)
T 3ul1_B 213 TLSNLCR---------------------------------NKN-PAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHC---------------------------------CCS-SCCCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred HHHHHhh---------------------------------ccc-chhHHHHHHhHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 4443321 100 11111234567777776543 233333 456677
Q ss_pred HHHHHHHHhhccccccHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCch
Q psy9904 300 LSSVATALQAGFLPYCEPVY-RRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNI 378 (592)
Q Consensus 300 l~~ia~~~g~~f~py~~~v~-~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l 378 (592)
|+.++....... ..+. ..+++.+...+. .++...+..++.+++.++..-.......+. ...
T Consensus 256 L~~L~~~~~~~~----~~i~~~g~i~~Lv~lL~-------------~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~ 317 (510)
T 3ul1_B 256 ISYLTDGPNERI----EMVVKKGVVPQLVKLLG-------------ATELPIVTPALRAIGNIVTGTDEQTQKVID-AGA 317 (510)
T ss_dssp HHHHTSSCHHHH----HHHHTTTCHHHHHHHHT-------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTG
T ss_pred HHHHhhchhhhH----HHHHhcccchhhhhhhc-------------CCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccc
Confidence 777653211100 0000 011222333331 124566778888888887654433333332 456
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
++.+...+++++..+|+.|..+|++++............ .++|.++..+.+.+..++..|+|+|+.++.....+...++
T Consensus 318 l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp GGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 777778888999999999999999998766554443333 5889999999999999999999999999876543322333
Q ss_pred --HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 458 --PMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 458 --~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
..+++.|+.+|+.++ ..+..++.++|..|...
T Consensus 398 ~~~g~i~~L~~LL~~~d--~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKD--TKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCC--HHHHHHHHHHHHHHHHH
Confidence 257889999998766 78899999999988653
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.46 E-value=5.8e-12 Score=136.90 Aligned_cols=343 Identities=15% Similarity=0.212 Sum_probs=212.1
Q ss_pred chHHHHHHHHHHHHHhh--hc--hhhh-HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHH
Q psy9904 73 WNLRKCSAAALDVLANV--FR--EELL-PVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLIT 145 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~--~~--~~vl-~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~ 145 (592)
-..+..|..++-.+... -+ +.++ .-++|.|.++++ +.++..+..|+.+|+.++.+..+.....+ ...+|.|+.
T Consensus 90 ~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~ 169 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 169 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 34555566666554321 12 1232 236677767775 45688999999999999988765433222 468999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchh-----hHHHHHHHh
Q psy9904 146 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKK-----ALVRAITCW 220 (592)
Q Consensus 146 ~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~-----~~vr~~a~~ 220 (592)
+|+++++.||..|+|||++++..-.. ....+ .. ...+|.+..++.+.. ..+...++|
T Consensus 170 LL~s~~~~v~e~A~~aL~nLa~~~~~------~r~~i---~~---------~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 170 LLASPHAHISEQAVWALGNIAGAGSA------FRDLV---IK---------HGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHH------HHHHH---HH---------TTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhccCHH------HHHHH---HH---------cCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 99999999999999999999853211 11110 00 123344444443221 112233444
Q ss_pred hhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHH
Q psy9904 221 TLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLEC 299 (592)
Q Consensus 221 ~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~ 299 (592)
++.++++ ... ..........++|.|.+.+. .++.++ ..++.|
T Consensus 232 ~L~nl~~---------------------------------~~~-~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~a~~a 274 (529)
T 3tpo_A 232 TLSNLCR---------------------------------NKN-PAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHC---------------------------------CCT-TCCCHHHHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHh---------------------------------ccc-chhhHHHHhhHHHHHHHHhc---CCcHHHHHHHHHH
Confidence 4444321 100 11111234566777776543 233333 456677
Q ss_pred HHHHHHHHhhccccccHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCch
Q psy9904 300 LSSVATALQAGFLPYCEPVY-RRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNI 378 (592)
Q Consensus 300 l~~ia~~~g~~f~py~~~v~-~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l 378 (592)
|+.++....... ..+. ..+++.|...+. .++...+..++.+++.++.+-.......+. ...
T Consensus 275 L~~l~~~~~~~~----~~v~~~g~i~~Lv~lL~-------------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~ 336 (529)
T 3tpo_A 275 ISYLTDGPNERI----EMVVKKGVVPQLVKLLG-------------ATELPIVTPALRAIGNIVTGTDEQTQKVID-AGA 336 (529)
T ss_dssp HHHHHSSCHHHH----HHHHTTTCHHHHHHHHT-------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTG
T ss_pred HHHhhhhhhhhH----HHHHhccchHHHHHHhc-------------CCChhHHHHHHHHHHHHHccchHHHHHHhh-ccc
Confidence 776664211100 0000 011222333331 124566778888888887654433333332 467
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
++.+..++++++..+|..|+.+|+.++..........+. .++|.++..+.+.+..++..|+|+|+.++.....+-..++
T Consensus 337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 788889999999999999999999999766555444333 5889999999999999999999999999876543322333
Q ss_pred -H-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 458 -P-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 458 -~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
. .+++.|+.+|..++ ..+..++..+|..|..
T Consensus 417 ~~~g~i~~L~~LL~~~d--~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKD--TKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhcCCC--HHHHHHHHHHHHHHHH
Confidence 2 47889999998766 7888899999888764
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.42 E-value=7.1e-11 Score=131.82 Aligned_cols=346 Identities=13% Similarity=0.074 Sum_probs=227.7
Q ss_pred chHHHHHHHHHHHHHhhhc--hhhh--HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhc------------hh---
Q psy9904 73 WNLRKCSAAALDVLANVFR--EELL--PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNG------------MV--- 133 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~--~~vl--~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~------------i~--- 133 (592)
..+|+.|+.+|..|+.... ..+. ..++|.|-+++++++....+.|+.+|+.++.+..+. ..
T Consensus 393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v 472 (810)
T 3now_A 393 KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472 (810)
T ss_dssp SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence 3489999999999997655 2333 457777777888889999999999999999865200 00
Q ss_pred ---------hhH---------hhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccc
Q psy9904 134 ---------PHL---------NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPH 195 (592)
Q Consensus 134 ---------~~l---------~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~ 195 (592)
.+. ...+|.|+.+|+++++.||..|+|+|++++..- ++-..++.
T Consensus 473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~------~~r~~Vv~------------ 534 (810)
T 3now_A 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK------ELRGKVVQ------------ 534 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH------HHHHHHHH------------
T ss_pred ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH------HHHHHHHH------------
Confidence 011 258999999999999999999999999998421 11111111
Q ss_pred hhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhh
Q psy9904 196 LNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLL 275 (592)
Q Consensus 196 l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~l 275 (592)
...+|.|..++.+....++..|+|+|.+++.... .. ..+.. ......
T Consensus 535 -~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~---------------p~----------------~~~~~-~~~~~a 581 (810)
T 3now_A 535 -EGGVKALLRMALEGTEKGKRHATQALARIGITIN---------------PE----------------VSFSG-QRSLDV 581 (810)
T ss_dssp -TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---------------HH----------------HHTTT-HHHHHT
T ss_pred -CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC---------------hh----------------hhhcc-hhhhcH
Confidence 3456666666665566678889999887642110 00 00000 112236
Q ss_pred hHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHH
Q psy9904 276 MPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYR-RCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIV 353 (592)
Q Consensus 276 mp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~-~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ 353 (592)
+|+|++.+.. +.+.. .+.++.||+.++..-.. . ...++. ..++.|...+.. +....+..
T Consensus 582 IppLv~LL~~--~~~~l~~~eAl~AL~NLa~~~d~-~---~~~Ii~aG~l~~Lv~LL~s-------------~~~~Vq~~ 642 (810)
T 3now_A 582 IRPLLNLLQQ--DCTALENFESLMALTNLASMNES-V---RQRIIKEQGVSKIEYYLME-------------DHLYLTRA 642 (810)
T ss_dssp HHHHHHTTST--TSCHHHHHHHHHHHHHHTTSCHH-H---HHHHHHTTHHHHHHHHHHS-------------CCTTHHHH
T ss_pred HHHHHHHhCC--CCcHHHHHHHHHHHHHHhcCCHH-H---HHHHHHcCCHHHHHHHHcC-------------CCHHHHHH
Confidence 7888875531 11111 13566677766643111 0 111111 122333333321 13457788
Q ss_pred HHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCCCC
Q psy9904 354 ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNPDL 431 (592)
Q Consensus 354 ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~~~ 431 (592)
++.+|+.++..-. ....++.....++.++.+++..+..+|+.|..+|+.++..........+. ..+|.|+..+..++
T Consensus 643 A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 643 AAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 9999999986432 23344432568999999999999999999999999999876655555554 68999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCchhhhhHH--HHHHHHHHHHcCCC-CCchHHHHHHHHHHHhhh
Q psy9904 432 ISVCNNATWAIGEISVKLGEDMRRYVP--MVINQLIIIINRPN-TPKTLLENTAITIGRLGY 490 (592)
Q Consensus 432 ~~v~~~A~~~Lg~ia~~~~~~~~p~~~--~il~~L~~~l~~~~-~~~~v~~na~~~lgrl~~ 490 (592)
.+++..|+|+++.++... .+...++- ..++.|..+++.++ .+..+.+.|..++..+..
T Consensus 722 ~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 722 PAVQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 999999999999998643 33333332 57888888887653 246788888887776653
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.41 E-value=8.7e-11 Score=133.36 Aligned_cols=371 Identities=13% Similarity=0.100 Sum_probs=228.1
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHHhccC-
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLITCLSD- 149 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~~L~D- 149 (592)
...+|++++..+...... .+....+|.|..++.++++.+|+.|+.+|+.++........ ...+.+++.|+..|++
T Consensus 128 ~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~ 204 (780)
T 2z6g_A 128 SQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 204 (780)
T ss_dssp SCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC
Confidence 356888888887755321 23345566666667788999999999999999975432111 1235789999999975
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhh
Q psy9904 150 KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229 (592)
Q Consensus 150 ~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~ 229 (592)
+++.+|..|+++|..++..- .....+ .. ...+|.|..++++.+..++..|+++|.+++...
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~------~~~~~i----~~---------~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHR------EGLLAI----FK---------SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSH------HHHHHH----HH---------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhCCc------hhHHHH----HH---------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 48999999999999987531 111111 11 246777788888777888888888888764210
Q ss_pred ccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHH-
Q psy9904 230 VSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATA- 306 (592)
Q Consensus 230 ~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~- 306 (592)
.+.+. .+. ..++|.|++.+. +++.+ ...+..|+..++..
T Consensus 266 ----------------~~~~~-------------------~v~~~g~v~~Lv~lL~---~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 266 ----------------EGAKM-------------------AVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp ----------------TTHHH-------------------HHHHTTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTC
T ss_pred ----------------hhhHH-------------------HHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCC
Confidence 00000 111 244667776543 22222 23455666655521
Q ss_pred --HhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH
Q psy9904 307 --LQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ 384 (592)
Q Consensus 307 --~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~ 384 (592)
....+.. . ..++.+...+.. .........++.++..++.. .......+ ....++.++.
T Consensus 308 ~e~~~~i~~--~----~~i~~Lv~lL~~------------~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~-~~g~l~~Ll~ 367 (780)
T 2z6g_A 308 QESKLIILA--S----GGPQALVNIMRT------------YTYEKLLWTTSRVLKVLSVC-SSNKPAIV-EAGGMQALGL 367 (780)
T ss_dssp HHHHHHHHT--T----THHHHHHHHHTT------------CCCHHHHHHHHHHHHHHHTS-TTHHHHHH-HTTHHHHHGG
T ss_pred hHHHHHHHH--c----CCHHHHHHHHhc------------CCHHHHHHHHHHHHHHhhcC-hHHHHHHH-HhchHHHHHH
Confidence 0011110 0 112222333311 11233344566667766642 22222222 2567889999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHH
Q psy9904 385 CMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQ 463 (592)
Q Consensus 385 ~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~ 463 (592)
.+.+.+..+++.+..+|..++...... .....++|.|++.+.+.+..++.+|+|+|+.++..........+ ...++.
T Consensus 368 lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 445 (780)
T 2z6g_A 368 HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 445 (780)
T ss_dssp GTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 999989999999999999999766442 23467899999999999999999999999999754322211111 246788
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc------------hHhHhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 464 LIIIINRPNTPKTLLENTAITIGRLGYVCPHD------------VAPLCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 464 L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~------------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
|+.++.++.....+++.++++||.|+..+++. +.+++..|..-.+..-+..|...|+++..
T Consensus 446 Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 446 LVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 88888753323489999999999998665541 11133333321111336678888888874
No 44
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.40 E-value=8.6e-11 Score=133.39 Aligned_cols=405 Identities=13% Similarity=0.078 Sum_probs=229.4
Q ss_pred cchHHHHHHHHHHHHHhhhch--hhh--HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchh--chhhhHhhHHHHHH
Q psy9904 72 DWNLRKCSAAALDVLANVFRE--ELL--PVLLPILKETLF-HHDWEIKESGILALGAIAEGCMN--GMVPHLNELVPFLI 144 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~--~vl--~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~--~i~~~l~~lvp~l~ 144 (592)
+..+|..|+.+|..|+..... .+. +.+++.|.+.++ +.++.+|+.|+.+|..++..... .+. -...+|.|+
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~--~~g~I~~Lv 240 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF--KSGGIPALV 240 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH--HcCCHHHHH
Confidence 467999999999999975442 222 356666666665 45899999999999998865321 111 136899999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
+.|+++++.||..|+|+|++++..-.. .-..+.. ...+|.|..++.+.+..++..++.+|..
T Consensus 241 ~lL~~~~~~v~~~A~~aL~nLa~~~~~-----~~~~v~~-------------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 241 NMLGSPVDSVLFHAITTLHNLLLHQEG-----AKMAVRL-------------AGGLQKMVALLNKTNVKFLAITTDCLQI 302 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTT-----HHHHHHH-------------TTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCChh-----hHHHHHH-------------cCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999976321 0000100 2455666666665555666666666665
Q ss_pred hhhhh-------ccCCcccchHHHHHhhh---hHHHHHHHHHHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCcc-
Q psy9904 225 YSHWV-------VSQPHDSYLKPLMTEHK---NLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKD- 292 (592)
Q Consensus 225 ~a~~~-------~~~~~~~y~~~~~~~~~---~l~~~~dai~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~- 292 (592)
++... ......+.+..++.... ....+..++..++.. .... +..+ ..++|.|+..+. +.+..
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~-~~i~~~g~l~~Ll~lL~---~~~~~~ 376 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNK-PAIVEAGGMQALGLHLT---DPSQRL 376 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TTHH-HHHHHTTHHHHHGGGTT---CSCHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hHHH-HHHHHhchHHHHHHHHc---CCchHH
Confidence 44210 00000111111111100 011223333333321 1110 0111 234566665442 22222
Q ss_pred chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhh
Q psy9904 293 LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSL 372 (592)
Q Consensus 293 ~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~ 372 (592)
+..+..++..++..... + .-...+ ++.|...+. .++.+.+..++.+|+.++..-.......
T Consensus 377 ~~~a~~~L~~L~~~~~~-~-~~~~~~----i~~Lv~lL~-------------~~d~~vr~~A~~aL~~L~~~~~~~~~~i 437 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATK-Q-EGMEGL----LGTLVQLLG-------------SDDINVVTCAAGILSNLTCNNYKNKMMV 437 (780)
T ss_dssp HHHHHHHHHHHHTTCTT-C-SCCHHH----HHHHHHHTT-------------CSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhccchh-h-hhhhhH----HHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 24566667666654322 1 112333 344444331 1356778888889998876533322222
Q ss_pred hccCchHHHHHHHhCCC-C-hHHHHHHHHHHHHHHHHchhh--hhh--hhhhHHHHHHhccCCCCh-hHHHHHHHHHHHH
Q psy9904 373 VSNSNIMHLLYQCMQDP-M-PEVRQSSFALLGDLTKACFSH--VHP--CISDFMPILGQNLNPDLI-SVCNNATWAIGEI 445 (592)
Q Consensus 373 ~~~~~l~~~l~~~l~~~-~-~~vR~~a~~~l~~la~~~~~~--~~~--~l~~llp~l~~~l~~~~~-~v~~~A~~~Lg~i 445 (592)
+ ....++.++..+.+. + ..+|..|+.+|+.|+...++. ... .-...+|.|++.+..+.. .++..|+|+|+.+
T Consensus 438 ~-~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nL 516 (780)
T 2z6g_A 438 C-QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516 (780)
T ss_dssp H-TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2 245677777777652 2 489999999999997543321 111 123568889999887764 8999999999999
Q ss_pred HHhcCchhhhhHH-HHHHHHHHHHcCCC--------------------CCchHHHHHHHHHHHhhhhC--------CCch
Q psy9904 446 SVKLGEDMRRYVP-MVINQLIIIINRPN--------------------TPKTLLENTAITIGRLGYVC--------PHDV 496 (592)
Q Consensus 446 a~~~~~~~~p~~~-~il~~L~~~l~~~~--------------------~~~~v~~na~~~lgrl~~~~--------~~~~ 496 (592)
+..- ..-..... .+++.|+.+|.+.+ ....++++++.+|+.++... ...+
T Consensus 517 a~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i 595 (780)
T 2z6g_A 517 ALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI 595 (780)
T ss_dssp HSSH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCH
T ss_pred hcCH-HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcH
Confidence 8522 11111221 45666666664321 11357788999999986310 1123
Q ss_pred HhHhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 497 APLCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 497 ~p~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
.+++..|.. .+..-+..|..+|+.+..
T Consensus 596 ~~Lv~lL~~-~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 596 PLFVQLLYS-PIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp HHHHHGGGC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 334444432 222236667788887763
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=2e-10 Score=126.80 Aligned_cols=451 Identities=10% Similarity=0.115 Sum_probs=258.1
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhh--cCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETL--FHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l--~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
-.+|-.|.++|+.+. .+++.+.++|.+.+.+ .|+++.+|+.|++++..+....++.+.. +.+++.+.++|.|+
T Consensus 125 ~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 125 PTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQ 199 (621)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCC
Confidence 346766666666653 3567888888888888 8889999999999999998876654432 46788888888999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHcccc-CCc--cchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhh
Q psy9904 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN-GMV--PHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227 (592)
Q Consensus 151 ~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~-~~v--q~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~ 227 (592)
++.|+.+|+.+|..++..-.. ....+++.++..|-+.+. +.. +.+ .. -.-+.+..+......+..|+.
T Consensus 200 d~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~------~~--~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 200 HLGVVTAATSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDY------TY--YFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTT------EE--TTEESHHHHHHHHHHGGGSSS
T ss_pred CccHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccch------hh--cCCCCchHHHHHHHHHHHhCC
Confidence 999999999988888764321 112233333332221110 000 000 00 000022333333333344431
Q ss_pred hhccC---CcccchHHHHH-----------hhhhH--HHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCc
Q psy9904 228 WVVSQ---PHDSYLKPLMT-----------EHKNL--LILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK 291 (592)
Q Consensus 228 ~~~~~---~~~~y~~~~~~-----------~~~~l--~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~ 291 (592)
.-.++ ....++..+++ +.+|- ..+|.|+.++... ++ .++++...+..|...+. ..++
T Consensus 271 ~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l-~~---~~~~~~~~~~~L~~~L~---~~~~ 343 (621)
T 2vgl_A 271 PEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH-DS---EPNLLVRACNQLGQFLQ---HRET 343 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHSS---CSCH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhc-CC---cHHHHHHHHHHHHHHhc---CCCc
Confidence 10000 00011111221 11232 4667777776543 21 24666666777665432 3344
Q ss_pred cc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhH
Q psy9904 292 DL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID 370 (592)
Q Consensus 292 ~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~ 370 (592)
++ +.++.++..++...+. ...+......+..++. .++|..++..+++++..++.. .++
T Consensus 344 niry~aL~~l~~l~~~~~~------~~~~~~~~~~i~~~L~------------~d~d~~Ir~~aL~lL~~l~~~--~Nv- 402 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFS------HEAVKTHIETVINALK------------TERDVSVRQRAVDLLYAMCDR--SNA- 402 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTT------HHHHHTTHHHHHHHHT------------TCCCHHHHHHHHHHHHHHCCH--HHH-
T ss_pred chHHHHHHHHHHHHhccCc------HHHHHHHHHHHHHHhc------------cCCCHhHHHHHHHHHHHHcCh--hhH-
Confidence 54 6788888888754321 1222233334444442 023577888899998888643 223
Q ss_pred hhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC
Q psy9904 371 SLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450 (592)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~ 450 (592)
..++..+...+.+.+.++|..++..++.++..+.+.+..|++.++..+-.. ...+...++..+..+....+
T Consensus 403 -----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 403 -----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp -----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCCh
Confidence 345666667777778999999999999999888777777777766666432 22244555566666654433
Q ss_pred chhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC--chHh--Hhhhccc---CCCchHhHHHHHHHHHHH
Q psy9904 451 EDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH--DVAP--LCSSLRN---IRDNEEKDSAFRGMCAMI 523 (592)
Q Consensus 451 ~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~--~~~p--~~~~L~~---~~d~~Ek~~a~~~l~~li 523 (592)
+++.| .+..+...+..+.....+...++|.+|.-+...++ .+.| ++..+.+ ..+..-|..++.++.++.
T Consensus 474 -~~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 474 -DVQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFV 549 (621)
T ss_dssp -SCHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred -hHHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34444 45667788887766567778888999999864322 2323 3333321 223334788889999988
Q ss_pred hhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCH
Q psy9904 524 TVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPD 580 (592)
Q Consensus 524 ~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~ 580 (592)
...|.. .+.+..++.......+.+.|+++.....++-++... ++.-..+++.+||
T Consensus 550 ~~~p~~-~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~-~~~~~~vl~~~P~ 604 (621)
T 2vgl_A 550 NLFPEV-KATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAS-TDILATVLEEMPP 604 (621)
T ss_dssp HHCGGG-HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSC-STTTTTTSSSCCC
T ss_pred HHChHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCH-HHHHHHHhhcCCC
Confidence 877752 333333333222113567788876665555444321 1223445666664
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.37 E-value=4.2e-10 Score=125.22 Aligned_cols=406 Identities=14% Similarity=0.072 Sum_probs=231.5
Q ss_pred chHHHHHHHHHHHHHhhhch--hhh--HhHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904 73 WNLRKCSAAALDVLANVFRE--ELL--PVLLPILKETLFH-HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL 147 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~--~vl--~~ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L 147 (592)
..+|..|+.+|..++..... .++ +.+++.+.+.+.+ +++.+|..|+.+|..++........-.-...+|.|++.|
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 107 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHH
Confidence 57999999999999986542 222 3456666666665 478999999999998886533111111236899999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhh
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~ 227 (592)
+++++.||..|+++|.+++..-.+ ....+.. ...+|.|..++++.+..++..++.+|.+++.
T Consensus 108 ~~~~~~v~~~A~~aL~nL~~~~~~-----~~~~v~~-------------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 108 GSPVDSVLFYAITTLHNLLLHQEG-----AKMAVRL-------------AGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSTT-----HHHHHHH-------------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHHhCcch-----hHHHHHH-------------CCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999975321 1111110 3456666677766566666666667766653
Q ss_pred hhc-------cCCcccchHHHHHhh---hhHHHHHHHHHHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCccc-hH
Q psy9904 228 WVV-------SQPHDSYLKPLMTEH---KNLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKDL-FP 295 (592)
Q Consensus 228 ~~~-------~~~~~~y~~~~~~~~---~~l~~~~dai~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~~-~~ 295 (592)
... .....+.+..++... +....+..++..++. .+... ...+ ...++.|+..+. +.+..+ ..
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~-~~l~~~g~l~~L~~ll~---~~~~~~~~~ 243 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNK-PAIVEAGGMQALGLHLT---DPSQRLVQN 243 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHH-HHHHHTTHHHHHHTTTT---CSCHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccH-HHHHHCCCHHHHHHHHh---cCCHHHHHH
Confidence 110 000011111111110 011122333333331 11110 0111 234666665432 222222 45
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhcc
Q psy9904 296 LLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSN 375 (592)
Q Consensus 296 ~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~ 375 (592)
++.+|+.++..... + .....+ ++.|...+. .++.+.+..++.+|+.++..-.......++
T Consensus 244 a~~~L~nL~~~~~~-~-~~~~~~----i~~Lv~lL~-------------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~- 303 (644)
T 2z6h_A 244 CLWTLRNLSDAATK-Q-EGMEGL----LGTLVQLLG-------------SDDINVVTCAAGILSNLTCNNYKNKMMVCQ- 303 (644)
T ss_dssp HHHHHHHHGGGCTT-C-CSCHHH----HHHHHHHTT-------------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HHHHHHHHhhcchh-h-hhhhhH----HHHHHHHHc-------------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 66677776643221 1 122333 344444331 124677888889999887653322222222
Q ss_pred CchHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHchh--hhhh--hhhhHHHHHHhccCCCC-hhHHHHHHHHHHHHHHh
Q psy9904 376 SNIMHLLYQCMQDP--MPEVRQSSFALLGDLTKACFS--HVHP--CISDFMPILGQNLNPDL-ISVCNNATWAIGEISVK 448 (592)
Q Consensus 376 ~~l~~~l~~~l~~~--~~~vR~~a~~~l~~la~~~~~--~~~~--~l~~llp~l~~~l~~~~-~~v~~~A~~~Lg~ia~~ 448 (592)
...++.++..+.+. ...+|..++.+|+.++...+. .... .-...+|.+++.+.++. ..++..|+|+|+.++..
T Consensus 304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 45778888887653 279999999999999754332 1111 11357899999998765 68999999999999753
Q ss_pred cCchhhhhH-HHHHHHHHHHHcCCC--------------------CCchHHHHHHHHHHHhhhhC--------CCchHhH
Q psy9904 449 LGEDMRRYV-PMVINQLIIIINRPN--------------------TPKTLLENTAITIGRLGYVC--------PHDVAPL 499 (592)
Q Consensus 449 ~~~~~~p~~-~~il~~L~~~l~~~~--------------------~~~~v~~na~~~lgrl~~~~--------~~~~~p~ 499 (592)
-.. ....+ ..+++.|+.++.+.+ ....++++++.+++.++... ...+.++
T Consensus 384 ~~~-~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 462 (644)
T 2z6h_A 384 PAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462 (644)
T ss_dssp GGG-HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred HHH-HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHH
Confidence 221 12222 246667777665421 12456778888888776421 1123335
Q ss_pred hhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 500 CSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 500 ~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
+..|.. .+.+-+..|..+|+.+..
T Consensus 463 v~lL~~-~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 463 VQLLYS-PIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 555432 222225667777777664
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=3.1e-10 Score=122.94 Aligned_cols=367 Identities=14% Similarity=0.086 Sum_probs=207.3
Q ss_pred chHHHHHHHHHHHHHhhhch--hhh--HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhh-hHhhHHHHHHHh
Q psy9904 73 WNLRKCSAAALDVLANVFRE--ELL--PVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVP-HLNELVPFLITC 146 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~--~vl--~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~-~l~~lvp~l~~~ 146 (592)
..+|..|+.+|..++..-.. .++ +..++.+.+.++ +++|.+|..|+.+|+.++.... .... .-...+|.+++.
T Consensus 31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~~l 109 (529)
T 1jdh_A 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKM 109 (529)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHHHH
Confidence 56899999999999975432 222 245666666665 4589999999999999886432 1111 123689999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904 147 LSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226 (592)
Q Consensus 147 L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a 226 (592)
|+++++.||..|+|+|++++..-.. ... .+.. ...+|.+..++.+++..++..++.+|..++
T Consensus 110 L~~~~~~v~~~a~~~L~~l~~~~~~--~~~---~i~~-------------~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 110 LGSPVDSVLFYAITTLHNLLLHQEG--AKM---AVRL-------------AGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHCTT--HHH---HHHH-------------HTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCcc--hHH---HHHH-------------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999975321 000 0000 345666667776666667777777776654
Q ss_pred hhh-------ccCCcccchHHHHHhhh---hHHHHHHHHHHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCccc-h
Q psy9904 227 HWV-------VSQPHDSYLKPLMTEHK---NLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKDL-F 294 (592)
Q Consensus 227 ~~~-------~~~~~~~y~~~~~~~~~---~l~~~~dai~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~~-~ 294 (592)
... ......+.+...+.... ....+..++..++. .++.. ...+ ...+|.|+..+. +.+..+ .
