RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9904
(592 letters)
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 486 bits (1251), Expect = e-163
Identities = 373/555 (67%), Positives = 439/555 (79%), Gaps = 36/555 (6%)
Query: 55 EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIK 114
+ + D ++SDWNLRKCSAAALDVLANV+R+ELLP +LP+LKE LFHH+W +K
Sbjct: 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376
Query: 115 ESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 174
ESGIL LGAIAEGCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP
Sbjct: 377 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436
Query: 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 234
D+YLKPLM L+ + D V+ C +
Sbjct: 437 DTYLKPLM------------------TELLKRILDSNKRVQEAACSAFATLEE-EACTEL 477
Query: 235 DSYLKPLMT---------EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285
YL ++ +HKNLLILYDAIGTLADSVGHHLNKPEYI +LMPPLIQKWN+
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 286 LKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDA 345
LKDEDKDLFPLLECLSSVATALQ+GFLPYCEPVY+RCV+L+++TL Q M N+ P+Q++A
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405
PDKDFMIVALDLLSGLAEGL +I+ LV+ SNI+ L+YQCMQD MPEVRQSSFALLGDLT
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657
Query: 406 KACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLI 465
KACF HV PCI+DFMPILG NLNP+ ISVCNNATWAIGEIS+++G +M+ Y+PMV++QL+
Sbjct: 658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV 717
Query: 466 IIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFR 517
IINRPNTPKTLLENTAITIGRLGYVCP +VAP C+SLRNIRDNEEKDSAFR
Sbjct: 718 EIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFR 777
Query: 518 GMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQ 577
G+C MI+VNP GV+Q+FIFFCDAVASW PK+DL++MF KILHGF+ QVGDENW+RF+DQ
Sbjct: 778 GICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQ 837
Query: 578 FPDQLRDRLSAMYGV 592
FP L++RL+A YGV
Sbjct: 838 FPLPLKERLAAFYGV 852
Score = 102 bits (255), Expect = 7e-23
Identities = 63/447 (14%), Positives = 137/447 (30%), Gaps = 65/447 (14%)
Query: 68 SSLSDWNLRKCSAAALDVLANVFREELL---PVLLPILKETLFHHDWEIKESGILALGAI 124
+++ D + + ++ + + L P LLP L L D+ E AL I
Sbjct: 97 NNIGDSSPLIRATVG-ILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 155
Query: 125 AEGCMNGMVP-----HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179
E + LN ++P + +R+ ++++
Sbjct: 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF-------------- 201
Query: 180 PLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS--QPHDSY 237
++ ++ H++ + L D++ VR C L + PH
Sbjct: 202 -----IISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256
Query: 238 LKPLM------TEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQK--------- 282
+ M + L + TLA+ ++ L+P L+
Sbjct: 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII 316
Query: 283 ---WNILKDEDKDLFPLLECLSSVA-TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQ 338
++ D L + AL Y + + + L+++ +
Sbjct: 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE-----LLFHH 371
Query: 339 NPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSF 398
++ + +L +AEG + + ++ L QC+ D VR +
Sbjct: 372 EWVVKES--------GILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITC 421
Query: 399 ALLGDLTKACFSHVH-PCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
L S + M L + + V A A + + ++ Y+
Sbjct: 422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 481
Query: 458 PMVINQLIIIINRPNTPKTLLENTAIT 484
+++ L+ ++ L+ AI
Sbjct: 482 AYILDTLVFAFSKYQHKNLLILYDAIG 508
Score = 53.3 bits (127), Expect = 2e-07
Identities = 66/487 (13%), Positives = 149/487 (30%), Gaps = 61/487 (12%)
Query: 77 KCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL 136
C + + + L + E++++ AL + E M+ ++PH+
Sbjct: 196 ACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 254
Query: 137 NELVPFLITCLSDKKALVR--AITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP 194
+ +V +++ D+ V A W + QP C + +V
Sbjct: 255 HNIVEYMLQRTQDQDENVALEACEFWL------TLAEQPI-------------CKDVLVR 295
Query: 195 HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDA 254
HL +L+P L+ + + + D +++ A
Sbjct: 296 HLPKLIPVLVNGMKYSDIDIILLKGDVEGG-------SGGDDT----ISDWNLRKCSAAA 344
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
+ LA+ L + ++P L + + E + L ++A G +PY
Sbjct: 345 LDVLANVYRDEL-----LPHILPLLKE--LLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
+ + + Q L + + LS A +
Sbjct: 398 LPEL----IPHLIQCL-----SDKKALVRSI--------TCWTLSRYAHWVVSQPPD-TY 439
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
+M L + + D V++++ + L + + + P ++ + L +
Sbjct: 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 499
Query: 435 CNNATWAIGEISVKLGEDMRR--YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVC 492
AIG ++ +G + + Y+ M++ LI N L + +
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559
Query: 493 PHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLK 552
P C + N + + + M + + A+ S E L
Sbjct: 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIV-ALDLLSGLAEGLG 618
Query: 553 EMFHKIL 559
+++
Sbjct: 619 GNIEQLV 625
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 254 bits (650), Expect = 8e-75
Identities = 84/565 (14%), Positives = 181/565 (32%), Gaps = 74/565 (13%)
Query: 16 VEEDEMIPDRDEDIRPRFHKSKRSV-----KAEGENMNMGENGGEEVEEEDDDLDDDSSL 70
VE I + + DI + +S A ++ N + +++D +DD
Sbjct: 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDD--- 343
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN 130
DWN+ + A L + A +L +L +++ + +W +E+ ++A G+I +G
Sbjct: 344 -DWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK 402
Query: 131 GMV-PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189
++++ +P ++ ++D+ V+ T W + R + V
Sbjct: 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQ------------ 450
Query: 190 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV---VSQPHDSYLKPLM---- 242
HL +V + L D V WT+ + P ++ L+
Sbjct: 451 -----HLPGVVQACLIGLQDHPK-VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504
Query: 243 -------TEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFP 295
E + A+ T+ + + E + + ++ K D++
Sbjct: 505 GAANRIDNEFNARASAFSALTTMVEYATDTV--AETSASISTFVMDKLGQTMSVDENQLT 562
Query: 296 LLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
L + S LQ+ L V R+ S +E + M +
Sbjct: 563 LEDAQS--LQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLE-KKDSAFIEDDVF 619
Query: 356 DLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPC 415
+S LA L + + L + + V ++ + D++ +
Sbjct: 620 YAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677
Query: 416 ISDFMPILGQNLNPD--LISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNT 473
M +L Q ++ + G+I+ +G D Y+ ++ + N
Sbjct: 678 SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPE 737
Query: 474 PKTLLENTAITIGRLGYV------------CPHDVAP-------LCSSLRNIRDNEEKDS 514
TL + P + P + + +D+
Sbjct: 738 NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDA 797
Query: 515 AFRGMCAMI----TVNPGGVVQEFI 535
R +I + P G +++F
Sbjct: 798 TSRAAVGLIGDIAAMFPDGSIKQFY 822
Score = 92.6 bits (229), Expect = 9e-20
Identities = 53/426 (12%), Positives = 122/426 (28%), Gaps = 69/426 (16%)
Query: 68 SSLSDWNLRKCSAAA-----LDVLANVFREELLPVLLPILKETLFH-----HDWEIKESG 117
L D + + ++ LA + ++ + +++ + S
Sbjct: 461 IGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520
Query: 118 ILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY 177
AL + E + + + F++ L ++ ++
Sbjct: 521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ------------LTLEDAQS 568
Query: 178 LKPLMTEMLGCMNGMVPHLNELV-PFLITCLSDKKALVRAITCWTLSRYSHWVVS----- 231
L+ L + +L + ++ V P + L+ + + +S
Sbjct: 569 LQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS 628
Query: 232 -----QPHDSYLKPLM------TEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLI 280
+ + P + + + I +++S+ Y +M L
Sbjct: 629 LGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR--RYSDAMMNVLA 686
Query: 281 QKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNP 340
Q + + +L +A+ + A F+PY + CV+
Sbjct: 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN------GT 740
Query: 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSN-SNIMHLLYQCMQDPMP----EVRQ 395
+ + LD G+ GL ++L I + Q +DP +
Sbjct: 741 LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800
Query: 396 SSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI-----------SVCNNATWAIGE 444
++ L+GD+ GQ+ D I + + A WA +
Sbjct: 801 AAVGLIGDIAAMFPDGS------IKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ 854
Query: 445 ISVKLG 450
+L
Sbjct: 855 QKRQLS 860
Score = 78.3 bits (192), Expect = 3e-15
Identities = 72/543 (13%), Positives = 156/543 (28%), Gaps = 126/543 (23%)
Query: 70 LSDWNLRKCSAAALDVLANVF--------REELLPVLLPILKETLFHHDWEIKESGILAL 121
S + AAL+ LA+ RE L+ ++ E D E++ + L
Sbjct: 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248
Query: 122 GAIAEGCMNGMVPHLNELVPFLITCLS---DKKALVRAITCWTLSRYSHWVVSQPHDSYL 178
I M P++ + + L + K + W+ ++ +
Sbjct: 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308
Query: 179 KPLMTEMLGCMNGM---VPHLNE------------------------------------- 198
+ + ++ + VP+L
Sbjct: 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE 368
Query: 199 -LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLI--LYD-- 253
++ F+ ++ R ++ P + + ++ + D
Sbjct: 369 PVLEFVEQNITADNWRNREAAVMAFG----SIMDGPDKVQRTYYVHQALPSILNLMNDQS 424
Query: 254 ---------AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK------------- 291
IG +ADSV ++ +++ ++ + L+D K
Sbjct: 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL---IGLQDHPKVATNCSWTIINLV 481
Query: 292 -------------DLFPLLECL---------------------SSVATALQAGFLPYCEP 317
L++ L +++
Sbjct: 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541
Query: 318 VYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSN 377
+ + + QT++ + + + ++L+ LA + S+ ++
Sbjct: 542 ISTFVMDKLGQTMSVDENQLTLED-----AQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 378 -IMHLLYQCMQ-DPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVC 435
+M L ++ ++ + F + L + + F P L + LN V
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 436 NNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD 495
A I +IS L ED RRY ++N L +I+ PN + L G + D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 496 VAP 498
P
Sbjct: 717 FIP 719
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 247 bits (631), Expect = 4e-72
Identities = 103/568 (18%), Positives = 206/568 (36%), Gaps = 82/568 (14%)
Query: 6 EIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLD 65
E + +++ + E RP H SK K + + + + D+ D
Sbjct: 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL---VPILTQTLTKQDEND 337
Query: 66 DDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIA 125
DD DWN K + L +LA ++++P +LP +KE + + DW +++ ++A G I
Sbjct: 338 DDD---DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394
Query: 126 EGCM-NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMT 183
EG + + P + + +P LI + D +VR WT+ R + +D YL PL+
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454
Query: 184 EMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT 243
++ + + V + CW S + +++
Sbjct: 455 CLIEGL-------------------SAEPRVASNVCWAFSSLAE----AAYEAADVADDQ 491
Query: 244 EHKNLLILYDAIGTLADSVGHHLNKP--EYISLLMPPLIQKWNILKDEDKDLFPLLECLS 301
E L + + + ++P +L I+K+ KD +P ++ +
Sbjct: 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551
Query: 302 SVATALQAGFLPYCEPV--------YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIV 353
V L + + SL+ TL + Q+ + M
Sbjct: 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD-ALQISDVVMAS 610
Query: 354 ALDLLSGLAEGLDMHIDSLVSNSNIMHLL----YQCMQDPMP------------EVRQSS 397
L + A + D+L++ S ++ +L + M+ P +V ++
Sbjct: 611 LLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAA 670
Query: 398 FALLGDLTKACFSHVHPCISDFMPILGQNLNPDLI--SVCNNATWAIGEISVKLGEDMRR 455
L+GDL +A S++ P + M +L +NL + + SV G+I++ +G + ++
Sbjct: 671 VGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730
Query: 456 YVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSA 515
Y+ +V+N L + L +R E A
Sbjct: 731 YLEVVLNTLQQASQAQVDKSDY--------------------DMVDYLNELR--ESCLEA 768
Query: 516 FRGMCAMITVNPGGVVQEFIFFCDAVAS 543
+ G+ + + V + + V
Sbjct: 769 YTGIVQGLKGDQENVHPDVMLVQPRVEF 796
Score = 99.2 bits (246), Expect = 8e-22
Identities = 50/408 (12%), Positives = 106/408 (25%), Gaps = 98/408 (24%)
Query: 95 LPVLLPILKETLFHHDWE---IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS--- 148
+++ L ET D ++ S +L I + P + + ++ L
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562
Query: 149 ------------DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN------ 190
+ ++++ C TL V Q +M +L
Sbjct: 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622
Query: 191 -------------------GMVPHLNELVPFLITCLSDKKAL-VRAITCWTLSRYSHWVV 230
+ ++ PFL L + V +
Sbjct: 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV-------- 674
Query: 231 SQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDED 290
G L ++ ++ + +M L++
Sbjct: 675 -------------------------GDLCRALQSNIIP--FCDEVMQLLLENLGNENVHR 707
Query: 291 KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDF 350
+L +A A+ F Y E V + +++ + +
Sbjct: 708 SVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDK------SDYDMVDYLNEL 761
Query: 351 MIVALDLLSGLAEGLDMHIDSLVSN--------SNIMHLLYQCMQDP--MPEVRQSSFAL 400
L+ +G+ +GL +++ + I+ + D V + L
Sbjct: 762 RESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGL 821
Query: 401 LGDLTKACFSHVHPCISD---FMPILGQNLNPDLISVCNNATWAIGEI 445
+GDL A V + +L + A WA E+
Sbjct: 822 IGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869
