Query psy9906
Match_columns 191
No_of_seqs 146 out of 1287
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:41:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023|consensus 99.9 1.5E-27 3.3E-32 208.9 9.0 156 1-156 3-158 (885)
2 KOG2171|consensus 99.9 2.6E-25 5.7E-30 204.2 18.4 170 9-180 2-191 (1075)
3 KOG1991|consensus 99.9 3.8E-25 8.2E-30 200.5 18.0 148 9-157 2-158 (1010)
4 KOG1241|consensus 99.9 2E-23 4.3E-28 185.2 12.8 169 12-183 2-185 (859)
5 KOG2274|consensus 99.9 5.8E-23 1.3E-27 184.9 13.6 146 10-156 3-158 (1005)
6 KOG1992|consensus 99.9 3.2E-22 7E-27 178.8 12.8 147 8-155 2-155 (960)
7 KOG1993|consensus 99.9 5.1E-22 1.1E-26 177.0 13.3 142 13-155 2-152 (978)
8 COG5656 SXM1 Importin, protein 99.8 2.4E-19 5.3E-24 159.2 14.3 144 11-156 3-156 (970)
9 COG5657 CSE1 CAS/CSE protein i 99.8 3.9E-19 8.5E-24 160.6 14.0 142 13-155 6-152 (947)
10 COG5215 KAP95 Karyopherin (imp 99.7 5.4E-17 1.2E-21 141.3 14.2 144 12-157 5-165 (858)
11 COG5101 CRM1 Importin beta-rel 99.6 1.6E-14 3.4E-19 127.4 13.7 150 9-161 12-170 (1053)
12 PF03810 IBN_N: Importin-beta 99.6 4.9E-15 1.1E-19 99.0 8.1 67 31-98 1-76 (77)
13 KOG2020|consensus 99.5 8.2E-13 1.8E-17 123.8 14.7 151 8-161 7-168 (1041)
14 KOG1241|consensus 98.9 1.8E-08 4E-13 90.9 11.7 175 13-187 174-403 (859)
15 KOG2021|consensus 98.8 1.3E-07 2.7E-12 85.6 15.3 145 11-156 3-159 (980)
16 PF08389 Xpo1: Exportin 1-like 98.7 5.9E-08 1.3E-12 71.9 7.1 58 101-159 1-58 (148)
17 COG5215 KAP95 Karyopherin (imp 98.5 3E-06 6.5E-11 75.1 13.4 172 13-184 178-402 (858)
18 KOG2022|consensus 98.4 1.1E-05 2.3E-10 74.4 15.1 147 9-157 5-161 (982)
19 KOG1410|consensus 98.1 0.00012 2.6E-09 66.3 15.1 144 10-158 7-160 (1082)
20 PRK09687 putative lyase; Provi 98.0 0.00025 5.5E-09 58.7 14.3 150 15-175 27-186 (280)
21 KOG2081|consensus 97.9 9.3E-05 2E-09 65.5 10.5 127 29-160 2-131 (559)
22 PRK09687 putative lyase; Provi 97.7 0.0016 3.5E-08 53.9 13.3 140 20-175 63-219 (280)
23 KOG2023|consensus 97.5 0.0043 9.2E-08 56.5 14.5 164 17-181 180-426 (885)
24 PRK13800 putative oxidoreducta 97.4 0.0054 1.2E-07 58.6 15.2 149 15-177 625-804 (897)
25 KOG1824|consensus 97.3 0.0046 1E-07 58.2 12.7 155 15-180 861-1039(1233)
26 PRK13800 putative oxidoreducta 97.3 0.017 3.8E-07 55.2 17.0 147 21-175 662-834 (897)
27 KOG2171|consensus 97.2 0.025 5.3E-07 54.2 16.5 120 15-135 83-211 (1075)
28 PTZ00429 beta-adaptin; Provisi 96.9 0.051 1.1E-06 50.9 15.4 134 21-155 42-208 (746)
29 PF02985 HEAT: HEAT repeat; I 96.8 0.0024 5.3E-08 34.7 3.6 30 149-178 1-30 (31)
30 PF01602 Adaptin_N: Adaptin N 96.7 0.032 6.9E-07 49.5 12.1 127 19-153 50-179 (526)
31 PF13646 HEAT_2: HEAT repeats; 96.5 0.011 2.4E-07 39.4 6.3 75 92-173 3-88 (88)
32 PF13646 HEAT_2: HEAT repeats; 96.5 0.048 1E-06 36.3 9.1 85 12-113 3-88 (88)
33 PF12348 CLASP_N: CLASP N term 96.3 0.16 3.4E-06 40.2 12.6 117 14-135 97-219 (228)
34 PF10508 Proteasom_PSMB: Prote 96.1 0.17 3.6E-06 45.4 13.1 158 24-186 51-238 (503)
35 cd00020 ARM Armadillo/beta-cat 96.1 0.016 3.5E-07 40.4 5.3 106 42-154 6-119 (120)
36 PTZ00429 beta-adaptin; Provisi 95.8 0.81 1.8E-05 43.1 16.5 163 11-178 105-286 (746)
37 PF01602 Adaptin_N: Adaptin N 95.7 0.28 6E-06 43.5 12.6 157 10-175 6-179 (526)
38 KOG0166|consensus 95.6 0.16 3.5E-06 45.4 10.7 161 11-181 112-312 (514)
39 KOG2956|consensus 95.4 1.5 3.3E-05 38.8 15.4 170 3-177 277-477 (516)
40 PF12717 Cnd1: non-SMC mitotic 95.2 1 2.2E-05 34.5 15.4 130 24-157 1-138 (178)
41 PF10508 Proteasom_PSMB: Prote 95.2 0.53 1.1E-05 42.2 12.8 137 15-155 81-231 (503)
42 COG5096 Vesicle coat complex, 95.2 0.63 1.4E-05 43.6 13.3 68 88-156 127-196 (757)
43 KOG1242|consensus 94.8 1.2 2.6E-05 40.4 13.7 129 10-139 215-346 (569)
44 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.17 3.6E-06 35.2 6.2 69 86-154 25-96 (97)
45 PF10363 DUF2435: Protein of u 94.5 1 2.3E-05 30.9 10.0 76 56-138 13-89 (92)
46 PF12717 Cnd1: non-SMC mitotic 94.2 0.65 1.4E-05 35.6 9.5 91 60-155 2-92 (178)
47 PF12348 CLASP_N: CLASP N term 94.1 0.35 7.5E-06 38.2 8.0 125 56-180 17-163 (228)
48 TIGR02270 conserved hypothetic 93.8 1.2 2.6E-05 39.0 11.4 107 21-150 96-202 (410)
49 PLN03200 cellulose synthase-in 93.6 4.6 9.9E-05 42.2 16.2 157 10-180 490-683 (2102)
50 PF02985 HEAT: HEAT repeat; I 93.6 0.24 5.3E-06 26.6 4.4 28 91-118 3-30 (31)
51 cd00020 ARM Armadillo/beta-cat 93.6 1.1 2.4E-05 30.8 9.1 101 10-116 9-119 (120)
52 COG1413 FOG: HEAT repeat [Ener 93.4 3.1 6.7E-05 34.8 13.0 46 93-143 185-230 (335)
53 COG5096 Vesicle coat complex, 92.8 4.9 0.00011 37.9 14.2 144 24-175 32-193 (757)
54 PF12719 Cnd3: Nuclear condens 92.7 5 0.00011 33.3 17.0 161 18-181 34-211 (298)
55 PF12530 DUF3730: Protein of u 92.7 4.4 9.5E-05 32.6 13.6 128 23-155 13-151 (234)
56 PF13251 DUF4042: Domain of un 92.5 0.12 2.6E-06 40.2 3.0 70 103-182 1-74 (182)
57 TIGR02270 conserved hypothetic 92.5 6.8 0.00015 34.3 14.7 131 22-175 66-205 (410)
58 PLN03200 cellulose synthase-in 91.4 5.5 0.00012 41.7 13.7 106 42-150 608-718 (2102)
59 COG5064 SRP1 Karyopherin (impo 91.1 6.8 0.00015 33.8 12.0 177 3-181 62-318 (526)
60 COG1413 FOG: HEAT repeat [Ener 90.5 9.2 0.0002 31.9 13.5 89 13-116 45-134 (335)
61 PF05918 API5: Apoptosis inhib 90.0 5.3 0.00011 36.4 11.1 100 12-120 24-128 (556)
62 PF01603 B56: Protein phosphat 89.2 15 0.00031 32.2 13.9 160 11-170 133-319 (409)
63 PF12830 Nipped-B_C: Sister ch 88.9 2.1 4.6E-05 33.1 7.0 68 87-156 8-75 (187)
64 KOG2062|consensus 88.8 9.4 0.0002 36.0 11.8 85 87-176 554-652 (929)
65 KOG1059|consensus 88.8 14 0.00031 34.7 12.9 76 57-138 155-230 (877)
66 KOG0166|consensus 88.7 11 0.00023 34.1 11.9 164 9-178 64-267 (514)
67 PF13513 HEAT_EZ: HEAT-like re 88.5 0.14 3E-06 31.2 0.0 37 102-138 1-40 (55)
68 KOG1060|consensus 88.1 19 0.00042 34.2 13.3 142 9-155 36-209 (968)
69 KOG0211|consensus 87.9 22 0.00048 33.8 13.9 150 25-177 493-664 (759)
70 KOG1242|consensus 87.7 22 0.00048 32.5 14.3 94 87-180 215-330 (569)
71 PF13251 DUF4042: Domain of un 87.2 2.2 4.7E-05 33.2 6.0 57 62-118 2-70 (182)
72 KOG1824|consensus 87.1 5.3 0.00012 38.5 9.3 119 56-179 976-1097(1233)
73 PF13513 HEAT_EZ: HEAT-like re 86.3 1.4 3.1E-05 26.5 3.8 54 61-115 2-55 (55)
74 KOG1949|consensus 85.5 8.5 0.00018 36.1 9.6 135 18-155 181-331 (1005)
75 KOG1061|consensus 85.3 33 0.00072 32.3 15.3 144 12-155 14-189 (734)
76 KOG1943|consensus 85.2 12 0.00025 36.6 10.6 131 18-154 478-610 (1133)
77 PF09324 DUF1981: Domain of un 85.0 5.4 0.00012 26.9 6.4 66 86-152 16-85 (86)
78 PF04826 Arm_2: Armadillo-like 84.0 22 0.00047 29.1 14.6 138 7-155 11-163 (254)