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~-~~~~~~g~~~~L~~ll~---~~~~~~~~ 245 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNK-PAIVEAGGMQALGLHLT---DPSQRLVQ 245 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--STTHH-HHHHHTTHHHHHHTTTT---SSCHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc--CcccH-HHHHHCCCHHHHHHHHh---CCChHHHH
Confidence 311 00001111111221110 01122223333321 11110 0111 245666665432 333332 4
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhc
Q psy9904 295 PLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374 (592)
Q Consensus 295 ~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~ 374 (592)
.+..+++.++..... .. ....+ ++.+.+.+. .++.+.+..++.+++.++..-......+.+
T Consensus 246 ~a~~~L~~l~~~~~~-~~-~~~~~----i~~L~~ll~-------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 306 (529)
T 1jdh_A 246 NCLWTLRNLSDAATK-QE-GMEGL----LGTLVQLLG-------------SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306 (529)
T ss_dssp HHHHHHHHHHTTCTT-CS-CCHHH----HHHHHHHTT-------------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCChh-hH-HHHhH----HHHHHHHHc-------------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 566667766654221 11 22333 344444331 135677888888998887643223222332
Q ss_pred cCchHHHHHHHhCC--CChHHHHHHHHHHHHHHHHchhh--hhhh--hhhHHHHHHhccCCCC-hhHHHHHHHHHHHHHH
Q psy9904 375 NSNIMHLLYQCMQD--PMPEVRQSSFALLGDLTKACFSH--VHPC--ISDFMPILGQNLNPDL-ISVCNNATWAIGEISV 447 (592)
Q Consensus 375 ~~~l~~~l~~~l~~--~~~~vR~~a~~~l~~la~~~~~~--~~~~--l~~llp~l~~~l~~~~-~~v~~~A~~~Lg~ia~ 447 (592)
...++.++..+.+ .++.+|..++.+|+.++...+.. .... -...+|.+++.+.++. ..++..|+|+++.++.
T Consensus 307 -~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 307 -VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp -TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred -cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 4567777777764 34799999999999997643321 1111 1246889999998776 5899999999999985
Q ss_pred hcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q psy9904 448 KLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGR 487 (592)
Q Consensus 448 ~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgr 487 (592)
.- ..-..++. .+++.|+.++.+++ ..++..++|+++.
T Consensus 386 ~~-~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~n 423 (529)
T 1jdh_A 386 CP-ANHAPLREQGAIPRLVQLLVRAH--QDTQRRTSMGGTQ 423 (529)
T ss_dssp SG-GGHHHHHHTTHHHHHHHHHHHHH--HHHC---------
T ss_pred Ch-hhhHHHHHcCCHHHHHHHHHHHh--HHHHHHHhcccCc
Confidence 32 22222332 57788888876533 4555555555554
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.34 E-value=1.1e-10 Score=129.97 Aligned_cols=350 Identities=13% Similarity=0.080 Sum_probs=217.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
.+|.+..+++++++.+|+.|+.+|+.++........ -..+.+++.+++.|++. ++.+|..|+.+|..++..-
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~------ 88 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------ 88 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh------
Confidence 455566667889999999999999999986542111 11246889999999864 8999999999999876421
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHH
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAI 255 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai 255 (592)
+.. ..+.+ ...+|.|..++++.+..++..++++|.+++... .....
T Consensus 89 ~~~----~~i~~---------~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~---------------~~~~~------ 134 (644)
T 2z6h_A 89 EGL----LAIFK---------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ---------------EGAKM------ 134 (644)
T ss_dssp HHH----HHHHT---------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS---------------TTHHH------
T ss_pred hhH----HHHHH---------cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc---------------chhHH------
Confidence 111 11111 346777778887777788888888887764210 00000
Q ss_pred HHHHHHhcccCCChhhH-hhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHH-HHHHHHHHHHHHH
Q psy9904 256 GTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVY-RRCVSLIEQTLNQ 332 (592)
Q Consensus 256 ~~la~~~g~~~~~~~y~-~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~-~~~~~~l~~~l~~ 332 (592)
.+. ...+|.|++.+.. .+.+. ..+..||..++...... ...+. ...++.+...+..
T Consensus 135 --------------~v~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~La~~~~~~----~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 135 --------------AVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAYGNQES----KLIILASGGPQALVNIMRT 193 (644)
T ss_dssp --------------HHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTCHHH----HHHHHHTTHHHHHHHHHTT
T ss_pred --------------HHHHCCChHHHHHHHCc---CCHHHHHHHHHHHHHHHhcCcHH----HHHHHHcCChHHHHHHHHc
Confidence 111 3456777765532 22222 34556777766421110 00000 0112333333311
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 333 HMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
. .....+..++.++..++.. ......+.....++.+...+++.+..+|+.+..+|+.++......
T Consensus 194 -------~-----~~~~~~~~a~~~L~nLs~~--~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~- 258 (644)
T 2z6h_A 194 -------Y-----TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 258 (644)
T ss_dssp -------C-----CCHHHHHHHHHHHHHHTTC--TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-
T ss_pred -------C-----ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-
Confidence 1 1234455666777666532 222333322467889999999989999999999999998765432
Q ss_pred hhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhh
Q psy9904 413 HPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 413 ~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~ 491 (592)
.....++|.|++.+.+++..++.+|+|+|+.++..........+ ...++.|+.++.+......++.+++.+||.++..
T Consensus 259 -~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 259 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp -CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 23567899999999999999999999999999864322211122 2467888888876433368999999999999866
Q ss_pred CCCc------------hHhHhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 492 CPHD------------VAPLCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 492 ~~~~------------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
+++. +.+++..|..-.+..-+..|...++++..
T Consensus 338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 5531 11133333221122336778888887764
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.33 E-value=1e-09 Score=128.92 Aligned_cols=422 Identities=13% Similarity=0.126 Sum_probs=238.9
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch----------------hchhhhH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM----------------NGMVPHL 136 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~----------------~~i~~~l 136 (592)
..+|+..+.++..++..-.++-||.+++.+.+.++ .+...++.++.+|+.+.|-.. +.+..++
T Consensus 114 ~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~ 192 (1049)
T 3m1i_C 114 KNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 46899999999999987444678889998888876 566789999999999997544 3356778
Q ss_pred hhHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHH
Q psy9904 137 NELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVR 215 (592)
Q Consensus 137 ~~lvp~l~~~L~D~-~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr 215 (592)
+.+++.+...|++. ++.++..++.|++.+..|+.... -+-.++++.+++.+ +. ...++
T Consensus 193 ~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~--~~~~~ll~~l~~~~-----------------l~--~~~~~ 251 (1049)
T 3m1i_C 193 EQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY--IYETNILELLSTKF-----------------MT--SPDTR 251 (1049)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH--HHSSSHHHHHHTHH-----------------HH--SHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH--HhhhhHHHHHHHHh-----------------CC--CHhHH
Confidence 88999988888754 57899999999999888864210 00011222222111 00 11112
Q ss_pred HHHHhhhhhhhhhhccCC---cccch----HHHHHh----------------------hhh-HHHHHHHHHHHHHHhccc
Q psy9904 216 AITCWTLSRYSHWVVSQP---HDSYL----KPLMTE----------------------HKN-LLILYDAIGTLADSVGHH 265 (592)
Q Consensus 216 ~~a~~~L~~~a~~~~~~~---~~~y~----~~~~~~----------------------~~~-l~~~~dai~~la~~~g~~ 265 (592)
..++.+|..+...-.... +...+ ..++.. ... ...+...+..+++.....
T Consensus 252 ~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 331 (1049)
T 3m1i_C 252 AITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL 331 (1049)
T ss_dssp HHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211110000000 00000 000000 000 011222222222211111
Q ss_pred CC----ChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHH--hhccccccHHHHHHHHHHHHHHHHHHHh---
Q psy9904 266 LN----KPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATAL--QAGFLPYCEPVYRRCVSLIEQTLNQHMA--- 335 (592)
Q Consensus 266 ~~----~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~--g~~f~py~~~v~~~~~~~l~~~l~~~~~--- 335 (592)
+. ..+++..+++.+++... .++.++ ..+++.|..++..+ .......+.+++.++++.+...+.....
T Consensus 332 ~~~~~~~~~~l~~~l~~ll~~~~---~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~ 408 (1049)
T 3m1i_C 332 LESDESLRELLLNAHQYLIQLSK---IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV 408 (1049)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCE
T ss_pred HcCChhhHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceee
Confidence 10 01456666777766432 122232 45677777777744 2233334455555555554443310000
Q ss_pred hcCCCCC---CCCCCh---hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC--CCChHHHHHHHHHHHHHHHH
Q psy9904 336 NSQNPEQ---FDAPDK---DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ--DPMPEVRQSSFALLGDLTKA 407 (592)
Q Consensus 336 ~~~~~~~---~~~~d~---~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~--~~~~~vR~~a~~~l~~la~~ 407 (592)
..+++.+ ...+|. ..+..+-++|..++...+....++ +++.+...++ ..+...|++++-++|.++..
T Consensus 409 ~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~-----v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 409 VENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp EECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred eeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 0000000 000111 234456677777776555544443 3555555554 35678999999999999877
Q ss_pred chhhh-hhhhhhHHHHHHhccC-----CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHH
Q psy9904 408 CFSHV-HPCISDFMPILGQNLN-----PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENT 481 (592)
Q Consensus 408 ~~~~~-~~~l~~llp~l~~~l~-----~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na 481 (592)
+.... .++++.+++.+..... ++.+-++..++|++|.++.-.... ..|++.+++.++..+.+++ ..|+..|
T Consensus 484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~--~~V~~~A 560 (1049)
T 3m1i_C 484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETH--EGVQDMA 560 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSC--HHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCC--HHHHHHH
Confidence 65542 4568888888776332 234556668999999887654432 3588889999998887654 8899999
Q ss_pred HHHHHHhhhhCCCchH--------hHhh----hcc---cCCCchHhHHHHHHHHHHHhhCc
Q psy9904 482 AITIGRLGYVCPHDVA--------PLCS----SLR---NIRDNEEKDSAFRGMCAMITVNP 527 (592)
Q Consensus 482 ~~~lgrl~~~~~~~~~--------p~~~----~L~---~~~d~~Ek~~a~~~l~~li~~~p 527 (592)
|.++.+++..++..+. |++. .|. ...+.++....+.+++.++..-|
T Consensus 561 ~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999988775543 5332 221 12345567789999999997644
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.32 E-value=7e-10 Score=120.09 Aligned_cols=351 Identities=13% Similarity=0.078 Sum_probs=214.9
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh--HhhHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH--LNELVPFLITCLSD-KKALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~--l~~lvp~l~~~L~D-~~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
..+|.+...++++++.+|+.|+.+|+.++.+.... ... .+..++.+++.|.+ +++.+|..|+++|.+++..-
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~---- 91 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---- 91 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH----
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc----
Confidence 34666666778999999999999999999765421 111 24688888888864 48999999999999986421
Q ss_pred CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
+.-..+. + ...+|.|..++++++..++..++++|.+++... .+.+ .
T Consensus 92 --~~~~~i~----~---------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----------------~~~~---~ 137 (529)
T 1jdh_A 92 --EGLLAIF----K---------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ----------------EGAK---M 137 (529)
T ss_dssp --HHHHHHH----H---------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC----------------TTHH---H
T ss_pred --hhHHHHH----H---------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----------------cchH---H
Confidence 1111111 1 356777788888777788888888887764210 0000 0
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHH-HHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYR-RCVSLIEQTLN 331 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~-~~~~~l~~~l~ 331 (592)
.+ .-...+|.|++.+. +++.+. ..+..++..++..- .+.. ..+.. ..++.+...+.
T Consensus 138 ---~i------------~~~g~i~~L~~ll~---~~~~~~~~~~~~~L~~la~~~-~~~~---~~i~~~~~i~~L~~ll~ 195 (529)
T 1jdh_A 138 ---AV------------RLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGN-QESK---LIILASGGPQALVNIMR 195 (529)
T ss_dssp ---HH------------HHHTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTC-HHHH---HHHHHTTHHHHHHHHHH
T ss_pred ---HH------------HHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhCC-HHHH---HHHHHCCCHHHHHHHHH
Confidence 00 01234666766543 222222 34455666555310 0000 00000 11233333332
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH 411 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~ 411 (592)
.. .....+..++.++..++.. ......+.....++.+...+++.+.++++.+..+|+.++...+..
T Consensus 196 ~~------------~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 261 (529)
T 1jdh_A 196 TY------------TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 261 (529)
T ss_dssp HC------------CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred hC------------ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh
Confidence 20 1233445566666666532 222232222567889999999999999999999999999765432
Q ss_pred hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 412 VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 412 ~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.....++|.+++.+.+++..++..|+|+|+.++....+.....+. ..++.|+.++.+.+.+..++.+++.+++.++.
T Consensus 262 --~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 262 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred --HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 234678999999999999999999999999997643222222222 46788888887543347899999999999987
Q ss_pred hCCCc------------hHhHhhhcccCCCchHhHHHHHHHHHHHh
Q psy9904 491 VCPHD------------VAPLCSSLRNIRDNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 491 ~~~~~------------~~p~~~~L~~~~d~~Ek~~a~~~l~~li~ 524 (592)
.+++. +.+++..|..-.+..-+..+...++++..
T Consensus 340 ~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 65541 11133333321112336667778887775
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.32 E-value=5.2e-10 Score=129.34 Aligned_cols=379 Identities=11% Similarity=0.111 Sum_probs=226.9
Q ss_pred ccchHHHHHHHHHHHHHhhhch---------hhhHhHHHHHHHhhc-----CCChhHHHHHHHHHHHHHhhchhchhhhH
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE---------ELLPVLLPILKETLF-----HHDWEIKESGILALGAIAEGCMNGMVPHL 136 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~---------~vl~~ll~~l~~~l~-----s~~~~~R~aa~~aLg~iaeg~~~~i~~~l 136 (592)
.+|..+.+|..+|..+++++.. ..+|.+++++.+.++ ++++.+|.+++..+|..++-.... ..++
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l 533 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhH
Confidence 5699999999999999998753 357788888887765 788999999999999999866532 2689
Q ss_pred hhHHHHHHH--hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccch--hh-hHHHHHHhcCchh
Q psy9904 137 NELVPFLIT--CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL--NE-LVPFLITCLSDKK 211 (592)
Q Consensus 137 ~~lvp~l~~--~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l--~~-l~p~l~~il~d~~ 211 (592)
+.+++.++. ++.+++++||.+||.++.+|++.+.+. ..+|+++++..+...+....... .+ --+.+..+..+..
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSD 612 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTT
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCC
Confidence 999999999 999999999999999999999998763 56899999888766552111000 00 0000000000000
Q ss_pred hHHHHHHHhhhhhhhhhhcc--CCc----ccchHHHHHhhh--------------hHHHHHHHHHHHHHHhcccCC-Ch-
Q psy9904 212 ALVRAITCWTLSRYSHWVVS--QPH----DSYLKPLMTEHK--------------NLLILYDAIGTLADSVGHHLN-KP- 269 (592)
Q Consensus 212 ~~vr~~a~~~L~~~a~~~~~--~~~----~~y~~~~~~~~~--------------~l~~~~dai~~la~~~g~~~~-~~- 269 (592)
..-+.....+++.++...+. +.. ...+.|++++.. .+...+.++++++......-. ..
T Consensus 613 ~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p 692 (980)
T 3ibv_A 613 FNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVA 692 (980)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCc
Confidence 00000011111111111100 000 001112221100 112345677887765432111 01
Q ss_pred --hhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy9904 270 --EYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAP 346 (592)
Q Consensus 270 --~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 346 (592)
..+..+++.++..++.... +.. +.+++.++..+...+|.++.||+++++..++ ..++
T Consensus 693 ~~~~f~~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll----~~~~--------------- 752 (980)
T 3ibv_A 693 WLASFNKASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL----NSID--------------- 752 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH----HHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH----hcCC---------------
Confidence 2344556666555544322 222 3567888999999999999999997754433 2110
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhcc--CchHHHHHHHhCCCC---------hHHHHHHHHHHHHHHHH-chhhh--
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSN--SNIMHLLYQCMQDPM---------PEVRQSSFALLGDLTKA-CFSHV-- 412 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~--~~l~~~l~~~l~~~~---------~~vR~~a~~~l~~la~~-~~~~~-- 412 (592)
-.+ ....+.+++.++...|.++.|++.. ..++..+...++.+. .++|++-+.++..+..+ +.+-+
T Consensus 753 ~~e-~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s 831 (980)
T 3ibv_A 753 MNE-LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFT 831 (980)
T ss_dssp TTT-HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGS
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcC
Confidence 112 3557889999999999887776621 223334444554321 34788888888888773 34433
Q ss_pred ---hhhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcC-c----hhhhhHHHHHHHHHHHHcCCC
Q psy9904 413 ---HPCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLG-E----DMRRYVPMVINQLIIIINRPN 472 (592)
Q Consensus 413 ---~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~-~----~~~p~~~~il~~L~~~l~~~~ 472 (592)
.++++.++..+++.-. -++..+...|+..+..++...| + .|..|+-+++|....+..+++
T Consensus 832 ~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~ 900 (980)
T 3ibv_A 832 EENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPN 900 (980)
T ss_dssp HHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC--
T ss_pred CcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCC
Confidence 3567788888876543 3567788899999999887764 2 366665557776666665554
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.31 E-value=5.6e-11 Score=117.83 Aligned_cols=253 Identities=19% Similarity=0.161 Sum_probs=163.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccch
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 178 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l 178 (592)
++.+.+.+.++++.+|..|+.+||.+.. +..+|.++..|+|+++.||..|+++|+++.. ....+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~------~~~~~ 88 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI------CKKCE 88 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC------CTTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------ccccc
Confidence 4455566789999999999999998862 4678889999999999999999999998742 11122
Q ss_pred HHHHHHHHccccCCccchhhhHHHHH-HhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHH
Q psy9904 179 KPLMTEMLGCMNGMVPHLNELVPFLI-TCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGT 257 (592)
Q Consensus 179 ~~ll~~Ll~~l~~~vq~l~~l~p~l~-~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~ 257 (592)
+. +++.+. .+++|++..||..++++|+.+..
T Consensus 89 ~~------------------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~------------------------------ 120 (280)
T 1oyz_A 89 DN------------------VFNILNNMALNDKSACVRATAIESTAQRCK------------------------------ 120 (280)
T ss_dssp HH------------------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH------------------------------
T ss_pred hH------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhc------------------------------
Confidence 22 233333 23456677888888777775421
Q ss_pred HHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhh
Q psy9904 258 LADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMAN 336 (592)
Q Consensus 258 la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~ 336 (592)
.. +.+.+.+++.|...+ .+.++.+ ..+..+++.+.. .. .++.+...+.
T Consensus 121 ---~~------~~~~~~~~~~L~~~l---~d~~~~vR~~a~~aL~~~~~---~~-----------~~~~L~~~l~----- 169 (280)
T 1oyz_A 121 ---KN------PIYSPKIVEQSQITA---FDKSTNVRRATAFAISVIND---KA-----------TIPLLINLLK----- 169 (280)
T ss_dssp ---HC------GGGHHHHHHHHHHHT---TCSCHHHHHHHHHHHHTC------C-----------CHHHHHHHHT-----
T ss_pred ---cC------CcccHHHHHHHHHHh---hCCCHHHHHHHHHHHHhcCC---HH-----------HHHHHHHHHc-----
Confidence 00 133455667776644 2444443 456666665432 11 1233333331
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh
Q psy9904 337 SQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI 416 (592)
Q Consensus 337 ~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l 416 (592)
+++..++..++..++.+. .. .+..++.+...++++++.||..++..|+.+. -
T Consensus 170 --------d~~~~vr~~a~~aL~~~~----~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~ 221 (280)
T 1oyz_A 170 --------DPNGDVRNWAAFAININK----YD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------D 221 (280)
T ss_dssp --------CSSHHHHHHHHHHHHHHT----CC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------C
T ss_pred --------CCCHHHHHHHHHHHHhhc----cC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------C
Confidence 235667777877776652 11 1345678888889999999999999998775 1
Q ss_pred hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q psy9904 417 SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGR 487 (592)
Q Consensus 417 ~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgr 487 (592)
+..+|.++..+++++ ||..|+++||.+.. +.+++.|...+++.. +..+...++.++++
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~-~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFD-DNEIITSAIDKLKR 279 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSS-CCHHHHHHHHHHTC
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCC-CcHHHHHHHHHhhc
Confidence 346666777776643 89999999998742 145666777776543 35666667666654
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.27 E-value=9.4e-10 Score=106.57 Aligned_cols=245 Identities=17% Similarity=0.155 Sum_probs=160.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 177 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~ 177 (592)
+|.+.+.++++++.+|..|+.+|+.++.+..+...... ..++|.+++.|+++++.||..|+|+|++++..-. ..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-----EA 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-----HH
Confidence 56677778889999999999999999987764333333 3699999999999999999999999999975311 11
Q ss_pred hHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHH
Q psy9904 178 LKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGT 257 (592)
Q Consensus 178 l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~ 257 (592)
-..+ .+ ...+|.+..++++.+..++..++++|++++... . +....
T Consensus 79 ~~~~----~~---------~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~----------------~------~~~~~ 123 (252)
T 4hxt_A 79 IKAI----VD---------AGGVEVLVKLLTSTDSEVQKEAARALANIASGP----------------D------EAIKA 123 (252)
T ss_dssp HHHH----HH---------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC----------------H------HHHHH
T ss_pred HHHH----HH---------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----------------H------HHHHH
Confidence 1111 11 356777888888778888888888887763100 0 00000
Q ss_pred HHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhc
Q psy9904 258 LADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANS 337 (592)
Q Consensus 258 la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~ 337 (592)
+. -...+|.|++.+. ++
T Consensus 124 ~~------------~~~~i~~L~~~l~---~~------------------------------------------------ 140 (252)
T 4hxt_A 124 IV------------DAGGVEVLVKLLT---ST------------------------------------------------ 140 (252)
T ss_dssp HH------------HTTHHHHHHHHTT---CS------------------------------------------------
T ss_pred HH------------HCCCHHHHHHHHc---CC------------------------------------------------
Confidence 00 0112333333221 11
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-
Q psy9904 338 QNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI- 416 (592)
Q Consensus 338 ~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l- 416 (592)
+.+.+..++.+|+.++..-......++. ...++.+...+++.++.+|..++.+|+.++...+.......
T Consensus 141 ---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 210 (252)
T 4hxt_A 141 ---------DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD 210 (252)
T ss_dssp ---------CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233344445555554432222222222 46788888999999999999999999999975544433333
Q ss_pred hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 417 SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 417 ~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
..+++.+++.++++++.++..|+|+|+.++...+....+|
T Consensus 211 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 211 AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 3588999999999999999999999999998766554443
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.24 E-value=3e-09 Score=117.31 Aligned_cols=370 Identities=13% Similarity=0.136 Sum_probs=206.3
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc--c
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL--S 148 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L--~ 148 (592)
.+...||.+..++..++..-+ +++-.+.+.+++-++|+++.+|-.|+.+||.+.. ..+.+.++|.+.++| .
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAG 158 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCC
Confidence 356789888888888886654 3445566777778889999999999999998854 235678889999999 8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhh
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 228 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~ 228 (592)
|++|.||..|+.|+.++....++ ... .+.+.+.+..++.|.++.|...|..++...+
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~-~~~--------------------~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~-- 215 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPD-LVP--------------------MGDWTSRVVHLLNDQHLGVVTAATSLITTLA-- 215 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGG-GCC--------------------CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHhChh-hcC--------------------chhHHHHHHHHhCCCCccHHHHHHHHHHHHH--
Confidence 99999999999999999874322 111 0134555566677777777666555554332
Q ss_pred hccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccC-----------Cccc-hHH
Q psy9904 229 VVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDE-----------DKDL-FPL 296 (592)
Q Consensus 229 ~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~-----------~~~~-~~~ 296 (592)
..-+..+. ++++.++..|.+.+.. .+- ++.. ..+
T Consensus 216 -------------------------------~~~~~~~~--~~~~~~~~~L~~ll~~-~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 216 -------------------------------QKNPEEFK--TSVSLAVSRLSRIVTS-ASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp -------------------------------HHCHHHHT--THHHHHHHHHHHHHHC-CSSSCSTTEETTEESHHHHHHH
T ss_pred -------------------------------HhChHHHH--HHHHHHHHHHHHHHhC-CCCCccchhhcCCCCchHHHHH
Confidence 11111111 2333333333322211 000 0000 122
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-hhHHHHHHHHHHHHHhhhhhhhHhhhcc
Q psy9904 297 LECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD-KDFMIVALDLLSGLAEGLDMHIDSLVSN 375 (592)
Q Consensus 297 ~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d-~~~~~~ald~l~~l~~~lg~~~~~~~~~ 375 (592)
++.++.++. . --+.....+...+...+.... +.|....... ..-....++++..+... + ...+++
T Consensus 262 l~ll~~~~~----~---~d~~~~~~l~~~L~~il~~~~---~~~ks~~l~~~n~~~aVl~ea~~~i~~l-~-~~~~~~-- 327 (621)
T 2vgl_A 262 LRLLQCYPP----P---EDPAVRGRLTECLETILNKAQ---EPPKSKKVQHSNAKNAVLFEAISLIIHH-D-SEPNLL-- 327 (621)
T ss_dssp HHHGGGSSS----C---SSHHHHHHHHHHHHHHHHHHH---SCCSCSSHHHHHHHHHHHHHHHHHHHHH-C-CCHHHH--
T ss_pred HHHHHHhCC----C---CCHHHHHHHHHHHHHHHHhhc---cCcccccccccchHHHHHHHHHHHHHhc-C-CcHHHH--
Confidence 233322211 0 001222222333333332110 0000000000 00012344555554432 2 122333
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
....+.+...+.+.++++|-.++..+..++...+. .+++....+.++.++. +++.+||..|+-.+-.++.. .
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~--- 400 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--S--- 400 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--H---
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--h---
Confidence 34566777778778899999999999998866541 1234555667777777 78889999999888777532 2
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhhcccC-C--CchHhHHHHHHHHHHHhhCch
Q psy9904 455 RYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNI-R--DNEEKDSAFRGMCAMITVNPG 528 (592)
Q Consensus 455 p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L~~~-~--d~~Ek~~a~~~l~~li~~~p~ 528 (592)
-+..++..|..-+...+ ...+..++.+||+++...+....-++..|..+ . .+.-+..+...+..++..+|.