Score = 51.0 bits (121), Expect = 9e-07
Identities = 55/482 (11%), Positives = 130/482 (26%), Gaps = 45/482 (9%)
Query: 75 LRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVP 134
+ AN +E ++ ++ E D ++ + + L I M
Sbjct: 195 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET 254
Query: 135 HLNELV-PFLITCLSDKKALVR--AITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG 191
++ + I + V I W+ ++ +
Sbjct: 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314
Query: 192 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ----PHDSYLKPLMTEHKN 247
L LVP L L+ + W + + + D + ++ K
Sbjct: 315 AKGALQYLVPILTQTLTKQDEND-DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373
Query: 248 LLILYD---------AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLL 297
+ D A G + + KP + MP LI ++KD +
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLI---ELMKDPSVVVRDTAA 429
Query: 298 ECLSSVATALQAGFLP--YCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVAL 355
+ + L + Y P+ + + + + VA
Sbjct: 430 WTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVAD 489
Query: 356 DLLSGLAEGLDMHIDSLVS------------NSNIMHLLYQCMQDPMPEVRQSSFALLGD 403
D L + +V +N+ Y+ + + + + + +
Sbjct: 490 DQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549
Query: 404 LTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLG-EDMRRYVPMVIN 462
T + + I + + + + + K+ +D + +V+
Sbjct: 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMA 609
Query: 463 QLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDS 514
L+ + + E+ + + L V + L L+N + + +
Sbjct: 610 SLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLA 669
Query: 515 AF 516
A
Sbjct: 670 AV 671
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 131 bits (330), Expect = 4e-33
Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 6 EIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLD 65
E + +++ + E RP H SK K + + + + D
Sbjct: 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV------PILTQTLTKQD 334
Query: 66 DDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIA 125
++ DWN K + L +LA ++++P +LP +KE + + DW +++ ++A G I
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394
Query: 126 EGCMNGMV-PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-HDSYLKPLMT 183
EG + P + + +P LI + D +VR WT+ R + +D YL PL+
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454
Query: 184 EMLGCMN 190
++ ++
Sbjct: 455 CLIEGLS 461
Score = 52.9 bits (126), Expect = 2e-07
Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 28/297 (9%)
Query: 192 MVPHLNELVPFLITCL--SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLL 249
+ NE++ +I + + V+ L + + + + +
Sbjct: 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225
Query: 250 ILYD----AIGTLADSVGHHLNKPEYISLLMPPLIQK--WNILKDEDKDL-FPLLECLSS 302
+ L + V +Y+ M P + +K + ++ +E S+
Sbjct: 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285
Query: 303 VAT-----------ALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFM 351
V A + G P + +L ++ E D D +
Sbjct: 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345
Query: 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF-S 410
A L LA + I V + + + +++P R ++ G + + S
Sbjct: 346 KAAGVCLMLLATCCEDDIVPHV-----LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400
Query: 411 HVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRR--YVPMVINQLI 465
+ P + MP L + + + V + A W +G I L E Y+ ++ LI
Sbjct: 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457
Score = 38.7 bits (89), Expect = 0.005
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 8/150 (5%)
Query: 68 SSLSDWNLRKCSAAALDVL-----ANVFREELLPVLLPILKETLFHHDWEIKESGILALG 122
N++ + AL AN +E ++ ++ E D ++ + + L
Sbjct: 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242
Query: 123 AIAEGCMNGMVPHLNELV-PFLITCLSDKKALVR--AITCWTLSRYSHWVVSQPHDSYLK 179
I M ++ + I + V I W+ ++ +
Sbjct: 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302
Query: 180 PLMTEMLGCMNGMVPHLNELVPFLITCLSD 209
L LVP L L+
Sbjct: 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTK 332
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 132 bits (333), Expect = 2e-32
Identities = 63/475 (13%), Positives = 146/475 (30%), Gaps = 102/475 (21%)
Query: 51 ENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHD 110
E E ++ + + NL K L L ++ + ++ L+ + +
Sbjct: 431 EVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTE 490
Query: 111 WEIK--ESGILALGAIAEGCM-NGMVPHLNELVPFLITCL-----SDKKALVRAITCWTL 162
W K + A+G+I+ L ++ L+ D KA++ + + +
Sbjct: 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIV 550
Query: 163 SRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSD--KKALVRAITCW 220
+Y ++ + H +LK ++ ++ M+ + ++ ++ ++ V+
Sbjct: 551 GQYPRFLRA--HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGE 608
Query: 221 TLSRYSHWVVS-QPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPL 279
+ + + L+P + + Y+A+G + + + I M
Sbjct: 609 VMPFIDEILNNINTIICDLQP-----QQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLP 663
Query: 280 IQKW-----------NILKDED--KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSL- 325
Q W +ILKD + K L +L+ A+ F+ +Y +++
Sbjct: 664 NQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY 723
Query: 326 --IEQTLNQHMANSQNPEQFDAPDKDFMIV------------------------------ 353
+ + ++ + + + V
Sbjct: 724 KCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLL 783
Query: 354 ------------------ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC-----MQDP- 389
L ++ + L HI + + I +++C +D
Sbjct: 784 DAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ--IFDAVFECTLNMINKDFE 841
Query: 390 -MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIG 443
PE R + F LL + CF P V ++ WA
Sbjct: 842 EYPEHRTNFFLLLQAVNSHCF-----------PAFLAIPPAQFKLVLDSIIWAFK 885
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 129 bits (325), Expect = 2e-31
Identities = 53/398 (13%), Positives = 133/398 (33%), Gaps = 29/398 (7%)
Query: 55 EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIK 114
E +E + + L K L L ++ + +++ L + +W
Sbjct: 409 VENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWH 468
Query: 115 --ESGILALGAIAEGCMNGMVPH-LNELVPFLITCLS-----DKKALVRAITCWTLSRYS 166
+ A+G+I+ + ++ L+ D KA+V + + + +Y
Sbjct: 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP 528
Query: 167 HWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 226
++ + H ++L+ ++ ++ M+ + ++ + K I S
Sbjct: 529 RFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586
Query: 227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN-- 284
+ + L + + + Y A G + + +S LM W+
Sbjct: 587 IQTIIRDIQKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644
Query: 285 ---------ILKDED--KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIE---QTL 330
+L D + K + +++ +V T++ A F P +Y + L +
Sbjct: 645 VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMI 704
Query: 331 NQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHID-SLVSNSNIMHLLYQCMQDP 389
+ +A + + ++L + + + V + LL ++D
Sbjct: 705 SAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDY 764
Query: 390 MPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL 427
M V + A + + V I + ++ Q++
Sbjct: 765 MNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSV 802
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 115 bits (288), Expect = 5e-27
Identities = 61/467 (13%), Positives = 130/467 (27%), Gaps = 74/467 (15%)
Query: 58 EEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF-----HHDWE 112
E+ D R+ + +V + +L +L +L E + W
Sbjct: 420 EKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWT 479
Query: 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK-KALVRAITCWTLSRYSHWVVS 171
E+ I + ++AE + L+ L +K + T+ Y +W++
Sbjct: 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME 539
Query: 172 QPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVS 231
P ++ + L+ L+ + + L R +
Sbjct: 540 NPA--------------------YIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLK 579
Query: 232 QPHDSYLKPLMT-------EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284
D L ++ + + L +IG L + P+Y+ +++ P ++
Sbjct: 580 PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE-EIPKYLDIIVSPCFEELQ 638
Query: 285 ILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFD 344
+ D +S + +LN + +
Sbjct: 639 AICQADSKTPAARIRTIFRL----------------NMISTLFSSLNTDVDEQATDQPIV 682
Query: 345 APDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDL 404
P M + + +AE V +++ M+ + +R S +L DL
Sbjct: 683 QPVLLVMQRTMPIFKRIAE-------MWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL 735
Query: 405 TKACFS----HVHPCISDFMPILGQNL--NPDLISVCNNATWAIGEISVKLGE------- 451
+ + + + + S KL E
Sbjct: 736 CLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNF 795
Query: 452 ----DMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
D + Q+I I + KTL + + + G P
Sbjct: 796 SNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE 842
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 105 bits (263), Expect = 7e-24
Identities = 71/547 (12%), Positives = 155/547 (28%), Gaps = 86/547 (15%)
Query: 42 AEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPV---L 98
+ + M +GG++ ++ DD D W +R+ +A LD + + E L +
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV 375
Query: 99 LPILKETLFHHDWEIKESGILALGAI-------------------AEGCMNGMVPHLNEL 139
P L + +K A ++ E + + + +
Sbjct: 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 435
Query: 140 VPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNEL 199
V L + +K R L+ + + H+ L
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNV-------------------LPGALTQHIPVL 476
Query: 200 VPFLITCLSDKKALVRAITCWTLSRYSHWVVS------QPHDSYLKPLMT---EHKNLLI 250
VP +I L+DK + + LS + + PH L P + I
Sbjct: 477 VPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 535
Query: 251 LYDAIGTLADSV--------GHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSS 302
+A+ V + YI L I++ + + + C+
Sbjct: 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
Query: 303 VATALQAGFLPYCEPVYRRCVSLIEQTLNQ-----------------------HMANSQN 339
+ L + + ++ + +
Sbjct: 596 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655
Query: 340 PEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFA 399
+ + L L L + + + + + ++ L + + V Q + +
Sbjct: 656 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMID-AVLDELPPLISESDMHVSQMAIS 714
Query: 400 LLGDLTKACFSHVHPCISDFMP-ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458
L L K S + + ++G +P L +A + V G + Y+
Sbjct: 715 FLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMD 774
Query: 459 MV--INQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAF 516
++ + + + T K + A + L CP + + N +
Sbjct: 775 LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSI 834
Query: 517 RGMCAMI 523
R + +
Sbjct: 835 RLLALLS 841
Score = 67.4 bits (163), Expect = 8e-12
Identities = 55/549 (10%), Positives = 158/549 (28%), Gaps = 53/549 (9%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF-HHDWEIKESGILALG 122
L + +RK + AL L + L+ L L + + I +
Sbjct: 180 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIA 239
Query: 123 AIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLM 182
AI+ + + +L +++P ++ + +R + ++
Sbjct: 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR-------------------EYCIQAFE 280
Query: 183 TEMLGCMNGMVPHLNELVPFLITCLS-DKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 241
+ + C + PH++ ++ + L+ D + + S +
Sbjct: 281 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 340
Query: 242 MTEHKNLLILYDA---IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLE 298
+ + + A + + + L PE+ + P LI + E+ +
Sbjct: 341 DDDDMSWKVRRAAAKCLDAVVSTRHEML--PEFYKTVSPALIS--RFKEREENVKADVFH 396
Query: 299 CLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMAN--SQNPEQFDAPDKDFMIVALD 356
S+ + C+P L + N +Q +
Sbjct: 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN 456
Query: 357 LLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP--EVRQSSFALLGDLTKACFSHV-H 413
+L+ L L + + ++ + + D ++ + + L + V H
Sbjct: 457 MLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH 514
Query: 414 PCISDFMPILGQNLNPDLISVCNNATW-------AIGEISVKLGEDMRRYVPMVINQLII 466
P + +P + + + + A I + D Y+ + I
Sbjct: 515 PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574
Query: 467 IINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSS-----LRNIRDNEEKDSAFRGMCA 521
+ + + + E +G++ ++ + L +++ + + + +
Sbjct: 575 RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTL 634
Query: 522 MITVNPGGVVQEFIFFCDAVASWSTPKEDLK------EMFHKILHGFRTQVGDENWQRFA 575
+ ++ + + + K ++ + +
Sbjct: 635 IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694
Query: 576 DQFPDQLRD 584
D+ P + +
Sbjct: 695 DELPPLISE 703
Score = 66.3 bits (160), Expect = 2e-11
Identities = 45/354 (12%), Positives = 112/354 (31%), Gaps = 24/354 (6%)
Query: 194 PHLNELVPFLITCLSDKKALVR--AITCWT-LSRYSHWVVSQPHDSYLKPLMTEHKNLL- 249
++V ++ L DK V+ A+ C L + L M K L
Sbjct: 44 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLR 103
Query: 250 -ILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQ 308
I + T+ + + + + + + + +D+ LE L +A L
Sbjct: 104 DISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163
Query: 309 AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMH 368
+ ++ + L + I+AL L M
Sbjct: 164 R-QGGLLVNFHPSILTCLLPQLTS----------PRLAVRKRTIIALGHLV-------MS 205
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428
++V I HLL + ++ ++ + +++ + + +P++ + N
Sbjct: 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265
Query: 429 PDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINR-PNTPKTLLENTAITIGR 487
D + A + +++ +V +IN + + PN + +
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325