79 PF13001 Ecm29: Proteasome sta 83.8 32 0.0007 30.9 12.9 82 13-99 25-113 (501)
80 KOG1060|consensus 82.8 6.8 0.00015 37.1 7.9 81 92-175 39-135 (968)
81 KOG0213|consensus 81.8 50 0.0011 31.6 14.1 31 44-74 797-827 (1172)
82 PF11698 V-ATPase_H_C: V-ATPas 81.4 5.9 0.00013 28.6 5.7 75 44-120 44-118 (119)
83 KOG0212|consensus 80.7 22 0.00049 32.5 10.1 129 9-138 164-303 (675)
84 KOG2025|consensus 79.1 59 0.0013 30.8 13.9 159 9-171 6-187 (892)
85 KOG0392|consensus 79.0 21 0.00045 35.8 9.9 97 57-153 88-194 (1549)
86 PF03224 V-ATPase_H_N: V-ATPas 78.2 9.1 0.0002 31.9 6.8 112 42-154 54-178 (312)
87 PF01465 GRIP: GRIP domain; I 78.2 6.5 0.00014 23.3 4.3 36 84-119 3-38 (46)
88 KOG1991|consensus 78.2 71 0.0015 31.2 13.3 143 11-155 265-447 (1010)
89 KOG0413|consensus 78.1 65 0.0014 31.8 12.6 120 56-182 1016-1164(1529)
90 COG5181 HSH155 U2 snRNP splice 76.8 40 0.00086 31.5 10.6 30 42-71 600-629 (975)
91 KOG1293|consensus 76.8 18 0.00038 33.5 8.4 124 58-181 389-537 (678)
92 KOG1077|consensus 76.3 72 0.0016 30.3 14.5 90 59-155 342-433 (938)
93 KOG0211|consensus 75.5 53 0.0012 31.3 11.5 127 24-154 172-304 (759)
94 KOG0414|consensus 74.8 63 0.0014 32.2 11.8 141 14-154 273-427 (1251)
95 COG5181 HSH155 U2 snRNP splice 74.4 8.8 0.00019 35.6 5.9 82 100-184 293-394 (975)
96 PF10363 DUF2435: Protein of u 74.3 19 0.00042 24.6 6.4 49 92-140 7-57 (92)
97 PF07571 DUF1546: Protein of u 74.1 21 0.00046 24.3 6.6 54 59-113 19-72 (92)
98 PLN03076 ARF guanine nucleotid 73.6 90 0.002 32.8 13.3 119 58-177 1149-1279(1780)
99 smart00755 Grip golgin-97, Ran 71.9 9.7 0.00021 22.6 3.9 34 85-119 3-36 (46)
100 PF08167 RIX1: rRNA processing 71.9 40 0.00087 25.4 8.6 101 47-155 29-143 (165)
101 cd00870 PI3Ka_III Phosphoinosi 70.6 11 0.00025 28.7 5.1 47 24-73 59-105 (166)
102 PF08167 RIX1: rRNA processing 69.7 33 0.00071 25.9 7.4 95 82-176 19-118 (165)
103 PF00514 Arm: Armadillo/beta-c 69.6 12 0.00027 20.9 4.0 26 92-117 16-41 (41)
104 COG5116 RPN2 26S proteasome re 68.4 9 0.00019 35.2 4.5 82 92-178 555-651 (926)
105 KOG2160|consensus 67.3 81 0.0017 27.1 11.5 152 21-175 93-280 (342)
106 cd00872 PI3Ka_I Phosphoinositi 66.4 14 0.00031 28.3 4.8 51 24-75 84-134 (171)
107 KOG2025|consensus 66.3 1.2E+02 0.0027 28.8 12.2 106 43-150 81-188 (892)
108 PF13925 Katanin_con80: con80 65.8 17 0.00037 27.5 5.2 53 100-155 41-98 (164)
109 PF12243 CTK3: CTD kinase subu 64.8 55 0.0012 24.3 7.6 60 92-157 12-71 (139)
110 KOG0213|consensus 64.7 1.4E+02 0.003 28.8 15.8 170 11-185 363-590 (1172)
111 PF04510 DUF577: Family of unk 64.6 18 0.00039 27.9 5.0 48 88-135 3-55 (174)
112 PF12460 MMS19_C: RNAPII trans 64.4 97 0.0021 27.0 13.0 146 9-156 226-395 (415)
113 KOG2956|consensus 64.3 94 0.002 27.9 9.9 113 11-134 371-491 (516)
114 PF05004 IFRD: Interferon-rela 63.2 50 0.0011 27.7 8.0 95 57-151 54-156 (309)
115 KOG1240|consensus 62.1 21 0.00046 35.5 6.0 56 127-182 657-730 (1431)
116 KOG0212|consensus 60.9 1E+02 0.0022 28.5 9.6 67 88-155 84-154 (675)
117 PF02194 PXA: PXA domain; Int 60.8 26 0.00056 26.6 5.5 27 59-85 5-31 (185)
118 PF12755 Vac14_Fab1_bd: Vacuol 59.9 54 0.0012 22.5 6.7 61 10-70 25-92 (97)
119 PF11865 DUF3385: Domain of un 59.2 9.9 0.00021 28.7 2.8 35 120-154 4-39 (160)
120 PF14676 FANCI_S2: FANCI solen 59.1 38 0.00083 25.6 6.0 101 65-171 37-155 (158)
121 KOG4224|consensus 56.2 41 0.00089 29.4 6.2 109 41-156 331-447 (550)
122 KOG0904|consensus 56.1 51 0.0011 31.9 7.2 63 12-76 613-675 (1076)
123 PF12830 Nipped-B_C: Sister ch 56.0 91 0.002 23.9 12.9 65 12-79 9-78 (187)
124 KOG4224|consensus 55.8 81 0.0018 27.7 7.9 114 22-138 178-304 (550)
125 PF08161 NUC173: NUC173 domain 55.5 15 0.00033 28.8 3.3 71 111-181 4-74 (198)
126 smart00145 PI3Ka Phosphoinosit 55.1 39 0.00084 26.2 5.5 47 24-73 57-103 (184)
127 KOG1820|consensus 54.9 2.1E+02 0.0045 27.7 11.8 104 16-119 341-445 (815)
128 KOG1820|consensus 53.4 2.2E+02 0.0047 27.5 15.9 155 15-176 257-442 (815)
129 KOG1020|consensus 52.7 83 0.0018 32.4 8.3 60 92-151 820-880 (1692)
130 PF03224 V-ATPase_H_N: V-ATPas 52.5 37 0.0008 28.3 5.4 78 57-135 116-200 (312)
131 KOG1062|consensus 52.4 1.2E+02 0.0025 29.2 8.8 69 81-150 135-203 (866)
132 smart00185 ARM Armadillo/beta- 51.8 32 0.0007 18.5 3.6 25 92-116 16-40 (41)
133 PF12765 Cohesin_HEAT: HEAT re 51.4 22 0.00047 20.5 2.8 24 148-171 18-41 (42)
134 cd00869 PI3Ka_II Phosphoinosit 49.2 45 0.00097 25.6 4.9 29 24-53 84-112 (169)
135 PF08713 DNA_alkylation: DNA a 48.5 77 0.0017 24.3 6.4 36 84-119 151-186 (213)
136 KOG0414|consensus 48.5 1.7E+02 0.0036 29.4 9.5 104 22-138 972-1083(1251)
137 KOG1062|consensus 47.8 2.7E+02 0.0058 26.9 16.3 82 58-142 306-401 (866)
138 KOG1967|consensus 46.7 1.1E+02 0.0024 29.8 7.9 85 93-177 872-982 (1030)
139 KOG0392|consensus 46.6 2.6E+02 0.0055 28.6 10.4 146 26-176 748-924 (1549)
140 KOG2199|consensus 46.1 42 0.00092 29.4 4.8 65 121-190 23-87 (462)
141 PF06628 Catalase-rel: Catalas 45.2 65 0.0014 20.5 4.6 38 77-114 16-54 (68)
142 PF07571 DUF1546: Protein of u 44.9 48 0.001 22.5 4.1 52 101-153 19-76 (92)
143 PF11841 DUF3361: Domain of un 44.7 74 0.0016 24.2 5.4 125 8-133 11-147 (160)
144 KOG1020|consensus 44.3 3.9E+02 0.0085 27.9 12.2 132 28-165 797-929 (1692)
145 KOG0915|consensus 44.0 1.1E+02 0.0024 31.5 7.8 72 83-154 990-1067(1702)
146 COG5098 Chromosome condensatio 43.8 79 0.0017 30.1 6.3 84 92-175 303-413 (1128)
147 PF12363 DUF3647: Phage protei 43.6 1.1E+02 0.0023 21.7 5.9 60 9-78 52-112 (113)
148 KOG1059|consensus 43.2 1.8E+02 0.0039 27.8 8.5 58 57-119 310-367 (877)
149 PF05804 KAP: Kinesin-associat 42.3 3.1E+02 0.0067 26.1 10.4 115 42-166 532-658 (708)
150 KOG1240|consensus 41.8 4E+02 0.0086 27.2 14.6 90 86-175 576-683 (1431)
151 cd06561 AlkD_like A new struct 41.5 99 0.0021 23.4 6.0 57 57-119 116-172 (197)
152 PF08568 Kinetochor_Ybp2: Unch 41.5 2.9E+02 0.0063 25.6 10.7 74 7-82 436-514 (633)
153 smart00638 LPD_N Lipoprotein N 41.2 1E+02 0.0022 28.0 6.8 33 42-74 476-508 (574)
154 KOG2259|consensus 40.9 3.2E+02 0.007 25.9 11.1 109 25-135 387-510 (823)
155 KOG2759|consensus 40.2 93 0.002 27.5 6.0 74 45-120 368-441 (442)
156 smart00638 LPD_N Lipoprotein N 40.2 2.1E+02 0.0046 25.9 8.7 19 87-105 513-533 (574)
157 KOG2973|consensus 40.2 1.6E+02 0.0035 25.1 7.2 30 12-41 4-33 (353)
158 PF05918 API5: Apoptosis inhib 39.2 3.1E+02 0.0068 25.2 16.9 153 7-159 91-275 (556)
159 COG4930 Predicted ATP-dependen 39.1 1.9E+02 0.0041 25.9 7.6 79 13-96 13-92 (683)
160 KOG1943|consensus 38.6 1.4E+02 0.003 29.7 7.3 99 84-182 337-462 (1133)