T Consensus 401 -Nv~~Iv~eL~~yl~~~d--~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~ 474 (621)
T 2vgl_A 401 -NAQQIVAEMLSYLETAD--YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD 474 (621)
T ss_dssp -HHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS
T ss_pred -hHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh
Confidence 34556666666555433 77888899999999877664332222222221 1 111133455666666665553
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.23 E-value=7.9e-10 Score=109.46 Aligned_cols=253 Identities=18% Similarity=0.133 Sum_probs=160.4
Q ss_pred hHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHH
Q psy9904 138 ELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAI 217 (592)
Q Consensus 138 ~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~ 217 (592)
..++.++..|+|+++.||..|+++|+++.. +..+|.+...++|++..+|..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------------------------~~~~~~L~~~l~d~~~~vR~~ 73 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------------------------QDAVRLAIEFCSDKNYIRRDI 73 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------------------------HHHHHHHHHHHTCSSHHHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------------------------chHHHHHHHHHcCCCHHHHHH
Confidence 356788899999999999999999998751 123344455567778888888
Q ss_pred HHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHH
Q psy9904 218 TCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPL 296 (592)
Q Consensus 218 a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~ 296 (592)
++++|+.+. .. +..++.+++.|.+.+ +.+.+..+ ..+
T Consensus 74 A~~aL~~l~-------------------------------------~~---~~~~~~l~~~L~~~~--~~d~~~~vr~~a 111 (280)
T 1oyz_A 74 GAFILGQIK-------------------------------------IC---KKCEDNVFNILNNMA--LNDKSACVRATA 111 (280)
T ss_dssp HHHHHHHSC-------------------------------------CC---TTTHHHHHHHHHHHH--HHCSCHHHHHHH
T ss_pred HHHHHHHhc-------------------------------------cc---cccchHHHHHHHHHH--hcCCCHHHHHHH
Confidence 888776541 00 023344455554321 12344443 567
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccC
Q psy9904 297 LECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNS 376 (592)
Q Consensus 297 ~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~ 376 (592)
..+|+.+....+ ++.+.+ ++.+...+. +++...+..++..++.+.. +
T Consensus 112 ~~aL~~l~~~~~----~~~~~~----~~~L~~~l~-------------d~~~~vR~~a~~aL~~~~~------------~ 158 (280)
T 1oyz_A 112 IESTAQRCKKNP----IYSPKI----VEQSQITAF-------------DKSTNVRRATAFAISVIND------------K 158 (280)
T ss_dssp HHHHHHHHHHCG----GGHHHH----HHHHHHHTT-------------CSCHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhccCC----cccHHH----HHHHHHHhh-------------CCCHHHHHHHHHHHHhcCC------------H
Confidence 788877764321 122222 334443331 2356677777776665421 2
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
..++.+...++++++.||..+...|+.+.. .-+..+|.+.+.++++++.||..|+++||.+. .
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---~------ 221 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---D------ 221 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---C------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---C------
Confidence 357788888999999999999999987631 12457788888889999999999999999874 1
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHh-hhcccCCCchHhHHHHHHH
Q psy9904 457 VPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLC-SSLRNIRDNEEKDSAFRGM 519 (592)
Q Consensus 457 ~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~-~~L~~~~d~~Ek~~a~~~l 519 (592)
+..++.|...+++++ ++..++.++|+++. ..+.|++ ..+..-.+.+....++..+
T Consensus 222 -~~~~~~L~~~l~d~~----vr~~a~~aL~~i~~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT----VYDDIIEAAGELGD---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -GGGHHHHHHHHTSSS----CCHHHHHHHHHHCC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -HhhHHHHHHHhcCcc----HHHHHHHHHHhcCc---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 135566677776543 77889999999974 3455544 3343333443344444443
No 56
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.19 E-value=8.9e-10 Score=130.57 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=143.4
Q ss_pred cccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc-------------------------CCChhHHHHHHHHHHHH
Q psy9904 70 LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF-------------------------HHDWEIKESGILALGAI 124 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~-------------------------s~~~~~R~aa~~aLg~i 124 (592)
..-|+.||..+..+..++...|...++.+++++.+.+. ++.|..+++...+++++
T Consensus 434 ~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav 513 (1204)
T 3a6p_A 434 AFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESV 513 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 34589999999999999999998888888887755443 34588899999999999
Q ss_pred Hhhchhch-hhhHh-hHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhh
Q psy9904 125 AEGCMNGM-VPHLN-ELVPFLITCL---SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNEL 199 (592)
Q Consensus 125 aeg~~~~i-~~~l~-~lvp~l~~~L---~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l 199 (592)
++++.... .++++ .++|.+++.+ +..+|.+|..++.++|++++|+.. +.++++++++.|+..+..... .
T Consensus 514 ~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~~ll~~l~~~~~--~-- 587 (1204)
T 3a6p_A 514 ITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFSKLFSSVTFETV--E-- 587 (1204)
T ss_dssp HHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHHHHHHHHHCCTT--C--
T ss_pred HHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhccCCc--c--
Confidence 99996433 24444 2455555543 345788999999999999999874 568999999988876511000 0
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHH---------h---hhhHHHHHHHHHHHHHHhcccCC
Q psy9904 200 VPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT---------E---HKNLLILYDAIGTLADSVGHHLN 267 (592)
Q Consensus 200 ~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~---------~---~~~l~~~~dai~~la~~~g~~~~ 267 (592)
+-..--.+....+|..||.++.++++..+ +.+.||++.+.+ + .++...++++++.++..+++...
T Consensus 588 --~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~ 664 (1204)
T 3a6p_A 588 --ESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYER 664 (1204)
T ss_dssp --STTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred --cccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHH
Confidence 00000001234577888888887776543 234566654443 2 23456889999999766666555
Q ss_pred ChhhHhhhhHHHHHHHh
Q psy9904 268 KPEYISLLMPPLIQKWN 284 (592)
Q Consensus 268 ~~~y~~~lmp~L~~~~~ 284 (592)
++.|+..+++++++.|.
T Consensus 665 ~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 665 QKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 56789999999999886
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.18 E-value=9.1e-09 Score=111.05 Aligned_cols=380 Identities=14% Similarity=0.111 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhhhc-h-hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhh-HhhHHHHHHHhccCChHHH
Q psy9904 78 CSAAALDVLANVFR-E-ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPH-LNELVPFLITCLSDKKALV 154 (592)
Q Consensus 78 ~aa~~L~~la~~~~-~-~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~-l~~lvp~l~~~L~D~~~~V 154 (592)
.+...|+.+-+.-+ + .....-+|.+.++|.+++..++..|+.+|..++.+..+.-... -...+|.|+.+|+++++.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~v 106 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106 (584)
T ss_dssp -------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred chHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHH
Confidence 55567777766433 2 2334556666677788999999999999999997554321111 2357899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCc-hhhHHHHHHHhhhhhhhhhhccCC
Q psy9904 155 RAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSD-KKALVRAITCWTLSRYSHWVVSQP 233 (592)
Q Consensus 155 R~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d-~~~~vr~~a~~~L~~~a~~~~~~~ 233 (592)
|..|+|+|.+++..-. .+.-..+. . ..-+|.|..+|.. ....++..++++|.+++..
T Consensus 107 q~~Aa~AL~nLa~~~~----~~nk~~I~----~---------~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~----- 164 (584)
T 3l6x_A 107 HLGACGALKNISFGRD----QDNKIAIK----N---------CDGVPALVRLLRKARDMDLTEVITGTLWNLSSH----- 164 (584)
T ss_dssp HHHHHHHHHHHTSSSC----HHHHHHHH----H---------TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHccCC----HHHHHHHH----H---------cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-----
Confidence 9999999999984210 00001111 0 2345666666643 2445677777777665420
Q ss_pred cccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHH----hhc----------cc-CCccc-hHHH
Q psy9904 234 HDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKW----NIL----------KD-EDKDL-FPLL 297 (592)
Q Consensus 234 ~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~----~~~----------~d-~~~~~-~~~~ 297 (592)
+ ..|.. .+..-+|.|++.+ ... .+ .+.++ ..+.
T Consensus 165 --~-------~~k~~----------------------I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa 213 (584)
T 3l6x_A 165 --D-------SIKME----------------------IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213 (584)
T ss_dssp --G-------GGHHH----------------------HHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHH
T ss_pred --c-------hhhHH----------------------HHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHH
Confidence 0 11100 0011122222211 000 00 01122 3455
Q ss_pred HHHHHHHHHHhh---ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh------
Q psy9904 298 ECLSSVATALQA---GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH------ 368 (592)
Q Consensus 298 e~l~~ia~~~g~---~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~------ 368 (592)
.||..++..-.. .+.. ...+++.++.++...+.. . ..+......++-.|..+.......
T Consensus 214 ~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~-----~------~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 214 GCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQ-----K------DSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp HHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHT-----T------CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred HHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcc-----c------CccHHHHHHHHHHHHHhhccccccccchhh
Confidence 666666532111 0100 011122223333332211 0 112233444555555544332111
Q ss_pred -------------------hHhhhccCchHHHHHHHhC-CCChHHHHHHHHHHHHHHHHch---hhhhhhh--hhHHHHH
Q psy9904 369 -------------------IDSLVSNSNIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACF---SHVHPCI--SDFMPIL 423 (592)
Q Consensus 369 -------------------~~~~~~~~~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~---~~~~~~l--~~llp~l 423 (592)
+..++ ++..++.++..++ ..+..+++.|..+|..|+..-. ..+...+ ...+|.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp --------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 11112 1345677777775 3578999999999999985421 2222233 3579999
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCC------CchHHHHHHHHHHHhhhhCCCc--
Q psy9904 424 GQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNT------PKTLLENTAITIGRLGYVCPHD-- 495 (592)
Q Consensus 424 ~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~------~~~v~~na~~~lgrl~~~~~~~-- 495 (592)
++.|...+..++.+|+|+|+.++...... ...-...++.|+.+|.+++. ...+...||++++.|...+++.
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~ 439 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999754322 22345789999999987632 3567889999999998665543
Q ss_pred -------hHhHhhhcccCC-CchHhHHHHHHHHHHHh
Q psy9904 496 -------VAPLCSSLRNIR-DNEEKDSAFRGMCAMIT 524 (592)
Q Consensus 496 -------~~p~~~~L~~~~-d~~Ek~~a~~~l~~li~ 524 (592)
+.+++..|..-. ....+..|...|+.|..
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 122344443321 23346778888888875
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.18 E-value=9.7e-10 Score=106.81 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=86.6
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
..++.++..+++.+..+|..++.+|+.++..........+ ..++|.+++.+++++..++..|+|+|+.++.........
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 217 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 217 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4567777888888999999999999999975544333222 468899999999889999999999999998543333333
Q ss_pred hHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 456 YVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 456 ~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.+. .+++.|..++.+++ ..++++|+++|+.++.
T Consensus 218 ~~~~g~i~~L~~ll~~~~--~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHEN--EKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTHHHHHHTTTTCSS--SHHHHTHHHHHHTTC-
T ss_pred HHHCCcHHHHHHHhCCCC--HHHHHHHHHHHHHHhc
Confidence 333 47888999888755 7899999999999863
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.18 E-value=2.1e-08 Score=106.57 Aligned_cols=349 Identities=11% Similarity=0.066 Sum_probs=203.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh-h-hHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy9904 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMV-P-HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDS 176 (592)
Q Consensus 99 l~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~-~-~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~ 176 (592)
+|.+.++++++++..|..|+.+|+.++.+-.. .. . .-...+|.|+++|+++++.++..|+|+|.+++..-. +
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-----~ 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-----T 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-----H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-----H
Confidence 45566677888999999999999999865432 11 1 135689999999999999999999999999985311 1
Q ss_pred chHHHHHHHHccccCCccchhhhHHHHHHhcC-chhhHHHHHHHhhhhhhhhhhccC------CcccchHHHHH------
Q psy9904 177 YLKPLMTEMLGCMNGMVPHLNELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQ------PHDSYLKPLMT------ 243 (592)
Q Consensus 177 ~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~-d~~~~vr~~a~~~L~~~a~~~~~~------~~~~y~~~~~~------ 243 (592)
.-..++ + ...+|.|..+|. +.+..++..++|+|.+++.. ... ...|.+..++.
T Consensus 78 ~k~~i~----~---------~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~ 143 (457)
T 1xm9_A 78 NKLETR----R---------QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGW 143 (457)
T ss_dssp HHHHHH----H---------TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTC
T ss_pred HHHHHH----H---------cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhcccccc
Confidence 001111 1 245677777776 55677888899999888643 100 00111111110
Q ss_pred --hh----------hhHHHHHHHHHHHHHHhcccCCChhhH--hhhhHHHHHHHhhc-c---cCCccchHHHHHHHHHHH
Q psy9904 244 --EH----------KNLLILYDAIGTLADSVGHHLNKPEYI--SLLMPPLIQKWNIL-K---DEDKDLFPLLECLSSVAT 305 (592)
Q Consensus 244 --~~----------~~l~~~~dai~~la~~~g~~~~~~~y~--~~lmp~L~~~~~~~-~---d~~~~~~~~~e~l~~ia~ 305 (592)
.. .-++.+..+++.++.. ++.. .... +.++|+|+..+..- . .+++.+..++.++..++.
T Consensus 144 ~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 144 CDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGR-QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp C---------CCCHHHHHHHHHHHHHHTTS--HHHH-HHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred ccCccchhcccccHHHHHHHHHHHHHHccC--HHHH-HHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 00 0011333444444432 1111 0112 25677777665421 0 111222223333333221
Q ss_pred HHhh------------------------cccc---------------------------ccHHHHHHHHHHHHHHHHHHH
Q psy9904 306 ALQA------------------------GFLP---------------------------YCEPVYRRCVSLIEQTLNQHM 334 (592)
Q Consensus 306 ~~g~------------------------~f~p---------------------------y~~~v~~~~~~~l~~~l~~~~ 334 (592)
.... .|.. +-..+ ++.+...|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----l~~L~~lL~~-- 294 (457)
T 1xm9_A 221 RLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA----IRTYLNLMGK-- 294 (457)
T ss_dssp THHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHH----HHHHHHHHHH--
T ss_pred chhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch----HHHHHHHHhh--
Confidence 0000 0000 00111 1222222211
Q ss_pred hhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhh---hh-HhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchh
Q psy9904 335 ANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDM---HI-DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS 410 (592)
Q Consensus 335 ~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~---~~-~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~ 410 (592)
..+.+.+..++.+|+.++.+-+. .. +..+.....++.++..+++.+.++|..|..+|+.++..-
T Consensus 295 ----------~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-- 362 (457)
T 1xm9_A 295 ----------SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-- 362 (457)
T ss_dssp ----------CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--
T ss_pred ----------cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--
Confidence 11345667788888888765433 12 223323567899999999999999999999999998742
Q ss_pred hhhhh-hhhHHHHHHhccCCCC------hhHHHHHHHHHHHHHHhcCchhhhhH--HHHHHHHHHHHcCCCCCchHHHHH
Q psy9904 411 HVHPC-ISDFMPILGQNLNPDL------ISVCNNATWAIGEISVKLGEDMRRYV--PMVINQLIIIINRPNTPKTLLENT 481 (592)
Q Consensus 411 ~~~~~-l~~llp~l~~~l~~~~------~~v~~~A~~~Lg~ia~~~~~~~~p~~--~~il~~L~~~l~~~~~~~~v~~na 481 (592)
..... -...+|.|++.|...+ .++...++++++.+.....+ ....+ ...++.|..++.++. +..+++.|
T Consensus 363 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~-~~~i~~~A 440 (457)
T 1xm9_A 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSA-SPKAAEAA 440 (457)
T ss_dssp GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCC-cHHHHHHH
Confidence 22222 2468889998887653 35778999999998754433 22333 268899999998762 37899999
Q ss_pred HHHHHHhhh
Q psy9904 482 AITIGRLGY 490 (592)
Q Consensus 482 ~~~lgrl~~ 490 (592)
++.|..+..
T Consensus 441 ~~~L~~~~~ 449 (457)
T 1xm9_A 441 RLLLSDMWS 449 (457)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHHHHc
Confidence 999988763
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.16 E-value=4.4e-09 Score=121.84 Aligned_cols=320 Identities=12% Similarity=0.130 Sum_probs=185.8
Q ss_pred ccchHHHHHHHHHHHHHhhhch----hhhHhHHHHHHHhhcC-----CChhHHHHHHHHHHHHHhhchhchhhhHhhHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVFRE----ELLPVLLPILKETLFH-----HDWEIKESGILALGAIAEGCMNGMVPHLNELVP 141 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~----~vl~~ll~~l~~~l~s-----~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp 141 (592)
.+|..|.++.-|++.++++..+ .++|.++|.|.+.+.+ +...+|..+++.+|..++-+... ..+++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 4699999999999999998753 4688888888877753 44667888999999998866532 357999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHhhcC-------CCccchHHHHHHHHccccCCcc--------------------
Q psy9904 142 FLITCLSDKKALVRAITCWTLSRYSHWVVSQ-------PHDSYLKPLMTEMLGCMNGMVP-------------------- 194 (592)
Q Consensus 142 ~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~-------~~~~~l~~ll~~Ll~~l~~~vq-------------------- 194 (592)
.+++.|.|++|+|+.+||||+..+|+.+... ...+|+++++..+.....+ .+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999987532 1256888888777665521 11
Q ss_pred ------chhhhHHHHHHhcCchhhHHH----------------HH--HHhhhhhhhhhhccCCcccchHHHHHhhhhHHH
Q psy9904 195 ------HLNELVPFLITCLSDKKALVR----------------AI--TCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLI 250 (592)
Q Consensus 195 ------~l~~l~p~l~~il~d~~~~vr----------------~~--a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~ 250 (592)
.+..|++.+..-+ +.... .. .+.+++..++.+| ..+.||+.+++...-++
T Consensus 623 ~~~~~~~l~~L~~~~~~~~---~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-~~f~~~~~~i~~~~l~~-- 696 (1023)
T 4hat_C 623 VAERNRLLSDLMQLPNMAW---DTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQL-- 696 (1023)
T ss_dssp HHHHHHHHHHHTHHHHHHH---HHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHH--
T ss_pred HhhHHHHHHHHHHhHHHHH---HHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHH--
Confidence 1122233222211 11110 00 0111122222222 34455665555433222
Q ss_pred HHHHHHHHH----HHhcccCCC---------------------------hh-hHhhhhHHHHHHH-hhcccCCcc--chH
Q psy9904 251 LYDAIGTLA----DSVGHHLNK---------------------------PE-YISLLMPPLIQKW-NILKDEDKD--LFP 295 (592)
Q Consensus 251 ~~dai~~la----~~~g~~~~~---------------------------~~-y~~~lmp~L~~~~-~~~~d~~~~--~~~ 295 (592)
|.+.+.+. ..-|....+ .+ ....++|+|++.. ..-..+.+. -..
T Consensus 697 -y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~ 775 (1023)
T 4hat_C 697 -YRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1023)
T ss_dssp -HHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred -HHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence 22111111 000110000 00 0122334443321 100011111 135
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhc-
Q psy9904 296 LLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS- 374 (592)
Q Consensus 296 ~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~- 374 (592)
++.+++.++..+|..+.|+++.+++.++. .++..- .++- .+-+++|.....++..+.+..-..|..+-.
T Consensus 776 vL~l~s~iv~~~~~~~~~~~~~il~~vf~---~Tl~mi---~~~~----~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~ 845 (1023)
T 4hat_C 776 VLNCMTTVVEKVGHMIPQGVILILQSVFE---CTLDMI---NKDF----TEYPEHRVEFYKLLKVINEKSFAAFLELPPA 845 (1023)
T ss_dssp HHHHHHHHHHHHGGGCHHHHHHHHHHHHH---HHHHHH---SSCS----SSSHHHHHHHHHHHHHHHHHCTHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHH---hccc----ccChHHHHHHHHHHHHHHHHChHHHHcCCHH
Confidence 67788888888888777776666554432 223221 0111 123677777788888877654333322110
Q ss_pred -cCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 375 -NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 375 -~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
-..+++.++..++++..++-.+++.++-++...+.
T Consensus 846 ~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 846 AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 02367777888999999999999999888876554
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.15 E-value=3.3e-09 Score=111.83 Aligned_cols=345 Identities=13% Similarity=0.081 Sum_probs=194.4
Q ss_pred HHHHHHHHHhhhch-------hhhHhHHHHHHHhhc--------CCChhHHHHHHHHHHHHHhhchhchhhh--------
Q psy9904 79 SAAALDVLANVFRE-------ELLPVLLPILKETLF--------HHDWEIKESGILALGAIAEGCMNGMVPH-------- 135 (592)
Q Consensus 79 aa~~L~~la~~~~~-------~vl~~ll~~l~~~l~--------s~~~~~R~aa~~aLg~iaeg~~~~i~~~-------- 135 (592)
..+.|-.++...+- .++|.+++++...-. +.+...|.-|..||..|+.|-++.....
T Consensus 49 ~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~ 128 (458)
T 3nmz_A 49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHL 128 (458)
T ss_dssp HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 34567777766552 234555555442111 0236899999999999999877543321
Q ss_pred Hh---hHHHHHHHhccCCh-------HHHHH-------HHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhh
Q psy9904 136 LN---ELVPFLITCLSDKK-------ALVRA-------ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNE 198 (592)
Q Consensus 136 l~---~lvp~l~~~L~D~~-------~~VR~-------~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~ 198 (592)
++ ...+.+++.+..+. ..||. .|.|+|++++..- ++=..+++ ..
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~------e~R~~i~~-------------~G 189 (458)
T 3nmz_A 129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE------EHRHAMNE-------------LG 189 (458)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH------HHHHHHHH-------------TT
T ss_pred HHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH------HHHHHHHH-------------CC
Confidence 11 11244455554331 11655 8899999886431 11011110 12
Q ss_pred hHHHHHHhcC-----------chhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCC
Q psy9904 199 LVPFLITCLS-----------DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLN 267 (592)
Q Consensus 199 l~p~l~~il~-----------d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~ 267 (592)
.+|.|..++. +....++..|+|+|.+++..- ..+. .. +
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~---------------~~~k----~~---i--------- 238 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD---------------VANK----AT---L--------- 238 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC---------------HHHH----HH---H---------
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC---------------cccH----HH---H---------
Confidence 3333333331 123456777888888764210 0000 00 0
Q ss_pred ChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCC
Q psy9904 268 KPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYR-RCVSLIEQTLNQHMANSQNPEQFDA 345 (592)
Q Consensus 268 ~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 345 (592)
.-....+|.|++.+. .++.++ ..+..+|+.++..-.... -..+.. ..++.|...|.. .
T Consensus 239 --~~~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~---k~~I~~~GaI~~LV~lLl~------------s 298 (458)
T 3nmz_A 239 --CSMKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNS---KKTLREVGSVKALMECALE------------V 298 (458)
T ss_dssp --HHCHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHTSSCCHHH---HHHHHHTTHHHHHHHHHTT------------C
T ss_pred --HHcCCcHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCHHH---HHHHHHcCCHHHHHHHHhc------------C
Confidence 002345677777654 223333 456667776653100110 011110 122333332210 1
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCCh----HHHHHHHHHHHHHHHH---chhhhhhhh-h
Q psy9904 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP----EVRQSSFALLGDLTKA---CFSHVHPCI-S 417 (592)
Q Consensus 346 ~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~----~vR~~a~~~l~~la~~---~~~~~~~~l-~ 417 (592)
.+.+.+..++.++..++......-.........++.+...+..... ++++.|..+|..|+.+ ..+...... .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 2345666777888888763322212222125688999999886544 4999999999999973 333322222 2
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 418 DFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 418 ~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
..+|.|++.|......++.+|+|+|+.++....+.....+ ...++.|+.++...+ ..++++|+++|..|...+|..
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~--~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTCCSCC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCCHhh
Confidence 5789999999988999999999999999843222222223 257899999997655 789999999999999887764
No 62
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.14 E-value=5.7e-09 Score=100.98 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhc
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQN 426 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~ 426 (592)
.+.+..++.+|+.++..-.......+. ...++.+...+++.++.+|..++.+|+.++..........+ ...+|.+++.
T Consensus 100 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 100 SEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 344445555555555322222112221 45788888999999999999999999999876544322222 4688999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 427 LNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 427 l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
+.++++.++..|+|+|+.++..........+ ..+++.|+.++++++ ..++++|+++++.++...+..
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD--SEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHTCBCC
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc--HHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999864333222222 257899999998765 789999999999999876543
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.09 E-value=7.9e-08 Score=103.74 Aligned_cols=352 Identities=16% Similarity=0.095 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHHhhhch---hhh-HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhc
Q psy9904 74 NLRKCSAAALDVLANVFRE---ELL-PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCL 147 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~---~vl-~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L 147 (592)
.++..|+.+|..++..-.+ .+. .-.+|.|.+++.+++..+|+.|+.||+.++.+..+.-+..+ ...+|.|+..|
T Consensus 63 ~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL 142 (584)
T 3l6x_A 63 AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHH
Confidence 4788888999999864432 233 23678888889999999999999999999976321111222 36899999999
Q ss_pred cC-ChHHHHHHHHHHHHHHHHHhhcCCCcc----chHHHHHHHHccccCCccchhhhHHHHH---------HhcCchhhH
Q psy9904 148 SD-KKALVRAITCWTLSRYSHWVVSQPHDS----YLKPLMTEMLGCMNGMVPHLNELVPFLI---------TCLSDKKAL 213 (592)
Q Consensus 148 ~D-~~~~VR~~a~~aL~~l~~~~~~~~~~~----~l~~ll~~Ll~~l~~~vq~l~~l~p~l~---------~il~d~~~~ 213 (592)
++ ++..++..|+++|..++.. +..... -+++++..+. .|+-. .........
T Consensus 143 ~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~~alp~Lv~LL~-------------~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 143 RKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHALHALTDEVI-------------IPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHHHTHHHHHHHTH-------------HHHHCCC----------CCCCHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCC--chhhHHHHhccHHHHHHHHh-------------cccccccccccccccccccccHH
Confidence 86 5788999999999998852 111011 1122211110 01100 000111235
Q ss_pred HHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhc-ccCCcc
Q psy9904 214 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNIL-KDEDKD 292 (592)
Q Consensus 214 vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~-~d~~~~ 292 (592)
|+..|+++|.+++..- ++....| .+ ...+++.|+..+..- ...+.+
T Consensus 208 V~~nAa~~L~NLs~~~------~~~R~~i---------~~------------------~~Gli~~LV~~L~~~~~~~~~~ 254 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSER------SEARRKL---------RE------------------CDGLVDALIFIVQAEIGQKDSD 254 (584)
T ss_dssp HHHHHHHHHHHHTSSC------HHHHHHH---------HH------------------STTHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCC------HHHHHHH---------HH------------------cCCcHHHHHHHHHHhhcccCcc
Confidence 6667777777764210 0000000 00 012223333332210 001111
Q ss_pred ---chHHHHHHHHHHHHHhhc-------------------------ccc-ccHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy9904 293 ---LFPLLECLSSVATALQAG-------------------------FLP-YCEPVYRRCVSLIEQTLNQHMANSQNPEQF 343 (592)
Q Consensus 293 ---~~~~~e~l~~ia~~~g~~-------------------------f~p-y~~~v~~~~~~~l~~~l~~~~~~~~~~~~~ 343 (592)
...++-+|..++.....+ ... +-+.++ +.+...+..
T Consensus 255 ~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v----~~Ll~LL~~----------- 319 (584)
T 3l6x_A 255 SKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV----RIYISLLKE----------- 319 (584)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHH----HHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHH----HHHHHHHcc-----------
Confidence 122333333333221110 000 011222 222333321
Q ss_pred CCCChhHHHHHHHHHHHHHhhhh---hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHH
Q psy9904 344 DAPDKDFMIVALDLLSGLAEGLD---MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFM 420 (592)
Q Consensus 344 ~~~d~~~~~~ald~l~~l~~~lg---~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~ll 420 (592)
....+.++.++.+|..++.+-+ ..+...+.....++.|...|...+..+++.|..+|++|+...... ...-...+
T Consensus 320 -s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~i 397 (584)
T 3l6x_A 320 -SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAI 397 (584)
T ss_dssp -CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCH
Confidence 0134567788888888875432 223333433457899999999999999999999999999764321 12235688
Q ss_pred HHHHhccCCC--------ChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 421 PILGQNLNPD--------LISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 421 p~l~~~l~~~--------~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
|.|++.|... ..++...|||+|+.|+.......+..+. ..++.|+.++.+.+....+.+.|++++..|..
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 9999988754 3567889999999997544333333333 68999999998753347899999999999874
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.00 E-value=8.7e-08 Score=100.93 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=121.7
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh-CCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM-QDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPIL 423 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l-~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l 423 (592)
+.+.+..++.+|..++..-.......+.....++.++..+ +..+..+++.+..+|.+|+.++...-.... ...+|.|
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 4677788888888886531122222222245678888864 556789999999999999986543222222 4688888
Q ss_pred HhccCCCCh----hHHHHHHHHHHHHHHh--cCchhhhhH--HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 424 GQNLNPDLI----SVCNNATWAIGEISVK--LGEDMRRYV--PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 424 ~~~l~~~~~----~v~~~A~~~Lg~ia~~--~~~~~~p~~--~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
++.+..... +++.+|+|+|..++.. ...+....+ ...++.|+.+|.+.+ ..++++|+++|+.++..+++.