Query: 488 LGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAV 541
G + S + + + +A + + A+++ + + + A+
Sbjct: 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPAL 379
Score = 54.7 bits (130), Expect = 8e-08
Identities = 51/371 (13%), Positives = 109/371 (29%), Gaps = 55/371 (14%)
Query: 80 AAALDVLANVFR------EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMV 133
ALD++A++ P +L L L +++ I+ALG + C N +
Sbjct: 152 LEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF 211
Query: 134 PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMV 193
L + L + ++ S + +
Sbjct: 212 VDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR-------------------IG 250
Query: 194 PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYD 253
+L +++P ++ + +R + + ++ ++ L YD
Sbjct: 251 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR-RCPKEVYPHVSTIINICLKYLT-YD 308
Query: 254 AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPL----LECLSSVATALQA 309
D + D+D + + +CL +V +
Sbjct: 309 PNYNYDDEDEDENAMDADGGDDDDQGSD--DEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 310 GFLPYCEPVYRRCVSLIEQTLNQH----------MANSQNPEQFDAPDKDFMIVALDLLS 359
+ + V +S ++ + P Q D D M L+
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 360 GLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDF 419
L + NI+ L++ M++ + RQ F +L +L + I
Sbjct: 427 MLQSQVP----------NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVL 476
Query: 420 MPILGQNLNPD 430
+P + +LN
Sbjct: 477 VPGIIFSLNDK 487
Score = 52.0 bits (123), Expect = 5e-07
Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 7/182 (3%)
Query: 49 MGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVL---LPILKET 105
+G+ + E L R A+ + + + P+L + +T
Sbjct: 955 LGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT 1014
Query: 106 LFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 165
L D ++ ++ + A + + L+ ++P L +K L+R + + +
Sbjct: 1015 LEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREV---EMGPF 1071
Query: 166 SHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 225
H V L + E + + L D ++ +T L R
Sbjct: 1072 KHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYD-IKMLTFLMLVRL 1130
Query: 226 SH 227
S
Sbjct: 1131 ST 1132
Score = 44.7 bits (104), Expect = 9e-05
Identities = 71/592 (11%), Positives = 165/592 (27%), Gaps = 94/592 (15%)
Query: 57 VEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLP----VLLPILKETLFHHDWE 112
+ E L + L+ + +ALD+L + + L +L L + D
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 113 IKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSD-------KKALVRAITCWTLSRY 165
+ + I L +A+ + + ++ LI + A++ ++
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT 767
Query: 166 SHWVVSQPHDSYLKPLMTEML--------------------GCMNGMVPHLNELVPFLIT 205
++ P+ ++ C + + + +
Sbjct: 768 NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN 827
Query: 206 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHH 265
S + A+ + + Q + + + A L +
Sbjct: 828 SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGN 887
Query: 266 LNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVY------ 319
L + +P ++Q I + L +++A G PY E ++
Sbjct: 888 LPE------YLPFVLQ--EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKH 939
Query: 320 --------RRCVSLIEQTLNQHMANSQNP---EQFDAPDKDFMIVALDLLSGLAEGLDMH 368
R V+ L + P + + +
Sbjct: 940 CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP 999
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL- 427
ID L+ N + + ++DP VR+ + S + + +P L
Sbjct: 1000 IDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK 1057
Query: 428 -NPDLISVCNNATWA-IGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLE------ 479
+LI + + + + + + +++ + ++ + +
Sbjct: 1058 VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHY 1117
Query: 480 ----NTAITIGRLGYVCPHDVAP----LCSSLRNI---------------RDNEEKDSAF 516
T + + RL +CP V L LR + +E K SA
Sbjct: 1118 DIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAM 1177
Query: 517 RGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGD 568
R + A++T+ S + +L +F I + +
Sbjct: 1178 RAVAALLTIPEAEKSPLM----SEFQSQISSNPELAAIFESIQKDSSSTNLE 1225
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 98.5 bits (244), Expect = 1e-21
Identities = 47/378 (12%), Positives = 118/378 (31%), Gaps = 42/378 (11%)
Query: 55 EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIK 114
EE D + + ++ ++L L L +L + + W+
Sbjct: 407 EEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHT 466
Query: 115 ESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 174
E+ + +IAE + L+ LI +S + +T+ S W+ P
Sbjct: 467 EALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHP- 524
Query: 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 234
+ ++ +L + ++ + C K L +
Sbjct: 525 -VMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAA----------NIVAVS 573
Query: 235 DSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKD-- 292
L + + + L A+G L ++ + + L+ P IQ+ L +E +
Sbjct: 574 QDVLMKQIHKTSQCMWLMQALGFLLSALQVE-EILKNLHSLISPYIQQLEKLAEEIPNPS 632
Query: 293 ----LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDK 348
+ +L LS++ T L ++ H + + PE P
Sbjct: 633 NKLAIVHILGLLSNLFTTLD---------------------ISHHEDDHEGPELRKLPVP 671
Query: 349 DFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKAC 408
+ +L + + + + ++++ ++ + + + + ++ L +
Sbjct: 672 QGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEML 731
Query: 409 FSHV-HPCISDFMPILGQ 425
+ + + Q
Sbjct: 732 GRMYSTIPQASALDLTRQ 749
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 72.4 bits (177), Expect = 2e-13
Identities = 54/402 (13%), Positives = 128/402 (31%), Gaps = 63/402 (15%)
Query: 71 SDWNLRKCSAAALDVLANVFR-EELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM 129
+R+ +A+ L A V + + ++P+ ++ + A IA+
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL- 234
Query: 130 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189
++P L DK VR + + V + + L P ++
Sbjct: 235 -PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 190 NGMV----------------------PHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 227
V +++++P + +SD V++ + S
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 228 WVVSQPHDSYLKPLMTEH---KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN 284
+ +L PL + + + I L V + + L+P +++
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC-VNEVIGIRQLSQSLLPAIVE--- 409
Query: 285 ILKDEDKDL-FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIE-----------QTLNQ 332
+ +D + ++E + +A L F E + C++ + L +
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 333 HMANSQNPEQFD---------APDKDFM--IVALDLLSGLAEGLDMHIDSLVSNSNIMHL 381
+ + D +++ + L ++ L+E I + +++
Sbjct: 468 LVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT----KHMLPT 523
Query: 382 LYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPIL 423
+ + DP+ VR + L + + S+ PIL
Sbjct: 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTL--QSEVKPIL 563
Score = 65.4 bits (159), Expect = 2e-11
Identities = 47/361 (13%), Positives = 105/361 (29%), Gaps = 50/361 (13%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLP-VLLPILKETLFHHDWEIKESGILALGAIAE--G 127
W +R A L E+ L+P + + + E++ + + E
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313
Query: 128 CMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLG 187
+++++P + +SD V++ + S + +L PL L
Sbjct: 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK 373
Query: 188 CMN------------------GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 229
G+ L+P ++ D K VR + + +
Sbjct: 374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 433
Query: 230 VSQPHDSYLKPLMTE---HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNIL 286
+ D L L I A L + K + ++P ++
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK-KLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 287 KDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAP 346
+ L C++ ++ + + + + + +AN +
Sbjct: 493 NYLHRMTT--LFCINVLSEVCGQ------DITTKHMLPTVLRMAGDPVANVR-------- 536
Query: 347 DKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTK 406
L + +D+ S + +L + QD +V+ + L L+
Sbjct: 537 -----FNVAKSLQKIGP----ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587
Query: 407 A 407
A
Sbjct: 588 A 588
Score = 65.4 bits (159), Expect = 3e-11
Identities = 64/480 (13%), Positives = 146/480 (30%), Gaps = 58/480 (12%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D D L + V E + LLP L+ + +++ + +L A
Sbjct: 54 LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRA 113
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT 183
I+ + VP + R C S P ++
Sbjct: 114 ISHEHSPSDL--EAHFVPLVKRLAGGDWFTSRTSACGLF-------------SVCYPRVS 158
Query: 184 EMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL-- 241
+ EL + SD +VR L ++ + S + P+
Sbjct: 159 SAV---------KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS 209
Query: 242 -MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLEC 299
+ + + A+ ++ L + + +L+MP L Q +D+ + + + +
Sbjct: 210 NLASDEQDSVRLLAVEACV-NIAQLLPQEDLEALVMPTLRQ---AAEDKSWRVRYMVADK 265
Query: 300 LSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLS 359
+ + A+ + + Q++ E A A +
Sbjct: 266 FTELQKAVGPEITK----------TDLVPAF-QNLMKDCEAEVRAA--------ASHKVK 306
Query: 360 GLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDF 419
E L V S I+ + + + D V+ + +++ L + I
Sbjct: 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL--SPILGKDNTIEHL 364
Query: 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPN--TPKTL 477
+P+ L + V N + ++ +G +R+ ++ ++ + +
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 478 LENTAITIGRLG-YVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIF 536
+E + G+LG + LC + +++A + ++ I
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 67.6 bits (164), Expect = 6e-12
Identities = 54/417 (12%), Positives = 117/417 (28%), Gaps = 86/417 (20%)
Query: 46 NMNMGENGGEEVEEE-DDDLDDDSSLSDW-NLRKCSAAALDVLANVFREELLPVLLPILK 103
N+ + E E E++ + + D SD R+ L L + + L +K
Sbjct: 346 NVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMK 405
Query: 104 ETLFHH------DWEIKESGILALGAIAEGC------------MNGMVPHLNELVPFLIT 145
+ + +W+ K+ I A+A + +V + + +T
Sbjct: 406 GFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT 465
Query: 146 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLIT 205
+ ++R + + + + L EL+P L T
Sbjct: 466 SNNIPHIILRVDAIKYIYTFRNQLTKA----------------------QLIELMPILAT 503
Query: 206 CLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHH 265
L + +V T+ + +L + ++ + A
Sbjct: 504 FLQTDEYVVYTYAAITIEK-----------------------ILTIRESNTSPAFIFHKE 540
Query: 266 LNKPEYISLLMPPLIQKWNILKDEDKDLFP---LLECLSSVATALQAGFLPYCEPVYRRC 322
+L+ LI + L L+ + V + P
Sbjct: 541 DISN-STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL-------F 592
Query: 323 VSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLL 382
L+ Q + ++NP F + L + L + +DS+ M
Sbjct: 593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM------MPTF 646
Query: 383 YQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNAT 439
+ + E F ++ + + P+ L P++ + N
Sbjct: 647 LTVFSEDIQEFIPYVFQIIAFVVEQS----ATIPESIKPLAQPLLAPNVWELKGNIP 699
Score = 55.3 bits (132), Expect = 5e-08
Identities = 41/388 (10%), Positives = 110/388 (28%), Gaps = 45/388 (11%)
Query: 77 KCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL 136
+ V + ++ + L ++ + A+ I L
Sbjct: 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL 494
Query: 137 NELVPFLITCLSDKKALVRAITCWTLSR----------YSHWVVSQPHDSYLKPLMTEML 186
EL+P L T L + +V T+ + + + + + L+ ++
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554
Query: 187 GCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH-DSYLKPLMTEH 245
+ +L +++ R + S + + +
Sbjct: 555 ALILKHGSSPEKLAENEFLM----RSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP 610
Query: 246 KNLLILYDAIGTLADSV--GHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSS 302
N + ++ + N P + +MP + ++ E F ++ +
Sbjct: 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670
Query: 303 VATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLA 362
+ + P +P L+ + + N + K F+ + L
Sbjct: 671 QSATIPESIKPLAQP-------LLAPNVWELKGNIPAVTRL---LKSFIKTDSSIFPDLV 720
Query: 363 EGLDMHIDSLVSNSN------------IMHLLYQCMQDPMPEVRQSSFALLGDLTKACFS 410
L + L+++ ++ + ++ + ++ LL L +
Sbjct: 721 PVLGI-FQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAV---LLLQRLQNSKTE 776
Query: 411 HVHPCISDFMPILGQNLNPD-LISVCNN 437
++ F ++ L D LI +
Sbjct: 777 RYVKKLTVFFGLISNKLGSDFLIHFIDE 804
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 66.5 bits (161), Expect = 1e-11
Identities = 54/447 (12%), Positives = 121/447 (27%), Gaps = 83/447 (18%)
Query: 55 EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF------- 107
+E +E DDD D + +RK D + ++ + + +L
Sbjct: 394 DESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSP 453
Query: 108 HHDWEIKESGILALGAIAEGCMNGM-----VPHLNELVPFLITCL------SDKKALVRA 156
+ W++ E + EG V ++ ++ + LV+
Sbjct: 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQL 513
Query: 157 ITCWTLSRYSHWVVSQPHDSYLKPLMTEMLG-------------------------CMNG 191
+ L RY+ + + + L+ +G
Sbjct: 514 LYMEILVRYASFFDYESA--AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571
Query: 192 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLIL 251
+V + + L L+ + V + + S S + L L
Sbjct: 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQ------------LYL 619
Query: 252 YDAIGTLADSVGH-HLNKPEYISLLMPPLIQKWNILKDEDK-------DLFPLLECLSSV 303
++ +G L S + Y L+ LI K N D ++ L + +
Sbjct: 620 FETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNF 679
Query: 304 ATALQAGFLPYCEPV--YRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGL 361
