BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9906
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
W+P E+G KESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
RSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
+WP+LLP L +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 368 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 401
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
W+P E+G KESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
RSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
+WP+LLP L +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 393 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 426
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 209 bits (533), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
W+P E+G KESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
RSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
+WP+LLP L +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/142 (72%), Positives = 116/142 (81%)
Query: 3 WQPQEEGXXXXXXXXKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
W+P E+G KESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 64
Query: 63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
RSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 65 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 124
Query: 123 SWPELLPTLNDMLDSQDYNVCE 144
+WP+LLP L +LDS+DYN CE
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCE 146
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
ELLP +LP+LKE LFHH+W +KESGIL LGAIAE
Sbjct: 393 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 426
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G+I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGSILE 395
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 315 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILE 395
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 190 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 246
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ ++A G I E
Sbjct: 247 KEHIKNPDWRYRDAAVMAFGCILE 270
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 117 SKGDLKSWPELLPTLNDMLDSQDYN-------------VC----------ELLPVLLPIL 153
+KG L+ L+P L L QD N VC +++P +LP +
Sbjct: 321 AKGALQY---LVPILTQTLTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFI 377
Query: 154 KETLFHHDWEIKESGILALGAIAE 177
KE + + DW +++ + A G+I E
Sbjct: 378 KEHIKNPDWRYRDAAVXAFGSILE 401
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 53 TKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILI 112
T + S+ E R +S + LK + E PP S SA+ + + + G L
Sbjct: 116 TNMLSDKEQLRDISSIGLKTVIG----ELPPASSG-------SALA--ANVCKKITGRLT 162
Query: 113 TTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILAL 172
+ IA + D+ E L + DML Q + P +L L L +++ I+AL
Sbjct: 163 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 222
Query: 173 G 173
G
Sbjct: 223 G 223
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 53 TKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILI 112
T + S+ E R +S + LK + E PP S SA+ + + + G L
Sbjct: 93 TNMLSDKEQLRDISSIGLKTVIG----ELPPASSG-------SALA--ANVCKKITGRLT 139
Query: 113 TTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILAL 172
+ IA + D+ E L + DML Q + P +L L L +++ I+AL
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199
Query: 173 G 173
G
Sbjct: 200 G 200
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 29 RAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------FP 82
+ + L QL T F L+ V+ T+ TR L KN ++ ++ + P
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79
Query: 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD 139
E IK+E + + ++ +G I++IA WP LL L L + D
Sbjct: 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 29 RAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------FP 82
+ + L QL T F L+ V+ T+ TR L KN ++ ++ + P
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79
Query: 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD 139
E IK+E + + ++ +G I++IA WP LL L L + D
Sbjct: 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 61 PTRSLSGLILKNNVRARFYEFPPGVSEF 88
PT + + L L+ +A F E+ PG SEF
Sbjct: 248 PTSAAAELTLRKAAKAGFIEYIPGASEF 275
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 18 KESQSPDNLIQRAVQHKLEQLNTHPDFNNYLI----FVLTKLTSEDEPTRSLSGLILKNN 73
K+ ++ N +Q AV H Q N P Y++ + T ++D+ +S++ L
Sbjct: 64 KDKKTAANAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETL--- 119
Query: 74 VRARFYEFPPGVSEFIKQECLSAIGDPSPL-IRATVGILITTIASKGDLKSWPELLPTLN 132
+S + +P+ I+A + L I + +L +
Sbjct: 120 --------------------ISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFS 159
Query: 133 DMLDSQDYNVCELLPVLLPILKETLFHHDWEIK 165
M+D+ V +P L+P+L ET++ E+K
Sbjct: 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 67 GLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTI--ASKGDLKSW 124
G+ +N + Y++ G+ ++ L+ I +P I A G LIT + K K +
Sbjct: 247 GVSYENEETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRF 306
Query: 125 PELLPTLNDMLDSQDYNVCELLPVLLP 151
+ +ND L Y+ + V+ P
Sbjct: 307 VIVDAGMNDFLRPSLYHAKHAIRVITP 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,547,334
Number of Sequences: 62578
Number of extensions: 212639
Number of successful extensions: 489
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 24
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)