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~--~~v~~~A~~aL~nLa~~~~~~ 413 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARNPKD 413 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC--HHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCHHH
Confidence 888875543 4899999999999863 222222222 257899999998765 779999999999998655543
Q ss_pred hH---------hHhhhcccCCCchHhHHHHHHHHHHHhhCchh
Q psy9904 496 VA---------PLCSSLRNIRDNEEKDSAFRGMCAMITVNPGG 529 (592)
Q Consensus 496 ~~---------p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~ 529 (592)
.. +++..|. -.+..-+..|..+|.+|...+|..
T Consensus 414 ~~~i~~~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 414 QEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHhh
Confidence 21 1333332 233334788999999999888864
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=1.3e-08 Score=96.02 Aligned_cols=91 Identities=25% Similarity=0.352 Sum_probs=67.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHD 175 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~ 175 (592)
+..++.+.+.+++++|.+|..|+.+|+.+.. +..+|.|++.|+|+++.||..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4445666666789999999999999998754 3677888999999999999999999998741
Q ss_pred cchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 176 SYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 176 ~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
++.+|.+...++|++..+|..++++|+.+
T Consensus 80 ---------------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 80 ---------------------ERAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp ---------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 12234444555666777877766666543
No 66
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.97 E-value=5.2e-09 Score=120.79 Aligned_cols=334 Identities=12% Similarity=0.178 Sum_probs=193.0
Q ss_pred hHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-cCCccchhhhHHHHHHhcCchhhHH
Q psy9904 138 ELVPFLITCLS--DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-NGMVPHLNELVPFLITCLSDKKALV 214 (592)
Q Consensus 138 ~lvp~l~~~L~--D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-~~~vq~l~~l~p~l~~il~d~~~~v 214 (592)
.+++.+-+.++ ..+|..++++|||+|.++..+.++...++++.+++.|++-. .++ =+|.+..+
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~--------------~kd~k~~v 542 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKR--------------GKDNKAII 542 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSC--------------SHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccc--------------ccchhHHH
Confidence 34444444444 34699999999999999854432112355666555544322 000 02335567
Q ss_pred HHHHHhhhhhhhhhhccCCcccchHHHHHhh--------hhH-HHHHHHHHHHHHHhcccCCC------hhhHhhhhHHH
Q psy9904 215 RAITCWTLSRYSHWVVSQPHDSYLKPLMTEH--------KNL-LILYDAIGTLADSVGHHLNK------PEYISLLMPPL 279 (592)
Q Consensus 215 r~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~--------~~l-~~~~dai~~la~~~g~~~~~------~~y~~~lmp~L 279 (592)
+...||++|+|.+|+. .+..|+.++++.. +.+ ..+.+|+..+++.++..+.. .||++.|+..+
T Consensus 543 as~i~~vlgrY~~wl~--~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~ 620 (1073)
T 3gjx_A 543 ASNIMYIVGQYPRFLR--AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNI 620 (1073)
T ss_dssp HHHHHHHHHHCHHHHH--HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSH
T ss_pred HHHHHHHHhhhHHHHH--hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 8888999999999996 3456777776531 233 37789999999999887632 25888777776
Q ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-hhHHHHHHH
Q psy9904 280 IQKWNILKDEDKDLFPLLECLSSVATALQAGF--LPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD-KDFMIVALD 356 (592)
Q Consensus 280 ~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f--~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d-~~~~~~ald 356 (592)
-+....+ +.+....+++|+|.++.+.+.+- ..|+...++...........+. .++++...+++ -+-....+.
T Consensus 621 ~~~~~~l--~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~---~~~~~~~~d~~~i~~l~~il~ 695 (1073)
T 3gjx_A 621 NTIICDL--QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQA---TKNVDILKDPETVKQLGSILK 695 (1073)
T ss_dssp HHHHTTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHH---HHCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHh---hcCchhccChHHHHHHHHHHh
Confidence 6654433 22345789999999999888643 2233333322222222222111 11221111111 122367788
Q ss_pred HHHHHHhhhhhhhHhhhccCchHHHHHHHhC-----------------CCC------hHHHHHHHHHHHHHHHHchhhhh
Q psy9904 357 LLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ-----------------DPM------PEVRQSSFALLGDLTKACFSHVH 413 (592)
Q Consensus 357 ~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~-----------------~~~------~~vR~~a~~~l~~la~~~~~~~~ 413 (592)
+.+.++.++|..|.|++ ..+++-++..-+ .+. ..+|+..+.++...+.... +..
T Consensus 696 ~n~~v~~~~g~~f~~~~--~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~-~~~ 772 (1073)
T 3gjx_A 696 TNVRACKAVGHPFVIQL--GRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN-DPQ 772 (1073)
T ss_dssp HHHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCS-CHH
T ss_pred hhHHHHhhcchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC-CHH
Confidence 99999999999999988 445443332211 011 2355666666665543321 111
Q ss_pred hhhhhHHHHHHhcc----CCCChhHHHH-HHHHHHHHHHhcCchhhhhHHHHHHHH----HHHHcCC-CCCchHHHHHHH
Q psy9904 414 PCISDFMPILGQNL----NPDLISVCNN-ATWAIGEISVKLGEDMRRYVPMVINQL----IIIINRP-NTPKTLLENTAI 483 (592)
Q Consensus 414 ~~l~~llp~l~~~l----~~~~~~v~~~-A~~~Lg~ia~~~~~~~~p~~~~il~~L----~~~l~~~-~~~~~v~~na~~ 483 (592)
.....++|.++..+ ....+..|.. .+.....++..+|..+.|.++.++..+ +++++.. +..+..+.+.-.
T Consensus 773 ~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ 852 (1073)
T 3gjx_A 773 MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFL 852 (1073)
T ss_dssp HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHH
Confidence 12233444444332 2223334433 344555577777777778777777665 4567642 224788888888
Q ss_pred HHHHhhhhCCCc
Q psy9904 484 TIGRLGYVCPHD 495 (592)
Q Consensus 484 ~lgrl~~~~~~~ 495 (592)
-+.++..+|+..
T Consensus 853 ll~~~~~~~f~~ 864 (1073)
T 3gjx_A 853 LLQAVNSHCFPA 864 (1073)
T ss_dssp HHHHHHHHCGGG
T ss_pred HHHHHHHHHhHH
Confidence 888888777653
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.96 E-value=2.7e-07 Score=104.52 Aligned_cols=308 Identities=13% Similarity=0.179 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhhhc-hhhh-HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhc--hhchhhhHhhHHHHHHHhccCCh
Q psy9904 76 RKCSAAALDVLANVFR-EELL-PVLLPILKETLFHHDWEIKESGILALGAIAEGC--MNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 76 Rk~aa~~L~~la~~~~-~~vl-~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~--~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
|+.|+..+..+...-+ ...+ ..++..+...+.+.... ++|+.+++++++.. ...+.||+-.++|.++..+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 5677777777665322 2211 24666666666664333 99999999999654 35678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~ 231 (592)
..||.+|-.|+..+...+.+.. ...+++.|+..+ ++. +
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~------------------~~~------------~-------- 146 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVA----IKALLPHLTNAI------------------VET------------N-------- 146 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHH------------------HHC------------C--------
T ss_pred hHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHh------------------ccc------------c--------
Confidence 9999999999999998876532 233333333322 100 0
Q ss_pred CCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhh-
Q psy9904 232 QPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQA- 309 (592)
Q Consensus 232 ~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~- 309 (592)
+++....++++++.+++.....+. .+++.++|.+-+.+ .|..+++ ..+..|+..++..++.
T Consensus 147 ------------kw~~k~~~l~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~---~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 147 ------------KWQEKIAILAAFSAMVDAAKDQVA--LRMPELIPVLSETM---WDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSHHHHH--HHHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred ------------chHHHHHHHHHHHHHHHHhHHHHH--HhccchhcchHhhc---ccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 111122346667777766655554 67889999988753 3555555 5788999999988775
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhh--hhhhHhhhccCchHHHHHHHhC
Q psy9904 310 GFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL--DMHIDSLVSNSNIMHLLYQCMQ 387 (592)
Q Consensus 310 ~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~l--g~~~~~~~~~~~l~~~l~~~l~ 387 (592)
+..||.+.+ ..++. +| + +. -+|+-.+...+ .+--.|-+ +-+.|+|...|+
T Consensus 210 d~~~~~~~~--------~~~~~-------~p------~-~~----~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~ 261 (986)
T 2iw3_A 210 DIERFIPSL--------IQCIA-------DP------T-EV----PETVHLLGATTFVAEVTPATL--SIMVPLLSRGLN 261 (986)
T ss_dssp TTGGGHHHH--------HHHHH-------CT------T-HH----HHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHT
T ss_pred chhhhHHHH--------HHHhc-------Ch------h-hh----HHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhc
Confidence 677776533 34432 22 1 11 12222222111 00012333 357899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHc--hhhhhhhhhhHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCc----hh-----hh
Q psy9904 388 DPMPEVRQSSFALLGDLTKAC--FSHVHPCISDFMPILGQNLNP-DLISVCNNATWAIGEISVKLGE----DM-----RR 455 (592)
Q Consensus 388 ~~~~~vR~~a~~~l~~la~~~--~~~~~~~l~~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~----~~-----~p 455 (592)
.+...+++.+.-++.++++-. +.+..||+|.++|.+-+..+. .+|++|..|-.++..+-...+. .+ ..
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 341 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAG 341 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTT
T ss_pred cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 999999999999999999876 568899999999999987653 5788888887777777554332 11 22
Q ss_pred hHHHHHHHHHHHHcCCC
Q psy9904 456 YVPMVINQLIIIINRPN 472 (592)
Q Consensus 456 ~~~~il~~L~~~l~~~~ 472 (592)
-...++..+...+....
T Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (986)
T 2iw3_A 342 DVSTTLQVVNELLKDET 358 (986)
T ss_dssp CHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHhcccc
Confidence 35566677777776543
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.93 E-value=2.1e-08 Score=113.59 Aligned_cols=157 Identities=17% Similarity=0.303 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
-.||++|..+++.+...+++.-+..++|.|..++.+. .|+.+.+|+..++.+++.+++.+...+++++|.+..++.|.+
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k 188 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTK 188 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCc
Confidence 3599999999999999999866688999888888654 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-----------cCCcc-----chhhhHHHHHHhcCchhhHHH
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-----------NGMVP-----HLNELVPFLITCLSDKKALVR 215 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-----------~~~vq-----~l~~l~p~l~~il~d~~~~vr 215 (592)
+.|..+|..|+..+|..+...+..++++.++.++.+-- ..-|+ +|.-++|.|..-|++..+-++
T Consensus 189 ~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 189 KEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp HHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhh
Confidence 99999999999999998887778888888777665421 11222 467889999999987777776
Q ss_pred HHHHhhhhhhhhhh
Q psy9904 216 AITCWTLSRYSHWV 229 (592)
Q Consensus 216 ~~a~~~L~~~a~~~ 229 (592)
..++-.+.++++.+
T Consensus 269 r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 269 RKSAVIIDNMCKLV 282 (986)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred eeeEEEEcchhhhc
Confidence 66666666665544
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.93 E-value=1.9e-07 Score=104.64 Aligned_cols=305 Identities=13% Similarity=0.074 Sum_probs=182.8
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc-CC---ChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLF-HH---DWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS 148 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~-s~---~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~ 148 (592)
-.+|.+|..+||.+..+.+++++..+.++|...-. .. ...+|.+|+++||-+.-|..+ ++++..|.+.|.
T Consensus 409 ~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~ 482 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLY 482 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHh
Confidence 35899999999999988876555555555433210 00 268999999999998877764 256677777777
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhh
Q psy9904 149 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 228 (592)
Q Consensus 149 D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~ 228 (592)
|.+..+|+.|+.+||.+.- + ....+.+..++..+.. +.+..+|.+++.+|+..
T Consensus 483 dd~~~~~~~AalALGli~v--G-Tgn~~ai~~LL~~~~e---------------------~~~e~vrR~aalgLGll--- 535 (963)
T 4ady_A 483 NDSATSGEAAALGMGLCML--G-TGKPEAIHDMFTYSQE---------------------TQHGNITRGLAVGLALI--- 535 (963)
T ss_dssp TCCHHHHHHHHHHHHHHHT--T-CCCHHHHHHHHHHHHH---------------------CSCHHHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHHHHhhhhc--c-cCCHHHHHHHHHHHhc---------------------cCcHHHHHHHHHHHHhh---
Confidence 7778889999999997642 1 1223333333332221 11334555544444421
Q ss_pred hccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHH
Q psy9904 229 VVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATAL 307 (592)
Q Consensus 229 ~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~ 307 (592)
..| ++..++.++..|.. +.++.+ ..+.-+++ +...
T Consensus 536 --------------------------------~~g----~~e~~~~li~~L~~------~~dp~vRygaa~alg--lAya 571 (963)
T 4ady_A 536 --------------------------------NYG----RQELADDLITKMLA------SDESLLRYGGAFTIA--LAYA 571 (963)
T ss_dssp --------------------------------TTT----CGGGGHHHHHHHHH------CSCHHHHHHHHHHHH--HHTT
T ss_pred --------------------------------hCC----ChHHHHHHHHHHHh------CCCHHHHHHHHHHHH--HHhc
Confidence 011 12344444444432 223222 22222222 2223
Q ss_pred hhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhC
Q psy9904 308 QAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ 387 (592)
Q Consensus 308 g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~ 387 (592)
|.+- ...++. +|..+. . +.+.+.|..|.-.|+-|.- |+. ..+..++-...+
T Consensus 572 GTGn----~~aIq~---LL~~~~-~------------d~~d~VRraAViaLGlI~~--g~~-------e~v~rlv~~L~~ 622 (963)
T 4ady_A 572 GTGN----NSAVKR---LLHVAV-S------------DSNDDVRRAAVIALGFVLL--RDY-------TTVPRIVQLLSK 622 (963)
T ss_dssp TSCC----HHHHHH---HHHHHH-H------------CSCHHHHHHHHHHHHHHTS--SSC-------SSHHHHTTTGGG
T ss_pred CCCC----HHHHHH---HHHHhc-c------------CCcHHHHHHHHHHHHhhcc--CCH-------HHHHHHHHHHHh
Confidence 4432 112211 222222 1 1234567666666665532 211 112223323445
Q ss_pred CCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy9904 388 DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIII 467 (592)
Q Consensus 388 ~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~ 467 (592)
+.++.||..+.-.+|.++...+. +.++..|.....|.+..||++|+.+||.+.....+...|.+.+++..|...
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 77899999999999988754332 345556666678899999999999999998766677778999999999999
Q ss_pred HcCCCCCchHHHHHHHHHHHhh
Q psy9904 468 INRPNTPKTLLENTAITIGRLG 489 (592)
Q Consensus 468 l~~~~~~~~v~~na~~~lgrl~ 489 (592)
..+.+.+..++-.++.+.|-+-
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHT
T ss_pred HhcccccHHHHHHHHHHHHHHh
Confidence 8765544778888888988774
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.88 E-value=8.4e-08 Score=107.41 Aligned_cols=303 Identities=15% Similarity=0.111 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHhhhchhhhHhHHHHHHHhhc---CCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh-
Q psy9904 76 RKCSAAALDVLANVFREELLPVLLPILKETLF---HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK- 151 (592)
Q Consensus 76 Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~---s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~- 151 (592)
+-+|..+||.+-..-.++ .+.+|..++. +.+..+|.+|+++||.+..|..+ .++..|...|.+++
T Consensus 375 k~sA~aSLGlIh~g~~~~----gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~ 443 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLE----GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSG 443 (963)
T ss_dssp HHHHHHHHHHHTSSCTTT----HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhhhccCchHH----HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccc
Confidence 456667777776544443 3556666665 67889999999999999988764 24555555565544
Q ss_pred -------HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 152 -------ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 152 -------~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
+.||..|+.+||-..- +. .. +++.+.|.+++.+....++..++.+++.
T Consensus 444 ~~~~~~~~~ir~gAaLGLGla~~--GS-~~----------------------eev~e~L~~~L~dd~~~~~~~AalALGl 498 (963)
T 4ady_A 444 TSGDEDVDVLLHGASLGIGLAAM--GS-AN----------------------IEVYEALKEVLYNDSATSGEAAALGMGL 498 (963)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHST--TC-CC----------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhc--CC-CC----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 7899999999998542 11 11 2333344444444344555555555543
Q ss_pred hhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHH
Q psy9904 225 YSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSV 303 (592)
Q Consensus 225 ~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~i 303 (592)
. .+|..- ...+..|+..+.. +.+.. ++.+..+||.+
T Consensus 499 i-----------------------------------~vGTgn--~~ai~~LL~~~~e------~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 499 C-----------------------------------MLGTGK--PEAIHDMFTYSQE------TQHGNITRGLAVGLALI 535 (963)
T ss_dssp H-----------------------------------HTTCCC--HHHHHHHHHHHHH------CSCHHHHHHHHHHHHHH
T ss_pred h-----------------------------------hcccCC--HHHHHHHHHHHhc------cCcHHHHHHHHHHHHhh
Confidence 2 123221 1344444444332 11112 23344455444
Q ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHH
Q psy9904 304 ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLY 383 (592)
Q Consensus 304 a~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~ 383 (592)
. +|.. ..++.+ +.. |.. .++.-.|-.+.-+++.-..+.|..- .+-.++.
T Consensus 536 ~--~g~~--e~~~~l----i~~----L~~------------~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~ 584 (963)
T 4ady_A 536 N--YGRQ--ELADDL----ITK----MLA------------SDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLH 584 (963)
T ss_dssp T--TTCG--GGGHHH----HHH----HHH------------CSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHH
T ss_pred h--CCCh--HHHHHH----HHH----HHh------------CCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHH
Confidence 2 2221 112222 222 221 1234444444444444333444321 1223555
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhcc-CCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Q psy9904 384 QCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL-NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVIN 462 (592)
Q Consensus 384 ~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l-~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~ 462 (592)
.+.++.+..||+.|...||-++-.-. ...|.++..+ +..++.||..|+++||.++...+. +.++.
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid 650 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAID 650 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHH
Confidence 66678889999999988887653321 2233333332 356789999999999998733221 45666
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc----hHhHhhhcc
Q psy9904 463 QLIIIINRPNTPKTLLENTAITIGRLGYVCPHD----VAPLCSSLR 504 (592)
Q Consensus 463 ~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~----~~p~~~~L~ 504 (592)
.|.++..+++ ..|+.+|+.++|.++....+. ++.+++.|.
T Consensus 651 ~L~~L~~D~d--~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 651 VLDPLTKDPV--DFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp HHHHHHTCSS--HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHHccCCC--HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 7777776554 889999999999999876655 455555443
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.86 E-value=5.1e-08 Score=91.19 Aligned_cols=186 Identities=21% Similarity=0.232 Sum_probs=123.3
Q ss_pred hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 94 LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 94 vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
.-+...+.+.+.++|++|.+|..|+.+|+.+.. +..++.+++.|+|+++.||..|+++|+.+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 345667777788899999999999999998653 3567888899999999999999999998741
Q ss_pred CccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHH
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~d 253 (592)
++.+|.+...++|++..+|..++++|+.+.
T Consensus 75 -----------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------------------------- 104 (201)
T 3ltj_A 75 -----------------------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--------------------------- 104 (201)
T ss_dssp -----------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------------------------
T ss_pred -----------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------------------------
Confidence 123344455567778888888877776541
Q ss_pred HHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q psy9904 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQ 332 (592)
Q Consensus 254 ai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~ 332 (592)
. +..++.|...+ .+.++.+ ..++.+++.+.. .. .++.+...+.
T Consensus 105 ----------~--------~~~~~~L~~~l---~d~~~~vr~~a~~aL~~~~~---~~-----------~~~~L~~~l~- 148 (201)
T 3ltj_A 105 ----------D--------ERAVEPLIKAL---KDEDWFVRIAAAFALGEIGD---ER-----------AVEPLIKALK- 148 (201)
T ss_dssp ----------C--------GGGHHHHHHHT---TCSSHHHHHHHHHHHHHHTC---GG-----------GHHHHHHHTT-
T ss_pred ----------c--------HHHHHHHHHHH---cCCCHHHHHHHHHHHHHhCC---HH-----------HHHHHHHHHc-
Confidence 0 11234444433 2444443 456666665531 11 1233333331
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy9904 333 HMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 333 ~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la 405 (592)
+++...+..++..|+.+ |. +..++.+...++++++.||..|...|+.+.
T Consensus 149 ------------d~~~~vr~~A~~aL~~~----~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 149 ------------DEDGWVRQSAADALGEI----GG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------------CSSHHHHHHHHHHHHHH----CS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------------CCCHHHHHHHHHHHHHh----Cc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 23566777787777776 21 234667777778889999999999887653
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.84 E-value=6.6e-08 Score=91.14 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+|.+|..|+.+|+.+.. +..++.|.+.+++++|.+|..|+.+||.+.. +..+|.++..|+|++
T Consensus 32 ~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~ 94 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDED 94 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCC
Confidence 47899999999987653 3445666677789999999999999999753 356788899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
+.||..|+++|+++.. ++.+|.|...++|++..||..++++|+.+
T Consensus 95 ~~vr~~a~~aL~~~~~-----------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGD-----------------------------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-----------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999998742 12345555666777888888887777654
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.80 E-value=6.2e-07 Score=95.18 Aligned_cols=318 Identities=15% Similarity=0.142 Sum_probs=178.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchH-HHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHH
Q psy9904 140 VPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK-PLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAIT 218 (592)
Q Consensus 140 vp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~-~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a 218 (592)
+|.++..|+++++.+|..|+++|.+++.. .+... .+.. ...+|.|..+|.+++..++..|
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~------~~~~~~~i~~-------------~g~i~~Lv~lL~s~~~~~~~~A 64 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQ------DESAKQQVYQ-------------LGGICKLVDLLRSPNQNVQQAA 64 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSS------CSSHHHHHHH-------------TTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcC------ChHHHHHHHH-------------cCCHHHHHHHHcCCCHHHHHHH
Confidence 67888899999999999999999998731 11111 1111 3567888888887788899999
Q ss_pred Hhhhhhhhhhhc-------cCCcccchHHHHHhhhh---HHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhh---
Q psy9904 219 CWTLSRYSHWVV-------SQPHDSYLKPLMTEHKN---LLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI--- 285 (592)
Q Consensus 219 ~~~L~~~a~~~~-------~~~~~~y~~~~~~~~~~---l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~--- 285 (592)
+|+|.+++.... .....|.+..++....+ ...+..+++.++.. ++ .+...+...+|.|++.+..
T Consensus 65 ~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~-~~~~i~~g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DE-LKEELIADALPVLADRVIIPFS 141 (457)
T ss_dssp HHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SS-THHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HH-hHHHHHhccHHHHHHHHhcccc
Confidence 999998875311 11123333333321111 12344455555532 22 2223445778888887621
Q ss_pred -c-ccC--------Cccc-hHHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHH
Q psy9904 286 -L-KDE--------DKDL-FPLLECLSSVATALQAGFLPYC--EPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352 (592)
Q Consensus 286 -~-~d~--------~~~~-~~~~e~l~~ia~~~g~~f~py~--~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 352 (592)
. ... +.++ ..+..+|+.++.. .....-.. +..++.++.++...... ..+ +.....
T Consensus 142 ~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~-----~~~------~~~~~e 209 (457)
T 1xm9_A 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAA-----SRC------DDKSVE 209 (457)
T ss_dssp TCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHH-----TCT------TCTTHH
T ss_pred ccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccc-----cCC------chHHHH
Confidence 0 001 1111 3566677777653 11100001 12333334444332211 001 111122
Q ss_pred HHHHHHHHHHhhh----------------------------h----------------------hhhHhhhccCchHHHH
Q psy9904 353 VALDLLSGLAEGL----------------------------D----------------------MHIDSLVSNSNIMHLL 382 (592)
Q Consensus 353 ~ald~l~~l~~~l----------------------------g----------------------~~~~~~~~~~~l~~~l 382 (592)
.++-++..+...+ + ....-++ ....++.+
T Consensus 210 ~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L 288 (457)
T 1xm9_A 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTY 288 (457)
T ss_dssp HHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG-SHHHHHHH
T ss_pred HHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHH
Confidence 2222222221000 0 0011111 13456666
Q ss_pred HHHhCC-CChHHHHHHHHHHHHHHHHchh---hh-hhhh--hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 383 YQCMQD-PMPEVRQSSFALLGDLTKACFS---HV-HPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 383 ~~~l~~-~~~~vR~~a~~~l~~la~~~~~---~~-~~~l--~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
...+++ .++.+++.|..+|++++..-.. .. ...+ ...+|.|++.+...+..++..|+|+|+.++.. .....
T Consensus 289 ~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~ 366 (457)
T 1xm9_A 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHR 366 (457)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHH
Confidence 666654 4689999999999999864332 22 2223 36789999999999999999999999999863 23332
Q ss_pred h-HHHHHHHHHHHHcCCCCC----chHHHHHHHHHHHhhhhCCC
Q psy9904 456 Y-VPMVINQLIIIINRPNTP----KTLLENTAITIGRLGYVCPH 494 (592)
Q Consensus 456 ~-~~~il~~L~~~l~~~~~~----~~v~~na~~~lgrl~~~~~~ 494 (592)
. -...++.|+.+|..++.. ..+...++++++.+....++
T Consensus 367 ~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 2 246889999999876432 34667888888888765543
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.78 E-value=1.1e-06 Score=89.71 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=86.7
Q ss_pred CchHHHHHHHhCCCCh----HHHHHHHHHHHHHHHH---chhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q psy9904 376 SNIMHLLYQCMQDPMP----EVRQSSFALLGDLTKA---CFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISV 447 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~----~vR~~a~~~l~~la~~---~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~ 447 (592)
...++.|...+...+. ++++.+..+|..++.+ ..+.-.... ...+|.|++.|......++.+|+|+|+.++.
T Consensus 213 ~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 3567777777765543 5999999999999873 333222222 2478999999998899999999999999974
Q ss_pred hcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 448 KLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 448 ~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
...+.....++ ..++.|+.++.+.+ ..++++|+++|..|....|+.
T Consensus 293 ~~~~~~~~i~~~G~i~~Lv~LL~s~~--~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 293 RNPKDQEALWDMGAVSMLKNLIHSKH--KMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCCHHH
Confidence 32222222222 57899999998765 789999999999999877754
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.78 E-value=1.7e-07 Score=87.58 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=83.4
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+|.+|..|+.+|+.+.. +..++.+.+.+++++|.+|..|+.+||.+.. +..+|.++..|+|++
T Consensus 27 ~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~ 89 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDED 89 (201)
T ss_dssp CHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCC
Confidence 47899999999987653 2345556667789999999999999998752 356788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 152 ALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 152 ~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
+.||..|+++|+++.. ++.+|.+...++|++..||..++++|+.+
T Consensus 90 ~~vr~~a~~aL~~~~~-----------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGD-----------------------------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-----------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999998742 12344455566777888888888777754
No 76
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.76 E-value=3.7e-07 Score=88.38 Aligned_cols=179 Identities=15% Similarity=0.243 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHh
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQ 425 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~ 425 (592)
+.+.+..++..+..++..-......++. ...++.++..+++.++++|..|+.+|+.++......-...+. ..+|.+++
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 103 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 3456677888887666553333333443 578999999999999999999999999998754433332332 48899999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc---------
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD--------- 495 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~--------- 495 (592)
.+++++..++.+|+|+|+.++..........+. .+++.|+.++++++ ..++.+++++++.++...++.
T Consensus 104 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 181 (252)
T 4db8_A 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGA 181 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 999999999999999999997543322122333 58899999998764 789999999999999755432
Q ss_pred hHhHhhhcccCCCchHhHHHHHHHHHHHhhCchh
Q psy9904 496 VAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGG 529 (592)
Q Consensus 496 ~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~ 529 (592)
+.+++..|.. .+..-+..|..+|+.+...+|..