161 PF08389 Xpo1: Exportin 1-like 38.6 40 0.00086 24.0 3.2 68 26-97 67-135 (148)
162 COG5240 SEC21 Vesicle coat com 38.4 3.4E+02 0.0074 25.5 10.6 127 11-137 431-584 (898)
163 PF00613 PI3Ka: Phosphoinositi 37.8 1.9E+02 0.0041 22.3 7.3 116 4-138 4-123 (184)
164 cd00256 VATPase_H VATPase_H, r 37.8 96 0.0021 27.5 5.8 34 86-119 394-427 (429)
165 KOG1243|consensus 37.6 2.2E+02 0.0048 26.8 8.2 86 44-136 331-418 (690)
166 KOG2549|consensus 37.6 3.3E+02 0.0072 25.1 11.3 134 15-155 211-370 (576)
167 KOG2149|consensus 37.4 2.9E+02 0.0062 24.3 11.4 112 45-157 57-172 (393)
168 KOG0915|consensus 37.2 5.1E+02 0.011 27.1 11.5 76 56-132 1246-1321(1702)
169 KOG1967|consensus 37.1 2.1E+02 0.0045 28.1 8.1 93 88-180 909-1008(1030)
170 smart00567 EZ_HEAT E-Z type HE 36.8 32 0.00069 17.7 1.8 16 162-177 1-16 (30)
171 KOG1410|consensus 35.6 2.4E+02 0.0051 27.0 8.0 70 56-125 918-994 (1082)
172 KOG1248|consensus 35.2 4.9E+02 0.011 26.3 14.2 144 11-155 738-898 (1176)
173 PF10521 DUF2454: Protein of u 35.2 29 0.00063 28.6 2.1 56 106-161 98-154 (282)
174 KOG2160|consensus 34.8 3E+02 0.0064 23.7 9.9 99 15-119 128-242 (342)
175 PF08785 Ku_PK_bind: Ku C term 34.5 76 0.0016 22.6 4.0 56 83-138 21-80 (120)
176 cd08050 TAF6 TATA Binding Prot 34.1 3E+02 0.0064 23.5 11.4 127 20-154 187-339 (343)
177 KOG4653|consensus 34.0 4.6E+02 0.01 25.7 10.5 72 57-133 738-809 (982)
178 PRK10548 flagellar biosynthesi 33.7 64 0.0014 23.3 3.5 35 6-40 57-91 (121)
179 PF10274 ParcG: Parkin co-regu 33.1 2.3E+02 0.0051 22.0 8.8 91 43-135 35-126 (183)
180 PF11698 V-ATPase_H_C: V-ATPas 33.0 1.9E+02 0.0041 20.9 5.8 68 10-79 45-119 (119)
181 PF14228 MOR2-PAG1_mid: Cell m 32.9 3E+02 0.0064 27.7 8.8 87 64-159 488-576 (1120)
182 PF08767 CRM1_C: CRM1 C termin 32.1 3.1E+02 0.0067 23.0 8.6 128 61-189 91-237 (319)
183 PF05004 IFRD: Interferon-rela 31.4 3.1E+02 0.0068 22.9 9.5 56 102-157 200-259 (309)
184 PF00613 PI3Ka: Phosphoinositi 31.2 44 0.00096 25.8 2.5 51 24-75 90-140 (184)
185 PF14675 FANCI_S1: FANCI solen 31.1 2.1E+02 0.0045 23.0 6.4 58 81-138 21-80 (223)
186 cd00864 PI3Ka Phosphoinositide 31.0 1.3E+02 0.0029 22.4 4.9 57 13-72 41-97 (152)
187 PF14664 RICTOR_N: Rapamycin-i 30.9 3.5E+02 0.0076 23.4 11.9 127 19-150 33-171 (371)
188 PF13001 Ecm29: Proteasome sta 30.5 2.2E+02 0.0049 25.6 7.2 147 11-158 237-446 (501)
189 PF01347 Vitellogenin_N: Lipop 30.0 1.7E+02 0.0038 26.6 6.5 113 10-137 488-603 (618)
190 PF14631 FancD2: Fanconi anaem 29.8 3.5E+02 0.0076 28.0 8.9 91 25-119 394-504 (1426)
191 COG5064 SRP1 Karyopherin (impo 29.7 1.7E+02 0.0038 25.5 5.9 93 92-185 161-261 (526)
192 PF14225 MOR2-PAG1_C: Cell mor 29.1 1.3E+02 0.0028 24.8 4.9 49 108-156 170-218 (262)
193 PF13925 Katanin_con80: con80 29.0 1.7E+02 0.0037 22.0 5.3 70 108-178 30-99 (164)
194 PF00790 VHS: VHS domain; Int 28.9 2.3E+02 0.0049 20.5 7.0 53 122-179 21-73 (140)
195 PF09824 ArsR: ArsR transcript 28.6 2.4E+02 0.0051 21.5 5.8 45 9-53 88-132 (160)
196 cd03572 ENTH_epsin_related ENT 28.3 68 0.0015 23.2 2.8 34 122-155 34-67 (122)
197 PF06086 Pox_A30L_A26L: Orthop 27.9 70 0.0015 25.6 3.1 39 61-99 17-62 (220)
198 cd00256 VATPase_H VATPase_H, r 27.6 4.4E+02 0.0095 23.4 12.7 126 6-137 67-196 (429)
199 COG1578 Uncharacterized conser 27.4 3.7E+02 0.0079 22.4 8.5 44 127-170 57-106 (285)
200 PF03130 HEAT_PBS: PBS lyase H 27.3 52 0.0011 16.7 1.6 14 164-177 1-14 (27)
201 COG5218 YCG1 Chromosome conden 27.3 5.4E+02 0.012 24.3 14.1 144 9-155 9-161 (885)
202 PF04793 Herpes_BBRF1: BRRF1-l 26.8 3E+02 0.0065 23.0 6.7 79 44-122 37-115 (284)
203 KOG1837|consensus 26.3 4.5E+02 0.0098 27.4 8.7 93 62-157 1470-1572(1621)
204 PF01347 Vitellogenin_N: Lipop 26.2 1.4E+02 0.0031 27.1 5.3 60 10-70 523-584 (618)
205 KOG2062|consensus 26.2 6.1E+02 0.013 24.6 10.7 83 11-95 554-646 (929)
206 KOG1848|consensus 25.7 4.4E+02 0.0095 27.3 8.4 109 44-152 994-1129(1610)
207 COG5240 SEC21 Vesicle coat com 25.5 5.8E+02 0.013 24.1 13.9 54 120-179 406-462 (898)
208 COG5218 YCG1 Chromosome conden 25.4 5.8E+02 0.013 24.1 10.9 93 11-108 91-190 (885)
209 KOG1949|consensus 25.2 6.3E+02 0.014 24.4 12.6 120 56-175 184-329 (1005)
210 KOG4535|consensus 25.0 2.6E+02 0.0056 25.6 6.3 54 125-178 125-180 (728)
211 PF14663 RasGEF_N_2: Rapamycin 24.7 1.7E+02 0.0037 20.6 4.4 33 16-48 13-45 (115)
212 cd03568 VHS_STAM VHS domain fa 24.4 2.8E+02 0.0062 20.4 5.7 57 122-183 16-72 (144)
213 cd00871 PI4Ka Phosphoinositide 23.8 2.9E+02 0.0062 21.3 5.7 13 60-72 85-97 (175)
214 KOG2259|consensus 23.6 1.7E+02 0.0037 27.7 5.0 37 147-183 280-316 (823)
215 KOG1078|consensus 22.7 4.1E+02 0.0088 25.7 7.3 145 22-180 293-442 (865)
216 smart00288 VHS Domain present 22.6 3E+02 0.0065 19.8 5.6 53 122-179 16-68 (133)
217 PF12719 Cnd3: Nuclear condens 22.5 4.4E+02 0.0095 21.6 7.3 62 87-149 26-87 (298)
218 KOG0905|consensus 22.1 3.2E+02 0.0069 27.9 6.7 95 23-118 902-1013(1639)
219 PF08158 NUC130_3NT: NUC130/3N 22.1 1.6E+02 0.0034 17.9 3.2 32 42-73 14-49 (52)
220 KOG1248|consensus 22.0 8.4E+02 0.018 24.7 14.8 106 10-116 652-766 (1176)
221 COG4168 SapB ABC-type antimicr 21.9 2E+02 0.0043 23.8 4.6 82 61-147 201-288 (321)
222 PF11701 UNC45-central: Myosin 21.6 3.1E+02 0.0067 20.4 5.5 90 57-154 16-116 (157)
223 KOG4535|consensus 21.6 4.2E+02 0.009 24.4 6.9 71 84-155 103-179 (728)
224 KOG1517|consensus 21.4 2E+02 0.0043 28.8 5.2 96 56-155 567-671 (1387)
225 PF10835 DUF2573: Protein of u 20.7 1.1E+02 0.0025 20.3 2.5 20 76-95 49-68 (82)
226 PF14668 RICTOR_V: Rapamycin-i 20.1 1.8E+02 0.0039 19.0 3.4 50 106-155 5-58 (73)
No 1
>KOG2023|consensus
Probab=99.94 E-value=1.5e-27 Score=208.91 Aligned_cols=156 Identities=59% Similarity=0.951 Sum_probs=152.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
|.|+|+++.++++.++|++++|||.++|+.+...|+++...|+|..||.+|+...++.+..+|.+||++|||.++.+|..
T Consensus 3 ~~w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~ 82 (885)
T KOG2023|consen 3 MTWQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS 82 (885)
T ss_pred CCCcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC
Confidence 89999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
++++++.+||+.++.++.++++.||...+.+|..|+..++...||+++|.|.+++.+++.+++|||+..|+.|||+
T Consensus 83 ~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 83 IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983
No 2
>KOG2171|consensus
Probab=99.94 E-value=2.6e-25 Score=204.17 Aligned_cols=170 Identities=28% Similarity=0.372 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+...|.+++.+.++|||++|++||+.|+.....+.....|.+++. ++.++++||+|++++|+.+.++|+.++++.|+.