A A + + + I L++ N + A +
Sbjct: 680 AKGFPARGSEEVAWLASFNKASDEIFLILDRM---GFNEDIRGAVRF--------TSGRI 728
Query: 362 AEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMP 421
+ + V L+ + + + L ++ + +P
Sbjct: 729 INVVGPDMLPKVPQ-----LISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLP 783
Query: 422 ILGQNLNPDLISVCNNATWAIGEISVK 448
L + L + A+ + ++
Sbjct: 784 TLLMRIFSSLSAAPQGTDDAVKQNDLR 810
Score = 33.7 bits (76), Expect = 0.18
Identities = 36/293 (12%), Positives = 75/293 (25%), Gaps = 50/293 (17%)
Query: 174 HDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233
+ L L P+LI LSD LS + +
Sbjct: 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKES 367
Query: 234 HDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL 293
L + E + +L +++ + E P ++ ++ K L
Sbjct: 368 SSKELSASLKEF---------LKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL 418
Query: 294 FPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANS---------------Q 338
+ ++S+ ++L F Y +S ++ +
Sbjct: 419 KIFQDTINSIDSSL---FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475
Query: 339 NPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIM------------------- 379
P+ F V +L+ + + M
Sbjct: 476 GPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA 535
Query: 380 ----HLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLN 428
+ + + + VR ++ L K+ V + +LG LN
Sbjct: 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 58.9 bits (142), Expect = 7e-10
Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 18/177 (10%)
Query: 91 REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLS-D 149
++L + + L W +++ + L + LV L ++ D
Sbjct: 9 PVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 150 KKALVRAITCWTLSRYSHWVVS--QPHDSYLKPLMTEMLGCMNGMV-------------- 193
++ A+ L+ + + + S P + E V
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128
Query: 194 PHLNELVPFLITCLSDKKALVRAITCWTLSRY-SHWVVSQPHDSYLKPLMTEHKNLL 249
L ++ LS+K V++ T ++R + + + LK L T L
Sbjct: 129 TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Score = 55.4 bits (133), Expect = 1e-08
Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 26/185 (14%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLP---VLLPILKETLFHHDWEIKESGILALGAIAEG 127
S+ L + L +LA + +P L E + + A+ AI
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA- 127
Query: 128 CMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLG 187
L ++ LS+K V++ T ++R + L
Sbjct: 128 -----STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK------- 175
Query: 188 CMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKN 247
L L+ L++ VR + L + + L +
Sbjct: 176 ----------LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
Query: 248 LLILY 252
+
Sbjct: 226 KIKEC 230
Score = 37.7 bits (87), Expect = 0.005
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 23/173 (13%)
Query: 253 DAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPL-LECLSSVATALQAGF 311
+ + L L EY +L+ ++K I KD + L + +CL+ +A L F
Sbjct: 37 EVLEKLLTDHPK-LENGEYGALV--SALKKV-ITKDSNVVLVAMAGKCLALLAKGLAKRF 92
Query: 312 LPYCEPV-----------YRRCVSLIEQTLNQHMANSQNPEQFDA-----PDKDFMI--V 353
Y V+ + + ++ A++ Q ++ +K+ +
Sbjct: 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSE 152
Query: 354 ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTK 406
++ + + L + + +P P VR SS LG L K
Sbjct: 153 TALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 3e-09
Identities = 67/451 (14%), Positives = 132/451 (29%), Gaps = 118/451 (26%)
Query: 14 GDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDW 73
+ E + + + + ++ + + ++ + + ++ E L L
Sbjct: 190 KNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSK 241
Query: 74 NLRKCSAAALDVLANVFREELL-------PVLL--------------PILKETLFHHDWE 112
C L VL NV + +LL +L HH
Sbjct: 242 PYENC----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 113 IKESGILALGAIAEGCMNGMVPHLNELV-PFLITCLSDKKALVRAITCWTLSRYSHWVVS 171
+ + +L C +P P ++ ++ +R L+ + +W
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRD----GLATWDNW--- 347
Query: 172 QPHDSYLKPLMTEMLGCMNGMVP-----HLNELVPFLITCLSDKKALVRAITCWTLSRYS 226
H + K L T + +N + P + L F I LS
Sbjct: 348 -KHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH-----IPTILLSLI- 395
Query: 227 HWVVSQPHDSYLKPLMTE-HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285
W D + ++ + HK L+ K IS+ P + + +
Sbjct: 396 -WFDVIKSDVMV--VVNKLHKYSLVEKQ-------------PKESTISI--PSIYLELKV 437
Query: 286 LKDEDKDLF-PLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFD 344
+ + L +++ + T +P Y + H+ N ++PE+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSHIGHHLKNIEHPERMT 491
Query: 345 APDKDFMIVALDL--------LSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQS 396
F +V LD A I + + + Y C DP E
Sbjct: 492 L----FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE---- 542
Query: 397 SFALLGDLTKACFSHVHPCISDFMPILGQNL 427
L+ + DF+P + +NL
Sbjct: 543 --RLVNAIL------------DFLPKIEENL 559
Score = 48.3 bits (114), Expect = 7e-06
Identities = 80/524 (15%), Positives = 156/524 (29%), Gaps = 146/524 (27%)
Query: 92 EELLPVLLPILKETLFHHDWEIKESGILA---LGAIAEGCMNGMVPHLNELVPFLITCLS 148
+++L V + D + IL+ + I L L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM------SKDAVSGTLRLFWTLL 72
Query: 149 DK-KALVRAITCWTLSRYSHWVVSQPHDSYLKP-LMTEM-LGCMNGM-----------VP 194
K + +V+ L +++S +P +MT M + + + V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 195 ----------HLNELVPFLITCL-----SDKKALVRAITCWTLSRYS------HWV-VSQ 232
L EL P + S K + C + W+ +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 233 PH--DSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLL--MPPLIQKWNILKD 288
+ ++ L+ L + LL + P + S + + + ++
Sbjct: 192 CNSPETVLEML----QKLL---------------YQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 289 EDKDLF---PLLECL---SSV--ATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNP 340
E + L P CL +V A A A F C L+ T + + + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNL-------SCKILL-TTRFKQVTDFLSA 283
Query: 341 EQFDAPDKDFMIVAL---DLLSGLAEGLDMHIDSL---VSNSNIMHL------------- 381
D + L ++ S L + LD L V +N L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 382 ---LYQCMQDPMPEVRQSSFALLG-DLTKACFSHVHPCISDFMPILGQNLN--PDLISV- 434
D + + +SS +L + F D + + + + L+S+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--------DRLSVFPPSAHIPTILLSLI 395
Query: 435 -CNNATWAIGEISVKL---------GEDMRRYVPMVINQLII-----------IINRPNT 473
+ + + KL ++ +P + +L + I++ N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 474 PKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFR 517
PKT + I Y H + L+NI ++ E+ + FR
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSH----IGHHLKNI-EHPERMTLFR 494
Score = 46.4 bits (109), Expect = 3e-05
Identities = 79/460 (17%), Positives = 140/460 (30%), Gaps = 131/460 (28%)
Query: 4 SAEIDIILLKGDVEED-----EMIPDRDEDIRPRFHKS---------KRSVKAEGENMNM 49
EID I++ D + + E++ +F + +K E +M
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 50 GENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHH 109
E+ D L +D+ + K NV R + L L E L
Sbjct: 108 MT---RMYIEQRDRLYNDNQV----FAK---------YNVSRLQPYLKLRQALLE-LRPA 150
Query: 110 DWEI----KESG--ILALGAIA----EGCMNGMVPHLNELVPFLIT---CLSDK------ 150
+ SG +AL + M+ + F + C S +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEML 202
Query: 151 KALVRAITCWTLSRYSHWVVSQPHD-----SYLKPLMTEMLGCMNGMVPHLNELVPFLIT 205
+ L+ I SR H + + L+ L+ P+ N L L+
Sbjct: 203 QKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSK--------PYENCL---LV- 249
Query: 206 CLSD--KKALVRA--ITCWTL--SRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLA 259
L + A ++C L +R+ V +L T H +L
Sbjct: 250 -LLNVQNAKAWNAFNLSCKILLTTRFKQ-VT-----DFLSAATTTHISL----------- 291
Query: 260 DSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFL---PYCE 316
D L E SLL+ L + L E P LS +A +++ G +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKH 349
Query: 317 PVYRRCVSLIEQTLNQHMANSQNP----EQFDA-----PDKDFMIVALDLL-SGLAEGLD 366
+ ++IE +LN P + FD P + L L+ + +
Sbjct: 350 VNCDKLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 367 MHI-DSLVSNSNI----------MHLLYQCMQDPMPEVRQ 395
M + + L S + + +Y ++ +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Score = 28.7 bits (63), Expect = 7.5
Identities = 38/271 (14%), Positives = 82/271 (30%), Gaps = 57/271 (21%)
Query: 54 GEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLAN-----------VFREELL--PVLLP 100
E + + D+ ++ L ++L+VL VF +LL
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 101 ILKETLFHHDWEIKESGILALGAIAEGCMN-GMVP-HLNELVPFLITCLSDKKALV---- 154
++ W + + + +V E + + + K +
Sbjct: 394 LI--------WFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 155 ----RAITCWTLSR-YSHWVVSQPH-DSY--------LKPL-MTEMLGCMNGMVPHLNEL 199
+ + + + + + P+ D Y LK + E + +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-- 501
Query: 200 VPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLL-ILYDAIGTL 258
FL ++ + T W S + Q Y KP + ++ L +AI
Sbjct: 502 --FL------EQKIRHDSTAWNASGSILNTLQQ-LKFY-KPYICDNDPKYERLVNAILDF 551
Query: 259 ADSVGHHLNKPEYISLLMPPLIQKWNILKDE 289
+ +L +Y LL L+ + + +E
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 52.8 bits (126), Expect = 7e-08
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 29/177 (16%)
Query: 48 NMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF 107
M + E V+ L + + D + + AL+ +A L+ ++ L
Sbjct: 96 QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLS 154
Query: 108 HHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH 167
+ E K + + + A+ E + P L P +I L D +VRA L
Sbjct: 155 SKNREDKLTALNFIEAMGENSFKYVNPFL----PRIINLLHDGDEIVRASAVEALVH--- 207
Query: 168 WVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224
L +N L ++V + L+D +LV +SR
Sbjct: 208 ------------------LATLN---DKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243
Score = 45.5 bits (107), Expect = 2e-05
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 51/230 (22%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN 130
++++R+ A + + + +L L E L W + ++ I + IA+ +
Sbjct: 6 EEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED 65
Query: 131 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN 190
P ++ L + L L + + G M
Sbjct: 66 LYEP----MLKKLFSLLKK-----------------------SEAIPLTQEIAKAFGQMA 98
Query: 191 GMVPHL-NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLL 249
P L ++P L + + L +++ + + ++ + ++L
Sbjct: 99 KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-----IAKANPMLMASIVRDFMSML 153
Query: 250 ILYD---------AIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDED 290
+ I + + N +Y++ +P +I +L D D
Sbjct: 154 SSKNREDKLTALNFIEAMGE------NSFKYVNPFLPRIIN---LLHDGD 194
Score = 40.1 bits (93), Expect = 0.001
Identities = 19/189 (10%), Positives = 60/189 (31%), Gaps = 18/189 (9%)
Query: 344 DAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD 403
+ +A+ + S++ +L+ + + + + L +
Sbjct: 80 KSEAIPLTQEIAKAFGQMAKEKPELVKSMIP------VLFANYRIGDEKTKINVSYALEE 133
Query: 404 LTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQ 463
+ KA + + DFM +L N + A I + + + ++P +
Sbjct: 134 IAKANPMLMASIVRDFMSMLSSK-NREDKLT---ALNFIEAMGENSFKYVNPFLP----R 185
Query: 464 LIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEE--KDSAFRGMCA 521
+I +++ + + + + + L + + L + D + G+
Sbjct: 186 IINLLHDGD--EIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243
Query: 522 MITVNPGGV 530
++ +
Sbjct: 244 LLLLEGHSS 252
Score = 38.1 bits (88), Expect = 0.005
Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 27/223 (12%)
Query: 316 EPVYRRCVSLIEQTLNQHMANSQNPEQFDAP------DKDFMIV--ALDLLSGLAEGLDM 367
E R ++ E L + + ++ E D + +V A+ ++ +A+ +
Sbjct: 7 EFDIREALANGEH-LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED 65
Query: 368 HIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNL 427
+ ++ L + + Q G + K V I P+L N
Sbjct: 66 LYEPMLKK-----LFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI----PVLFANY 116
Query: 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGR 487
N ++A+ EI+ M V ++ L T L I
Sbjct: 117 RIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSML--SSKNREDKLTALN----FIEA 170
Query: 488 LGYVCPHDVAPLCSSLRNIRDNEEKD---SAFRGMCAMITVNP 527
+G V P + N+ + ++ SA + + T+N
Sbjct: 171 MGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 68/431 (15%), Positives = 130/431 (30%), Gaps = 116/431 (26%)
Query: 158 TCWTLSRYSHWVVSQPHDSYLK--PLMTEMLGCMN--GMVPHLNELVPFL--ITCLSDKK 211
+ S ++ SQ + + K P TE + L + FL ++ L +
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL--VGKFLGYVSSLVEPS 75
Query: 212 ALVRAITCWTL------SRY-----SHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLAD 260
+ + L + Y H + ++ L+ + + A
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA-- 133
Query: 261 SVGHHLNKPEYISLLMP-------PLI-----QKWNILK--DEDKDLF----PLLE-CLS 301
+K S L L+ Q N +E +DL+ L+ +
Sbjct: 134 --KRPFDKKSN-SALFRAVGEGNAQLVAIFGGQG-NTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 302 SVATALQ--AGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMI---VALD 356
A L E V+ + ++ I + L +NP + PDKD+++ ++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLN-ILEWL-------ENPS--NTPDKDYLLSIPISCP 239
Query: 357 LLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQ---DPMPEVRQSSFALLGD----LTKACF 409
L+ G+ L H + P E+R G +T
Sbjct: 240 LI-GVI--------QLA------HYVVTAKLLGFTP-GELRSYLKGATGHSQGLVTAVAI 283
Query: 410 SHV------HPCISDFMPIL------GQNLNPDLISVCNNATWAIGEISVKLGEDMRRYV 457
+ + + +L P+ + +I E S++ E +
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-----SLPPSILEDSLENNEGVPS-- 336
Query: 458 PM--VIN----QLIIIINRPNTPKTLLENTAITI----GRLGYVC---PHDVAPLCSSLR 504
PM + N Q+ +N+ N L + I G V P + L +LR