T Consensus 182 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 182 LPALVQLLSS-PNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp HHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHH
Confidence 1123344432 23333778999999998766643
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.75 E-value=5.2e-07 Score=89.60 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHH-HhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHHHhcc
Q psy9904 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQ-CMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPILGQNL 427 (592)
Q Consensus 350 ~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~-~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l~~~l 427 (592)
-+..+++.|..++...... ..+.. ...++.++. +|+++++++|+.|..+||.++...+..-...+. ..+|.|++.+
T Consensus 56 ~k~~Al~~L~~lv~~~dna-~~~~~-~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMDNA-ADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHH-HHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhH-HHHHH-cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 3566788888887755421 12221 346778888 999999999999999999999764432111222 5778888888
Q ss_pred CC-CChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCch---------
Q psy9904 428 NP-DLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDV--------- 496 (592)
Q Consensus 428 ~~-~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~--------- 496 (592)
+. ....++.+|+|+|+.++.........++. ..++.|+.+|++++ ..++..|+|+|+.++...++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d--~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV--QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 64 47889999999999998765444444443 68899999998765 7899999999999987765432
Q ss_pred HhHhhhcccCCCchHhHHHHHHHHHHHhhCchhhh------hhHHHHHHH-hhccC--CCchhHHHHHHHHHHHHHh
Q psy9904 497 APLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVV------QEFIFFCDA-VASWS--TPKEDLKEMFHKILHGFRT 564 (592)
Q Consensus 497 ~p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~------~~~~~~~~~-i~~~~--~~~~~~~~~~~~ll~~~~~ 564 (592)
.+++..|. -.+..-+..|..+|+.++..++..+. +.+..++.. +.+.+ ...++..+...+|+..|-.
T Consensus 212 ~~Lv~LL~-~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHc-CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 12333333 23444478899999999987765432 223444432 11111 1234666667777776653
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.74 E-value=2e-07 Score=87.61 Aligned_cols=144 Identities=19% Similarity=0.318 Sum_probs=110.8
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHh
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQ 425 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~ 425 (592)
+.+.+..++.+|+.++..-.......+. ...++.++..++++++.+|..|+.+|+.++..........+ ...+|.+++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 103 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH
Confidence 5677888999999998654443334443 57899999999999999999999999999865444322222 358899999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYV-PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
.+++++..++..|+|+|+.++..........+ ..+++.|+.++++++ ..++.+++++++.++...+
T Consensus 104 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN 170 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCH
T ss_pred HHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999864333322333 357899999998764 7899999999999987544
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.67 E-value=5e-06 Score=98.52 Aligned_cols=441 Identities=12% Similarity=0.065 Sum_probs=227.6
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh--------------chhhhHhh
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN--------------GMVPHLNE 138 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~--------------~i~~~l~~ 138 (592)
..+|...+.++..++..--++-||.+++.+.+.+++ +...++.++.+|..+.|-... .+..+++.
T Consensus 110 ~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~ 188 (1204)
T 3a6p_A 110 NHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMER 188 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 679999999999999865445688888888888766 567899999999999875321 34556778
Q ss_pred HHHHHHHhccC-------------------ChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-cCCccchhh
Q psy9904 139 LVPFLITCLSD-------------------KKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-NGMVPHLNE 198 (592)
Q Consensus 139 lvp~l~~~L~D-------------------~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-~~~vq~l~~ 198 (592)
+++.+...|++ +++.++..++.|+.++.+|+......+.-..++..++..+ +..+
T Consensus 189 I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~l----- 263 (1204)
T 3a6p_A 189 IFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQEL----- 263 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTT-----
T ss_pred HHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHH-----
Confidence 88888877764 2356778888888888777542100000012333333322 1111
Q ss_pred hHHHHHHhcCchhhHHHHHHHhhhhhhhhhhcc-C---Ccccch-----HHHHH----------------hhhhHHHHHH
Q psy9904 199 LVPFLITCLSDKKALVRAITCWTLSRYSHWVVS-Q---PHDSYL-----KPLMT----------------EHKNLLILYD 253 (592)
Q Consensus 199 l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~-~---~~~~y~-----~~~~~----------------~~~~l~~~~d 253 (592)
|..|+.+|..++..-.+ + .....+ ..++. -.+.+-.++.
T Consensus 264 ----------------r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~ 327 (1204)
T 3a6p_A 264 ----------------QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLC 327 (1204)
T ss_dssp ----------------HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 11111111111100000 0 000000 00000 0111111222
Q ss_pred HHHH-HHHHhccc--CCChhhHhhhhHHHHHHHhhcccCCccc-hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy9904 254 AIGT-LADSVGHH--LNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQT 329 (592)
Q Consensus 254 ai~~-la~~~g~~--~~~~~y~~~lmp~L~~~~~~~~d~~~~~-~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~ 329 (592)
+++. +....... ...++.+..+++.++..... .+..+ ..+++.+..+.+.....-.+.+.++++++++.+...
T Consensus 328 ~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~---~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~ 404 (1204)
T 3a6p_A 328 ALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH---PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTN 404 (1204)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC---ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 2221 11111110 01235677888888876542 22222 345566665554432111122334444555555332
Q ss_pred HHHHHhhcCCCC---------CCCCC-C-----hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCC------
Q psy9904 330 LNQHMANSQNPE---------QFDAP-D-----KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQD------ 388 (592)
Q Consensus 330 l~~~~~~~~~~~---------~~~~~-d-----~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~------ 388 (592)
+.. .....+.+ +.+.+ | .+||....+++..++...+....+++ .+.+...+..
T Consensus 405 l~k-~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v-----~~~l~~~l~~~l~~~~ 478 (1204)
T 3a6p_A 405 LVK-MGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMA-----GEWLKYQLSTFLDAGS 478 (1204)
T ss_dssp HSC-CCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHHHTCC-----
T ss_pred HHH-hcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-----HHHHHHHHhhhhcccc
Confidence 211 10000000 01100 1 23566777777777766554444333 2333222221
Q ss_pred -------------------CChHHHHHHHHHHHHHHHHchhhh-hhhhh-hHHHHHHhcc---CCCChhHHHHHHHHHHH
Q psy9904 389 -------------------PMPEVRQSSFALLGDLTKACFSHV-HPCIS-DFMPILGQNL---NPDLISVCNNATWAIGE 444 (592)
Q Consensus 389 -------------------~~~~vR~~a~~~l~~la~~~~~~~-~~~l~-~llp~l~~~l---~~~~~~v~~~A~~~Lg~ 444 (592)
+.....++.+..++.+++.+.... .++++ .++|.++..+ +.+++.++..++.++|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~ 558 (1204)
T 3a6p_A 479 VNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSA 558 (1204)
T ss_dssp ------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 011335666677777777663322 23333 2344444432 45678899999998888
Q ss_pred HHHhcCchhhhhHHHHHHHHHHHHcCCC----------CCchHHHHHHHHHHHhhhhCCCchHhHhhhcc-------c--
Q psy9904 445 ISVKLGEDMRRYVPMVINQLIIIINRPN----------TPKTLLENTAITIGRLGYVCPHDVAPLCSSLR-------N-- 505 (592)
Q Consensus 445 ia~~~~~~~~p~~~~il~~L~~~l~~~~----------~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L~-------~-- 505 (592)
+...... -..|++.+++.++..+.... ..++++..|+.++.+++..+++.+.|++..+. .
T Consensus 559 l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~ 637 (1204)
T 3a6p_A 559 LFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE 637 (1204)
T ss_dssp HGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST
T ss_pred HHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Confidence 7765542 23578888888887765411 12478899999999999999988877443221 1
Q ss_pred C-CCchHhHHHHHHHHHHHhh-Cchhhhhh-HHHHHH-HhhccC
Q psy9904 506 I-RDNEEKDSAFRGMCAMITV-NPGGVVQE-FIFFCD-AVASWS 545 (592)
Q Consensus 506 ~-~d~~Ek~~a~~~l~~li~~-~p~~~~~~-~~~~~~-~i~~~~ 545 (592)
. .+..|+..-+.++..+... .|..-... +..++. .+..|.
T Consensus 638 ~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 638 LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 1 2356677777888766433 34322222 444444 333454
No 80
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.67 E-value=2.5e-07 Score=86.92 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=108.3
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHh
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQ 425 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~ 425 (592)
+.+.+..++.+|+.++..-.......+. ...++.++..+++.++.+|..+..+|+.++..........+ ..++|.+++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH
Confidence 4677888999999987544333333332 56889999999999999999999999999976555443333 358999999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.+++++..++..|+|+|+.++..........+. ..++.|..++.+++ ..++++|++++++++.
T Consensus 146 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN--EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHhc
Confidence 999999999999999999998643332222222 57889999998655 7899999999999863
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.62 E-value=1.3e-05 Score=70.91 Aligned_cols=193 Identities=14% Similarity=0.183 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccC
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~ 428 (592)
..+..++..++.++....+-..|.+ ..++-++ -++..-..-+.....+|.+++.-++.+ ..++|.+..+..
T Consensus 47 tV~kNAl~vi~~i~~~~~el~epl~--~kL~vm~---~ksEaIpltqeIa~a~G~la~i~Pe~v----~~vVp~lfanyr 117 (253)
T 2db0_A 47 TVVKNAISIIMVIAKTREDLYEPML--KKLFSLL---KKSEAIPLTQEIAKAFGQMAKEKPELV----KSMIPVLFANYR 117 (253)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHH---HHCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHH--HHHHHHH---hhcccCchHHHHHHHHhHHHHhCHHHH----HhhHHHHHHHHh
Confidence 3567899999999998887777766 3333332 234455666777788888888766654 568899999998
Q ss_pred CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHhHhhhcccC-C
Q psy9904 429 PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNI-R 507 (592)
Q Consensus 429 ~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p~~~~L~~~-~ 507 (592)
-.++++|-|-.++|++|+++.+.. ++.+..-+..++.+++ +.=+-.|..-||-+|.+++..+.||+..|..+ .
T Consensus 118 igd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~ 191 (253)
T 2db0_A 118 IGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFKYVNPFLPRIINLLH 191 (253)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGG
T ss_pred cCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCccccCcchHHHHHHHc
Confidence 889999999999999999877553 4566666777777655 44455666777888888888899998877664 4
Q ss_pred CchH--hHHHHHHHHHHHhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHH
Q psy9904 508 DNEE--KDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILH 560 (592)
Q Consensus 508 d~~E--k~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~ 560 (592)
|..| |.+|..+|..+...||. +-+ .+...+.+++++++.++.....=|.
T Consensus 192 D~deiVRaSaVEtL~~lA~~npk-lRk---ii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 192 DGDEIVRASAVEALVHLATLNDK-LRK---VVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCHH-HHH---HHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHcCHH-HHH---HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555 88999999999999996 333 2335566778887776665554443
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=1.6e-08 Score=87.85 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
|.+|..|+.+|+.+ ++.- ++.|.+.++|++|.+|..|+.+||.+.. +..++.|+..|+|+++
T Consensus 26 ~~vR~~A~~~L~~~----~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~ 87 (131)
T 1te4_A 26 KWVRRDVSTALSRM----GDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSG 87 (131)
T ss_dssp CCSSSSCCSSTTSC----SSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHh----CchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCH
Confidence 55777777777654 3221 3666778899999999999999998753 3468888899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhh
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~ 224 (592)
.||..|+|+|+++.. ++.+|.|...++|++..||..++++|++
T Consensus 88 ~VR~~A~~aL~~~~~-----------------------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 88 FVRSGAARSLEQIGG-----------------------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCS-----------------------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCc-----------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999998741 1234455556677788899988888764
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.47 E-value=2e-06 Score=85.28 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=111.6
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCC-CChHHHHHHHHHHHHHHHHchhhhhhhhh-hHHHHH
Q psy9904 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQD-PMPEVRQSSFALLGDLTKACFSHVHPCIS-DFMPIL 423 (592)
Q Consensus 346 ~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~-~~~~vR~~a~~~l~~la~~~~~~~~~~l~-~llp~l 423 (592)
++.+++..|+.+|+.+++.-.. ....+-....++.++.++++ ++..+|..|+.+|+.+++..+.....++. ..+|.|
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L 172 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence 3577889999999999875322 22222224678888888874 57899999999999999877665555553 688999
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 424 GQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP-MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 424 ~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~-~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
+..+++.+..++..|+|+|+.++....+...-.+. .+++.|+.+|.+++ ..+++.++.+|+.|...++
T Consensus 173 ~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCCh
Confidence 99998889999999999999998763333222333 68899999998876 7899999999999987643
No 84
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.7e-05 Score=87.27 Aligned_cols=373 Identities=13% Similarity=0.019 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHHHhhhc--hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch--hchhhhHhhHHHHHHHhccC
Q psy9904 74 NLRKCSAAALDVLANVFR--EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM--NGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~--~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~--~~i~~~l~~lvp~l~~~L~D 149 (592)
.+|.-|+.+|..+...-+ +.-+..+.+.+..++.+++-..|+-|+.+|+.++-... +.+. .-+..++.|+..+++
T Consensus 309 ~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~-~d~~~L~~Lv~llk~ 387 (778)
T 3opb_A 309 DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR-SNESFTEILLTMIKS 387 (778)
T ss_dssp GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH-HCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH-hCHHHHHHHHHHHhC
Confidence 367778888888876543 23356688888888888776679999999999986543 2222 225678888888885
Q ss_pred -ChHHHHHHHHHHHHHHHHHhhcCCC-c---cchHHHHHH-----------HHccc---cCCccch--hhhHHHHHHhcC
Q psy9904 150 -KKALVRAITCWTLSRYSHWVVSQPH-D---SYLKPLMTE-----------MLGCM---NGMVPHL--NELVPFLITCLS 208 (592)
Q Consensus 150 -~~~~VR~~a~~aL~~l~~~~~~~~~-~---~~l~~ll~~-----------Ll~~l---~~~vq~l--~~l~p~l~~il~ 208 (592)
.+..+.+.+...|++++........ . .+|...... +.+.. ..+.+.+ ...+|.|..+++
T Consensus 388 ~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~ 467 (778)
T 3opb_A 388 QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMH 467 (778)
T ss_dssp TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGG
T ss_pred CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHc
Confidence 5566788888888888875432110 1 111111100 00000 0000111 457788888887
Q ss_pred chhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhccc
Q psy9904 209 DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKD 288 (592)
Q Consensus 209 d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d 288 (592)
+...-+|..++++|.+++.. .++. +.+++ +..+++|++.+....+
T Consensus 468 S~s~~~re~A~~aL~nLS~d----------------~~~R-------~~lvq------------qGal~~LL~lL~s~~~ 512 (778)
T 3opb_A 468 NLSPNCKQQVVRIIYNITRS----------------KNFI-------PQLAQ------------QGAVKIILEYLANKQD 512 (778)
T ss_dssp GSCHHHHHHHHHHHHHHHTS----------------GGGH-------HHHHH------------TTHHHHHHHHTTCC--
T ss_pred CCCHHHHHHHHHHHHHHcCC----------------HHHH-------HHHHH------------CCCHHHHHHHHhcCCC
Confidence 77777788888887776421 0110 11111 2335666665543211
Q ss_pred C-CccchHHHHHHHHHHHHHhh--ccccccH-HHHHHHHHHHHHHHHHHHhhcCCCCCC------CCCChhH-HHHHHHH
Q psy9904 289 E-DKDLFPLLECLSSVATALQA--GFLPYCE-PVYRRCVSLIEQTLNQHMANSQNPEQF------DAPDKDF-MIVALDL 357 (592)
Q Consensus 289 ~-~~~~~~~~e~l~~ia~~~g~--~f~py~~-~v~~~~~~~l~~~l~~~~~~~~~~~~~------~~~d~~~-~~~ald~ 357 (592)
. ++-...+..+|..++....+ .|..|.. ..++.++.++.. +++.. +.+-... ...|+-+
T Consensus 513 ~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~----------~~~~~~~~l~~~~~~~~l~~feAL~A 582 (778)
T 3opb_A 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR----------STPVDDNPLHNDEQIKLTDNYEALLA 582 (778)
T ss_dssp -CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCC----------SSSCSSCC---CCCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCC----------CCCcccccccccccccHHHHHHHHHH
Confidence 1 10124677777777644332 2222211 233333333221 01100 0001111 3457778
Q ss_pred HHHHHhhh---hhhhHh-hhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh-hhhh----hh---HHHHHHh
Q psy9904 358 LSGLAEGL---DMHIDS-LVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV-HPCI----SD---FMPILGQ 425 (592)
Q Consensus 358 l~~l~~~l---g~~~~~-~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~-~~~l----~~---llp~l~~ 425 (592)
|..++..- |+.... .+.....++.+...+.+.+..+|+.|..++.+|+.. +..+ ..+. +. =++.++.
T Consensus 583 LTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~ 661 (778)
T 3opb_A 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVK 661 (778)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHH
T ss_pred HHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHH
Confidence 88887753 223322 232124789999999888999999999999999963 3322 2332 11 2788888
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhcCchhhhhH--HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC
Q psy9904 426 NLNPDLISVCNNATWAIGEISVKLGEDMRRYV--PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCP 493 (592)
Q Consensus 426 ~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~--~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~ 493 (592)
.++.++.++|.+|+|+|+.++...+......+ ...++.++.++++...+..++.+++.++..|....|
T Consensus 662 Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 662 LLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999999998643322112222 256777788887633348999999999999986444
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.43 E-value=6.9e-07 Score=88.20 Aligned_cols=196 Identities=13% Similarity=0.172 Sum_probs=118.7
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhchh-----chhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy9904 102 LKETLFHHDWEIKESGILALGAIAEGCMN-----GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDS 176 (592)
Q Consensus 102 l~~~l~s~~~~~R~aa~~aLg~iaeg~~~-----~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~ 176 (592)
+.+.+.|.+|..|..|+..|..+.+.... .....+..+.+.+.+.+.|++..|...++.++..+++.+....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~--- 90 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS--- 90 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh---
Confidence 45788999999999999999888776442 1222355677888889999999999999999998876543210
Q ss_pred chHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHH
Q psy9904 177 YLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIG 256 (592)
Q Consensus 177 ~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~ 256 (592)
..+.
T Consensus 91 ----------------------------------------------~~~~------------------------------ 94 (278)
T 4ffb_C 91 ----------------------------------------------LKNA------------------------------ 94 (278)
T ss_dssp ----------------------------------------------CCHH------------------------------
T ss_pred ----------------------------------------------cccc------------------------------
Confidence 0000
Q ss_pred HHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Q psy9904 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMA 335 (592)
Q Consensus 257 ~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~ 335 (592)
.+ ..++..++|.|+.+. +.+..+. +..+++|+..++...+. ...+ +..+...+.
T Consensus 95 --------~~--~~~~~~~l~~lveK~--l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~----~e~l~~~l~---- 149 (278)
T 4ffb_C 95 --------HN--ITLISTWTPLLVEKG--LTSSRATTKTQSMSCILSLCGLDTS-----ITQS----VELVIPFFE---- 149 (278)
T ss_dssp --------HH--HHHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHTSSS-----SHHH----HHHHGGGGG----
T ss_pred --------hh--HHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHHHHhcCc-----HHHH----HHHHHHHHh----
Confidence 00 034455566666541 1122212 23456666555433221 1222 122222221
Q ss_pred hcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhh---hHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhh
Q psy9904 336 NSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH---IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHV 412 (592)
Q Consensus 336 ~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~---~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~ 412 (592)
+ .....+..++.+|..++...|.. ..+.+ +.+++.+..++.|.+++||..|..+++.+.+.+|+.+
T Consensus 150 ---~------Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 150 ---K------KLPKLIAAAANCVYELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp ---C------SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred ---c------cCHHHHHHHHHHHHHHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 0 12455667788888888777743 23334 4567788899999999999999999999999888654
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.26 E-value=6.5e-05 Score=66.58 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=121.0
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
..++..++..|.|.-..|+..|+.++..+++..++...|.+..++-.+-+ ++.....+....++|.++..-++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~Pe~--- 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEKPEL--- 104 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhCHHH---
Confidence 46788899999999999999999999999999999998888887776655 356667778888999998755443
Q ss_pred hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh----HhhhcccCCCchHhHHHHHHHHHHHhhCchhhh
Q psy9904 456 YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP----LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVV 531 (592)
Q Consensus 456 ~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p----~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~ 531 (592)
+..++|.+..-..-. +..++-|...++++++..+|+.+.. +...|. -+|..+|.+|+.-+..+...+|.-+.
T Consensus 105 -v~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt-skd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 105 -VKSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLMASIVRDFMSMLS-SKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp -HHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS-CSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred -HHhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhccCccccC
Confidence 344455555544433 4889999999999999999975443 333343 45677899999999988888888888
Q ss_pred hhHHHHHHHh
Q psy9904 532 QEFIFFCDAV 541 (592)
Q Consensus 532 ~~~~~~~~~i 541 (592)
|.++.++.-+
T Consensus 181 PfLprL~aLL 190 (253)
T 2db0_A 181 PFLPRIINLL 190 (253)
T ss_dssp GGHHHHHGGG
T ss_pred cchHHHHHHH
Confidence 9888776533
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.21 E-value=3.3e-06 Score=87.37 Aligned_cols=138 Identities=15% Similarity=0.188 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-.||.++|++|+.+ ..++++ +..+..++ ..+..+.|.+|++|+++|..+ .+.+.. ++.++|.++.+|+|++-
T Consensus 242 APVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSH
T ss_pred eehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCccc
Confidence 46999999999999 888865 33333333 455788999999999999998 332223 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc-cC-----Ccc-----------------chhhhHHHHHHhcCc
Q psy9904 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM-NG-----MVP-----------------HLNELVPFLITCLSD 209 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l-~~-----~vq-----------------~l~~l~p~l~~il~d 209 (592)
.||..|+.+|--++ ....++.++..+++++ +. .+. ..++++|.|-+.+.|
T Consensus 314 DVRAVAAetLiPIA-------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHHHTTSC-------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHHHhhhhc-------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcC
Confidence 99999999988776 2355777787777777 10 000 125788889999988
Q ss_pred hhhHHHHHHHhhhhhh
Q psy9904 210 KKALVRAITCWTLSRY 225 (592)
Q Consensus 210 ~~~~vr~~a~~~L~~~ 225 (592)
.-+-||..+..++..+
T Consensus 387 tITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNL 402 (800)
T ss_dssp SSHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHHHHH
Confidence 8888999988887765
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00029 Score=77.56 Aligned_cols=336 Identities=13% Similarity=0.112 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhhhc--hhhh--HhHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchhc-------------------
Q psy9904 76 RKCSAAALDVLANVFR--EELL--PVLLPILKETLFH-HDWEIKESGILALGAIAEGCMNG------------------- 131 (592)
Q Consensus 76 Rk~aa~~L~~la~~~~--~~vl--~~ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~------------------- 131 (592)
|+-|..+|..++..-. +.+. +.+++.|.+.+++ .+...-++++..|+.+.......
T Consensus 351 ~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p 430 (778)
T 3opb_A 351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXP 430 (778)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCc
Confidence 7788899999886432 1111 3456666666664 55667888888888877643210
Q ss_pred --------------h----hhh--HhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccC
Q psy9904 132 --------------M----VPH--LNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG 191 (592)
Q Consensus 132 --------------i----~~~--l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~ 191 (592)
+ ... -..++|.|+..++++++.+|..|+|+|++++..-. .-..++.
T Consensus 431 ~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~------~R~~lvq-------- 496 (778)
T 3opb_A 431 AADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN------FIPQLAQ-------- 496 (778)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG------GHHHHHH--------
T ss_pred ccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH------HHHHHHH--------
Confidence 0 001 12489999999999999999999999999985421 1111110
Q ss_pred CccchhhhHHHHHHhcCchhhH---HHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCC
Q psy9904 192 MVPHLNELVPFLITCLSDKKAL---VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNK 268 (592)
Q Consensus 192 ~vq~l~~l~p~l~~il~d~~~~---vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~ 268 (592)
...+|.|.+++.+.... +|..|+.+|.++.-.. ... + ..+.. .
T Consensus 497 -----qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~---------------np~----------~--~f~~~-~- 542 (778)
T 3opb_A 497 -----QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT---------------NPG----------L--IFKKY-S- 542 (778)
T ss_dssp -----TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS---------------CHH----------H--HSSSS-C-
T ss_pred -----CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC---------------CHH----------H--HcCCC-c-
Confidence 12233333333322222 5666777776652100 000 0 01100 0
Q ss_pred hhhHhhhhHHHHHHHhhcccCC---------cc---chHHHHHHHHHHHHHh---hccccccHHHHH--HHHHHHHHHHH
Q psy9904 269 PEYISLLMPPLIQKWNILKDED---------KD---LFPLLECLSSVATALQ---AGFLPYCEPVYR--RCVSLIEQTLN 331 (592)
Q Consensus 269 ~~y~~~lmp~L~~~~~~~~d~~---------~~---~~~~~e~l~~ia~~~g---~~f~py~~~v~~--~~~~~l~~~l~ 331 (592)
. -..+|+|++.+....... .. .+.++-||..+|..-+ ++. -..++. ..++.|...+.
T Consensus 543 -~--~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~---r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 543 -A--LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV---CKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp -S--TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH---HHHHHHSHHHHHHHHHGGG
T ss_pred -c--ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH---HHHHHHhcCHHHHHHHHHh
Confidence 1 156788887654101110 11 2355566666665321 121 122332 23444444331
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhh-Hhhhcc--Cc---hHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy9904 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHI-DSLVSN--SN---IMHLLYQCMQDPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 332 ~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~-~~~~~~--~~---l~~~l~~~l~~~~~~vR~~a~~~l~~la 405 (592)
.+...++..|+++++.++..-. .+ ..++.. +. -++.++..++..+.++|+.|.++|+.++
T Consensus 617 -------------s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 617 -------------DENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 1235678899999999996432 12 233211 11 2778889999999999999999999997
Q ss_pred HHchhhhhhhhh--hHHHHHHhccCC--CChhHHHHHHHHHHHHHHhc----C-chhhhhH--HHHHHHHHHHHcCCCCC
Q psy9904 406 KACFSHVHPCIS--DFMPILGQNLNP--DLISVCNNATWAIGEISVKL----G-EDMRRYV--PMVINQLIIIINRPNTP 474 (592)
Q Consensus 406 ~~~~~~~~~~l~--~llp~l~~~l~~--~~~~v~~~A~~~Lg~ia~~~----~-~~~~p~~--~~il~~L~~~l~~~~~~ 474 (592)
...+......+. ..+..++..+++ ++.+++.+++.++..++... + +.+..+. ..+...|.++++.++..