T Consensus 2 ~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~--~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILA--TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 357899999999999999999999999987776778888888885 678999999999999999999999999999999
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh------------
Q psy9906 89 IKQECLSAIGD-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE------------ 155 (191)
Q Consensus 89 ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e------------ 155 (191)
||+.||.++.. +.+.||+++|++|+.||+.+.|+.|||+++.|++.+.++|+..+|.++++|..+-+
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~ 159 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD 159 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH
Confidence 99999998775 78999999999999999999999999999999999999999999999999865554
Q ss_pred -------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 156 -------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 156 -------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
.+.+++-.+|.++++|+++++...+
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 2334455599999999999998885
No 3
>KOG1991|consensus
Probab=99.93 E-value=3.8e-25 Score=200.48 Aligned_cols=148 Identities=25% Similarity=0.373 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC--------
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-------- 80 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-------- 80 (191)
+.+.+.++|.++.+||+++|+.||++|++++++|||...|++|.. ..+.+.+|||.|+|||||+|.++|+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 367899999999999999999999999999999999999999997 46789999999999999999999975
Q ss_pred -CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 81 -FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 81 -i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
+.+++|..||++|++.+...+..+|.++..|+..|...|+|++||++++.+..++++++.+...+|+.||..+++.+
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998888754
No 4
>KOG1241|consensus
Probab=99.90 E-value=2e-23 Score=185.24 Aligned_cols=169 Identities=25% Similarity=0.397 Sum_probs=145.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-----------hhh
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-----------ARF 78 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-----------~~W 78 (191)
++.++|..++|||+++|+.||.+|++++.+ |.|...|..++. +.+.....|++||+.|||.+. .+|
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~-n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW 80 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLA-NDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW 80 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHh-ccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence 567899999999999999999999999873 667777888886 466788999999999999996 489
Q ss_pred cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCcc-ccchhhhHHHHHhhh
Q psy9906 79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYN-VCELLPVLLPILKET 156 (191)
Q Consensus 79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~-~~~~~l~~L~~l~e~ 156 (191)
..++.+.|++||++++..|..+.+...+.+++||+.||..| +.+.||+|++.|+..+.++.+. .+++.+.++.|+|++
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999 5589999999999999877544 789999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhhhhhc
Q psy9906 157 LFHHDWEIKESGILALGAIAEVNKSIG 183 (191)
Q Consensus 157 l~~~~~~~r~~~i~~~~ai~~~~~~~~ 183 (191)
+ +++ .....+=.++.||+.|+.+.+
T Consensus 161 i-~pe-vl~~~sN~iLtaIv~gmrk~e 185 (859)
T KOG1241|consen 161 I-DPE-VLEQQSNDILTAIVQGMRKEE 185 (859)
T ss_pred C-CHH-HHHHHHhHHHHHHHhhccccC
Confidence 7 333 222233357889999988764
No 5
>KOG2274|consensus
Probab=99.89 E-value=5.8e-23 Score=184.87 Aligned_cols=146 Identities=25% Similarity=0.353 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC---------
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE--------- 80 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~--------- 80 (191)
-+.++++|.+++|||+++|.+||.+|+++...++|..+|.+++. +...+.+.||+|.++||++|.+||+.
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~-~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAA-NKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHh-CcccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 35789999999999999999999999999999999999999996 46678899999999999999999986
Q ss_pred -CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 81 -FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 81 -i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
.+++.|..||+.+++++.+++.++|+.++.+|+.||..|||+.||+++|.+..+++++|.+..+++|.+|..+.++
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999777653
No 6
>KOG1992|consensus
Probab=99.88 E-value=3.2e-22 Score=178.77 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-------
Q psy9906 8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------- 80 (191)
Q Consensus 8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~------- 80 (191)
++++++.+.|.++++||+++||.||..|++.+.+++|...++.++. ..+.+.++|..|+++|||+|+++|..
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~-~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVA-NGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHh-ccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 5689999999999999999999999999999999999999999997 46679999999999999999999964
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
+.+++|+.||..|+.+|.+++..|..+++++++.|+++|||+.||+|+|+|...++++|.++..+++.+-..+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999999999999998888888754433
No 7
>KOG1993|consensus
Probab=99.88 E-value=5.1e-22 Score=176.99 Aligned_cols=142 Identities=23% Similarity=0.406 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-----CChhHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-----FPPGVSE 87 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-----i~~~~k~ 87 (191)
+++.|+++.|||..++|.||++|++.+++|||...|..|+. +.+.+.++|-+|.++|||.|.++|++ +++++|.
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l-~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~ 80 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFL-SKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD 80 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHh-ccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence 57899999999999999999999999999999999999997 46778999999999999999999986 8999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC----CccccchhhhHHHHHhh
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ----DYNVCELLPVLLPILKE 155 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~----~~~~~~~~l~~L~~l~e 155 (191)
.||.+++....++++.+..+.|.+++.|||.|||.+||+|+|+|.+.+++. |....+..+.+|-++..
T Consensus 81 ~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 81 FIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 65556666666644433
No 8
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-19 Score=159.21 Aligned_cols=144 Identities=16% Similarity=0.232 Sum_probs=130.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC---------C
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE---------F 81 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~---------i 81 (191)
+++++++.+++++|+++|+.||+.|++++++|||..++++++. ..+.+.++|+.|++||||.|.+.|+. .
T Consensus 3 ~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s-~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De 81 (970)
T COG5656 3 EELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICS-KDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE 81 (970)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHh-hccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence 6789999999999999999999999999999999999999996 46689999999999999999999987 3
Q ss_pred ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
.++.|+.++++++..+..++...|..+..++..|...||| +.|| ++|...+++.+++.++...|+.|+-.+++.
T Consensus 82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfka 156 (970)
T COG5656 82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKA 156 (970)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence 3466666666777777778999999999999999999998 8999 999999999999999999999999888874
No 9
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.81 E-value=3.9e-19 Score=160.61 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-----CChhHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-----FPPGVSE 87 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-----i~~~~k~ 87 (191)
.+..+....++|+..+|.||+.|+++++++||..-|..|.. +.+.+.++|+.|.++|||+|.++|.. +.++++.
T Consensus 6 vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~-~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v 84 (947)
T COG5657 6 VVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINL-SAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV 84 (947)
T ss_pred HHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHh-ccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch
Confidence 45566788899999999999999999999999999999987 46679999999999999999999986 6677777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
.||..++.++.+++..+.-+.|.+++-||+.|||++||+|+|+|...+++.|.++.++.+.++-.+.+
T Consensus 85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999999999888888888877744444
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.73 E-value=5.4e-17 Score=141.34 Aligned_cols=144 Identities=23% Similarity=0.275 Sum_probs=122.6
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCh---HHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-----------h
Q psy9906 12 QILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDF---NNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-----------A 76 (191)
Q Consensus 12 ~l~~lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~---~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-----------~ 76 (191)
++.++.++ .+|||++.|..||.+|++++. .|| ...+.+.+++ -+..++.|+.|++.|||.+. +
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~-~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhcc-ccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 44555555 389999999999999999987 565 4456677763 55688999999999999996 4
Q ss_pred hhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHh
Q psy9906 77 RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILK 154 (191)
Q Consensus 77 ~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~ 154 (191)
+|..++++.|++||...+.+|.++.+++.+.+++.++.||+.| +...||+|+..++..+..+.+ +.+..++-++++.|
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999 558899999999999987644 45666777889999
Q ss_pred hhc
Q psy9906 155 ETL 157 (191)
Q Consensus 155 e~l 157 (191)
|..
T Consensus 163 es~ 165 (858)
T COG5215 163 ESE 165 (858)
T ss_pred hcc
Confidence 854
No 11
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.60 E-value=1.6e-14 Score=127.37 Aligned_cols=150 Identities=17% Similarity=0.308 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+..-+-++......||+..+++|++.|.+|+..|+.|.-.-+|+. .+..++.+..|..+|.+.|+.+|.-++++.|..
T Consensus 12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~--~S~~pqskyiALs~LdklIttkWkllp~~~r~G 89 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILN--NSKLPQSKYIALSLLDKLITTKWKLLPEGMRQG 89 (1053)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHh--cccCcchhhhHHHHHHHHHHhhhhhCCcHHHHH
Confidence 455566777888899999999999999999999999999999996 567888999999999999999999999999999
Q ss_pred HHHHHHHhhCC--CCHHHH-------HHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906 89 IKQECLSAIGD--PSPLIR-------ATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 89 ik~~ll~~l~~--~~~~ir-------~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
||+.+++.+.+ ++..+| +++-..+..|++.|||.+||+++|+|++.-+ .+.+.|+..|.+|+.+.|.+|+
T Consensus 90 iRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 90 IRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHh
Confidence 99999998764 444444 5677889999999999999999999999766 5778999999999999999887
Q ss_pred Cc
Q psy9906 160 HD 161 (191)
Q Consensus 160 ~~ 161 (191)
.+
T Consensus 169 fS 170 (1053)
T COG5101 169 FS 170 (1053)
T ss_pred cc
Confidence 64
No 12
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.60 E-value=4.9e-15 Score=99.02 Aligned_cols=67 Identities=28% Similarity=0.521 Sum_probs=62.9
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc--------CCChhHHHHHHHHHHHhhC
Q psy9906 31 VQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY--------EFPPGVSEFIKQECLSAIG 98 (191)
Q Consensus 31 AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~--------~i~~~~k~~ik~~ll~~l~ 98 (191)
||++|++++.+ |+|+.+|+.++. +++.+..+|++|+++|||.|+++|. .+++++|..||+.|++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~-~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILS-SNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 999999999996 3677999999999999999999999 8999999999999999874
No 13
>KOG2020|consensus
Probab=99.48 E-value=8.2e-13 Score=123.81 Aligned_cols=151 Identities=21% Similarity=0.336 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906 8 EGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV 85 (191)
Q Consensus 8 ~~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~ 85 (191)
..-.++++++...++| +++.|.+|++.+.+++..|+.+.....|+. .+..+.+|.+|.-+|.+.|+.+|+.++.+.