Sbjct: 337 PMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 505 NIRDNEEKDSA 515
+ D +
Sbjct: 395 KAKAPSGLDQS 405
Score = 49.3 bits (117), Expect = 4e-06
Identities = 68/390 (17%), Positives = 124/390 (31%), Gaps = 136/390 (34%)
Query: 134 PHLNELVPFLITCLSDKKALVRAITCWTLSRYSH------WV---VSQPHDSYLK----- 179
+ +L+ F LS+ L+R ++ W+ + P YL
Sbjct: 182 VLVGDLIKFSAETLSE---LIRTTLDAE-KVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 180 -PLMT-------------------EMLGCMNGMVPHLNELVPFLITCLSD-----KKALV 214
PL+ E+ + G H LV + +D ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 215 RAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISL 274
+AIT ++ + +++Y P + +L L DS+ ++ P
Sbjct: 298 KAIT------VLFFIGVRCYEAY--P----NTSL-----PPSILEDSLENNEGVPSP--- 337
Query: 275 LMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHM 334
M L +I +L E + + LP + V +SL+
Sbjct: 338 -M--L----SI-----SNL--TQEQVQDYVNKTNS-HLPAGKQVE---ISLV-------- 371
Query: 335 ANSQNPEQFDAPDKDFMIVALDLLSGLAE---GLDMHIDSLVSNSNIMHLLYQCMQDPMP 391
N + V +SG + GL++ + + S L Q + P
Sbjct: 372 -NG--AKNL---------V----VSGPPQSLYGLNLTLRKAKAPSG----LDQS-RIPFS 410
Query: 392 EVRQSSFALLGDLTKACF----SHVHPCISDFMPILGQNLNPDLISVCNNATWAIGE--I 445
E R+ F+ F S H S + +N DL+ NN ++ + I
Sbjct: 411 E-RKLKFSN-------RFLPVASPFH---SHLLVPASDLINKDLVK--NNVSFNAKDIQI 457
Query: 446 SVKL---GEDMRRYVPMVINQLI-IIINRP 471
V G D+R + +++ II P
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 41.2 bits (96), Expect = 0.001
Identities = 38/238 (15%), Positives = 63/238 (26%), Gaps = 85/238 (35%)
Query: 343 FDAPDKDFM---------IV-----ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQD 388
++ D F IV L + G +G + N ++++ + D
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-------ENYSAMIFETIVD 1698
Query: 389 PMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPD--LISVCNNATW----AI 442
+ + + T F L +AT A+
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRS-----------------EKGLL-----SATQFTQPAL 1736
Query: 443 GEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGR-LG-Y---VCPHDVA 497
+ ED++ K L+ A G LG Y DV
Sbjct: 1737 TLMEKAAFEDLKS-------------------KGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 498 PLCSSLR--NIR-----DNEEKDSAFRGMCAMITVNPGGVVQEF-----IFFCDAVAS 543
+ S + R +D R MI +NPG V F + + V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Score = 35.4 bits (81), Expect = 0.066
Identities = 68/393 (17%), Positives = 108/393 (27%), Gaps = 163/393 (41%)
Query: 238 LKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKW---NILKD------ 288
+PL H G+L E+ LL+P + + L++
Sbjct: 6 TRPLTLSH----------GSL-----------EH-VLLVPTAS--FFIASQLQEQFNKIL 41
Query: 289 -EDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPD 347
E + F + ++ A L FL Y SL+E QFD
Sbjct: 42 PEPTEGFAADDEPTTPAE-LVGKFLGYVS-------SLVEP---------SKVGQFD--- 81
Query: 348 KDFMIVAL-----DLLSG-----LAEGLDMHIDSLVSNSNIMHLLY----QCMQDPMPEV 393
+ + L L G LA L D+ + + + Y + P +
Sbjct: 82 -QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 394 RQSSFALLGDLTKACFSHVHPCISDFMPIL-GQNLNPDLISVCNNATWAIGEISVKLGED 452
S AL F V + + I GQ G E
Sbjct: 141 SNS--AL--------FRAVGEGNAQLVAIFGGQ-----------------GNTDDYFEE- 172
Query: 453 MR----RYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIR- 507
+R Y +V L++ +A T+ L D + + NI
Sbjct: 173 LRDLYQTYHVLV--------------GDLIKFSAETLSELIR-TTLDAEKVFTQGLNILE 217
Query: 508 --DNEEK--DSAFRGMC-AMITVNPG-GVVQ--EFIFFCDAVASWSTPKEDLKEMFHKIL 559
+N D + + I+ P GV+Q ++ K+L
Sbjct: 218 WLENPSNTPDKDY--LLSIPISC-PLIGVIQLAHYVVTA------------------KLL 256
Query: 560 HGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
GF P +LR L G
Sbjct: 257 -GFT---------------PGELRSYLKGATGH 273
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 48.3 bits (115), Expect = 4e-06
Identities = 58/410 (14%), Positives = 132/410 (32%), Gaps = 61/410 (14%)
Query: 98 LLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL---NELVPFLITCL--SDKKA 152
+ + E +F E + S + N + + +V + L +
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 153 LVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKA 212
L W L+ + +S ++ + VP I LS +
Sbjct: 81 LQFESA-WVLTNIAS------GNSLQTRIVIQ------------AGAVPIFIELLSSEFE 121
Query: 213 LVRAITCWTLS-------RYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHH 265
V+ W L +V+ L L ++ L + +A+ L++
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 266 LNKPEY--ISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCV 323
PE+ +S + L +L D D+ L+ AL +L + V
Sbjct: 182 SPPPEFAKVSPCLNVLSW---LLFVSDTDV------LADACWAL--SYLSDGPNDKIQAV 230
Query: 324 --SLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHL 381
+ + + L + + + D + AL + + G D+ ++ N + +
Sbjct: 231 IDAGVCRRLVELLMH---------NDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQS 280
Query: 382 LYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATW 440
L + P +++ + + ++T + + I ++ P L L A W
Sbjct: 281 LLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340
Query: 441 AIGEISVKLGEDMRRYV--PMVINQLIIIINRPNTPKTLLENTAITIGRL 488
AI + + +Y+ I L ++ ++ +++ + +
Sbjct: 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS--KIVQVALNGLENI 388
Score = 48.0 bits (114), Expect = 6e-06
Identities = 61/406 (15%), Positives = 113/406 (27%), Gaps = 92/406 (22%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN-- 130
W L ++ V + +P+ + +L +++E + ALG IA
Sbjct: 87 WVLTNIASGNSLQTRIVIQAGAVPIFIELLS----SEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 131 ------GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
++P L +L + + W LS P + + P
Sbjct: 143 DYVLDCNILPPLLQL------FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP---- 192
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
+ L L V A CW L SYL +
Sbjct: 193 --------------CLNVLSWLLFVSDTDVLADACWAL-------------SYLSDGPND 225
Query: 245 HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVA 304
+I L + + H ++ P L NI+ +D
Sbjct: 226 KIQAVIDAGVCRRLVELLMH-----NDYKVVSPALRAVGNIVTGDD----------IQTQ 270
Query: 305 TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEG 364
L L + L+ +P + A +S + G
Sbjct: 271 VILNCSALQS-------LLHLL-----------------SSPKESIKKEACWTISNITAG 306
Query: 365 LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH--VHPCISDFMPI 422
I +++ ++NI L +Q R+ + + + T + + +
Sbjct: 307 NRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP 365
Query: 423 LGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468
L L + A + I ++LGE + IN +I
Sbjct: 366 LCDLLTVMDSKIVQVALNGLENI-LRLGEQEAKRNGTGINPYCALI 410
Score = 41.8 bits (98), Expect = 5e-04
Identities = 49/276 (17%), Positives = 93/276 (33%), Gaps = 51/276 (18%)
Query: 65 DDDSSLSD--WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALG 122
D L+D W L S D + V + L+ +L H+D+++ + A+G
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM----HNDYKVVSPALRAVG 259
Query: 123 AIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 181
I G LN + L+ LS K ++ CWT+S + + +
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN----ITA--GNRAQIQT 313
Query: 182 MTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 241
+ + + P LI+ L + R W ++ + +
Sbjct: 314 VIDA------------NIFPALISILQTAEFRTRKEAAWAITNATSGGSA---------- 351
Query: 242 MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLS 301
E L+ I L D + +K ++ L NIL+ +++ ++
Sbjct: 352 --EQIKYLVELGCIKPLCDLLTVMDSK-----IVQVALNGLENILRLGEQEAKRNGTGIN 404
Query: 302 SVATAL-QAGFLPYCEP--------VYRRCVSLIEQ 328
+ +A L E +Y++ LIE
Sbjct: 405 PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 47.5 bits (113), Expect = 4e-06
Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 38/154 (24%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN 130
+R + + P ++ + T F ++ + A+ I +
Sbjct: 103 KSACVRATAIESTAQRCKK-NPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157
Query: 131 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN 190
+P LI L D VR + ++ +
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKY----------------------- 188
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224
+++ + L DK VR LS
Sbjct: 189 ----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218
Score = 46.3 bits (110), Expect = 1e-05
Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 52/242 (21%)
Query: 70 LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCM 129
+S+ ++ ++ L N ++ L +L H+ + S L
Sbjct: 1 MSNTYQKRKASKEYG-LYNQCKKLNDDELFRLLD----DHNSLKRISSARVLQLRGG--- 52
Query: 130 NGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM 189
+ V I SDK + R I + L + + D+ L L
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALNDK 103
Query: 190 NGMV----------------PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 233
+ V + ++V DK VR T + +S
Sbjct: 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI-------N 156
Query: 234 HDSYLKPL--MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDK 291
+ + L + + N + A + + + + + +L+D+++
Sbjct: 157 DKATIPLLINLLKDPNGDVRNWAAFAININ---KYDNSDIRDCFVE-------MLQDKNE 206
Query: 292 DL 293
++
Sbjct: 207 EV 208
Score = 44.0 bits (104), Expect = 6e-05
Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 24 DRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAAL 83
D+ +R ++++ + ++ E+ D N+R+ A
Sbjct: 102 DKSACVR------ATAIESTAQRCKKNPIYSPKIVEQSQITAFDK---STNVRR---ATA 149
Query: 84 DVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFL 143
++ + + +P+L+ +LK+ + +++ A+ +++
Sbjct: 150 FAISVINDKATIPLLINLLKDP----NGDVRNWAAFAININKYD--------NSDIRDCF 197
Query: 144 ITCLSDKKALVRAITCWTLSR 164
+ L DK VR LS
Sbjct: 198 VEMLQDKNEEVRIEAIIGLSY 218
Score = 32.5 bits (74), Expect = 0.32
Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN 130
+ ++R +A A+ + ++ + +L+ + E++ I+ L +
Sbjct: 171 PNGDVRNWAAFAI-NINKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKD---- 221
Query: 131 GMVPHLNELVPFLITCLSDKKALVRAI 157
++ L L I
Sbjct: 222 ------KRVLSVLCDELKKNTVYDDII 242
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 46.9 bits (111), Expect = 1e-05
Identities = 49/288 (17%), Positives = 93/288 (32%), Gaps = 54/288 (18%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGM 132
W + S + + V + L+ +L H ++ + A+G I G
Sbjct: 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLS----HESTLVQTPALRAVGNIVTGNDLQT 334
Query: 133 VPHLNE-LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNG 191
+N ++P L LS K ++ CWT+S ++ + +
Sbjct: 335 QVVINAGVLPALRLLLSSPKENIKKEACWTISN------ITAGNTEQIQAVID------- 381
Query: 192 MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLIL 251
L+P L+ L + + CW +S S + +P + L+
Sbjct: 382 -----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP----------DIIRYLVS 426
Query: 252 YDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATAL-QAG 310
I L D L + ++ L NILK + D ++ A + +AG
Sbjct: 427 QGCIKPLCD-----LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481
Query: 311 FLPYCE--------PVYRRCVSLIEQ-------TLNQHMANSQNPEQF 343
+ +Y + +IE +++ MA F
Sbjct: 482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTF 529
Score = 45.8 bits (108), Expect = 3e-05
Identities = 59/407 (14%), Positives = 118/407 (28%), Gaps = 81/407 (19%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIA- 125
L+ +A AL +A+ + V+ +P+ + L+ E+KE I ALG +A
Sbjct: 143 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202
Query: 126 EGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEM 185
+ + ++ + K + WTLS
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR------GKKPQPDWSVV- 255
Query: 186 LGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEH 245
++ +P L + CW +S S E
Sbjct: 256 -----------SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------EA 291
Query: 246 KNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVAT 305
+I L + + H E + P L NI+ D
Sbjct: 292 IQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGNIVTGND----------LQTQV 336
Query: 306 ALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGL 365
+ AG LP + L + E A +S + G
Sbjct: 337 VINAGVLPAL------------RLLLSSPKENIKKE------------ACWTISNITAGN 372
Query: 366 DMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSH----VHPCISDFMP 421
I +++ ++N++ L + ++ + ++ + + + + + +
Sbjct: 373 TEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 422 ILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468
L L + A+ I +K+GE + + IN+ I
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENI-LKMGEADKEARGLNINENADFI 477
Score = 40.0 bits (93), Expect = 0.002
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 333 HMANSQNPE-QFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP 391
NS + + Q A + L+ ID ++ + L+ ++
Sbjct: 94 QQLNSDDMQEQLSA--------TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145
Query: 392 EVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLG 450
++ + L ++ + + +D +P+ Q L + V A WA+G ++
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-S 204
Query: 451 EDMRRYVPM--VINQLIIIINRPNTPKTLLENTAITIGRL 488
D R YV + ++ + N +L+ T+ L
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNL 242
Score = 33.8 bits (77), Expect = 0.15
Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 15/180 (8%)
Query: 326 IEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQC 385
+ L + M +Q + A L+ +A G +V +++ + L Q
Sbjct: 131 VVPRLVEFMRENQPEML--------QLEAAWALTNIASGTSAQTKVVV-DADAVPLFIQL 181
Query: 386 MQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGE 444
+ EV++ + LG++ + + + M + N + S+ ATW +
Sbjct: 182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241
Query: 445 ISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSS 502
+ + + + + + L +I +T L + I L + +
Sbjct: 242 LC-RGKKPQPDWSVVSQALPTLAKLIYSMDT--ETLVDACWAISYLSDGPQEAIQAVIDV 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 44.2 bits (105), Expect = 3e-05