T Consensus 683 s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~ 762 (778)
T 3opb_A 683 TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSG 762 (778)
T ss_dssp HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSC
T ss_pred CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCch
Confidence 655543333332 355666666655 78899999999999998632 2 3455555 46788888888877654
Q ss_pred chHHH
Q psy9904 475 KTLLE 479 (592)
Q Consensus 475 ~~v~~ 479 (592)
....+
T Consensus 763 ~e~~~ 767 (778)
T 3opb_A 763 PEFSA 767 (778)
T ss_dssp SSTTS
T ss_pred HHHHH
Confidence 44443
No 89
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.16 E-value=1.5e-06 Score=75.21 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCCh
Q psy9904 72 DWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKK 151 (592)
Q Consensus 72 ~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~ 151 (592)
+|.+|..|+.+|+.+.. +..++.|...++|++|.+|.+|+.+||.+.. +..+|.|++.|+|++
T Consensus 55 ~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~ 117 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT 117 (131)
T ss_dssp CHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC
Confidence 47899999999887653 2335555566678999999999999998752 457888999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9904 152 ALVRAITCWTLSRY 165 (592)
Q Consensus 152 ~~VR~~a~~aL~~l 165 (592)
+.||..|+++|+++
T Consensus 118 ~~vr~~A~~aL~~i 131 (131)
T 1te4_A 118 GFARKVAVNYLETH 131 (131)
T ss_dssp THHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.12 E-value=0.00018 Score=69.37 Aligned_cols=194 Identities=10% Similarity=0.091 Sum_probs=122.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q psy9904 101 ILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKP 180 (592)
Q Consensus 101 ~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ 180 (592)
-+...+.+.+|..|.+|+-.|-...+..++.+...++-+++.+.-.+.|+++.|-..++..|..+.+.+.+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~--------- 120 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD--------- 120 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh---------
Confidence 34455678899999999999888776666555555666666665566677777766666655555443321
Q ss_pred HHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHH
Q psy9904 181 LMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLAD 260 (592)
Q Consensus 181 ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~ 260 (592)
T Consensus 121 -------------------------------------------------------------------------------- 120 (266)
T 2of3_A 121 -------------------------------------------------------------------------------- 120 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccCCChhh-HhhhhHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcC
Q psy9904 261 SVGHHLNKPEY-ISLLMPPLIQKWNILKDEDKD-LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQ 338 (592)
Q Consensus 261 ~~g~~~~~~~y-~~~lmp~L~~~~~~~~d~~~~-~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~ 338 (592)
.|..+. +| ...++|.|+.++. |.... +..+.+.+..+...++. ..++ +.+...+ .++
T Consensus 121 -~~y~~~--~~ea~~~lP~LveKlG---d~k~~vR~~~r~il~~l~~v~~~------~~v~----~~l~~g~----ksK- 179 (266)
T 2of3_A 121 -TETPMS--QEEVSAFVPYLLLKTG---EAKDNMRTSVRDIVNVLSDVVGP------LKMT----PMLLDAL----KSK- 179 (266)
T ss_dssp -TTCCCC--HHHHHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHHCH------HHHH----HHHHHGG----GCS-
T ss_pred -ccccch--HHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHCCH------HHHH----HHHHHHH----ccC-
Confidence 111122 23 3556788887653 22111 12344444444433221 1122 2222222 111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchH---HHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhh
Q psy9904 339 NPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIM---HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPC 415 (592)
Q Consensus 339 ~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~---~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~ 415 (592)
....|..+++.+..+++..|... ...+ +.+..++.|++.+||..|+.++..+-.+.|+.+..+
T Consensus 180 --------N~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 180 --------NARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 13346778899999998888652 2345 999999999999999999999999999999998887
Q ss_pred hhh
Q psy9904 416 ISD 418 (592)
Q Consensus 416 l~~ 418 (592)
+++
T Consensus 246 lg~ 248 (266)
T 2of3_A 246 AGR 248 (266)
T ss_dssp HCC
T ss_pred Hhc
Confidence 764
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.08 E-value=6.7e-05 Score=76.37 Aligned_cols=181 Identities=14% Similarity=0.175 Sum_probs=121.6
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHH-hCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHH
Q psy9904 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC-MQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPIL 423 (592)
Q Consensus 347 d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~-l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l 423 (592)
+.+.+..++.+|..++..-.......+.....++.++.. ++..+.++++.+..+|.+|+..+.+.-.... ...+|.|
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L 219 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH
Confidence 456777888888888754222222222224567777776 4566789999999999999985533222222 4688999
Q ss_pred HhccCCCCh----hHHHHHHHHHHHHHHh--cCchhhhhH--HHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCc
Q psy9904 424 GQNLNPDLI----SVCNNATWAIGEISVK--LGEDMRRYV--PMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495 (592)
Q Consensus 424 ~~~l~~~~~----~v~~~A~~~Lg~ia~~--~~~~~~p~~--~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~ 495 (592)
++.+..... +++.+|+|+|..++.. ...+....+ ...++.|+.+|.+++ ..++++|+++|+.++..+++.
T Consensus 220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC--hHHHHHHHHHHHHHhCCCHHH
Confidence 888876543 5899999999999863 222222222 247899999998755 789999999999998655443
Q ss_pred hH---------hHhhhcccCCCchHhHHHHHHHHHHHhhCchhh
Q psy9904 496 VA---------PLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV 530 (592)
Q Consensus 496 ~~---------p~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~ 530 (592)
.. +++..|. -.+..-|..|..+|.+|...+|...
T Consensus 298 ~~~i~~~G~i~~Lv~LL~-s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 298 QEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHTTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 21 1333222 2233337889999999998888764
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.4e-05 Score=75.92 Aligned_cols=151 Identities=12% Similarity=0.100 Sum_probs=102.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhch-----hh---hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh------chhh
Q psy9904 69 SLSDWNLRKCSAAALDVLANVFRE-----EL---LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN------GMVP 134 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~~~~-----~v---l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~------~i~~ 134 (592)
....|..|+.|...|..+....+. .. +-.+.+.+...+.|.+..+...|+.++..+++.+.. ....
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 456899999999888776654431 11 344567788889999999999999999999987652 2335
Q ss_pred hHhhHHHHHHH-hccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc---cCCcc----------------
Q psy9904 135 HLNELVPFLIT-CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP---------------- 194 (592)
Q Consensus 135 ~l~~lvp~l~~-~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq---------------- 194 (592)
+...++|.++. +|.|+.+.+|..+..++-.+++... ....+++.++..+ |+++.
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 67788998886 4899999999999999988876432 2234455555555 22221
Q ss_pred -------chhhhHHHHHHhcCchhhHHHHHHHhhhhhh
Q psy9904 195 -------HLNELVPFLITCLSDKKALVRAITCWTLSRY 225 (592)
Q Consensus 195 -------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~ 225 (592)
.++.+++.+..++.|.+.-||..|...+..+
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 0133455566666676777776655555443
No 93
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.99 E-value=0.0012 Score=75.95 Aligned_cols=210 Identities=8% Similarity=0.028 Sum_probs=129.7
Q ss_pred hHhhhccCc-hHHHHHHHhCCCCh-HHHHH-HHHHHHHHHHHchhhhhhhhhhHHHHHHhccC-CCChhHHHHHHHHHHH
Q psy9904 369 IDSLVSNSN-IMHLLYQCMQDPMP-EVRQS-SFALLGDLTKACFSHVHPCISDFMPILGQNLN-PDLISVCNNATWAIGE 444 (592)
Q Consensus 369 ~~~~~~~~~-l~~~l~~~l~~~~~-~vR~~-a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ 444 (592)
+.||+ +. ++|.++...+..+. ++.+. +..++..++.... -..+++.++..+.+..+ +.+. +|..++--+-.
T Consensus 753 l~~~~--~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~--~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 753 LVPYL--VDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI--RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp HHHHH--TTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC--CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 67777 44 88888777665543 34443 4444444432111 11233444444444344 3466 88877766655
Q ss_pred HHHhcCchhh-hhHHHHHHHHHHHHcCCCCC-chHHHHHHHHHHHhhhhC-C-CchHhHhhhcccCC-------------
Q psy9904 445 ISVKLGEDMR-RYVPMVINQLIIIINRPNTP-KTLLENTAITIGRLGYVC-P-HDVAPLCSSLRNIR------------- 507 (592)
Q Consensus 445 ia~~~~~~~~-p~~~~il~~L~~~l~~~~~~-~~v~~na~~~lgrl~~~~-~-~~~~p~~~~L~~~~------------- 507 (592)
+.-+----+. .-...++..+..+|.++ . .+|++.|+.|++-+.... + ..+..++..+...-
T Consensus 828 ~~f~n~f~l~~~~~~~i~~~v~~~L~D~--q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~ 905 (997)
T 1vsy_5 828 FLSAELLQLTEEEKNKILEFVVSNLYNE--QFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL 905 (997)
T ss_dssp HHHHHTTTSCTTHHHHTHHHHTTTTTCS--SCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc
Confidence 5432110111 12246667777777653 4 689999999999887655 4 22333333332211
Q ss_pred --CchHhHHHHHHHHHHHhhCchhh--hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q psy9904 508 --DNEEKDSAFRGMCAMITVNPGGV--VQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLR 583 (592)
Q Consensus 508 --d~~Ek~~a~~~l~~li~~~p~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~ 583 (592)
+...|..|.-|||.+|...|-.+ .+-+|.++..++++...+.-++.++++.+..||...-+ +|..--..|.+++.
T Consensus 906 ~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH~D-~W~~~k~~Ft~eqL 984 (997)
T 1vsy_5 906 SKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRAD-TWKFDRASFNTEEL 984 (997)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHTST-THHHHGGGCCSSTT
T ss_pred chHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhccch-hHHHHHHhcCHHHH
Confidence 11346679999999999999887 45688888888887543344899999999999988875 89987777776665
Q ss_pred HHH
Q psy9904 584 DRL 586 (592)
Q Consensus 584 ~~l 586 (592)
+-|
T Consensus 985 ~~l 987 (997)
T 1vsy_5 985 EDL 987 (997)
T ss_dssp GGG
T ss_pred HHH
Confidence 443
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.83 E-value=0.0055 Score=58.92 Aligned_cols=199 Identities=10% Similarity=0.064 Sum_probs=138.5
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcC---chhhhh-HHH
Q psy9904 384 QCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG---EDMRRY-VPM 459 (592)
Q Consensus 384 ~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~---~~~~p~-~~~ 459 (592)
..+-+.+...|..++..|.......+..+...++-+++-+.-.+-+.++.|...++-.|..+...++ ..+.+| ...
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3344557788889998888877766666666667677766656667889999999988888766554 346666 478
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCC-CchHh-HhhhcccCCCchHhHHHHHHHHHHHhh-CchhhhhhH--
Q psy9904 460 VINQLIIIINRPNTPKTLLENTAITIGRLGYVCP-HDVAP-LCSSLRNIRDNEEKDSAFRGMCAMITV-NPGGVVQEF-- 534 (592)
Q Consensus 460 il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~-~~~~p-~~~~L~~~~d~~Ek~~a~~~l~~li~~-~p~~~~~~~-- 534 (592)
++|.|+.-+.++. ..+++.+-..+-.+...+| ..+.+ ++..+.. ++.-.|..++..+..++.. +.. -...+
T Consensus 133 ~lP~LveKlGd~k--~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~-~~~~l~~ 208 (266)
T 2of3_A 133 FVPYLLLKTGEAK--DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS-PLKSLSV 208 (266)
T ss_dssp HHHHHHHGGGCSS--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG-GGGGGCH
T ss_pred HHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC-ccccccc
Confidence 9999999887654 7788888777766665444 33555 4565543 3455688899999999964 332 12223
Q ss_pred -HHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhh
Q psy9904 535 -IFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMY 590 (592)
Q Consensus 535 -~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 590 (592)
+.++.. ..+++.++++...+.+.......|+.-| .+++.||+..+.-|.+++
T Consensus 209 ~~~ia~l---l~D~d~~VR~aAl~~lve~y~~~Gd~v~-k~lg~L~~~~~~~l~er~ 261 (266)
T 2of3_A 209 EKTVAPF---VGDKDVNVRNAAINVLVACFKFEGDQMW-KAAGRMADKDKSLVEERI 261 (266)
T ss_dssp HHHHGGG---GGCSSHHHHHHHHHHHHHHHHHHTTHHH-HHHCCCCHHHHHHHHHHH
T ss_pred hHHHHHH---HcCCCHHHHHHHHHHHHHHHHHhhHHHH-HHHhcCCHHHHHHHHHHH
Confidence 333332 3467888898877777766667798545 567999999998887654
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.54 E-value=0.00079 Score=67.92 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
..+||-....+-.++.. +++++ -+.+.+.+=++|+++.+|-.|+.+|+.|.+.- .++.+.+.+.++|.|.+|
T Consensus 82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~p 153 (355)
T 3tjz_B 82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVP 153 (355)
T ss_dssp HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCH
Confidence 44666666666555554 34444 55555666666666666666666666665422 244566666666667777
Q ss_pred HHHHHHHHHHHHHH
Q psy9904 153 LVRAITCWTLSRYS 166 (592)
Q Consensus 153 ~VR~~a~~aL~~l~ 166 (592)
.||.+|+.|..++.
T Consensus 154 yVRk~A~l~~~kL~ 167 (355)
T 3tjz_B 154 SVSSSALVSSLHLL 167 (355)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77776666666554
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.51 E-value=0.00098 Score=69.33 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=82.1
Q ss_pred ccccchHHHHHHHHHHHHHhhhch-----hhh--HhHHHHHHH--------hhcCC-ChhHHHHHHHHHHHHHhhchhch
Q psy9904 69 SLSDWNLRKCSAAALDVLANVFRE-----ELL--PVLLPILKE--------TLFHH-DWEIKESGILALGAIAEGCMNGM 132 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~~~~-----~vl--~~ll~~l~~--------~l~s~-~~~~R~aa~~aLg~iaeg~~~~i 132 (592)
....|.+|++||.+|..+...-|. ... .....+++- +..|+ -..+||++..+||++ -..++.
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence 346799999999999999876641 001 122222221 12232 258999999999999 666654
Q ss_pred hhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhh
Q psy9904 133 VPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKA 212 (592)
Q Consensus 133 ~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~ 212 (592)
-.++-.++..+..+.|.||..++-.|.-+.+ + ... ++.+++.++ ..|.|.+-
T Consensus 262 ----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D-L----L~~-Ld~Vv~aVL------------------~GL~D~DD 313 (800)
T 3oc3_A 262 ----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE-F----VED-KDGLCRKLV------------------SLLSSPDE 313 (800)
T ss_dssp ----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG-G----CCC-HHHHHHHHH------------------HHTTCSSH
T ss_pred ----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH-H----HHH-HHHHHHHHH------------------hhcCCccc
Confidence 2455555567788899999999999887611 1 111 444444444 44566677
Q ss_pred HHHHHHHhhhhhh
Q psy9904 213 LVRAITCWTLSRY 225 (592)
Q Consensus 213 ~vr~~a~~~L~~~ 225 (592)
-||+.|+.+|.-+
T Consensus 314 DVRAVAAetLiPI 326 (800)
T 3oc3_A 314 DIKLLSAELLCHF 326 (800)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhh
Confidence 7888887777544
No 97
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.35 E-value=0.0017 Score=60.65 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=90.1
Q ss_pred hHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHH-hccCChHHHHHHHHHHHHHHHHHhhcCC
Q psy9904 95 LPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLIT-CLSDKKALVRAITCWTLSRYSHWVVSQP 173 (592)
Q Consensus 95 l~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~-~L~D~~~~VR~~a~~aL~~l~~~~~~~~ 173 (592)
.+.++++...+.+++.-.+|..|+.+||.. . ..+.+++.+.. .-.|++++||+.++.+++.++....++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 467788888888999899999999999987 2 23678888887 777999999999999999998744332
Q ss_pred CccchHHHHHHHHccccCCcc------------------chhhhHHHHHHhcCchhhHHHHHHHhhhhhhhh
Q psy9904 174 HDSYLKPLMTEMLGCMNGMVP------------------HLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227 (592)
Q Consensus 174 ~~~~l~~ll~~Ll~~l~~~vq------------------~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~ 227 (592)
. ..++|....+.-|..|. ..+.++|.+..+..|++.+||....|.|..|++
T Consensus 139 --~-~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 --K-ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp --T-THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred --H-HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 1 23344444443321111 225688999999999999999999999998865
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.32 E-value=0.0088 Score=56.59 Aligned_cols=111 Identities=7% Similarity=-0.083 Sum_probs=82.7
Q ss_pred hHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 378 IMHLLYQCMQDPMP--EVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 378 l~~~l~~~l~~~~~--~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
-++.++..|+..++ +++..|...+..++..-...-.... ...+|.|++.|+.++..++..|+|+|+.++....+ -+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND-NK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 46778888887777 8888898999998876433222222 35679999999999999999999999999863222 22
Q ss_pred hhH--HHHHHHHHHHHcC-CCCCchHHHHHHHHHHHhhhh
Q psy9904 455 RYV--PMVINQLIIIINR-PNTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 455 p~~--~~il~~L~~~l~~-~~~~~~v~~na~~~lgrl~~~ 491 (592)
..+ ...+|.|+.+|.+ ++ ..++++++.++..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~--~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRD--LETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCC--HHHHHHHHHHHHHHHcC
Confidence 222 2578999999974 34 78999999999988753
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.18 E-value=0.028 Score=56.58 Aligned_cols=304 Identities=9% Similarity=0.096 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhh--hchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHH
Q psy9904 78 CSAAALDVLANV--FREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVR 155 (592)
Q Consensus 78 ~aa~~L~~la~~--~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR 155 (592)
+-.+.|-.+..+ +|..-...+++-+.+.+++++...|+-+.+++..++....+. + -+...+.+=++|+++.+|
T Consensus 47 ~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~----i-Lv~Nsl~kDl~~~N~~iR 121 (355)
T 3tjz_B 47 ILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV----I-IVTSSLTKDMTGKEDSYR 121 (355)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG----G-GGHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH----H-HHHHHHHhhcCCCcHhHH
Confidence 334444444443 333335577888889999999999999999999888763221 2 467778888999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcc
Q psy9904 156 AITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHD 235 (592)
Q Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~ 235 (592)
..|..+|+++.. .+.+ +.+.+++...+.|.++.||..|+-+..++...
T Consensus 122 ~lALRtL~~I~~-------~~m~------------------~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~------- 169 (355)
T 3tjz_B 122 GPAVRALCQITD-------STML------------------QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC------- 169 (355)
T ss_dssp HHHHHHHHHHCC-------TTTH------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHhcCCC-------HHHH------------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-------
Confidence 999999999853 1222 45667777788898999999877665443110
Q ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhcccccc
Q psy9904 236 SYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYC 315 (592)
Q Consensus 236 ~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~ 315 (592)
.|+.+...++.+.+. +.| ++-.....|++.+......+
T Consensus 170 --------------------------------~pe~v~~~~~~l~~l---l~d--~n~~V~~~Al~lL~ei~~~d----- 207 (355)
T 3tjz_B 170 --------------------------------SFDVVKRWVNEAQEA---ASS--DNIMVQYHALGLLYHVRKND----- 207 (355)
T ss_dssp --------------------------------CHHHHHTTHHHHHHH---TTC--SSHHHHHHHHHHHHHHHTTC-----
T ss_pred --------------------------------CHHHHHHHHHHHHHH---hcC--CCccHHHHHHHHHHHHHhhc-----
Confidence 012222223333322 112 22112233333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHH
Q psy9904 316 EPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQ 395 (592)
Q Consensus 316 ~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~ 395 (592)
...+. +++. .+.. .+ . ...+- -+.++..+ ..++.+=.|-. ...+++.+..++++.++.|.-
T Consensus 208 ~~a~~---kLv~-~l~~------~~----l-~~~~~--q~~llr~l-~~~~~~d~~~~-~~~~~~~l~~~L~~~~~aVvy 268 (355)
T 3tjz_B 208 RLAVS---KMIS-KFTR------HG----L-KSPFA--YCMMIRVA-SRQLEDEDGSR-DSPLFDFIESCLRNKHEMVVY 268 (355)
T ss_dssp HHHHH---HHHH-HHHS------SC----C-SCHHH--HHHHHHHH-TCC------------------CCCCCSSHHHHH
T ss_pred hHHHH---HHHH-HHhc------CC----C-cChHH--HHHHHHHH-HHhccccchhh-HHHHHHHHHHHHcCCChHHHH
Confidence 11111 1111 1110 00 0 01221 11122222 12222111111 145778888888988888888
Q ss_pred HHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCCCCc
Q psy9904 396 SSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPK 475 (592)
Q Consensus 396 ~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~~~~ 475 (592)
.|..++-.+.......+.+. -.++..+ +...++.+|-.|+-.|..++...+..+..+-. .+..++++++ +
T Consensus 269 Ea~k~I~~l~~~~~~~~~~a-~~~L~~f---Lss~d~niryvaLr~L~~l~~~~P~~v~~~n~----~ie~li~d~n--~ 338 (355)
T 3tjz_B 269 EAASAIVNLPGCSAKELAPA-VSVLQLF---CSSPKAALRYAAVRTLNKVAMKHPSAVTACNL----DLENLVTDAN--R 338 (355)
T ss_dssp HHHHHHTC-----------C-CCTHHHH---HHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHHhccCCCHHHHHHH-HHHHHHH---HcCCCchHHHHHHHHHHHHHHHCcHHHHHHHH----HHHHHccCCc--H
Confidence 88877766644222222221 1223333 33456678888888888888766555544433 3445555554 6
Q ss_pred hHHHHHHHHHHHhh
Q psy9904 476 TLLENTAITIGRLG 489 (592)
Q Consensus 476 ~v~~na~~~lgrl~ 489 (592)
++.--|+.|+-+-|
T Consensus 339 sI~t~Aittllktg 352 (355)
T 3tjz_B 339 SIATLAITTLLKTG 352 (355)
T ss_dssp --------------
T ss_pred hHHHHHHHHhhhcc
Confidence 66666666555443
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.09 E-value=0.023 Score=63.09 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=54.5
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchh-chhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCMN-GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~-~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~ 169 (592)
.++|.|+. ++|+++..|..|+.||+.++++... .+.-+-..+.+.+..+|.|++..||.+|+++|++++..-
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34566654 7999999999999999999986442 111222334456677899999999999999999998653
No 101
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.88 E-value=0.17 Score=47.02 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=112.3
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhh-hhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH-PCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR 455 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~-~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p 455 (592)
..+..+...+.+.++.++..++.+|+++.+..+.... .-+..++|.+++.+.+++..|.-.|+.+++.+....+-. ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence 4577888899999999999999999999998755443 457889999999999999999999999999998765422 22
Q ss_pred hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCC-chHhHhhhcccCCCchHhHHHHHHHHHHHhh
Q psy9904 456 YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH-DVAPLCSSLRNIRDNEEKDSAFRGMCAMITV 525 (592)
Q Consensus 456 ~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~-~~~p~~~~L~~~~d~~Ek~~a~~~l~~li~~ 525 (592)
-+..+..++..++.+++ .-+.+-++..+|.+-...+. .+..|+..|..-+|-..|..+++.|..+...
T Consensus 112 ~y~Kl~~aL~dlik~~~--~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPD--DMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCC--chHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 45567888888888554 66788999999999332221 2334777776545666688899999988864
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.72 E-value=0.0035 Score=58.54 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhhhchhhhHhHHHHHHH-hhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 74 NLRKCSAAALDVLANVFREELLPVLLPILKE-TLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 74 ~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~-~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
.+|-.|+..|+.+ . ..+.+++++.. ...+++|.+|+.+..+++.++.... ...+++.+..-++|+++
T Consensus 86 eVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~------pe~~l~~~~~W~~d~n~ 153 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE------YKKALPIIDEWLKSSNL 153 (240)
T ss_dssp HHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC------TTTTHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC------HHHHHHHHHHHhcCCCH
Confidence 4666666655554 1 12455666655 4456666666666666666554111 11234444455555555
Q ss_pred HHHHHHHHH
Q psy9904 153 LVRAITCWT 161 (592)
Q Consensus 153 ~VR~~a~~a 161 (592)
.||.+|...
T Consensus 154 ~VRR~Ase~ 162 (240)
T 3l9t_A 154 HTRRAATEG 162 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 103
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.71 E-value=0.034 Score=51.57 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=81.3
Q ss_pred ccccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchh-hhHhhHHHHHHHhc
Q psy9904 69 SLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV-PHLNELVPFLITCL 147 (592)
Q Consensus 69 ~~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~-~~l~~lvp~l~~~L 147 (592)
..-.|.+|++...+.. . ++ .+..+...+.+.+..+|..++.+|+.+....++.++ ..+..++|.+++.+
T Consensus 15 ~L~sWkiK~a~ela~~-----~-e~----~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll 84 (265)
T 3b2a_A 15 LVLSWQILDAVSLALE-----D-KR----ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84 (265)
T ss_dssp HHHTTCHHHHHHHHHH-----C-HH----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHh-----c-hh----HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3457999977654332 1 22 344555666899999999999999999998765454 56899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccc
Q psy9904 148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l 189 (592)
++++-+|--.|..||+.+-+..+- ..+-|..++..+.+-+
T Consensus 85 k~~dEkval~A~r~L~~LLe~vpL--~~~~y~Kl~~aL~dli 124 (265)
T 3b2a_A 85 SQENEKVTIKALRALGYLVKDVPM--GSKTFLKAAKTLVSLL 124 (265)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHh
Confidence 999999999999999999876542 3445566666655544
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.56 E-value=1.1 Score=48.12 Aligned_cols=314 Identities=12% Similarity=0.101 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhchh------------chhhh-----
Q psy9904 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFH--HDWEIKESGILALGAIAEGCMN------------GMVPH----- 135 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s--~~~~~R~aa~~aLg~iaeg~~~------------~i~~~----- 135 (592)
=|++|..+|-.+++.++..|-..-++.+...++. .|...-++++..|-.+...-.+ .+.-+
T Consensus 38 DRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f 117 (651)
T 3grl_A 38 DRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF 117 (651)
T ss_dssp HHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence 4999999999999999877666656655555543 3555566677777554432111 11111
Q ss_pred --HhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhH
Q psy9904 136 --LNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKAL 213 (592)
Q Consensus 136 --l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~ 213 (592)
-++-++.|+.+|+..+..||..+...|..++..-.+ .+-+.++.+ +.=+|.|..+|+|....
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~--------~~Q~~Il~~--------p~gi~~Lv~lL~d~rE~ 181 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP--------QVQQIILVS--------PMGVSRLMDLLADSREV 181 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH--------HHHHHHHHS--------TTHHHHHHGGGGCSSHH
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHhC--------cccHHHHHHHHhCchHH
Confidence 145789999999999999999999999999976332 122333332 45578888889888888
Q ss_pred HHHHHHhhhhhhhhhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccc
Q psy9904 214 VRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL 293 (592)
Q Consensus 214 vr~~a~~~L~~~a~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~ 293 (592)
+|..+...|..+++ ...++..+. -++..++.|+..+..-.. .+.-
T Consensus 182 iRneallLL~~Lt~----------------~n~~iQklV------------------AFEnaFe~Lf~Ii~~Eg~-~~Gg 226 (651)
T 3grl_A 182 IRNDGVLLLQALTR----------------SNGAIQKIV------------------AFENAFERLLDIITEEGN-SDGG 226 (651)
T ss_dssp HHHHHHHHHHHHHT----------------TCHHHHHHH------------------HHTTHHHHHHHHHHHHTG-GGSH
T ss_pred HHHHHHHHHHHHhc----------------CCHHHHHHH------------------HHhccHHHHHHHHHhcCC-Cccc
Confidence 88887666665532 111111110 122334455544321000 0011
Q ss_pred hHHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhH--HHHHHHHHHHHHhhhhh--
Q psy9904 294 FPLLECLSSVATALQAG--FLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDF--MIVALDLLSGLAEGLDM-- 367 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~--f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~--~~~ald~l~~l~~~lg~-- 367 (592)
..+-+|+..+..-+... -..|+... .+++.+.+.+. .+++...=.+... ...+++++..++..-+.
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt--~~i~~L~~LL~------~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEG--SYIQRMKPWFE------VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT--TCGGGGGGGGC------CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHc--CCHHHHHHHhC------CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22345554444433221 00000000 00111111110 0000000000111 13466666666554221
Q ss_pred ---hhHhhhccCchHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHchh---hhhhh-------hhhHHHHHHhccCC-CC
Q psy9904 368 ---HIDSLVSNSNIMHLLYQCMQDP--MPEVRQSSFALLGDLTKACFS---HVHPC-------ISDFMPILGQNLNP-DL 431 (592)
Q Consensus 368 ---~~~~~~~~~~l~~~l~~~l~~~--~~~vR~~a~~~l~~la~~~~~---~~~~~-------l~~llp~l~~~l~~-~~ 431 (592)
.-+.-+.+..+++.++..+..+ ...+|..|+.+++++++..+. .|... .+.++..++..+++ ..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 1111111245666666666544 578999999999999875542 23221 13455555554543 35
Q ss_pred hhHHHHHHHHHHHHHH
Q psy9904 432 ISVCNNATWAIGEISV 447 (592)
Q Consensus 432 ~~v~~~A~~~Lg~ia~ 447 (592)
..+|-.|++++..+..
T Consensus 379 ~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7889999999887753
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.30 E-value=0.11 Score=55.71 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=131.0
Q ss_pred hhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHH
Q psy9904 273 SLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI 352 (592)
Q Consensus 273 ~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 352 (592)
..-++.|..+++.-.- -.+++.++..|.++++.+. ..|-...++.+...|+. +.+|.+...