T Consensus 7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~--~s~~~~~k~f~Lqlle~vik~~W~~~~~~~ 84 (1041)
T KOG2020|consen 7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILK--LSTNPILKYFALQLLENVIKFRWNSLPVEE 84 (1041)
T ss_pred hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHh--ccCCchhheeeHHHHHHHHHHhcccCCccc
Confidence 4456788888888887 899999999999999999998888888886 346778999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC--C-------CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 86 SEFIKQECLSAIGD--P-------SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 86 k~~ik~~ll~~l~~--~-------~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
|..+|+.+++.+.. + .+.++++++.+++.|+++|||+.||+++|++.+.... ++..++..|.+++.+.|+
T Consensus 85 r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEd 163 (1041)
T KOG2020|consen 85 RVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEE 163 (1041)
T ss_pred cHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHH
Confidence 99999999997642 1 3578899999999999999999999999999998884 567899999999999999
Q ss_pred cCCCc
Q psy9906 157 LFHHD 161 (191)
Q Consensus 157 l~~~~ 161 (191)
+|+.+
T Consensus 164 vf~~s 168 (1041)
T KOG2020|consen 164 VFDFS 168 (1041)
T ss_pred Hhccc
Confidence 88764
No 14
>KOG1241|consensus
Probab=98.90 E-value=1.8e-08 Score=90.89 Aligned_cols=175 Identities=19% Similarity=0.300 Sum_probs=130.8
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHH---hhc----CCChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906 13 ILQLLKESQS--PDNLIQRAVQHKLEQ---LNT----HPDFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP 82 (191)
Q Consensus 13 l~~lL~~~~s--~d~~~r~~AE~~L~~---~~~----~~~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~ 82 (191)
|..+.++... |++.+|-.|...|.+ |.+ ...--.|++++.+..+ +++..+|+.|-..|-+.+.-|+..+.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555543 588999999988874 222 1223556666666543 45788999999999999999987776
Q ss_pred hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---------C-CCC-c-----------hHHHHHHHHhhcCCc
Q psy9906 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---------L-KSW-P-----------ELLPTLNDMLDSQDY 140 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---------~-~~W-p-----------ell~~L~~~l~~~~~ 140 (191)
+...+.+-.--+.++.+.+..|.-+..+.++.|+..|. + ..= | +++|.|++.+..+++
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 66666666667777888999999999999999987651 1 112 3 899999999987532
Q ss_pred -------cc----------------cchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhchhhc
Q psy9906 141 -------NV----------------CELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLL 187 (191)
Q Consensus 141 -------~~----------------~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~~~ 187 (191)
+. .+..-.+++++++.+.++||..|++|++|||+|.+|+++--|+-+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 21 244446678888899999999999999999999999998777643
No 15
>KOG2021|consensus
Probab=98.85 E-value=1.3e-07 Score=85.61 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=119.3
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 11 IQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 11 ~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+.+-|++.+...| |...|+||-+++++++..|+.+..+..++.. .+.++.+|..+...|-..++..++..+..+.+.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~-~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLIN-ETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 3455666666666 9999999999999999999999999999975 447889999999999999998888899999999
Q ss_pred HHHHHHHhhC-----CC----CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHhhh
Q psy9906 89 IKQECLSAIG-----DP----SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILKET 156 (191)
Q Consensus 89 ik~~ll~~l~-----~~----~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~e~ 156 (191)
||..+..-++ .. ++.++++++++++.+.-.+||..||+++..+...++.+.. ...+--+++|-.+.++
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 9998877543 23 7899999999999999999999999999999999886532 2245555666444443
No 16
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.69 E-value=5.9e-08 Score=71.89 Aligned_cols=58 Identities=29% Similarity=0.500 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906 101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
++.|+++++.+++.|+.+|||+.||++++.+++.+++ ++...+.++.+|..+.|++.+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999987 578889999999999998865
No 17
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.51 E-value=3e-06 Score=75.14 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=123.9
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHH-hh---c---CCChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906 13 ILQLLKESQS--PDNLIQRAVQHKLEQ-LN---T---HPDFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP 82 (191)
Q Consensus 13 l~~lL~~~~s--~d~~~r~~AE~~L~~-~~---~---~~~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~ 82 (191)
+..+..+.++ |+..+|-.|-..|.. +. . ..+-..|++++.+..+ +.+..+.+.|-..|-+.+.-++..+.
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~ 257 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ 257 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 477889888887765 11 1 2344667777766544 44667878787888888888888777
Q ss_pred hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----CCCC---------------chHHHHHHHHhhcCC---
Q psy9906 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----LKSW---------------PELLPTLNDMLDSQD--- 139 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----~~~W---------------pell~~L~~~l~~~~--- 139 (191)
+-.-+.+-......+.+++..|..+..+.++.|+..+- ...- .|++|.|+.++..++
T Consensus 258 ~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~ 337 (858)
T COG5215 258 SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY 337 (858)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66666777777778889999999999999999988761 1122 368999999998753
Q ss_pred ----ccccchhhh----------------HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhch
Q psy9906 140 ----YNVCELLPV----------------LLPILKETLFHHDWEIKESGILALGAIAEVNKSIGL 184 (191)
Q Consensus 140 ----~~~~~~~l~----------------~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~ 184 (191)
++.--++.. ++.++++.+.+++|..|++|++|||+|.+|+...-|
T Consensus 338 ~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 338 YGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred cccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 222223333 455666678889999999999999999999976544
No 18
>KOG2022|consensus
Probab=98.41 E-value=1.1e-05 Score=74.41 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH
Q psy9906 9 GLIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE 87 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~ 87 (191)
...++.++++.+.++ +.+....+++.|++++..|..+.+-.++++ ......+|.++|+.|--.|..+|..+++++..
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ--~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~ 82 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQ--PDKSSEVQYFGALTLHDKINTRWEECPANEAV 82 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcC--CCchhHHHHHhHHHHHHHHHhhhccCChhHHH
Confidence 578899999999988 788888899999999998888888888886 23455679999999999999999999999999
Q ss_pred HHHHHHHHhhC--C-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC-c-----cccchhhhHHHHHhhhc
Q psy9906 88 FIKQECLSAIG--D-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD-Y-----NVCELLPVLLPILKETL 157 (191)
Q Consensus 88 ~ik~~ll~~l~--~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~-~-----~~~~~~l~~L~~l~e~l 157 (191)
.+|..++..+. + .++.|-++++..++..+-+.-|+.||+-+.+++..++.+. + -.++..+.+|+++-+.+
T Consensus 83 qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 83 QLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999999775 2 4677778888888888888889999999999999888652 2 12455555555554443
No 19
>KOG1410|consensus
Probab=98.14 E-value=0.00012 Score=66.33 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
++.++.=|.. +.|+..|.+||..|.++...|++..-+..++. .+..+--.++|+..|-+.+..+ ..++-+.|-.|
T Consensus 7 Le~lCk~LY~--s~D~~~R~~AE~~L~e~s~speclskCqlll~--~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldi 81 (1082)
T KOG1410|consen 7 LESLCKDLYE--STDPTARHRAEKALAELSESPECLSKCQLLLE--RGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDI 81 (1082)
T ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHHccCHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence 3444444444 45789999999999999999999999888886 3445567788888888888766 37999999999
Q ss_pred HHHHHHhhCC-C---CHHHHHHHHHHHHHHHhhCCCC------CCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcC
Q psy9906 90 KQECLSAIGD-P---SPLIRATVGILITTIASKGDLK------SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF 158 (191)
Q Consensus 90 k~~ll~~l~~-~---~~~ir~~~~~~i~~Ia~~e~~~------~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~ 158 (191)
|+.+++-+.+ . .+.+-..+.+.++.|.+.+|-+ ...|.+..+...++.++.+++-.+..+|..+.+++-
T Consensus 82 r~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN 160 (1082)
T KOG1410|consen 82 RNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Confidence 9999999987 2 4678888999999999999642 245788889999998888899999999988887653
No 20
>PRK09687 putative lyase; Provisional
Probab=98.03 E-value=0.00025 Score=58.72 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=91.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHH
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECL 94 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll 94 (191)
+++...-++|..+|..|-..|..+.. +.....+..++ ++.++.+|..|+-.|-..-.. .......=..|.
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll---~~~d~~vR~~A~~aLg~lg~~------~~~~~~a~~~L~ 96 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELC---SSKNPIERDIGADILSQLGMA------KRCQDNVFNILN 96 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHH---hCCCHHHHHHHHHHHHhcCCC------ccchHHHHHHHH
Confidence 44444467888999999999987765 66666666665 356788999988777653210 000111222333
Q ss_pred Hh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------hhcCCCcHHH
Q psy9906 95 SA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------ETLFHHDWEI 164 (191)
Q Consensus 95 ~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------e~l~~~~~~~ 164 (191)
.. +.++++.||..++.+++.+...+ +...|.+++.+...+.++++..+..+...|..+. +-+.+.++.+
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDV 175 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHH
Confidence 33 34567777777777777764433 2223566666666666666666666666654433 2345566777
Q ss_pred HHHHHHHHHHH
Q psy9906 165 KESGILALGAI 175 (191)
Q Consensus 165 r~~~i~~~~ai 175 (191)
|..|+.++|.+
T Consensus 176 R~~A~~aLg~~ 186 (280)
T PRK09687 176 RNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcC
Confidence 77777777766
No 21
>KOG2081|consensus
Probab=97.94 E-value=9.3e-05 Score=65.46 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC---CCCHHHH
Q psy9906 29 RAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG---DPSPLIR 105 (191)
Q Consensus 29 ~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~---~~~~~ir 105 (191)
..|-..|.+|++.++.|..+-.++. ...+...-.+|+..+|++|+..+..+++.+-...|+.++..+. +.++.++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~--~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILS--QKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 3578899999998899999999986 3468889999999999999999999999888999997777654 3445999
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCC
Q psy9906 106 ATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHH 160 (191)
Q Consensus 106 ~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~ 160 (191)
.+++-+|+.+|-+-+ .|.+-++++++...+..+. .-+.+.+|+.+-|+..+.