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 26/151 (17%)
Query: 81 AALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELV 140
+ E + + + L+ + ++ + ALG I + V
Sbjct: 2 RGSHHHHHHTDPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD----------ERAV 47
Query: 141 PFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-------HDSYLKPLMTEMLGCMNGMV 193
LI L D+ A VR L + +P D +++ LG +
Sbjct: 48 EPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-- 105
Query: 194 PHLNELVPFLITCLSDKKALVRAITCWTLSR 224
V LI L D+ VR + L
Sbjct: 106 ---ERAVEPLIKALKDEDWFVRIAAAFALGE 133
Score = 40.4 bits (95), Expect = 6e-04
Identities = 35/161 (21%), Positives = 50/161 (31%), Gaps = 50/161 (31%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ D +R+ AA D L + E + L+ LK D +++S +ALG
Sbjct: 54 LKDE----DAWVRR---AAADALGQIGDERAVEPLIKALK----DEDGWVRQSAAVALGQ 102
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT 183
I + V LI L D+ VR + L
Sbjct: 103 IGD----------ERAVEPLIKALKDEDWFVRIAAAFALGE------------------- 133
Query: 184 EMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224
+G V LI L D+ VR L
Sbjct: 134 --IGD--------ERAVEPLIKALKDEDGWVRQSAADALGE 164
Score = 35.7 bits (83), Expect = 0.022
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ DW +R AA L + E + L+ LK D +++S ALG
Sbjct: 116 LKDE----DWFVR---IAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGE 164
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164
I + + R + L
Sbjct: 165 IGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 195
Score = 29.2 bits (66), Expect = 2.6
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ D +R+ +A D L + E + + + + ++ + L
Sbjct: 147 LKDE----DGWVRQ---SAADALGEIGGERVRAAMEKLAE----TGTGFARKVAVNYLET 195
Query: 124 IAE 126
Sbjct: 196 HKS 198
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 44.2 bits (105), Expect = 3e-05
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAI 157
LP + + L D + +S + L IA G + ++ +P L+ LS +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 158 TCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAI 217
W LS + + + + +P L+ LS +
Sbjct: 74 ALWALSNIAS------GGNEQIQAVID------------AGALPALVQLLSSPNEQILQE 115
Query: 218 TCWTLS 223
W LS
Sbjct: 116 ALWALS 121
Score = 39.2 bits (92), Expect = 0.002
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 31/162 (19%)
Query: 71 SDWNLRKCSAAALDVLAN--------VFREELLPVLLPILKETLFHHDWEIKESGILALG 122
D + + L +A+ V LP L+ +L + +I + + AL
Sbjct: 24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALS 79
Query: 123 AIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 181
IA G + ++ +P L+ LS + W LS + Q
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--------- 130
Query: 182 MTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLS 223
+ + +P L+ LS + W LS
Sbjct: 131 -IQAVIDAGA--------LPALVQLLSSPNEQILQEALWALS 163
Score = 32.2 bits (74), Expect = 0.28
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIAE 126
+ + + + AL +A+ E++ V+ LP L + L + +I + + AL IA
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167
Query: 127 GCMNG--MVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166
G V + L S + ++ L +
Sbjct: 168 GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 29.1 bits (66), Expect = 3.1
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405
PD+ + AL LS +A G + I +++ ++ + L Q + P ++ Q + L ++
Sbjct: 24 PDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIA 82
Query: 406 KACFSHVHPCI-SDFMPILGQNLNPDLISVCNNATWAIGEISV 447
+ I + +P L Q L+ + A WA+ I+
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 45.8 bits (108), Expect = 4e-05
Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 38/215 (17%)
Query: 76 RKCSAAALDVLANVFREELLPVLLPILKETLFHHD-WEIKESGILALGAIAEGCMNGMVP 134
+ ++ L + N + LLP L + + W+ K + + A A+ + + +
Sbjct: 112 QSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171
Query: 135 HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVP 194
+ EL+P L + D K V+A MT+ ++
Sbjct: 172 RMPELIPVLSETMWDTKKEVKAAATAA--------------------MTKATETVDN--K 209
Query: 195 HLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLM----------TE 244
+ +P LI C++D + + + + V S + PL+ +
Sbjct: 210 DIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTP-ATLSIMVPLLSRGLNERETGIK 268
Query: 245 HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPL 279
K+ +I I + V ++ L+P L
Sbjct: 269 RKSAVI----IDNMCKLVEDPQVIAPFLGKLLPGL 299
Score = 37.7 bits (87), Expect = 0.013
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 114 KESGILALGAIAEGCMNGMV-----PHLNELVPFLITCLSDKKALVRAITCWTL----SR 164
K++ A+ A+A + P++ +LVP + T +K ++++ TL +
Sbjct: 66 KKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA 125
Query: 165 YSHWVVSQPHDSYLKPLMT-----------EMLGCMNGMVPH-----LNELVPFLITCLS 208
+ + ++ M + EL+P L +
Sbjct: 126 VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW 185
Query: 209 DKKALVRAITCWTLSRY 225
D K V+A +++
Sbjct: 186 DTKKEVKAAATAAMTKA 202
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 42.7 bits (101), Expect = 1e-04
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGM 132
W+ + AA + A+ E + + + L+ + ++ + ALG I +
Sbjct: 2 WSHPQFEKAAAPLRAD---PEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD------ 48
Query: 133 VPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP-------HDSYLKPLMTEM 185
V LI L D+ A VR L + +P D +++
Sbjct: 49 ----ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 104
Query: 186 LGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 224
LG + V LI L D+ VR + L
Sbjct: 105 LGQIGD-----ERAVEPLIKALKDEDWFVRIAAAFALGE 138
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 21/101 (20%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ D +R+ +A L + E + L+ LK DW ++ + ALG
Sbjct: 90 LKDE----DGWVRQ---SAAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGE 138
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164
I + V LI L D+ VR L
Sbjct: 139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGE 169
Score = 36.6 bits (85), Expect = 0.012
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ DW +R AA L + E + L+ LK D +++S ALG
Sbjct: 121 LKDE----DWFVR---IAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGE 169
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164
I + + R + L
Sbjct: 170 IGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 200
Score = 30.0 bits (68), Expect = 1.5
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGA 123
L D+ D +R+ +A D L + E + + + + ++ + L
Sbjct: 152 LKDE----DGWVRQ---SAADALGEIGGERVRAAMEKLAE----TGTGFARKVAVNYLET 200
Query: 124 I 124
Sbjct: 201 H 201
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 29/137 (21%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAIT 158
L + + ++ AL + + E L+ LS++ +R
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAA 62
Query: 159 CWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPH-----LNEL-----VPFLITCLS 208
W + + D + ++L +G V L ++ +
Sbjct: 63 AWIIGNF--------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAE 114
Query: 209 DKKALVRAITCWTLSRY 225
R + L +
Sbjct: 115 TGTGFARKVAVNYLETH 131
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 40.7 bits (96), Expect = 7e-04
Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 37/204 (18%)
Query: 71 SDWNLRKCSAAALDVLAN--------VFREELLPVLLPILKETLFHHDWEIKESGILALG 122
D + + + + V LP L+ +L + +I + + AL
Sbjct: 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALS 79
Query: 123 AIAEGC-MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL 181
IA G +P L+ LS + W LS + +
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQIQA 133
Query: 182 MTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSY---- 237
+ + +P L+ LS + W LS + Q
Sbjct: 134 VID------------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 238 LKPLMT--EHKNLLILYDAIGTLA 259
L L+ N IL +A+ L+
Sbjct: 182 LPALVQLLSSPNEQILQEALWALS 205
Score = 40.4 bits (95), Expect = 8e-04
Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 59/262 (22%)
Query: 99 LPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAI 157
LP + + L D + + S I + ++ +P L+ LS +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 158 TCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAI 217
W LS + + + + +P L+ LS +
Sbjct: 74 ALWALSNIAS------GGNEQIQAVID------------AGALPALVQLLSSPNEQILQE 115
Query: 218 TCWTLSRYSHWVVSQPHDSYLK----------PLMT--EHKNLLILYDAIGTLADSVGHH 265
W LS + + L+ N IL +A+ L++
Sbjct: 116 ALWALSNIAS------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169
Query: 266 LNKPEYI--SLLMPPLIQKWNILKDEDKDLF-PLLECLSSVATA--------LQAGFLPY 314
+ + + + +P L+Q +L ++ + L LS++A+ +AG L
Sbjct: 170 NEQIQAVIDAGALPALVQ---LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 226
Query: 315 CEP--------VYRRCVSLIEQ 328
E + + +E+
Sbjct: 227 LEQLQSHENEKIQKEAQEALEK 248
Score = 31.1 bits (71), Expect = 0.86
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIAE 126
+ + + + AL +A+ E++ V+ LP L + L + +I + + AL IA
Sbjct: 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 127 GCMNG--MVPHLNELVPFLITCLSDKKALVRAITCWTLSRY-SH 167
G V + L S + ++ L + SH
Sbjct: 210 GGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 40.4 bits (94), Expect = 9e-04
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 42/200 (21%)
Query: 62 DDLDDDSSLSDWNLRKCSAAALDVLANVFREEL---------LPVLLPILKETLFHH-DW 111
D + + S W R AL+ + + LL I + +
Sbjct: 19 KDFQERITSSKWKDRV---EALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI 75
Query: 112 EIKESGILALGAIAEGCMNGMV--PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWV 169
+ ++ I + +++ + L+ +KK V L +
Sbjct: 76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135
Query: 170 VSQPHDSYLKPLMTEMLGCMNGMVP---------------------------HLNELVPF 202
+ ++ ++L M P +E+VP
Sbjct: 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPI 195
Query: 203 LITCLSDKKALVRAITCWTL 222
+I ++D + +R I +
Sbjct: 196 VIQIVNDTQPAIRTIGFESF 215
Score = 37.0 bits (85), Expect = 0.012
Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 25/176 (14%)
Query: 238 LKPLMTEHKNLLILYDA---IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLF 294
++ + N+ + A + + D + +Y+SL+ PL+ + K++
Sbjct: 65 YGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDR---TKEKKP--- 118
Query: 295 PLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMA---NSQNPEQFDAPDKDFM 351
SV A++ L C+ S + + + + + P+ + F
Sbjct: 119 -------SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN 171
Query: 352 IVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKA 407
+ G + D +V ++ Q + D P +R F L K
Sbjct: 172 ASMKEEKDGYSTLQRYLKDEVVP------IVIQIVNDTQPAIRTIGFESFAILIKI 221
Score = 28.9 bits (64), Expect = 4.9
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 7/133 (5%)
Query: 347 DKDFMIV--ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDL 404
D + V A + + + L S S + L ++ P V ++ L +
Sbjct: 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTI 131
Query: 405 TKACFSHVHPC-ISDFMPILGQNL---NPDL-ISVCNNATWAIGEISVKLGEDMRRYVPM 459
K D + + +++ P + + ++ E R
Sbjct: 132 CKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDE 191
Query: 460 VINQLIIIINRPN 472
V+ +I I+N
Sbjct: 192 VVPIVIQIVNDTQ 204
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 28/153 (18%)
Query: 80 AAALDVLANVFRE-------ELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGM 132
L+N+ R + + +LP L L H+D E+ A+ + +G N
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NER 266
Query: 133 VPHLNE--LVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMN 190
+ + + +VP L+ L + + + + +
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT------GTDEQTQKVID------ 314
Query: 191 GMVPHLNELVPFLITCLSDKKALVRAITCWTLS 223
+ + L++ K ++ WT+S
Sbjct: 315 ------AGALAVFPSLLTNPKTNIQKEATWTMS 341
Score = 40.8 bits (95), Expect = 0.001
Identities = 62/398 (15%), Positives = 112/398 (28%), Gaps = 105/398 (26%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIAE 126
++ SA AL +A+ E+ V+ +P L I E + ALG IA
Sbjct: 113 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172
Query: 127 GC--------MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 178
+G + L L + LS WTLS P +
Sbjct: 173 DGSAFRDLVIKHGAIDPLLAL--LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 230
Query: 179 KPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYL 238
+ ++P L+ L V A +CW +S
Sbjct: 231 EQ------------------ILPTLVRLLHHNDPEVLADSCWAISY-------------- 258
Query: 239 KPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLL 297
+T+ N + I + +P L++ +L + + P L
Sbjct: 259 ---LTDGPN-----ERIEMVVKKGV------------VPQLVK---LLGATELPIVTPAL 295
Query: 298 ECLSSVATA--------LQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKD 349
+ ++ T + AG L SL+ P +
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALAV-------FPSLLTN-----------------PKTN 331
Query: 350 FMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409
A +S + G I +V N ++ L + + ++ + + + T
Sbjct: 332 IQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390
Query: 410 SHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEI 445
+ + L L+ + AI I
Sbjct: 391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
Score = 37.7 bits (87), Expect = 0.011
Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 15/193 (7%)
Query: 320 RRCVSLIEQTLNQHMANSQNPEQFDA----------PDKDFMIVALDLLSGLAE-GLDMH 368
+ + S + + + + A L
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 369 IDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI-SDFMPILGQNL 427
ID+++ I + + ++ S L ++ + +P L
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTLLENTAITI 485
+ A WA+G I+ G R V I+ L+ ++ P+
Sbjct: 153 ASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211
Query: 486 GRLGYVCPHDVAP 498