T Consensus 20 ~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~y~-------~~Vg~~~l~~li~~L~~-----------d~~D~e~v~ 80 (651)
T 3grl_A 20 AETIQKLCDRVASSTL-LDDRRNAVRALKSLSKKYR-------LEVGIQAMEHLIHVLQT-----------DRSDSEIIG 80 (651)
T ss_dssp HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTTTT-------THHHHHTHHHHHHHHHS-----------CTTCHHHHH
T ss_pred hhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhH-------HHhhhhhHHHHHHHHhc-----------ccccHHHHH
Confidence 3445555555432110 1124467777766654333 23333445555555542 123566666
Q ss_pred HHHHHHHHHHhhh----------------hhhhH-hhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhh
Q psy9904 353 VALDLLSGLAEGL----------------DMHID-SLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPC 415 (592)
Q Consensus 353 ~ald~l~~l~~~l----------------g~~~~-~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~ 415 (592)
.+++++..+...- |..|. -+++.++-++.++.+++..+..+|-.++.+|..++.+-++....+
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777776654322 11222 233445678899999999999999999999999999988866655
Q ss_pred h---hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH--HHHHHHHHHHHcCCCC--CchHHHHHHHHHHHh
Q psy9904 416 I---SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV--PMVINQLIIIINRPNT--PKTLLENTAITIGRL 488 (592)
Q Consensus 416 l---~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~--~~il~~L~~~l~~~~~--~~~v~~na~~~lgrl 488 (592)
+ |.-+|.|+..|++....+|+.|+..|.+++... .+++..+ +..++.|+.++..+.. -..+.+-+...+..+
T Consensus 161 Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n-~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN-GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 4 368899999999999999999999999998643 3444433 3678889998876431 123556677778888
Q ss_pred hhhCC
Q psy9904 489 GYVCP 493 (592)
Q Consensus 489 ~~~~~ 493 (592)
...++
T Consensus 240 Lr~N~ 244 (651)
T 3grl_A 240 LKNNN 244 (651)
T ss_dssp HTTCH
T ss_pred HhcCH
Confidence 77665
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.25 E-value=0.04 Score=52.02 Aligned_cols=141 Identities=11% Similarity=-0.026 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHHHHHHhcc
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNL 427 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~llp~l~~~l 427 (592)
+.+..+...+..++..-...-.... ....+|.++..|+..+.++++.|..+|..|+....+.-.... ...+|.|++.|
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL 103 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVL 103 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHH
Confidence 5555666777777654322222222 245679999999999999999999999999874332111111 34788888888
Q ss_pred C-CCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHc-----CC---------CCCchHHHHHHHHHHHhhhh
Q psy9904 428 N-PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIIN-----RP---------NTPKTLLENTAITIGRLGYV 491 (592)
Q Consensus 428 ~-~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~-----~~---------~~~~~v~~na~~~lgrl~~~ 491 (592)
. ..+.+++.+|+.+|..++..-... ...+...++.|+.++. .. .....+++||+.||..+...
T Consensus 104 ~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 104 KQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC
Confidence 6 467889999998888887432211 1234455666666442 11 11357899999999988754
No 107
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.78 E-value=0.14 Score=46.48 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCC---CChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy9904 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNP---DLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII 466 (592)
Q Consensus 390 ~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~---~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~ 466 (592)
+...-...+.+...+..+-.=.+.||+.+++|.++.++-. ....+|.-|...++.|+...+......-+.++..+.+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 3444444555555555554557889999999999988621 1227999999999999999887655566778888899
Q ss_pred HHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 467 IINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 467 ~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
.+.++..+....-.|...+..+|.
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHcCCCCChHHHHHHHHHHHHhHH
Confidence 988877667778888888888885
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.72 E-value=0.027 Score=62.54 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=92.0
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh-hhHH-HHHHhccCCCChhHHHHHHHHHHHHHHhcCchhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFM-PILGQNLNPDLISVCNNATWAIGEISVKLGEDMR 454 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l-~~ll-p~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~ 454 (592)
.++|++ +.|++++++.|..|+.+|+.|+.. ...-.-.+ ..++ +.+...+.|++.+||..|+|+|+.++...|.++.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 466655 458889999999999999999853 22111122 2355 4556678999999999999999999988775544
Q ss_pred hhH--HHHHHHHHHHHcC-------CCC-----C-------chHHHHHHHHHHHhhhhCCCchH---------hHhhhcc
Q psy9904 455 RYV--PMVINQLIIIINR-------PNT-----P-------KTLLENTAITIGRLGYVCPHDVA---------PLCSSLR 504 (592)
Q Consensus 455 p~~--~~il~~L~~~l~~-------~~~-----~-------~~v~~na~~~lgrl~~~~~~~~~---------p~~~~L~ 504 (592)
.++ ..+++.|...++. -.. . ..+.+|++.++.-++....+.+. +++..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 332 1355555544431 110 0 13456788888777765543221 1334432
Q ss_pred cCCC-c-hHhHHHHHHHHHHHhhCch
Q psy9904 505 NIRD-N-EEKDSAFRGMCAMITVNPG 528 (592)
Q Consensus 505 ~~~d-~-~Ek~~a~~~l~~li~~~p~ 528 (592)
.... . +-...|..+|..+..-|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 2111 1 2256678888877776664
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.52 E-value=0.0034 Score=59.88 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q psy9904 143 LITCLSDKKALVRAITCWTLS 163 (592)
Q Consensus 143 l~~~L~D~~~~VR~~a~~aL~ 163 (592)
+..+++|++|.||.++...++
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC
T ss_pred HHHHHcCCCHHHHHHHHHcCC
Confidence 344455555555555555554
No 110
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.41 E-value=1 Score=44.12 Aligned_cols=203 Identities=13% Similarity=0.177 Sum_probs=125.7
Q ss_pred HHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh----C---CCChHHHHHHHHHHHHHHHHchhhhhhhh----hhHHHH
Q psy9904 354 ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM----Q---DPMPEVRQSSFALLGDLTKACFSHVHPCI----SDFMPI 422 (592)
Q Consensus 354 ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l----~---~~~~~vR~~a~~~l~~la~~~~~~~~~~l----~~llp~ 422 (592)
.+.++++++..+|..+.|++ +.+++.+.+|- + ...|+.|..-|.+|..+..+|...+...= ..++..
T Consensus 94 VL~l~~tii~kl~~~i~~~v--p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvids 171 (321)
T 1w9c_A 94 VLSTMAIIVNKLGGHITAEI--PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDS 171 (321)
T ss_dssp HHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 58899999999999999998 78888877763 2 35799999999999999999987765433 345555
Q ss_pred HHhccCCCChhHHHHHHHHHHHHHHhcC--ch-----hhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh-h-CC
Q psy9904 423 LGQNLNPDLISVCNNATWAIGEISVKLG--ED-----MRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY-V-CP 493 (592)
Q Consensus 423 l~~~l~~~~~~v~~~A~~~Lg~ia~~~~--~~-----~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~-~-~~ 493 (592)
++-+.+.+..+|...++..+-++..+.. ++ ++.|+-.++..+..++.++.-....+..+ ..+.+|.. . .+
T Consensus 172 iiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~-~iL~~lf~~ve~~ 250 (321)
T 1w9c_A 172 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHA-SILAYMFNLVEEG 250 (321)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHH-HHHHHHHHHHHcC
Confidence 5566788999999999888888776653 22 34567778888888887765444555443 33444331 1 11
Q ss_pred CchHh-HhhhcccCCCchHhHHHHHHHHHHHhh-CchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHh
Q psy9904 494 HDVAP-LCSSLRNIRDNEEKDSAFRGMCAMITV-NPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRT 564 (592)
Q Consensus 494 ~~~~p-~~~~L~~~~d~~Ek~~a~~~l~~li~~-~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~ 564 (592)
....| |=.. +. ++ +.-...-+..+... =|.--...+..|+..+-++.....+.+..++..|-+.|+
T Consensus 251 ~i~~pl~~~~-~~--~n--~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqiKE 318 (321)
T 1w9c_A 251 KISTSLNPGN-PV--NN--QIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp CCCSCSCSSS-CC--CH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCC-Cc--cc--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 11112 1000 11 12 23333445554432 232222234445555544444445566667776666664
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.92 E-value=0.62 Score=42.22 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCC---ChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHH
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDP---MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILG 424 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~---~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~ 424 (592)
-......+.++.++...-.-.+.||+ .+++|.++.|+-.. ...+|+.|..+++.+++.++......-+.++..+.
T Consensus 60 l~~L~~lm~~~~ALl~N~~l~lepYl--H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKNKHVFIDPYL--HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCGGGH--HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 33444556666666655444688999 68999999997332 23799999999999999998776666678888888
Q ss_pred hccCCCC--hhHHHHHHHHHHHHH
Q psy9904 425 QNLNPDL--ISVCNNATWAIGEIS 446 (592)
Q Consensus 425 ~~l~~~~--~~v~~~A~~~Lg~ia 446 (592)
+.+.|+. ....=.|+++|..+.
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCChHHHHHHHHHHHHhH
Confidence 8887654 445557888877664
No 112
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.81 E-value=2.8 Score=41.07 Aligned_cols=128 Identities=9% Similarity=0.088 Sum_probs=82.9
Q ss_pred HhhhhHHHHHH-HhhcccCCccc--hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCh
Q psy9904 272 ISLLMPPLIQK-WNILKDEDKDL--FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDK 348 (592)
Q Consensus 272 ~~~lmp~L~~~-~~~~~d~~~~~--~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~ 348 (592)
...++|+|++. +..-..+.++. ..++.+++.++..+|..+.|+.+.+++.++..-...+.. | . ++-+
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~------d--f--~eyP 136 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK------D--F--EEYP 136 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSS------T--T--TCSH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc------c--c--ccCh
Confidence 45566776653 21111122222 468999999999999999999998877665433322211 1 1 2236
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhhhc--cCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 349 DFMIVALDLLSGLAEGLDMHIDSLVS--NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 349 ~~~~~ald~l~~l~~~lg~~~~~~~~--~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
+.|..-..++..+....=..+..+-. -..++..++..+++...+|-..++.++-++.+.+.
T Consensus 137 ehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 137 EHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 78888888888887643222222110 02467778888999999999999999888877664
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=93.78 E-value=0.057 Score=61.99 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhhh-chhhhHhHHHHHHHhh-c-----------CCChhHHHHHHHHHHHHHhhchhch--hhhHh
Q psy9904 73 WNLRKCSAAALDVLANVF-REELLPVLLPILKETL-F-----------HHDWEIKESGILALGAIAEGCMNGM--VPHLN 137 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~-~~~vl~~ll~~l~~~l-~-----------s~~~~~R~aa~~aLg~iaeg~~~~i--~~~l~ 137 (592)
-.||..|+.+|..|-... +......++..+.+.+ + +.+-..|++|+++||++....+-.+ -+++|
T Consensus 858 ~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P 937 (997)
T 1vsy_5 858 VEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIP 937 (997)
T ss_dssp HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccH
Confidence 449999999999998776 4233334444443333 2 1112689999999999999988655 57899
Q ss_pred hHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Q psy9904 138 ELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 138 ~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~ 169 (592)
+++..|.....||.| |+.++-.||+.|=...
T Consensus 938 ~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 938 KNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp HHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 999999999999876 9999999999987654
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.59 E-value=1.5 Score=50.95 Aligned_cols=87 Identities=20% Similarity=0.154 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHHHHHhhh-------chhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHH
Q psy9904 71 SDWNLRKCSAAALDVLANVF-------REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFL 143 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~-------~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l 143 (592)
.+..+|+++..+++.|+..+ +.++++.+...+.+.+.+.+...+..++.|||.+.- +..++.|
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 45779999999999998754 235678888888888888888888999999999764 2344455
Q ss_pred HHhcc-------CChHHHHHHHHHHHHHHHH
Q psy9904 144 ITCLS-------DKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 144 ~~~L~-------D~~~~VR~~a~~aL~~l~~ 167 (592)
.+++. +...+||.+|+|||.+++.
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 55543 2246899999999999874
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.51 E-value=0.056 Score=51.41 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCC
Q psy9904 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150 (592)
Q Consensus 71 ~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~ 150 (592)
.+|.||.+++.. ++.. .+..+++|++|.+|.+++..+ +. +.+..+++|+
T Consensus 134 ~d~~VR~~aA~~-------l~~~-------~l~~l~~D~d~~VR~~aa~~l-------~~----------~ll~~ll~D~ 182 (244)
T 1lrv_A 134 RDYLVRAYVVQR-------IPPG-------RLFRFMRDEDRQVRKLVAKRL-------PE----------ESLGLMTQDP 182 (244)
T ss_dssp SSHHHHHHHHHH-------SCGG-------GGGGTTTCSCHHHHHHHHHHS-------CG----------GGGGGSTTCS
T ss_pred CCHHHHHHHHHh-------cCHH-------HHHHHHcCCCHHHHHHHHHcC-------CH----------HHHHHHHcCC
Confidence 358899888873 2322 334567899999999988752 11 3344678999
Q ss_pred hHHHHHHHHHHHHH--HHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhh
Q psy9904 151 KALVRAITCWTLSR--YSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLS 223 (592)
Q Consensus 151 ~~~VR~~a~~aL~~--l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~ 223 (592)
+|.||.++...+.. +...+.... ..+=..+... ++ .+.+..+ +|++..||..+...|+
T Consensus 183 d~~VR~aaa~~l~~~~L~~Ll~D~d-----~~VR~~aa~~-------l~--~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 183 EPEVRRIVASRLRGDDLLELLHDPD-----WTVRLAAVEH-------AS--LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SHHHHHHHHHHCCGGGGGGGGGCSS-----HHHHHHHHHH-------SC--HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CHHHHHHHHHhCCHHHHHHHHcCCC-----HHHHHHHHHc-------CC--HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999999877765 222222110 1111111111 12 3566666 8888889888765553
No 116
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=92.12 E-value=18 Score=40.39 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=70.3
Q ss_pred hhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC---ChHHHHHHHHHHHHHHHHHhh
Q psy9904 94 LLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD---KKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 94 vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D---~~~~VR~~a~~aL~~l~~~~~ 170 (592)
++..++|.+...+.|.+..+...+..+|..+|--.+..-.-.+|.++..+...|.. .++.--.+++.+|..++..+.
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999999866511113467777777777766 455555677889999998876
Q ss_pred cC-CCccchHHHHHHHHccc
Q psy9904 171 SQ-PHDSYLKPLMTEMLGCM 189 (592)
Q Consensus 171 ~~-~~~~~l~~ll~~Ll~~l 189 (592)
.. ....++.++|..++..+
T Consensus 416 ~~~~yr~hl~~lL~l~LpgI 435 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKL 435 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTC
T ss_pred cCcccHHHHHHHHHHHhccC
Confidence 52 13456777777666665
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.74 E-value=9.2 Score=39.42 Aligned_cols=49 Identities=27% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy9904 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAE 126 (592)
Q Consensus 75 ~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iae 126 (592)
+|+.|.+.|-.++.. +.++-+...|.|+++..+...+.+.=.+|-.+..
T Consensus 81 IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 81 IRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 566666666555544 3455555556666666665555555555555444
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.62 E-value=2.3 Score=49.38 Aligned_cols=171 Identities=10% Similarity=0.110 Sum_probs=105.2
Q ss_pred chHHHHHHHhCC----CChHHHHHHHHHHHHHHHHchhh----hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHh
Q psy9904 377 NIMHLLYQCMQD----PMPEVRQSSFALLGDLTKACFSH----VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVK 448 (592)
Q Consensus 377 ~l~~~l~~~l~~----~~~~vR~~a~~~l~~la~~~~~~----~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~ 448 (592)
+.+..+...++. .++.+|++++-.+|.++...-.. -..+++.+...+.+.++..+..-+..++.+||.+...
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 355555555554 35789999999999988643211 1234556666666666666667778899999988631
Q ss_pred cCchhhhhHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHhhhhCCCchHh-HhhhcccCCCchH-hHHHHHHHHH
Q psy9904 449 LGEDMRRYVPMVINQLIIIINR-----PNTPKTLLENTAITIGRLGYVCPHDVAP-LCSSLRNIRDNEE-KDSAFRGMCA 521 (592)
Q Consensus 449 ~~~~~~p~~~~il~~L~~~l~~-----~~~~~~v~~na~~~lgrl~~~~~~~~~p-~~~~L~~~~d~~E-k~~a~~~l~~ 521 (592)
..++.|.+.+.. .+.+..++-.|++++.++....|..+.+ +++...+.....| |..|+..|
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L-- 538 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVF-- 538 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH--
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHH--
Confidence 234444444431 2223567788999999999777776766 5555555555555 65666554
Q ss_pred HHhhCchh-hhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhc
Q psy9904 522 MITVNPGG-VVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQ 565 (592)
Q Consensus 522 li~~~p~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~ 565 (592)
+..+|.. ++.. +...+ +.+++.++..-+...|+.+.+.
T Consensus 539 -m~t~P~~~~l~~---ia~~l--~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 539 -FESKPSVALVSM---VAVRL--RREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp -HHTCCCHHHHHH---HHHHH--TTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HHHCcCHHHHHH---HHHHH--hhCchHHHHHHHHHHHHHHHhc
Confidence 3556743 3222 22222 2345666777777777777654
No 119
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.26 E-value=2.5 Score=36.08 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=57.0
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccCChHHHHHHHHHHHHHHHHHhhc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
...+..|...+++.++.+..-|+..|..++..|+..+...+ ..++..+...++.+++.||......+..-++.+..
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35667788888999999999999999999999986544322 33444455555567889999988888887777754
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=88.90 E-value=33 Score=38.21 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHhhhc---hhhhHhHHHHHHHhhcC---CChhHHHHHHHHHHHHHhhch--hchhhhHhhHHHHHH
Q psy9904 73 WNLRKCSAAALDVLANVFR---EELLPVLLPILKETLFH---HDWEIKESGILALGAIAEGCM--NGMVPHLNELVPFLI 144 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~---~~vl~~ll~~l~~~l~s---~~~~~R~aa~~aLg~iaeg~~--~~i~~~l~~lvp~l~ 144 (592)
-+++..+..+|..||...| +-++|.++..+...+.+ .+...--+|+.+|..++.-.. +....|+..++..++
T Consensus 353 ~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~L 432 (799)
T 1vsy_4 353 PDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLV 432 (799)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHh
Confidence 3466778899999999777 89999999999888877 456666677888888776544 345689999999999
Q ss_pred HhccCChHHHHHHHHHHHHHHHHHhh
Q psy9904 145 TCLSDKKALVRAITCWTLSRYSHWVV 170 (592)
Q Consensus 145 ~~L~D~~~~VR~~a~~aL~~l~~~~~ 170 (592)
.++.-.++.--..++..+..++..++
T Consensus 433 pgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 433 SKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 99987788887888999999988764
No 121
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.83 E-value=3.7 Score=36.02 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=54.9
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHhhc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSD-KKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D-~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
...+..|...+++.++.+...|+..|..++..|+..+...+ ..++..++..++. .++.||..+...+..-++.+..
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566778888999999999999999999999987554322 2244444444443 5689999988877777766654
No 122
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=87.06 E-value=2.5 Score=39.19 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=59.1
Q ss_pred cccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccC
Q psy9904 70 LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD 149 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D 149 (592)
..+|.+--+.+.+++.+....++ .+.+.+.++++|++..+|.+|+.++ +.- . -..+...+++.+...+.|
T Consensus 101 ~~nWd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~~s~~~w~rR~ai~~~--l~~--~--~~~~~~~~~~i~~~~~~d 170 (220)
T 2b6c_A 101 KAWWDSVDAWRKFFGSWVALHLT----ELPTIFALFYGAENFWNRRVALNLQ--LML--K--EKTNQDLLKKAIIYDRTT 170 (220)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHTTCSSHHHHHHHHHTT--TTC--G--GGCCHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHcCCCHHHHHHHHHHH--HHH--H--HCCCHHHHHHHHHHhCCC
Confidence 55677644443333333332222 2567788888999877777776643 211 1 124667788888889999
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy9904 150 KKALVRAITCWTLSRYSH 167 (592)
Q Consensus 150 ~~~~VR~~a~~aL~~l~~ 167 (592)
++..||.+..|+|..++.
T Consensus 171 ~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 171 EEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp CCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999999999999999874
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.73 E-value=6.1 Score=34.02 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=59.9
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCC------CChhHHHHHHHHHHHHHHh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNP------DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~------~~~~v~~~A~~~Lg~ia~~ 448 (592)
..+..|.+.++++++.+...|+.+|..|.+.||..|..-+ ..|+..|.+.+.+ ....|+.-++..+...+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999999886544 2466666666653 3578999888888888877
Q ss_pred cCc
Q psy9904 449 LGE 451 (592)
Q Consensus 449 ~~~ 451 (592)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 754
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.61 E-value=4.2 Score=34.65 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=56.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..+..|.+.+++.++.+...|+.+|..|++.||..|..-+ ..++..+.+.++..++.|++-+...+...+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4678888999999999999999999999999999876433 23444444444345678998888888777766653
No 125
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.31 E-value=7.6 Score=33.36 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=61.4
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCC------CChhHHHHHHHHHHHHHHh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNP------DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~------~~~~v~~~A~~~Lg~ia~~ 448 (592)
..+..|.+.++++++.+...|+.+|..|.++||..|...+ ..++..|.+.+.+ ....|+.-++..+...+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999999999886655 3577777777754 3678999888888888777
Q ss_pred cCc
Q psy9904 449 LGE 451 (592)
Q Consensus 449 ~~~ 451 (592)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
No 126
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.36 E-value=4.5 Score=35.43 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=56.9
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCC-CChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNP-DLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~-~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
..+..|.+.+++.++.+...|+.+|..|.+.||..|...+. .++..+.+.++. .++.|++-++..+...+..++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45778889999999999999999999999999998864432 255544444433 4578999888888877776653
No 127
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.92 E-value=7.2 Score=34.45 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=63.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccCC------CChhHHHHHHHHHHHHHHh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLNP------DLISVCNNATWAIGEISVK 448 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~~------~~~~v~~~A~~~Lg~ia~~ 448 (592)
..+..|.+.+++.++.+...|+.+|..|.++||..|..-+. .++..|.+.+.+ ....|+.-++..+...+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999998875432 456666655542 3578999999888888877
Q ss_pred cCchhhhhHHHHHHHH
Q psy9904 449 LGEDMRRYVPMVINQL 464 (592)
Q Consensus 449 ~~~~~~p~~~~il~~L 464 (592)
++.. |.+......|
T Consensus 130 f~~~--~~i~~~y~~L 143 (171)
T 1juq_A 130 LPEE--AKIKDAYHML 143 (171)
T ss_dssp CTTC--HHHHHHHHHH
T ss_pred cCCC--cHHHHHHHHH
Confidence 7643 4444444433
No 128
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=84.33 E-value=41 Score=34.71 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChH
Q psy9904 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKA 152 (592)
Q Consensus 73 w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~ 152 (592)
-..++-|+.-|.+.-..||+ .-...+..+..++.|.+..+|..|+..|..++.+ .|++.+..+|.++|+..++
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccch
Confidence 45788899999999888874 2334455555667899999999999998888765 4789999999999998888
Q ss_pred HHHHHHHHHHHHHHH
Q psy9904 153 LVRAITCWTLSRYSH 167 (592)
Q Consensus 153 ~VR~~a~~aL~~l~~ 167 (592)
..+.++-++|-.+..
T Consensus 115 ~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 115 AEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888777665
No 129
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=82.58 E-value=5.1 Score=37.51 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=54.1
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHH----HHHHHHhhchhch-hhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGIL----ALGAIAEGCMNGM-VPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~----aLg~iaeg~~~~i-~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
|...+.+.+++.|++.-.|.+|+. .|.. .....+ ..+++.++..+...+.|++..||.+..|+|..++..
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 456777888889998778888877 4444 121211 257888999999999999999999999999998875
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.72 E-value=19 Score=33.26 Aligned_cols=76 Identities=9% Similarity=0.141 Sum_probs=55.1
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhc
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVS 171 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~ 171 (592)
...+..|...+++.++.+...|+..|..++..|+..+...+ ..++..|.+.++ .+++.||..+...+..-++.+..
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677788888999999999999999999999996443222 223333443333 35688999988888888877654
No 131
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.37 E-value=14 Score=31.99 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=55.1
Q ss_pred HhHHHHHHHhhc-CCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHH-HHHhcc---CChHHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLF-HHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPF-LITCLS---DKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 96 ~~ll~~l~~~l~-s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~-l~~~L~---D~~~~VR~~a~~aL~~l~~~ 168 (592)
...+..|...++ +.++.+...|+..|..++..|+..+...+ ..++.- +++.+. +++..||..+...+..-+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 355667777787 48899999999999999999987554433 235554 455553 45678999888888887777
Q ss_pred hhc
Q psy9904 169 VVS 171 (592)
Q Consensus 169 ~~~ 171 (592)
+..
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 654
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.97 E-value=16 Score=31.34 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=57.6
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccC------ChHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSD------KKALVRAITCWTLSRYSH 167 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D------~~~~VR~~a~~aL~~l~~ 167 (592)
...+..|...+++.++.+...|+..|..++..|+..+...+ ..++.-|++.+++ +++.||.-....+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999997553332 3456666777654 468999988888877777
Q ss_pred Hhhc
Q psy9904 168 WVVS 171 (592)
Q Consensus 168 ~~~~ 171 (592)
.+..
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 6643
No 133
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.96 E-value=12 Score=31.68 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHhhh---chhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhcc------C---
Q psy9904 82 ALDVLANVF---REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS------D--- 149 (592)
Q Consensus 82 ~L~~la~~~---~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~------D--- 149 (592)
.+..||+.. +.+.+..++++|...+++.+|.++.=|+..|..++....+.+...+..=.. +++.|. |
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~-~Ik~l~~F~g~~dp~~ 109 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV-AVRNLFHYKGHPDPLK 109 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH-HHHTTTTCCCCCCTTT
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH-HHHHHHhcCCCCCccc
Confidence 455666543 235678999999999999999999999999999885444333322222222 233332 3
Q ss_pred ---ChHHHHHHHHHHHHHHH
Q psy9904 150 ---KKALVRAITCWTLSRYS 166 (592)
Q Consensus 150 ---~~~~VR~~a~~aL~~l~ 166 (592)
+...||..|-.++..+.
T Consensus 110 G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 110 GDALNKAVRETAHETISAIF 129 (140)
T ss_dssp SSCHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHh
Confidence 23789999988887764
No 134
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=78.76 E-value=5.7 Score=37.04 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 98 ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
+++++.+++.|++...|.+|+..+ +.- ........+++.+...+.|++..||.+..|+|..++.
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~----~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKY----KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTC----GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHH----HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 445666777888877777776543 111 1223455678888889999999999999999998874
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.87 E-value=9.2 Score=35.27 Aligned_cols=75 Identities=7% Similarity=-0.009 Sum_probs=56.7
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY 456 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~ 456 (592)
.+.+.+.....+++.-+|+.|+..+ + .. .. ..+.+.+++.+-..+.++.+-|+....|+|.+++...++.+.+|
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~-~~--~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQ--L-ML-KE--KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTT--T-TC-GG--GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--H-HH-HH--CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4678888999999999999887643 2 11 11 24556778888888999999999999999999987765655555
Q ss_pred H
Q psy9904 457 V 457 (592)
Q Consensus 457 ~ 457 (592)
+
T Consensus 198 l 198 (220)
T 2b6c_A 198 M 198 (220)
T ss_dssp H
T ss_pred H
Confidence 5
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.70 E-value=14 Score=31.67 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=57.1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccC------ChHHHHHHHHHHHHHHHHH
Q psy9904 97 VLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSD------KKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 97 ~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D------~~~~VR~~a~~aL~~l~~~ 168 (592)
..+..|...+++.++.+...|+..|..++..|+..+...+ ..++..+++.+.+ .++.||.-.+..+..-+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999997664443 4577777777764 3689999887777776665
Q ss_pred hh
Q psy9904 169 VV 170 (592)
Q Consensus 169 ~~ 170 (592)
+.
T Consensus 118 f~ 119 (148)
T 1mhq_A 118 FP 119 (148)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 137
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.08 E-value=36 Score=34.19 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=76.6
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc------
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKL------ 449 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~------ 449 (592)
+++++-++....+++.++|+....+|++.+..- ..+++.+++.|...+.++++.|...++.+.+.+-...