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~ 131 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDI 131 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcch
Confidence 999999999998885 7888788888777765544 567777888888876554
No 22
>PRK09687 putative lyase; Provisional
Probab=97.67 E-value=0.0016 Score=53.92 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=94.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC----CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh--hhcCCChhHHHHHHHHH
Q psy9906 20 SQSPDNLIQRAVQHKLEQLNTH----PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA--RFYEFPPGVSEFIKQEC 93 (191)
Q Consensus 20 ~~s~d~~~r~~AE~~L~~~~~~----~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~--~W~~i~~~~k~~ik~~l 93 (191)
..++|+.+|..|-..|-++... +.....|..++. .+.+..||..|+-.|-+.=.. .|. ....+.+
T Consensus 63 l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~-------~~a~~~l 133 (280)
T PRK09687 63 CSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYS-------PKIVEQS 133 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccc-------hHHHHHH
Confidence 3577999999999999998762 235666666653 456788998888877654211 121 1233345
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-----------hhhcCCCcH
Q psy9906 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL-----------KETLFHHDW 162 (191)
Q Consensus 94 l~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l-----------~e~l~~~~~ 162 (191)
...+.++++.||..++.+++.+. =++.++.|..++.++++..+..+...|..+ ..-+.+.++
T Consensus 134 ~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 134 QITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNE 206 (280)
T ss_pred HHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCh
Confidence 56666777788877777775442 156778888888777777777777777543 234556778
Q ss_pred HHHHHHHHHHHHH
Q psy9906 163 EIKESGILALGAI 175 (191)
Q Consensus 163 ~~r~~~i~~~~ai 175 (191)
.+|..|+.++|.+
T Consensus 207 ~VR~~A~~aLg~~ 219 (280)
T PRK09687 207 EIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888777754
No 23
>KOG2023|consensus
Probab=97.52 E-value=0.0043 Score=56.46 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=106.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhc-CCCh-----HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 17 LKESQSPDNLIQRAVQHKLEQLNT-HPDF-----NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 17 L~~~~s~d~~~r~~AE~~L~~~~~-~~~~-----~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
|+=.-+|.+..|..|-.-++++-- +++. -.+|-.++.-.+..++.||..-+.-|--.+.-+-+++-+.-. .|-
T Consensus 180 l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~Iv 258 (885)
T KOG2023|consen 180 LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIV 258 (885)
T ss_pred HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHH
Confidence 333345688999999999888653 2221 222323332224568889987776666666666666555443 445
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-----CCchHHHHHHHHhhcC-----------C---------------
Q psy9906 91 QECLSAIGDPSPLIRATVGILITTIASKGDLK-----SWPELLPTLNDMLDSQ-----------D--------------- 139 (191)
Q Consensus 91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-----~Wpell~~L~~~l~~~-----------~--------------- 139 (191)
+.+++...+.+..|.--+|+.+-.+|..--+. .-+.++|.|++-+.=+ +
T Consensus 259 eyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf 338 (885)
T KOG2023|consen 259 EYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF 338 (885)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence 57777777777778888888888888665221 1355666665433210 0
Q ss_pred ------------------------------cccc----------------chhhhHHHHHhhhcCCCcHHHHHHHHHHHH
Q psy9906 140 ------------------------------YNVC----------------ELLPVLLPILKETLFHHDWEIKESGILALG 173 (191)
Q Consensus 140 ------------------------------~~~~----------------~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ 173 (191)
++.+ +..-.+++++++.+++.+|.+|+++|.|+|
T Consensus 339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALG 418 (885)
T ss_pred hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHH
Confidence 1111 223334588888999999999999999999
Q ss_pred HHhhhhhh
Q psy9906 174 AIAEVNKS 181 (191)
Q Consensus 174 ai~~~~~~ 181 (191)
||+||.-+
T Consensus 419 AIAEGcM~ 426 (885)
T KOG2023|consen 419 AIAEGCMQ 426 (885)
T ss_pred HHHHHHhh
Confidence 99999754
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.45 E-value=0.0054 Score=58.58 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=85.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh---------hhhcCCChhH
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR---------ARFYEFPPGV 85 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~---------~~W~~i~~~~ 85 (191)
.++...-++|+.+|+.|-+.|..+.. ++....|...+. +.+..||..|+-.|..... .....-++..
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~V 700 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVV 700 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHH
Confidence 34444458999999999999998875 777788887773 5688899998877765532 0111111222
Q ss_pred HHHHH-----------HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 86 SEFIK-----------QECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 86 k~~ik-----------~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
|..+- ..++..|.++++.+|..+...+..+. .. +.|...+.++++..+..+...|..+.
T Consensus 701 R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~------~~----~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 701 RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVD------DV----ESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhccc------Cc----HHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 22111 12233445556666665555555431 11 22344555555555555555543332
Q ss_pred -----------hhcCCCcHHHHHHHHHHHHHHhh
Q psy9906 155 -----------ETLFHHDWEIKESGILALGAIAE 177 (191)
Q Consensus 155 -----------e~l~~~~~~~r~~~i~~~~ai~~ 177 (191)
.-+.+.++.+|.+++.++|.+-.
T Consensus 771 ~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 771 AGGAPAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred cccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 22345667777777777776643
No 25
>KOG1824|consensus
Probab=97.34 E-value=0.0046 Score=58.15 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=109.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhCCCChhHHhHHH-HHHHHhhhhhhcCCC--hhHHHHH
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLTKLTSEDEPTRSLSG-LILKNNVRARFYEFP--PGVSEFI 89 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~~~~~~~~~vRq~A~-i~LKn~i~~~W~~i~--~~~k~~i 89 (191)
-++++..||..+++++|-..|-.+.. -|.|.+++++... .++-||.=. .-||-.|. |..++ -+.-+.|
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~-----sqpk~QyLLLhSlkevi~--~~svd~~~~~v~~I 933 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIE-----SQPKRQYLLLHSLKEVIV--SASVDGLKPYVEKI 933 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHh-----cchHhHHHHHHHHHHHHH--HhccchhhhhHHHH
Confidence 45667788999999999999998875 3667777777664 334666554 46777776 54444 2222233
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------------
Q psy9906 90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK--------------- 154 (191)
Q Consensus 90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~--------------- 154 (191)
=.-+.+-........|+.+++|++.++-.|+ ..|+|.|-..+.+++++++-.+..+.+|.-
T Consensus 934 W~lL~k~cE~~eegtR~vvAECLGkL~l~ep----esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~i 1009 (1233)
T KOG1824|consen 934 WALLFKHCECAEEGTRNVVAECLGKLVLIEP----ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQI 1009 (1233)
T ss_pred HHHHHHhcccchhhhHHHHHHHhhhHHhCCh----HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHH
Confidence 3344444444567779999999999999983 359999999999998877766666543321
Q ss_pred -h---hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 155 -E---TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 155 -e---~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
+ -+.++|.++|..|+.++-+.+.+..
T Consensus 1010 g~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1010 GDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 1 2457899999999998888766543
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.32 E-value=0.017 Score=55.16 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=81.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhh-------hhhhcCCChhHHHHH----
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV-------RARFYEFPPGVSEFI---- 89 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i-------~~~W~~i~~~~k~~i---- 89 (191)
-++|..+|..|=..|.++.........|...+. +.++.+|..|.-.|...- ...-..-++..|...
T Consensus 662 ~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL 738 (897)
T PRK13800 662 GDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRAL 738 (897)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 456788888888888777442223345555553 356678887776665321 000011111111100
Q ss_pred -----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh----------
Q psy9906 90 -----KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------- 154 (191)
Q Consensus 90 -----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------- 154 (191)
-..|+.++.++++.||..++..+..+...+ +.-++.|..+++++++..+..++..|..+.
T Consensus 739 ~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~ 813 (897)
T PRK13800 739 VSVDDVESVAGAATDENREVRIAVAKGLATLGAGG-----APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAAT 813 (897)
T ss_pred hcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 023444556677888888888877775432 223556666666666666666666653322
Q ss_pred hhcCCCcHHHHHHHHHHHHHH
Q psy9906 155 ETLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 155 e~l~~~~~~~r~~~i~~~~ai 175 (191)
+.+.+++|.+|.+|+.++|.+
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhc
Confidence 234556677777776666654
No 27
>KOG2171|consensus
Probab=97.23 E-value=0.025 Score=54.15 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhc--CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 15 QLLKESQS-PDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 15 ~lL~~~~s-~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
++|..+++ +...+|+.--...-++.+ -|+-|+-|+..+. ..++.+++.|..|..+|.......=....+- -..++
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHH
Confidence 34444443 455677665555555543 2444555544443 3457788999999999977665332222211 13566
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCC--CCCCc---hHHHHHHHHh
Q psy9906 91 QECLSAIGDPSPLIRATVGILITTIASKGD--LKSWP---ELLPTLNDML 135 (191)
Q Consensus 91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~--~~~Wp---ell~~L~~~l 135 (191)
.-+.++|.+++..||.....+++.++..-. ...|+ +++|.+++.+
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl 211 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL 211 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh
Confidence 677778888666688888888888877653 33343 4566555444
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=96.91 E-value=0.051 Score=50.94 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc--------------------
Q psy9906 21 QSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY-------------------- 79 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~-------------------- 79 (191)
.++|...|+.|-..+-.+.. --+....+.+++...++.+..+|.+.-+++.++.+.+=.
T Consensus 42 ~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHH
Confidence 45577777777777665543 234455555555444566888888888888877652110
Q ss_pred ---------C-CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhh
Q psy9906 80 ---------E-FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLP 147 (191)
Q Consensus 80 ---------~-i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l 147 (191)
. -.++.-+.+-..+.+++.+.++.||+.++.|+.++.+.++. .-+ ++++.|.+++.++|+..+..|+
T Consensus 122 RaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 122 RALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHHHHHhcCCCccHHHHHH
Confidence 0 13444555666667778889999999999999999988742 212 4667788888888888888888
Q ss_pred hHHHHHhh
Q psy9906 148 VLLPILKE 155 (191)
Q Consensus 148 ~~L~~l~e 155 (191)
.+|..+++
T Consensus 201 ~aL~eI~~ 208 (746)
T PTZ00429 201 AIVCEVND 208 (746)
T ss_pred HHHHHHHH
Confidence 88877765
No 29
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.79 E-value=0.0024 Score=34.74 Aligned_cols=30 Identities=43% Similarity=0.536 Sum_probs=24.8
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 149 LLPILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 149 ~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
+++.+.+-+.+++|++|.+|+.++|.|++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 356777778889999999999999999875
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.70 E-value=0.032 Score=49.54 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=82.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHh
Q psy9906 19 ESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSA 96 (191)
Q Consensus 19 ~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~ 96 (191)
...+.|...|+-+.-.+..+.. +|+.......-+. +..+.++.+|-+|.-.+=+.. +++.-+.+-..+.+.