L +C +
Sbjct: 212 WTLSNLCRNKNPA 224
Score = 33.1 bits (75), Expect = 0.29
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 15/182 (8%)
Query: 354 ALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVH 413
LS L + L + I+ L + + PEV S + LT +
Sbjct: 210 LTWTLSNLCRNKN-PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 414 PCI-SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINR 470
+ +P L + L + + A AIG I V ++ + V + ++
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNI-VTGTDEQTQKVIDAGALAVFPSLLTN 327
Query: 471 PNTPKTLLENTAITIGRLG--------YVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAM 522
P + + T+ + V H + P + + D + + A +
Sbjct: 328 PK--TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 523 IT 524
+
Sbjct: 386 TS 387
Score = 31.5 bits (71), Expect = 0.91
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFA--LLGD 403
P A+ L +A D ++ + I LL + P + L
Sbjct: 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL-ALLAVPDLSTLACGYLRNLTWT 213
Query: 404 LTKACFSHVHP----CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM 459
L+ C + + +P L + L+ + V ++ WAI ++ E + M
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEM 269
Query: 460 VIN-----QLIIIINRPNTPKTLLENTAITIGRL 488
V+ QL+ ++ P ++ IG +
Sbjct: 270 VVKKGVVPQLVKLLGATELP--IVTPALRAIGNI 301
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 40.5 bits (95), Expect = 0.001
Identities = 59/437 (13%), Positives = 129/437 (29%), Gaps = 60/437 (13%)
Query: 68 SSLSDWNLRKCSAAALDVLAN-------VFREELLPVLLPILKETLFHHDWEIKESGILA 120
+ +D +C+A L L++ +F+ +P L+ +L + I
Sbjct: 69 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITT 124
Query: 121 LGAIAEGC-MNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLK 179
L + M L + ++ L+ AIT L ++ + K
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY------GNQESK 178
Query: 180 PLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP---HDS 236
++ G L ++ + + T L S ++P
Sbjct: 179 LIILAS-----GGPQALVNIM------RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
Query: 237 YLKPL--MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLF 294
++ L + ++ + + TL ++ K E + L+ L+Q +L +D ++
Sbjct: 228 GMQALGLHLTDPSQRLVQNCLWTLR-NLSDAATKQEGMEGLLGTLVQ---LLGSDDINV- 282
Query: 295 PLLECLSSVATALQAGFLPYCEPVYRRCVS---LIEQTLNQHMANSQNPEQFDAPDKDFM 351
++ A L L + V IE + + + +
Sbjct: 283 -----VTCAAGILSN--LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP------ 329
Query: 352 IVALDLLSGLAEGLDMH--IDSLVSNSNIMHLLYQCMQDPMPEVRQ-SSFALLGDLTKAC 408
A+ L L + V + ++ + + P ++ L+ +L
Sbjct: 330 --AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 409 FSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIII 468
+H +P L Q L + + G M V L I+
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 469 NRPNTPKTLLENTAITI 485
+ + I +
Sbjct: 448 RDVHNRIVIRGLNTIPL 464
Score = 30.5 bits (69), Expect = 1.9
Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 17/179 (9%)
Query: 344 DAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD 403
+ + F+ + D L LA G ++++ L+ ++ ++ +L
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212
Query: 404 LTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVI 461
L + S P I + M LG +L + N W + +S + + ++
Sbjct: 213 L--SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLL 268
Query: 462 NQLIIIINRPNTPKTLLENTAITIGRLGYVCPHD---------VAPLCSSLRNIRDNEE 511
L+ ++ + ++ A + L + + L ++ D E+
Sbjct: 269 GTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Score = 30.1 bits (68), Expect = 2.5
Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 36/221 (16%)
Query: 277 PPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIE--QTLNQHM 334
P L + +L DED+ + ++ A + L E + + + + M
Sbjct: 20 PELTK---LLNDEDQVV------VNKAAVMV--HQLSKKEASRHAIMRSPQMVSAIVRTM 68
Query: 335 ANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVR 394
N+ + E L LS EGL + S + L + + P+ V
Sbjct: 69 QNTNDVET-----ARCTAGTLHNLSHHREGLL-----AIFKSGGIPALVKMLGSPVDSVL 118
Query: 395 QSSFALLGDLTKACFSHVHP-CISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDM 453
+ L +L ++ + + LN + T + ++ ++
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQES 177
Query: 454 RRYV------PMVINQLIIIINRPNTPKTLLENTAITIGRL 488
+ + ++N + R T + LL T+ + L
Sbjct: 178 KLIILASGGPQALVNIM-----RTYTYEKLLWTTSRVLKVL 213
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 39.2 bits (91), Expect = 0.004
Identities = 55/429 (12%), Positives = 125/429 (29%), Gaps = 80/429 (18%)
Query: 68 SSLSDWNLRKCSAAALDVLAN-------VFREELLPVLLPILKETLFHHDWEIKESGILA 120
+ +D +C++ L L++ +F+ +P L+ +L + I
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----SPVDSVLFHAITT 257
Query: 121 LGAIAEGCMN--------GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 172
L + G + + L L+ AIT L ++
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVAL-------LNKTNVKFLAITTDCLQILAY----- 305
Query: 173 PHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 232
+ K ++ G L+ + T + V+S
Sbjct: 306 -GNQESKLIILASGG------------PQALVNIMRTYTYEKLLWTTSRVL----KVLSV 348
Query: 233 PHDSY--------LKPL--MTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQK 282
+ ++ L + ++ + + TL + + + L+ L+Q
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLVQ- 406
Query: 283 WNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVS---LIEQTLNQHMANSQN 339
+L +D ++ ++ A L L + V IE + +
Sbjct: 407 --LLGSDDINV------VTCAAGILSN--LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456
Query: 340 PE-QFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSF 398
+ A I AL L+ + +M +++ + + ++ + +++
Sbjct: 457 EDITEPA------ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 399 ALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458
L+ +L +H +P L Q L + + G M V
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 459 MVINQLIII 467
L I+
Sbjct: 571 ACTGALHIL 579
Score = 34.6 bits (79), Expect = 0.11
Identities = 64/472 (13%), Positives = 136/472 (28%), Gaps = 69/472 (14%)
Query: 71 SDWNLRKCSAAALDVLAN--------VFREELLPVLLPILKETLFHHDWEIKESGILALG 122
++ + L +LA + L+ I++ + ++ + L
Sbjct: 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTSRVLK 344
Query: 123 AIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLM 182
++ N + L L+D + WTL S
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--------------- 389
Query: 183 TEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS------HWVVSQPH-- 234
+ L+ L+ L V LS + +V Q
Sbjct: 390 ------AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443
Query: 235 DSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLL-----MPPLIQKWNILKDE 289
++ ++ ++ I AI L H + + + +P ++ +L
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV---KLLHPP 500
Query: 290 DKD---------LFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNP 340
+ L C ++ A + G +P + R ++ M +Q
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR--RTSMGGTQQQ 558
Query: 341 EQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFAL 400
++ + L LA D+H ++ N + L Q + P+ +++ + +
Sbjct: 559 FVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616
Query: 401 LGDLTKACFSHVHPCISD--FMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458
L +L A I L + L+ V A + +S +D ++
Sbjct: 617 LCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK--- 671
Query: 459 MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNE 510
+ +L + R P T E + + P S R+
Sbjct: 672 RLSVELTSSLFRTE-PMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGG 722
Score = 32.7 bits (74), Expect = 0.43
Identities = 48/333 (14%), Positives = 102/333 (30%), Gaps = 47/333 (14%)
Query: 200 VPFLITCLSDKKALVRAITCWTLSRYSH-------WVVSQPHDSYLKPLMTEHKNLLILY 252
+P L L+D+ +V + + S + S S + M ++
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 253 DAIGTLADSVGHHLNKPEYISL-LMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGF 311
GTL + H +P L+ +L + L T L
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVN---MLGSPVDSV------LFHAITTLHN-- 260
Query: 312 LPYCEPVYRRCVSL--IEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHI 369
L + + V L Q + + + + F+ + D L LA G
Sbjct: 261 LLLHQEGAKMAVRLAGGLQKMVALL---------NKTNVKFLAITTDCLQILAYGNQESK 311
Query: 370 DSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNL 427
++++ L+ ++ ++ +L L + S P I + M LG +L
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL--SVCSSNKPAIVEAGGMQALGLHL 369
Query: 428 NPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGR 487
+ N W + +S + + ++ L+ ++ + ++ A +
Sbjct: 370 TDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDI--NVVTCAAGILSN 425
Query: 488 LGY---------VCPHDVAPLCSSLRNIRDNEE 511
L + L ++ D E+
Sbjct: 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458
Score = 29.2 bits (65), Expect = 5.0
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Query: 68 SSLSDWNLRKCSAAALDVLANVFREELLPV---LLPILKETLFHHDWEIKESGILALGAI 124
+ + + AL +LA ++ +P+ + L+ I+ L +
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166
A+ L L + V L R S
Sbjct: 621 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 38.5 bits (89), Expect = 0.005
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 320 RRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIM 379
+ C+ ++ Q + ++ D+ AL+LL+ L E +D D S +
Sbjct: 31 KSCLRVLSQPMPPTAGEAEQAA-----DQQEREGALELLADLCENMDNAAD-FCQLSGMH 84
Query: 380 HLLYQCMQDPMPEVRQSSFALLGDLTKAC-FSHVHPCISDFMPILGQNLNPDL-ISVCNN 437
L+ + ++ +R + L+G ++ + L + L+ D +V
Sbjct: 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 144
Query: 438 ATWAIGEI 445
A +AI +
Sbjct: 145 ALFAISCL 152
Score = 38.1 bits (88), Expect = 0.006
Identities = 24/187 (12%), Positives = 62/187 (33%), Gaps = 19/187 (10%)
Query: 344 DAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD 403
+A A L+ ++ + + ++ + LL +D VR + +
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151
Query: 404 LTKACFSHVHPCISDFM-----PILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP 458
L + + F+ +L + + + + + + + + V E
Sbjct: 152 LVR----EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207
Query: 459 M-VINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVA-------PLCSSLRNIRDNE 510
M ++ QL+ ++ ++P E+ + L P V L LR+
Sbjct: 208 MGMVQQLVALVRTEHSP--FHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265
Query: 511 EKDSAFR 517
++ ++
Sbjct: 266 QQHEEYQ 272
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 38.8 bits (90), Expect = 0.006
Identities = 57/445 (12%), Positives = 127/445 (28%), Gaps = 76/445 (17%)
Query: 68 SSLSDWNLRKCSAAALDVLAN-------VFREELLPVLLPILKETLFHHDWEIKESGILA 120
+ +D +C+A L L++ +F+ +P L+ +L + I
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITT 121
Query: 121 LGAIAEGCMN--------GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQ 172
L + G + ++ L+ AIT L ++
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQK-------MVALLNKTNVKFLAITTDCLQILAY----- 169
Query: 173 PHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCL-SDKKALVRAITCWTLSRYSHWVVS 231
+ K ++ G L+ + + + T L S +
Sbjct: 170 -GNQESKLIILASGG------------PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216
Query: 232 QP---HDSYLKPLMT--EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNIL 286
+P ++ L + ++ + + TL + + LL L+Q +L
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL-GTLVQ---LL 272
Query: 287 KDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVS---LIEQTLNQHMANSQNPEQF 343
+D ++ ++ A L L + V IE + + +
Sbjct: 273 GSDDINV------VTCAAGILSN--LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 344 DAPDKDFMIVALDLLSGLAEGLDMH--IDSLVSNSNIMHLLYQCMQDP-MPEVRQSSFAL 400
+ A+ L L + V + ++ + + P + +++ L
Sbjct: 325 EP--------AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376
Query: 401 LGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMV 460
+ +L +H +P L Q L + + G M V
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436
Query: 461 INQLIIIINRPNTPKTLLENTAITI 485
L I+ + + I +
Sbjct: 437 TGALHILARDVHNRIVIRGLNTIPL 461
Score = 31.8 bits (72), Expect = 0.65
Identities = 37/245 (15%), Positives = 66/245 (26%), Gaps = 41/245 (16%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEG----- 127
W LR S AA E LL L+ +L D + L +
Sbjct: 246 WTLRNLSDAATKQEGM---EGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNK 298
Query: 128 ---CMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLS------RYSHWVVSQPHDSYL 178
C G + L V + + + L + + + Y
Sbjct: 299 MMVCQVGGIEALVRTV-----LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 353
Query: 179 KPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAIT--------CWTLSRYSHWVV 230
P++ ++L L + LI L+ A + L R
Sbjct: 354 LPVVVKLLH--PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 411
Query: 231 SQPHDSYLKPLMTE-HKNLLILYDAIGTLADSVGHHLNKPEYISL-LMPPLIQKWNILKD 288
+ + E + I+ G L N+ L +P +Q +L
Sbjct: 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ---LLYS 468
Query: 289 EDKDL 293
+++
Sbjct: 469 PIENI 473
Score = 31.4 bits (71), Expect = 0.94
Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 12/149 (8%)
Query: 344 DAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGD 403
+ + F+ + D L LA G ++++ L+ ++ ++ +L
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 209
Query: 404 LTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM-- 459
L + S P I + M LG +L + N W + +S + + M
Sbjct: 210 L--SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS----DAATKQEGMEG 263
Query: 460 VINQLIIIINRPNTPKTLLENTAITIGRL 488
++ L+ ++ + ++ A + L
Sbjct: 264 LLGTLVQLLGSDDI--NVVTCAAGILSNL 290
Score = 30.7 bits (69), Expect = 1.6
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 3/103 (2%)
Query: 67 DSSLSDWNLRKCSAAALDVLANVFREELLPV---LLPILKETLFHHDWEIKESGILALGA 123
+ + + AL +LA ++ +P+ + L+ I+ L