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888888888999999999999999888642 2346777777777788888888887777666654211
Q ss_pred -Cc------hhhhhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 450 -GE------DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 450 -~~------~~~p~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
+. ..=..+..+-..++.++++. +..++-.++.-+-+++.
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSD--NDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHH
Confidence 11 11123344455566666543 47888888888888775
No 138
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.31 E-value=37 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=55.6
Q ss_pred hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 92 EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 92 ~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
+..+|.+++-+-+...+++..+|+-.+--++.++ .+. ..+.+.+++.|..+|+|+++.|...+..|.+.+..
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k-~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVK-VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3577888887777777888888887776655554 332 25788999999999999999999888888877654
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.20 E-value=21 Score=32.73 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=59.5
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhhcC
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQ 172 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~-D~~~~VR~~a~~aL~~l~~~~~~~ 172 (592)
...+..|...+++.++.+..-|+..|..++..|+..+...+ ..++..+...++ .+++.||..+...+..-+..+...
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 35566777888999999999999999999999986443322 123334444333 456899998887777777666543
Q ss_pred CCccchHHHHHHH
Q psy9904 173 PHDSYLKPLMTEM 185 (592)
Q Consensus 173 ~~~~~l~~ll~~L 185 (592)
..-+++......|
T Consensus 121 ~~~~~i~~~y~~L 133 (220)
T 1dvp_A 121 DKYQAIKDTMTIL 133 (220)
T ss_dssp SSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333444444433
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.81 E-value=23 Score=31.16 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=56.4
Q ss_pred HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHHHHhccC------ChHHHHHHHHHHHHHHHH
Q psy9904 96 PVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--NELVPFLITCLSD------KKALVRAITCWTLSRYSH 167 (592)
Q Consensus 96 ~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l~~~L~D------~~~~VR~~a~~aL~~l~~ 167 (592)
...+..|...+++.++.+...|+..|..++..|+..+...+ ..++.-|+..++. .++.||..++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999997554332 3355556666542 368999998888887777
Q ss_pred Hhh
Q psy9904 168 WVV 170 (592)
Q Consensus 168 ~~~ 170 (592)
.+.
T Consensus 129 ~f~ 131 (171)
T 1juq_A 129 ALP 131 (171)
T ss_dssp HCT
T ss_pred HcC
Confidence 664
No 141
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=73.01 E-value=35 Score=34.22 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=57.8
Q ss_pred hhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 92 EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 92 ~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
+.+++.+++.+-++..+++..+|+..+--|+..+ ... ..+++.+++.|..+|+|.++.|...+..|.+.+..
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~---~~~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEAC---KRD-IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4678888998888888999999998877666554 322 25689999999999999999999888888877653
No 142
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=72.04 E-value=19 Score=33.75 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=50.4
Q ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 379 MHLLYQCMQDP-MPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 379 ~~~l~~~l~~~-~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
+|.+....+.+ .+-+|-++++++|.+.+.-..++..|+ ..++|..++.+.....-.+..|.+.+..|.
T Consensus 103 yPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 103 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 45543333322 357899999999999998777777775 469999999987777667778888777764
No 143
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=71.08 E-value=70 Score=30.08 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=73.9
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhc------
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKL------ 449 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~------ 449 (592)
+++++-++....+++.++|+....++.+.++.-. .+++.+++.|...++++++.|...++.+.+.+-...
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777778899999999999998885422 356778888888888888998888877766654221
Q ss_pred Cch----hhh---hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHhhh
Q psy9904 450 GED----MRR---YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGY 490 (592)
Q Consensus 450 ~~~----~~p---~~~~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~ 490 (592)
... ... .+..+-..++.++++. +..++-.++.-+-++..
T Consensus 128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHH
Confidence 111 111 2333444455555543 47788777777777764
No 144
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=71.06 E-value=35 Score=29.43 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred chHHHHHHHhC-CCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHH-HHhccCC---CChhHHHHHHHHHHHHHHhc
Q psy9904 377 NIMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPI-LGQNLNP---DLISVCNNATWAIGEISVKL 449 (592)
Q Consensus 377 ~l~~~l~~~l~-~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~-l~~~l~~---~~~~v~~~A~~~Lg~ia~~~ 449 (592)
..+..|.+.++ +.++.+...|+.+|..|.++||..|..-+. .++.. +++.+.+ ....|++-++..+...+..+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 45778888997 578999999999999999999998876443 36655 4555532 34578888887777777665
Q ss_pred C
Q psy9904 450 G 450 (592)
Q Consensus 450 ~ 450 (592)
+
T Consensus 133 ~ 133 (157)
T 1elk_A 133 R 133 (157)
T ss_dssp T
T ss_pred C
Confidence 4
No 145
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.47 E-value=1e+02 Score=31.62 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhh-hhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHH--HHHHchhhhhhhhhhHHHHHHhcc-
Q psy9904 352 IVALDLLSGLAEGLDM-HIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD--LTKACFSHVHPCISDFMPILGQNL- 427 (592)
Q Consensus 352 ~~ald~l~~l~~~lg~-~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~--la~~~~~~~~~~l~~llp~l~~~l- 427 (592)
...++-+..+...++. +|.... ..++..+..|+..++..|-+.|+.++.+ +... +..+...++|.++..+
T Consensus 302 vlFL~eleeile~~~~~ef~~i~--~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l----i~~n~~~IlPii~p~L~ 375 (449)
T 2npp_B 302 VMFLNELEEILDVIEPSEFVKIM--EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMFPSLY 375 (449)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH--HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH----HHhchhhhHHhhHHHHH
Confidence 4567777788877764 577766 6789999999999999999999987743 2222 2223344555554443
Q ss_pred ---CCC-ChhHHHHHHHHHHHHH
Q psy9904 428 ---NPD-LISVCNNATWAIGEIS 446 (592)
Q Consensus 428 ---~~~-~~~v~~~A~~~Lg~ia 446 (592)
... +..|++.|..++..+.
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Confidence 333 4568887777776554
No 146
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=64.17 E-value=1.2e+02 Score=30.39 Aligned_cols=94 Identities=11% Similarity=0.165 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhh-hhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHH--HHHHchhhhhhhhhhHHHHHHhccC
Q psy9904 352 IVALDLLSGLAEGLD-MHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD--LTKACFSHVHPCISDFMPILGQNLN 428 (592)
Q Consensus 352 ~~ald~l~~l~~~lg-~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~--la~~~~~~~~~~l~~llp~l~~~l~ 428 (592)
...++-+..+...++ .+|.... ..++..+..|+..++..|-+.|+.++.+ +.....+.-...+|-++|.+.++..
T Consensus 269 vlFL~Ele~iLe~~~~~~f~~i~--~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~ 346 (403)
T 3fga_B 269 VMFLNELEEILDVIEPSEFVKIM--EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 346 (403)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH--HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456777888888776 4577766 6789999999999999999999988743 2222222223334555555655544
Q ss_pred CC-ChhHHHHHHHHHHHHHH
Q psy9904 429 PD-LISVCNNATWAIGEISV 447 (592)
Q Consensus 429 ~~-~~~v~~~A~~~Lg~ia~ 447 (592)
.. +..|++.|..++..+..
T Consensus 347 ~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 347 THWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp CCSCHHHHHHHHHHHHHHHT
T ss_pred HccCHHHHHHHHHHHHHHHH
Confidence 44 56788878777766644
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.67 E-value=62 Score=29.55 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=59.4
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCchh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPILGQNLN-PDLISVCNNATWAIGEISVKLGEDM 453 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~~~ 453 (592)
..+..|.+.+++.++.+...|+.+|..+.+++|..|...+. .++..+.+.++ ..+..|+.-++..+...+..++..-
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 46778889999999999999999999999999987754322 23333333322 3467888888877777776665321
Q ss_pred -hhhHHHHHHHH
Q psy9904 454 -RRYVPMVINQL 464 (592)
Q Consensus 454 -~p~~~~il~~L 464 (592)
.+++...+..|
T Consensus 122 ~~~~i~~~y~~L 133 (220)
T 1dvp_A 122 KYQAIKDTMTIL 133 (220)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 12344444444
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.23 E-value=40 Score=31.03 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=61.4
Q ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhh--hhHHHHHHhccC-CCChhHHHHHHHHHHHHHHhcCchh
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLN-PDLISVCNNATWAIGEISVKLGEDM 453 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l--~~llp~l~~~l~-~~~~~v~~~A~~~Lg~ia~~~~~~~ 453 (592)
..+..|.+.+++.++.+...|+.+|..+++++|..|..-+ ..++..|.+.++ .....|+.-++..+...+..++.+-
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578889999999999999999999999999998775433 234444433332 2457899988888888887765331
Q ss_pred -hhhHHHHHHHHH
Q psy9904 454 -RRYVPMVINQLI 465 (592)
Q Consensus 454 -~p~~~~il~~L~ 465 (592)
.+++..+...|.
T Consensus 125 ~l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 125 KYKVVQDTYQIMK 137 (226)
T ss_dssp GGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 134444444443
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=55.65 E-value=32 Score=29.05 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.9
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHH
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMP 421 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp 421 (592)
..+|..|.+.|++.++.++--|+.+|.-|++.-.+.|...+..=..
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 4689999999999999999999999999998777777665554333
No 150
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=55.07 E-value=21 Score=33.07 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=54.8
Q ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhH
Q psy9904 378 IMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457 (592)
Q Consensus 378 l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~ 457 (592)
+.+.+.....+++.-+|+.|+..+ +... ...-...+++.+...+.++.+-|+....|+|.+++...++.+.+|+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 567778888888999999887654 2211 1122345667777888899999999999999999877666666665
Q ss_pred H
Q psy9904 458 P 458 (592)
Q Consensus 458 ~ 458 (592)
.
T Consensus 206 ~ 206 (232)
T 3jxy_A 206 Q 206 (232)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=49.31 E-value=1.6e+02 Score=28.86 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=56.6
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHH--Hchhhhhhhhh--hHHHHHHhccCCCChhHHHHHHHHHHHHH
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTK--ACFSHVHPCIS--DFMPILGQNLNPDLISVCNNATWAIGEIS 446 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~--~~~~~~~~~l~--~llp~l~~~l~~~~~~v~~~A~~~Lg~ia 446 (592)
+.++.....+++..++-.|+.++.+||++.- +...-...|+. .-+..++..|++....++-.|.-.....+
T Consensus 208 d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 208 DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 3577788889999999999999999999974 35555666764 57888999999999888888877766544
No 152
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=47.90 E-value=1.3e+02 Score=25.63 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=60.6
Q ss_pred chHHHHHHHhCC-CChHHHHHHHHHHHHHHHHchhhhhhhhh--hHHHH-HHhccCCC---ChhHHHHHHHHHHHHHHhc
Q psy9904 377 NIMHLLYQCMQD-PMPEVRQSSFALLGDLTKACFSHVHPCIS--DFMPI-LGQNLNPD---LISVCNNATWAIGEISVKL 449 (592)
Q Consensus 377 ~l~~~l~~~l~~-~~~~vR~~a~~~l~~la~~~~~~~~~~l~--~llp~-l~~~l~~~---~~~v~~~A~~~Lg~ia~~~ 449 (592)
..+..|.+.++. +++.+-..|+.+|..|++.||..|...+. .++.- |.+.+.+. ...|++-++..+...+..+
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 457888888874 57777778999999999999998875553 46653 55555432 3468998888888888766
Q ss_pred Cch-hhhhHHHHHHHH
Q psy9904 450 GED-MRRYVPMVINQL 464 (592)
Q Consensus 450 ~~~-~~p~~~~il~~L 464 (592)
+.. =.+++..+...|
T Consensus 133 ~~~p~l~~i~~~Y~~L 148 (152)
T 3rru_A 133 PGGVDVSEVKEVYLDL 148 (152)
T ss_dssp SSSCCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHH
Confidence 532 124555554444
No 153
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=46.35 E-value=59 Score=30.06 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=54.5
Q ss_pred chHHHHHHHhCCCChHHHHHHHH----HHHHHHHHchhh-hhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCc
Q psy9904 377 NIMHLLYQCMQDPMPEVRQSSFA----LLGDLTKACFSH-VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGE 451 (592)
Q Consensus 377 ~l~~~l~~~l~~~~~~vR~~a~~----~l~~la~~~~~~-~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~ 451 (592)
...+.+.....+++.=+|..++. ++.. ..... =..+++.++..+...+.++.+-|+....|+|.+++....+
T Consensus 108 ~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 108 IAQDVADKWIASGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp SHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 34667788888889999999998 5444 22121 1346778888888899999999999999999998876543
No 154
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=39.42 E-value=79 Score=27.02 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=49.1
Q ss_pred hHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhchhchhhhHh--hHHH-HHHHhccCC---hHHHHHHHHHHHHHHHHHh
Q psy9904 97 VLLPILKETLFH-HDWEIKESGILALGAIAEGCMNGMVPHLN--ELVP-FLITCLSDK---KALVRAITCWTLSRYSHWV 169 (592)
Q Consensus 97 ~ll~~l~~~l~s-~~~~~R~aa~~aLg~iaeg~~~~i~~~l~--~lvp-~l~~~L~D~---~~~VR~~a~~aL~~l~~~~ 169 (592)
..+..|...+++ +++.+-.-|+..|..++..|+..+...+. .++. .+++.++++ ...||...+..+..-+..+
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 456666666764 57777777999999999999975543332 3443 355555543 3479988777777666655
Q ss_pred hc
Q psy9904 170 VS 171 (592)
Q Consensus 170 ~~ 171 (592)
..
T Consensus 133 ~~ 134 (152)
T 3rru_A 133 PG 134 (152)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 155
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=38.77 E-value=61 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhh-c--hhhhHhHHHHHHHhhcCCCh
Q psy9904 76 RKCSAAALDVLANVF-R--EELLPVLLPILKETLFHHDW 111 (592)
Q Consensus 76 Rk~aa~~L~~la~~~-~--~~vl~~ll~~l~~~l~s~~~ 111 (592)
|.--...++.|-+.. | ..++..-+.++..+.+=.+.
T Consensus 119 ~e~e~~~~~~~~~~~~g~~seVf~KTLdYl~rFSKfkn~ 157 (221)
T 3hou_D 119 REKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQ 157 (221)
T ss_dssp THHHHHHHHHHHHHHSCSCCHHHHHHHHHHHHSCSCCCH
T ss_pred hHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHhcCCCcH
Confidence 444456677766543 3 36888888888876654443
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=37.78 E-value=37 Score=35.02 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCchhhhhHHH--HHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhC
Q psy9904 431 LISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492 (592)
Q Consensus 431 ~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~--il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~ 492 (592)
++.+-..||.=+|++++..+..- ..+.. .=..++.++.+++ ++|+.+|..|++++..++
T Consensus 418 d~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d--~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSD--SRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSS--HHHHHHHHHHHHHHHHHS
T ss_pred CcceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhc
Confidence 56788899999999999887431 22322 3556778888776 899999999999987653
No 157
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.45 E-value=2.7e+02 Score=23.27 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhh
Q psy9904 294 FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLV 373 (592)
Q Consensus 294 ~~~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~ 373 (592)
.+.+..|+.+|..- ..+++.++ ..+...+... ..+....++=++..|++..|..|..++
T Consensus 24 k~~I~~LT~~a~~~----~~~a~~Iv----~~i~~~i~k~-------------~p~~KL~~LYL~DsIvkN~g~~y~~~F 82 (144)
T 1sz9_A 24 RPIITTLTKLAEEN----ISCAQYFV----DAIESRIEKC-------------MPKQKLYAFYALDSICKNVGSPYTIYF 82 (144)
T ss_dssp HHHHHHHHHHHHHT----GGGHHHHH----HHHHHHHHHS-------------CHHHHHHHHHHHHHHHHHTCTTHHHHH
T ss_pred HhHHHHHHHHHHHH----HHHHHHHH----HHHHHHhccC-------------CHhhHHHHHHHHHHHHHhccchHHHHH
Confidence 34566676666542 23455443 4444444321 133445778889999999998887777
Q ss_pred ccCchHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy9904 374 SNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405 (592)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la 405 (592)
. ..+.+.+.......+..+|.....++.-=-
T Consensus 83 ~-~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 83 S-RNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp H-TTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5 456677766666667888888777765443
No 158
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=26.96 E-value=1.1e+02 Score=31.46 Aligned_cols=58 Identities=7% Similarity=-0.037 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHHHhhchhch--hhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q psy9904 109 HDWEIKESGILALGAIAEGCMNGM--VPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167 (592)
Q Consensus 109 ~~~~~R~aa~~aLg~iaeg~~~~i--~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~ 167 (592)
.++.+---|+.=+|.++...+.+- -..+ ..-..+.+++.++++.||+.|..|++.+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 356666667778888888776432 1222 356778889999999999999999998753
No 159
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.47 E-value=2.6e+02 Score=29.76 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=51.2
Q ss_pred hhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhc--------hhhhHhhHHHHHHH-hccCChHHHHHHHHHHHH
Q psy9904 93 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNG--------MVPHLNELVPFLIT-CLSDKKALVRAITCWTLS 163 (592)
Q Consensus 93 ~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~--------i~~~l~~lvp~l~~-~L~D~~~~VR~~a~~aL~ 163 (592)
.+++.-++++..++++++..+-..|+..+..+..+.... ...|. .+...+.. ....|...+|..|...++
T Consensus 313 ~if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~-~~~q~L~~v~~~~P~~~lR~~a~~vl~ 391 (596)
T 4f52_E 313 YLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFL-TVPQGLVKVMTLCPIETLRKKSLAMLQ 391 (596)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHH-HHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 355666778888899888777788887777766543311 11222 22222322 234688999999999999
Q ss_pred HHHHHhhc
Q psy9904 164 RYSHWVVS 171 (592)
Q Consensus 164 ~l~~~~~~ 171 (592)
.+-..+.+
T Consensus 392 ~~I~~~~~ 399 (596)
T 4f52_E 392 LYINKLDS 399 (596)
T ss_dssp HHHHHBCH
T ss_pred HHHHhCCh
Confidence 98876654
No 160
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=26.27 E-value=2.9e+02 Score=23.13 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhH-hhHHHHHHHhccCChHHHHH
Q psy9904 78 CSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL-NELVPFLITCLSDKKALVRA 156 (592)
Q Consensus 78 ~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l-~~lvp~l~~~L~D~~~~VR~ 156 (592)
.....|-.+|...- ..-..+...+.+.+....+.+|-.+++.+..|+..++......+ +.+.+.+......-++.+|.
T Consensus 25 ~~I~~LT~~a~~~~-~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~ 103 (144)
T 1sz9_A 25 PIITTLTKLAEENI-SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRT 103 (144)
T ss_dssp HHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34445555554322 23456677777777777899999999999999999885444333 33444444444434456665
Q ss_pred HHHHHHH
Q psy9904 157 ITCWTLS 163 (592)
Q Consensus 157 ~a~~aL~ 163 (592)
.....+.
T Consensus 104 k~~rL~~ 110 (144)
T 1sz9_A 104 KLINMFK 110 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 161
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=25.55 E-value=5e+02 Score=25.67 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhcc
Q psy9904 296 LLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSN 375 (592)
Q Consensus 296 ~~e~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~ 375 (592)
++.+|.++-.++...-..+.......-+..|...|...... ... .....|.+....++.|+..+...- ..+...+..
T Consensus 84 l~~~L~sL~v~Lrt~~~sWV~~F~~~Gl~~Ll~iL~~~~~~-~~~-~~~~~d~~~q~~~l~CLkalmN~~-~G~~~vl~~ 160 (383)
T 3eg5_B 84 LLSCLESLRVSLTSHPVSWVQTFGAEGLASLLDILKRLHDE-KEE-TSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLET 160 (383)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTC-C--------CHHHHHHHHHHHHHHTSSH-HHHHHHHTC
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHccHHHHHHHHHHHhhc-ccc-ccchhhHHHHHHHHHHHHHHhcch-hhHHHHHcC
Confidence 45667777666666444444333222233444444321100 000 001223445556777777775432 234444555
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
+..+..+..++..+.+.+|..++.+|+.+|..-+
T Consensus 161 ~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 161 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 7789999999999999999999999999987653
No 162
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=24.53 E-value=85 Score=26.55 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred hHHHHHHHhhccCC---C-chhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q psy9904 533 EFIFFCDAVASWST---P-KEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRD 584 (592)
Q Consensus 533 ~~~~~~~~i~~~~~---~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 584 (592)
+.-.|+.-|+.... . +.+.......++.-++..++++.|+.+.++||++.+.
T Consensus 85 ~~~eFl~rV~~~~~~~~~~~~~a~~~v~aV~~~L~~~v~~ge~~~v~~~LP~~~~~ 140 (145)
T 2ysk_A 85 HKEAFLAHVAEELKTPSGPAVDPEAATRAVFKVLSREISQGELEDVLGLLPKELRA 140 (145)
T ss_dssp SHHHHHHHHHHTSEETTEESSCHHHHHHHHHHHHHHHSCHHHHHHHHHTSCHHHHT
T ss_pred CHHHHHHHHHHHcCcCCCCcccHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Confidence 34567777776543 2 3456677888999999999988999999999999875
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.37 E-value=4.4e+02 Score=24.63 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=56.5
Q ss_pred HHHHHHHH-HHHHHhhhc-------hhhhHhHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhchhchhhhH--hhHHHHH
Q psy9904 75 LRKCSAAA-LDVLANVFR-------EELLPVLLPILKETLFHH-DWEIKESGILALGAIAEGCMNGMVPHL--NELVPFL 143 (592)
Q Consensus 75 ~Rk~aa~~-L~~la~~~~-------~~vl~~ll~~l~~~l~s~-~~~~R~aa~~aLg~iaeg~~~~i~~~l--~~lvp~l 143 (592)
-|-|.+.+ |..+|.... .++--.+.|++....++. --..|-+++-.+|+++..-...+-.++ .+++|..
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 35555544 466665432 123345778876544432 246799999999999876554444454 5688888
Q ss_pred HHhccCChHHHHHHHHHHHHHHH
Q psy9904 144 ITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 144 ~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
++.+.--+...+..|..-+.++-
T Consensus 151 Lrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHh
Confidence 88777666666666665555543
No 164
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.68 E-value=2e+02 Score=22.33 Aligned_cols=68 Identities=15% Similarity=0.276 Sum_probs=42.7
Q ss_pred cccCCCchHhHHHHHH---HHHH-HhhCchhhhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcC
Q psy9904 503 LRNIRDNEEKDSAFRG---MCAM-ITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQF 578 (592)
Q Consensus 503 L~~~~d~~Ek~~a~~~---l~~l-i~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l 578 (592)
++...|.+++..-|.. ++.. +..++ +...+.+|..++.-|..| .++|+-|++.+|..-|+-++.-+
T Consensus 7 ~p~~~d~e~~e~~Fl~eV~lGE~L~~~g~--~e~av~Hf~nAl~Vc~qP--------~~LL~i~q~TlP~~Vf~~Li~~l 76 (95)
T 1om2_A 7 LPDLKDAEAVQKFFLEEIQLGEELLAQGD--YEKGVDHLTNAIAVCGQP--------QQLLQVLQQTLPPPVFQMLLTKL 76 (95)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHSCH--------HHHHHHHHHHSCCHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHcCCH--------HHHHHHHHhhCCHHHHHHHHHHH
Confidence 3445666666654432 2322 22232 444566777888777665 56788888888887888888877
Q ss_pred CH
Q psy9904 579 PD 580 (592)
Q Consensus 579 ~~ 580 (592)
|.
T Consensus 77 ~~ 78 (95)
T 1om2_A 77 PT 78 (95)
T ss_dssp CS
T ss_pred HH
Confidence 73
No 165
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=22.40 E-value=5.7e+02 Score=25.24 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHch
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~ 409 (592)
.+....++.||..+... ..++...+..+..+..+..++..+++.+|..++.+|+.+|..-+
T Consensus 72 ~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~ 132 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 132 (386)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCC
Confidence 34444566777766532 12233344446778999999988899999999999999886543
No 166
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.68 E-value=5.6e+02 Score=24.89 Aligned_cols=101 Identities=10% Similarity=0.152 Sum_probs=69.5
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhh----hHHHHHHhccCCCChhHHHHHHHHHHHHHHhc--Cch
Q psy9904 379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCIS----DFMPILGQNLNPDLISVCNNATWAIGEISVKL--GED 452 (592)
Q Consensus 379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~----~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~--~~~ 452 (592)
+-.+....+.++-+|-..|+.++.++....+...+.|+. .+....-+.+..++|-+|.-++..||++...- ..-
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~v 245 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTI 245 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHH
Confidence 334556778889999999999999998776665555554 56777777788899999999999999986431 122
Q ss_pred hhhhHH--HHHHHHHHHHcCCCCCchHHHHH
Q psy9904 453 MRRYVP--MVINQLIIIINRPNTPKTLLENT 481 (592)
Q Consensus 453 ~~p~~~--~il~~L~~~l~~~~~~~~v~~na 481 (592)
|..|+. .-+..++.+|+++. +++.-.|
T Consensus 246 M~~Yis~~~nLkl~M~LL~d~s--k~Iq~EA 274 (341)
T 1upk_A 246 MTKYISKPENLKLMMNLLRDKS--RNIQFEA 274 (341)
T ss_dssp HHHHTTCHHHHHHHHHHTTCSC--HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhcCch--hchhhhh
Confidence 444542 44555566665543 4554333
No 167
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=21.61 E-value=4.5e+02 Score=23.75 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Q psy9904 348 KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKAC 408 (592)
Q Consensus 348 ~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~ 408 (592)
.+....++.|+..+... ...+...+..+..+..+..++..+++.+|..++.+|+.+|..-
T Consensus 68 ~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 34445566777766532 2234444455678899999999999999999999999887653
No 168
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=21.44 E-value=6.2e+02 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHHHHhh--hch----hhh-HhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhch
Q psy9904 70 LSDWNLRKCSAAALDVLANV--FRE----ELL-PVLLPILKETLFHHDWEIKESGILALGAIAEGCM 129 (592)
Q Consensus 70 ~~~w~~Rk~aa~~L~~la~~--~~~----~vl-~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~ 129 (592)
...|.--......|-++.+. +.. ..+ ...+-.|...+.|+|++.|...-..|-.|-..+.
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~ 161 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL 161 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh
Confidence 34688777777777666553 211 222 2334444567888999998877666666554433
No 169
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.04 E-value=3.6e+02 Score=22.46 Aligned_cols=36 Identities=8% Similarity=0.246 Sum_probs=28.4
Q ss_pred CchHHHHHHHhCCCChHHHHHHHHHHHHHHHHchhh
Q psy9904 376 SNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH 411 (592)
Q Consensus 376 ~~l~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~ 411 (592)
+.+...+...+....++-|-.++-++.++++..+..
T Consensus 41 ~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k 76 (145)
T 3d9j_A 41 KHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQ 76 (145)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhh
Confidence 345666666666667889999999999999999873
No 170
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=20.28 E-value=3.7e+02 Score=22.26 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=38.6
Q ss_pred chhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy9904 91 REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166 (592)
Q Consensus 91 ~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~ 166 (592)
+..-+.+++|.|...++|.+|.+-...+-.|. +|-+.++|.+.+.|+..+..=. .|.|..+.
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~-----------~~~~~l~p~I~~vl~s~D~~W~---ywil~~lv 86 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVV-----------LHQSIAMPHILTILQGNDIMWK---YWVIKLMI 86 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHH-----------HTHHHHHHHHHHHHHSSCHHHH---HHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH-----------HccHhhHHHHHHHHHcCChHHH---HHHHHHHH
Confidence 44456678888889999999997665554443 3445666666666654443222 34555444
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.18 E-value=2e+02 Score=26.32 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHhhch--hchhhhHhhHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q psy9904 112 EIKESGILALGAIAEGCM--NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168 (592)
Q Consensus 112 ~~R~aa~~aLg~iaeg~~--~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL~~l~~~ 168 (592)
...+..+.+|.++...-. +.+..| +..+..+...|..+++.+|..+...|+.+|.+
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~-~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTS-SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcC-cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 456677888888875321 223333 55789999999999999999999999998865
Done!