T Consensus 50 l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 50 LISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp TCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence 3335566666666666666554 2332222222221 123445556666555554432 466667777788888
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhCCCCCCch-HHHHHHHHhhcCCccccchhhhHHHHH
Q psy9906 97 IGDPSPLIRATVGILITTIASKGDLKSWPE-LLPTLNDMLDSQDYNVCELLPVLLPIL 153 (191)
Q Consensus 97 l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpe-ll~~L~~~l~~~~~~~~~~~l~~L~~l 153 (191)
+.++++.||++++.++..+.+.+ |+.-+. +++.+.+++.++|+..+.+|+.++..+
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 88888999999999999999886 444344 688888888888877777777777666
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.53 E-value=0.011 Score=39.40 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=56.7
Q ss_pred HHHHhh-CCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC-C
Q psy9906 92 ECLSAI-GDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH-H 160 (191)
Q Consensus 92 ~ll~~l-~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~-~ 160 (191)
.|++.| .++++.+|..++.+++.+. =|+.++.|.++++++++..+..+...|..+.+ .+.+ .
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-S
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCC
Confidence 577777 6789999998888888332 14899999999998898888888887755543 3444 3
Q ss_pred cHHHHHHHHHHHH
Q psy9906 161 DWEIKESGILALG 173 (191)
Q Consensus 161 ~~~~r~~~i~~~~ 173 (191)
++.+|.+++.++|
T Consensus 76 ~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 76 DEVVREAAAEALG 88 (88)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcC
Confidence 5677999988876
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.47 E-value=0.048 Score=36.26 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
.|++.|.+ ++|+.+|..|-..|.++.. +.....|...+. +.++.+|..|+..|.+. .. .....
T Consensus 3 ~L~~~l~~--~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i----------~~-~~~~~ 65 (88)
T PF13646_consen 3 ALLQLLQN--DPDPQVRAEAARALGELGD-PEAIPALIELLK---DEDPMVRRAAARALGRI----------GD-PEAIP 65 (88)
T ss_dssp HHHHHHHT--SSSHHHHHHHHHHHHCCTH-HHHHHHHHHHHT---SSSHHHHHHHHHHHHCC----------HH-HHTHH
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHc---CCCHHHHHHHHHHHHHh----------CC-HHHHH
Confidence 34444433 8899999999999997765 678888888873 57889999999999865 11 23455
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHH
Q psy9906 92 ECLSAIGD-PSPLIRATVGILIT 113 (191)
Q Consensus 92 ~ll~~l~~-~~~~ir~~~~~~i~ 113 (191)
.|.+.+.+ .+..+|..+..+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 77777776 56777888777664
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.30 E-value=0.16 Score=40.24 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhh---cCCChh-HHH
Q psy9906 14 LQLLKESQSPDNLIQRAVQHKLEQLNTHPDF-NNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARF---YEFPPG-VSE 87 (191)
Q Consensus 14 ~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~-~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W---~~i~~~-~k~ 87 (191)
-.+|..+.++...+|..|...|..+-..-++ ...+..++. ..++-++.+|..++.++...+...+ ..+... .-.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 3455666777888999999999998886552 333233332 2356688999999999999998766 223222 235
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML 135 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l 135 (191)
.+-..+..++.++++.+|..+-.++..+.++ ||+--..+++.+
T Consensus 177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~-----~~~~a~~~~~~l 219 (228)
T PF12348_consen 177 QLVKALVKLLSDADPEVREAARECLWALYSH-----FPERAESILSML 219 (228)
T ss_dssp HHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH-----H-HHH-------
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----CCHhhccchhcc
Confidence 6777888899999999999999999999765 566555555444
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.10 E-value=0.17 Score=45.41 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHhhcC-------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHh
Q psy9906 24 DNLIQRAVQHKLEQLNTH-------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSA 96 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~-------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~ 96 (191)
+.+....+-..|..+-.. +++..+|..-+ ++.++.||.++.-.+++.+...=....--....+-..++.+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL---~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~ 127 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGL---THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQC 127 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHH
Confidence 455555555566654431 33444444444 46788999999999998886431111101112345578888
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhCCCCC---CchHHHHHHHHhhcCCccccchhhh--------------------HHHHH
Q psy9906 97 IGDPSPLIRATVGILITTIASKGDLKS---WPELLPTLNDMLDSQDYNVCELLPV--------------------LLPIL 153 (191)
Q Consensus 97 l~~~~~~ir~~~~~~i~~Ia~~e~~~~---Wpell~~L~~~l~~~~~~~~~~~l~--------------------~L~~l 153 (191)
+.+++..+.+.++.++..++++...-+ =+++++.|.+++..++...+.-++. +++.+
T Consensus 128 L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l 207 (503)
T PF10508_consen 128 LRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL 207 (503)
T ss_pred HcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH
Confidence 899999999999999999998762211 1234788888887744333222222 23333
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHhhhhhhhchhh
Q psy9906 154 KETLFHHDWEIKESGILALGAIAEVNKSIGLKL 186 (191)
Q Consensus 154 ~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~~ 186 (191)
.+.+.+.|..+|..++..++.+++ .+.|++.
T Consensus 208 l~eL~~dDiLvqlnalell~~La~--~~~g~~y 238 (503)
T PF10508_consen 208 LKELDSDDILVQLNALELLSELAE--TPHGLQY 238 (503)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHc--ChhHHHH
Confidence 445677889999999999999988 4444443
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.08 E-value=0.016 Score=40.36 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=68.7
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE----FIKQECLSAIGDPSPLIRATVGILITTIAS 117 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~----~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~ 117 (191)
.|....+..++. +.+..+|..|...|.+..... ++..+. .+-+.+++.|.++++.++.....++..++.
T Consensus 6 ~~~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 6 AGGLPALVSLLS---SSDENVQREAAWALSNLSAGN----NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred cCChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 467778888875 235789999999998877542 122222 233456666777899999999999999987
Q ss_pred hCCCC---CC-chHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 118 KGDLK---SW-PELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 118 ~e~~~---~W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
..++. -+ .++++.+.+.+...+...++.++.+|.-++
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66321 12 235666666666555555555555554443
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=95.81 E-value=0.81 Score=43.10 Aligned_cols=163 Identities=13% Similarity=0.209 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
..+-.+...+.+||+-+|--|=..|-.+.. |+...++..-+.. .++.++-||..|++.+-+.....-..+. ...+
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~---~~~~ 180 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY---QQDF 180 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc---ccch
Confidence 444555556677788888888777776655 6666655444322 2455778888888887776553322111 1224
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc---hHHHHHH---------------HHhhcCCccccchhhhHHH
Q psy9906 90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP---ELLPTLN---------------DMLDSQDYNVCELLPVLLP 151 (191)
Q Consensus 90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp---ell~~L~---------------~~l~~~~~~~~~~~l~~L~ 151 (191)
.+.|.+.|.++++.+...+..++..|...+ |+.|. ..+..++ +++....+....-+..++.
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~-~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYG-SEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLT 259 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhC-chhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 455666778888888877777777776544 22231 1122222 2222222222233455666
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 152 ILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 152 ~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
.+...+.+.+-.+-.+|++++..+...
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 666677778888888888887777654
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.65 E-value=0.28 Score=43.53 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
..++.+++.... +|...++.+=..|-.+... .+....+..++....+.+...|.++-+++....... ++.--.
T Consensus 6 ~~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-----~~~~~l 79 (526)
T PF01602_consen 6 SQELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHED-----PELLIL 79 (526)
T ss_dssp HHHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-----HHHHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-----hhHHHH
Confidence 456777777665 6777888888877766542 233333444443335678889999988887765533 444556
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------------
Q psy9906 89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE------------- 155 (191)
Q Consensus 89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e------------- 155 (191)
+-+.+.+-|.++++.+|..+-.+++.|.. ++-.|.+++.+.+++.++++..+..|..++..+.+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~ 156 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPK 156 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 66777788889999999777777777773 44568899999999999988777777666633332
Q ss_pred ---hcCCCcHHHHHHHHHHHHHH
Q psy9906 156 ---TLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 156 ---~l~~~~~~~r~~~i~~~~ai 175 (191)
-+.+.++.++.+|+.++..|
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHH
Confidence 23446788999998888888
No 38
>KOG0166|consensus
Probab=95.64 E-value=0.16 Score=45.39 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
..++++|... -++..+-+|-=.|.++.. ..|....+..++. +.+..+|-.|.--|-|.....
T Consensus 112 ~~lV~~l~~~--~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~---s~~~~v~eQavWALgNIagds--- 183 (514)
T KOG0166|consen 112 PRLVEFLSRD--DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS---SPSADVREQAVWALGNIAGDS--- 183 (514)
T ss_pred HHHHHHHccC--CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc---CCcHHHHHHHHHHHhccccCC---
Confidence 3444444422 224556666666665542 2355566666653 456677877777777766532
Q ss_pred CChhHHHHHHH-----HHHHhhCCCCH-HHHHHHHHHHHHHHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHH
Q psy9906 81 FPPGVSEFIKQ-----ECLSAIGDPSP-LIRATVGILITTIASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 81 i~~~~k~~ik~-----~ll~~l~~~~~-~ir~~~~~~i~~Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
+..|.++.+ .|+..+..+.+ .+.+.+..+++.+++.- ++-.| ..++|.|..++.+.|++...-+.-.+
T Consensus 184 --~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 184 --PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred --hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555544 34444444444 67788999999999997 55455 46899999999999988877777778
Q ss_pred HHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 151 PILKE--------------------TLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 151 ~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
+|+.+ -+.+++..++..|++++|.|+.|.+.