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYS 166
+A+ L L + V L R S
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 37.1 bits (85), Expect = 0.012
Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 19/203 (9%)
Query: 91 REELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150
+ L L LFH D++ + + +L +A+ ++ + + L+ + +
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFET 99
Query: 151 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDK 210
+ ++ VP+L+ +
Sbjct: 100 NPAALIKVLELCKVIVELIRDTETPMS---------------QEEVSAFVPYLLLKTGEA 144
Query: 211 KALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPE 270
K +R ++ S V L + KN + + + + + P
Sbjct: 145 KDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQRSECLLVIEYYITNAGISPL 203
Query: 271 YISLLMPPLIQKWNILKDEDKDL 293
+ + + D+D ++
Sbjct: 204 KSLSVEKTVAP---FVGDKDVNV 223
Score = 34.4 bits (78), Expect = 0.086
Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 43/219 (19%)
Query: 18 EDEMIPDRDEDIRPR-FHKS-KRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLS--DW 73
+ + + + FHK K+ + A + + + + D L +L +
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFET 99
Query: 74 NLRKCSAAALDVLANVFR----------EELLPVLLPILKETLFHHDWEIKESGILALGA 123
N L++ + +E + +P L ++ S +
Sbjct: 100 NP-AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 124 IAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMT 183
+++ + P L+ L K A R+ ++
Sbjct: 159 LSDVVGPLKM------TPMLLDALKSKNARQRSECL--------------------LVIE 192
Query: 184 EMLGCMNGMVPHLNELVPFLITCLSDKKALVR--AITCW 220
+ + + + DK VR AI
Sbjct: 193 YYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVL 231
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Length = 196
Score = 36.4 bits (84), Expect = 0.013
Identities = 22/175 (12%), Positives = 58/175 (33%), Gaps = 40/175 (22%)
Query: 134 PHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCM--N- 190
L +LVP+ I +S+ ++ ++ + + + N
Sbjct: 36 SGLQQLVPYFIQHISEL------------------ILKSFKEAEVLKTCIALYFSLIKNK 77
Query: 191 --GMVPHLNELVPFLITCLSDKK----------ALVRAITCWTLSRYSHWVVSQPHDSYL 238
+ P+L++++P L+TC+ K A + T SR + + +
Sbjct: 78 HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137
Query: 239 KPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYI-SLLMPPLIQKWNILKDEDKD 292
M +++ Y A+ L+ + + +++ + + +
Sbjct: 138 GVWMDPNRSEDSQYGALYCLS-ILS-----KNVVNTVIREHAEEYKRTIGKKKVT 186
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 37.2 bits (85), Expect = 0.015
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 70 LSDWNLRKCSAAALD---------VLANVFRE-------ELLPVL-----LPILKETLFH 108
S + D +A V R+ + P++ + L L
Sbjct: 216 DSKLFSKIYEILVTDKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGPNDIIEQLVGFLDS 274
Query: 109 HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSR 164
DW+++ SG++ALG + E V + L L++ LS ++ ++ L
Sbjct: 275 GDWQVQFSGLIALGYLKE-----FVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCH 325
Score = 29.5 bits (65), Expect = 4.5
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 8/100 (8%)
Query: 25 RDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALD 84
+F+ S++ + + D+D + + R
Sbjct: 110 YLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPI 169
Query: 85 VLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
F E++ + L ++W + LA A+
Sbjct: 170 ENVLDFFEQIS--------DNLLSYEWYKRHGAFLAFAAM 201
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 34.5 bits (78), Expect = 0.092
Identities = 55/346 (15%), Positives = 101/346 (29%), Gaps = 31/346 (8%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIAE 126
++ +AA L L + V +P+L L H E+ AL I+
Sbjct: 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119
Query: 127 GCMNGMVPHLNEL--VPFLITCL--SDKKALVRAIT--CWTLSRYSHWVVSQPHDSYLKP 180
G + VP L+ L + L IT W LS + + + L
Sbjct: 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA-LHA 178
Query: 181 LMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKP 240
L E++ +G NE V T L S S +
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWES----VLTNTAGCLRNVSS------ERSEARR 228
Query: 241 LMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECL 300
+ E L+ I + +G + + + + L + E E
Sbjct: 229 KLRECDGLVDA--LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286
Query: 301 SSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSG 360
+VA E +++ V + + S+ P + A+ L
Sbjct: 287 PNVANNTGTSPARGYELLFQPEV---VRIYISLLKESKTPAI-----LEASAGAIQNLCA 338
Query: 361 LAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTK 406
+I S + + + + + V +++ L +L
Sbjct: 339 GRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384
Score = 28.8 bits (63), Expect = 6.6
Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 20/146 (13%)
Query: 358 LSGLAEGLDMHIDSLVSNSNI--------MHLLYQCMQDPMPEVRQSSFALLGDLTKACF 409
L+ G +DSL + + + + V+ ++ A L L
Sbjct: 21 LAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80
Query: 410 SH-VHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRY------VPMVIN 462
+P+L L+ V A A+ IS +D + VP ++
Sbjct: 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 463 QLIIIINRPNTPKTLLENTAITIGRL 488
L R L E T+ L
Sbjct: 141 LL-----RKARDMDLTEVITGTLWNL 161
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 33.7 bits (77), Expect = 0.18
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGM 132
N+ A D + L LL LK H I + L ++
Sbjct: 243 RNVSSLIATNEDHRQILRENNCLQTLLQHLK----SHSLTIVSNACGTLWNLSARNPKDQ 298
Query: 133 VPHLNE-LVPFLITCLSDKKALVRAITCWTLSR 164
+ V L + K ++ + L
Sbjct: 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
Score = 31.7 bits (72), Expect = 0.68
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPM--VINQLIIIINRPNTPKTL 477
M L L + + + +S + + ++ + + L+
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES-T 187
Query: 478 LENTAITIGRLGYVCPHDVAPLCS 501
L++ + L C + A +C+
Sbjct: 188 LKSVLSALWNLSAHCTENKADICA 211
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 32.5 bits (73), Expect = 0.42
Identities = 47/428 (10%), Positives = 103/428 (24%), Gaps = 47/428 (10%)
Query: 57 VEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLF--HHDWEIK 114
++D + + + L S D F + L + L D +I+
Sbjct: 339 YHSKNDGIRVRALVGLCKL--GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396
Query: 115 ESGILALGAIAEG-CMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQP 173
L + + + L+ T + Q
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456
Query: 174 HDSYLKPLMTEMLGCMNGMVPHLNE--------------LVPFLITCLSDKKALVRAITC 219
+ L + + + L + + +
Sbjct: 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516
Query: 220 WTLSRYSHWVVSQPHDSY------LKPLMT--EHKNLLILYDAIGTLADSVGHHLNKPEY 271
L+ + +K L+ A LA + +
Sbjct: 517 RVLN---AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573
Query: 272 ISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLN 331
+I+ L +D E AL E V +R + +
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFES----LMAL-TNLASMNESVRQRIIKEQGVSKI 628
Query: 332 QHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMP 391
++ + A A L L + I N++ + L +D
Sbjct: 629 EYYLMEDHLYLTRA--------AAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDE 679
Query: 392 EVRQSSFALLGDLTKACFSHVHPCI--SDFMPILGQNLNPDLISVCNNATWAIGEISVKL 449
E + L +T + + ++ IL + +V + I + +
Sbjct: 680 ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM-INA 738
Query: 450 GEDMRRYV 457
GE++ + +
Sbjct: 739 GEEIAKKL 746
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 32.5 bits (73), Expect = 0.53
Identities = 13/102 (12%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 49 MGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFH 108
+G + + S + ++R +A AL + L + +L
Sbjct: 602 LGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFAL---GIACAGKGLQSAIDVLDPLTKD 658
Query: 109 HDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDK 150
++++ ++AL I + P + ++ ++ +++K
Sbjct: 659 PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK 700
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 64 LDDDSSLSDWNLRKCSAAALDVLAN-----------VFREELLPVLLPILKETLFHHDWE 112
L S + + + L +++ + L LL LK H
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK----SHSLT 394
Query: 113 IKESGILALGAIAEGCMNGMVPHLNE-LVPFLITCLSDKKALVRAITCWTLSR 164
I + L ++ + V L + K ++ + L
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
Score = 28.4 bits (63), Expect = 6.8
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMV--INQLIIIINRPNTPKTL 477
M L L + + + +S + + ++ + V + L+
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES-T 303
Query: 478 LENTAITIGRLGYVCPHDVAPLCS 501
L++ + L C + A +C+
Sbjct: 304 LKSVLSALWNLSAHCTENKADICA 327
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 31.0 bits (70), Expect = 1.2
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 80 AAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNE- 138
AL L + E+ L +++ L + +++ L + VP L E
Sbjct: 125 GLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR-----KVPELMEM 179
Query: 139 LVPFLITCLSDKKALVRA 156
+P L++K V
Sbjct: 180 FLPATKNLLNEKNHGVLH 197
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 30.1 bits (68), Expect = 2.3
Identities = 53/383 (13%), Positives = 131/383 (34%), Gaps = 50/383 (13%)
Query: 80 AAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHL--- 136
A A+ + + +++ L L++ L D ++++ + + + + + +
Sbjct: 104 ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-----INAQMVED 158
Query: 137 NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHL 196
+ L ++D +V A LS + +S L L + + N ++ L
Sbjct: 159 QGFLDSLRDLIADSNPMVVANAVAALSE----ISESHPNSNLLDLNPQNI---NKLLTAL 211
Query: 197 NELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIG 256
NE + ++ ++ + +Q + P ++ H N ++ A+
Sbjct: 212 NECTEWGQI------FILDCLSNYNPKDDRE---AQSICERVTPRLS-HANSAVVLSAVK 261
Query: 257 TLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDL-FPLLECLSSVATALQAGFLPYC 315
L + +Y ++L+ L L + ++ + L ++ +
Sbjct: 262 VLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEI 321
Query: 316 EPVYRRC---VSLIEQTLN--QHMANSQN--------PEQFDAPDKDFMIVALDLLSGLA 362
+ + + + + + L+ +A+ N E D DF+ A+ + A
Sbjct: 322 KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381
Query: 363 EGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPI 422
++ S + L +Q + V Q + ++ D+ F +
Sbjct: 382 IKVE------QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDI----FRKYPNKYESIIAT 431
Query: 423 LGQNL-NPDLISVCNNATWAIGE 444
L +NL + D W +GE
Sbjct: 432 LCENLDSLDEPDARAAMIWIVGE 454
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 29.4 bits (65), Expect = 3.7
Identities = 47/426 (11%), Positives = 107/426 (25%), Gaps = 53/426 (12%)
Query: 71 SDWNLRKCSAAALDVLANVFREELLPVL----LPILKETLFHHDWEIKESGILALGAIAE 126
D + A + V + L + L + ++++ AL +
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 127 GCM-NGMVPHLNELVPFLITCL-SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
N + + ++ L A ++ L S LK +
Sbjct: 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS-------STDELKEELIA 126
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
+P L + V + +S W + E
Sbjct: 127 ------DALPVLADRV---------------------IIPFSGWCDG------NSNMSRE 153
Query: 245 HKNLLILYDAIGTLADSVGHHLNKPEYISL--LMPPLIQKWNILKDEDKDLFPLLECLSS 302
+ + ++A G L + + + L+ L+ + +E
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 303 VATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLA 362
V L YR+ + + + D + L
Sbjct: 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273
Query: 363 EGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCI---SDF 419
+G S + + +L+ + +D E + L S + I
Sbjct: 274 KGSGWLYHSDAIRTYL-NLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 420 MPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLE 479
+P + + L V + + +S R V ++ ++ + E
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391
Query: 480 NTAITI 485
+ +
Sbjct: 392 DILSSA 397
Score = 28.6 bits (63), Expect = 6.5
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 73 WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMN-- 130
NL ++ + + LP + L + ++ SG L ++ +
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEK--GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366
Query: 131 ----GMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHW 168
+ P + L+ S+ + ++ + C+T+
Sbjct: 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSA-CYTVRNLMAS 407
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 4.0
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 17 EEDEMIPDRDEDIRPRFHKSKRSVKAEGENM----------NMGENGGEE---VEEEDDD 63
E+ + + + D + + + K + E N N + ++ D D
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Query: 64 L 64
+
Sbjct: 153 I 153
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 29.0 bits (66), Expect = 4.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 334 MANSQNPEQFDAPDKDFMIVALDL 357
M S + + ++ +M +ALDL
Sbjct: 1 MRGSHHHHHHGSMEEYYMKLALDL 24
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 28.7 bits (64), Expect = 5.7
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 517 RGMCAMITVNPGGVVQEFIFFCDAVASWSTPK-----EDLKEMFHKILHGFRTQVGDENW 571
+G +I G +V+ ++ A E L ++LH ++ +V + W
Sbjct: 254 QGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYKLEVKNVPW 313
Query: 572 -------QRFADQFPDQLRDRLS 587
QR ++ D + +
Sbjct: 314 WSVYEIGQRICAKYDDVVDAVAT 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,368,156
Number of extensions: 575447
Number of successful extensions: 1637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 151
Length of query: 592
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 493
Effective length of database: 3,937,614
Effective search space: 1941243702
Effective search space used: 1941243702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)