T Consensus 262 syLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 262 SYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 88875 13445677888999999999988764
No 39
>KOG2956|consensus
Probab=95.37 E-value=1.5 Score=38.78 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=101.9
Q ss_pred CCCChHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC-------hHHHHHHHHhhh-CCCChhHHhHHHHHHHH
Q psy9906 3 WQPQEEG-LIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPD-------FNNYLIFVLTKL-TSEDEPTRSLSGLILKN 72 (191)
Q Consensus 3 ~~p~~~~-~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~-------~~~~L~~il~~~-~~~~~~vRq~A~i~LKn 72 (191)
|+|+.-+ ...+.+.|.++-+. ..+.|+.|-.+|..+....+ |...|..++... .+.+..+|.+|.=.|+.
T Consensus 277 ~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ 356 (516)
T KOG2956|consen 277 LTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE 356 (516)
T ss_pred CCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 5555443 34456666666554 56788889888887665331 444444444332 34678899999999999
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906 73 NVRARFYEFPPGVSEFIKQECLSAIGDPS-PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLP 151 (191)
Q Consensus 73 ~i~~~W~~i~~~~k~~ik~~ll~~l~~~~-~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~ 151 (191)
..+..=..+-+..-..| ..+|++=.+++ ..+|.+.-.|...++.+++...=..+-| ++...|+...-.++..+.
T Consensus 357 ml~~Q~~~l~DstE~ai-~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~----~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 357 MLTNQPARLFDSTEIAI-CKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISP----LILTADEPRAVAVIKMLT 431 (516)
T ss_pred HHHhchHhhhchHHHHH-HHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhh----HHhcCcchHHHHHHHHHH
Confidence 99876554434443344 46777767654 5555555666777788875444333333 333334333333343444
Q ss_pred HHhh--------------------hcCCCcHHHHHHHHHHHHHHhh
Q psy9906 152 ILKE--------------------TLFHHDWEIKESGILALGAIAE 177 (191)
Q Consensus 152 ~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~ 177 (191)
.+++ .+-+.+=.+|.++|.++-||+.
T Consensus 432 kl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 432 KLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 4443 2334567899999988877653
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.24 E-value=1 Score=34.55 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC
Q psy9906 24 DNLIQRAVQHKLEQLNT-HPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS 101 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~ 101 (191)
|+.+|..+--.+-.+.. .|+. -.++-.+.....+.++.||..|.+.|.+.+...+... |..+=..++.++.+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHcCCC
Confidence 46778888888877664 4553 2333333333456789999999999999998765433 2334346667788999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC------ccccchhhhHHHHHhhhc
Q psy9906 102 PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD------YNVCELLPVLLPILKETL 157 (191)
Q Consensus 102 ~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~------~~~~~~~l~~L~~l~e~l 157 (191)
+.||..+..++..+.....|+.-...++.++..+.+.. ....+--..++.++-+.+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 99999999999999999655555566666666555432 122333344555555544
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.23 E-value=0.53 Score=42.24 Aligned_cols=137 Identities=21% Similarity=0.146 Sum_probs=92.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
-+..+..+|++.+|.-|=.++..... .++....++..+ .+.+..+...|+-.|++..+.. ..+..=
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L---~~~d~~Va~~A~~~L~~l~~~~-~~~~~l 156 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL---RDPDLSVAKAAIKALKKLASHP-EGLEQL 156 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH---cCCcHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence 34455667899999998887776533 234455555555 4578899999999999988742 111000
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCC-chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSW-PELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
....+...|...+..++..+|-.+.++++.|++... ...+ .++++.++..+.+.|.-.+..++.+|..+.+
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 001115556666667788889889999999998862 2222 2599999999998776666777777766655
No 42
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.18 E-value=0.63 Score=43.63 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchH--HHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPEL--LPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpel--l~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
.+=..+.+++.++++.||+.++.||..+.+.+ ++-.+++ ...+..++.++|+..+..|+..|..++++
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 33445556677789999999999999999998 3444544 44455666788999999999999888876
No 43
>KOG1242|consensus
Probab=94.85 E-value=1.2 Score=40.42 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CCh--HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDF--NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~--~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k 86 (191)
+.-+..+|.+..+.++.+|..|....+..... +.+ -..|...+.......=+.++.+.-+|.......-..++.-..
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp 294 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP 294 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence 55677788888888999999999888876652 222 122222221111112245555555665444433222333333
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~ 139 (191)
+.|+ .+.+.|-++.+.+|++...++..+........=.-++|.|++.+++++
T Consensus 295 ~iiP-~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 295 DLIP-VLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred HhhH-HHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 3333 566667778888888888888888877644444457777777777664
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.57 E-value=0.17 Score=35.25 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL---KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
.+.|=..++.++.+++.+||-.+++++..|++.-.. ...+++++.|...+.++|++.+.++-.+-+.++
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 345555788889999999999999999999887633 245778888888888888877666644445544
No 45
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.46 E-value=1 Score=30.91 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCch-HHHHHHHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPE-LLPTLNDM 134 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpe-ll~~L~~~ 134 (191)
.+..+++|--|...|++.|.++= .+......|-.-++..|.++++.|--.+..+++.++... |+ .++.|++.
T Consensus 13 ~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-----p~~vl~~L~~~ 85 (92)
T PF10363_consen 13 NDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-----PDEVLPILLDE 85 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-----hHHHHHHHHHH
Confidence 45677899999999999999764 455666677778888899999999999999999999776 44 77777766
Q ss_pred hhcC
Q psy9906 135 LDSQ 138 (191)
Q Consensus 135 l~~~ 138 (191)
-.+.
T Consensus 86 y~~~ 89 (92)
T PF10363_consen 86 YADP 89 (92)
T ss_pred HhCc
Confidence 5543
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.20 E-value=0.65 Score=35.63 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=67.0
Q ss_pred hhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC
Q psy9906 60 EPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 60 ~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~ 139 (191)
+.+|.-+.+.+--...++ . ..-+..-..+...|.++++.||..+..+++.+...|+-.-.+.++..+...+.++|
T Consensus 2 ~~vR~n~i~~l~DL~~r~-~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY-P----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHHHhC-c----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 456666666665544443 2 22223344778889999999999999999999999976666778799999998888
Q ss_pred ccccchhhhHHHHHhh
Q psy9906 140 YNVCELLPVLLPILKE 155 (191)
Q Consensus 140 ~~~~~~~l~~L~~l~e 155 (191)
+..+..|-.+|..+-.
T Consensus 77 ~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 77 PEIRSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888744443
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.06 E-value=0.35 Score=38.20 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCChhHHhHHHHHHHHhhhhh-hcCCChhHHHHHH---HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC---CCchHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRAR-FYEFPPGVSEFIK---QECLSAIGDPSPLIRATVGILITTIASKGDLK---SWPELL 128 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~-W~~i~~~~k~~ik---~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~---~Wpell 128 (191)
++.+=..|.-|...|++.+..+ =....+..-..+| ..+...+.+....+...++.++..++...... .-+.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3445566777777777777655 1112344444555 34444444445556666677777777665221 123466
Q ss_pred HHHHHHhhcCCccccchhhhHHHHHhh---------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 129 PTLNDMLDSQDYNVCELLPVLLPILKE---------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 129 ~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
|.|+..+.+++...++.+..+|..+++ ...+-++.+|..++..+..+++...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 666666666554444555555444433 2233456677766666666554443
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.84 E-value=1.2 Score=39.03 Aligned_cols=107 Identities=18% Similarity=0.085 Sum_probs=61.7
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP 100 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~ 100 (191)
.+++.++|..+-..|..++. ++....|...+. +.++.+|-.+.-.+.+. . .+ --..++..|.++
T Consensus 96 ~d~~~~vr~aaa~ALg~i~~-~~a~~~L~~~L~---~~~p~vR~aal~al~~r---~-----~~----~~~~L~~~L~d~ 159 (410)
T TIGR02270 96 QAGPEGLCAGIQAALGWLGG-RQAEPWLEPLLA---ASEPPGRAIGLAALGAH---R-----HD----PGPALEAALTHE 159 (410)
T ss_pred cCCCHHHHHHHHHHHhcCCc-hHHHHHHHHHhc---CCChHHHHHHHHHHHhh---c-----cC----hHHHHHHHhcCC
Confidence 34566677777777766655 666666777663 34556665444333220 0 00 012455566677
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
++.+|.....+++.+. +++.++.|...+.+.|+..+.++...+
T Consensus 160 d~~Vra~A~raLG~l~-------~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 160 DALVRAAALRALGELP-------RRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred CHHHHHHHHHHHHhhc-------cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777777777766654 345566666666666666655555444
No 49
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.59 E-value=4.6 Score=42.22 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+++|. +++..+|++|--.|-++..+ .|....|+.++. +.+..+|.-|+-.|.|.+...
T Consensus 490 IP~LV~LL~---s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~---sgd~~~q~~Aa~AL~nLi~~~-- 561 (2102)
T PLN03200 490 IPPLVQLLE---TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK---NGGPKGQEIAAKTLTKLVRTA-- 561 (2102)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhcc--
Confidence 344555553 67889999988888876542 355666777774 347788888888888876631
Q ss_pred CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-------CCCchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906 80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-------KSWPELLPTLNDMLDSQDYNVCELLPVLLPI 152 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-------~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~ 152 (191)
+...++ .++..|...++.++..+..+++.|...-.. ..=++.++.|.+++++++...++-+..+|.-
T Consensus 562 -----d~~~I~-~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 562 -----DAATIS-QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLAD 635 (2102)
T ss_pred -----chhHHH-HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 223443 466777777777776666666666442210 0124788999999999988887777777744
Q ss_pred Hhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 153 LKE--------------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 153 l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
++. .+.+.+.+++..+..+++++..+..
T Consensus 636 L~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 636 IFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 432 2344567788888888888775433
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.56 E-value=0.24 Score=26.60 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9906 91 QECLSAIGDPSPLIRATVGILITTIASK 118 (191)
Q Consensus 91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~ 118 (191)
..+++.+.++++.||..++.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4567777788888888888888888764
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.55 E-value=1.1 Score=30.78 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..+++++. ++++..|..|=..|..+... .+....++.++. +.+..+|..|.-.|.|.......
T Consensus 9 i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 9 LPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred hHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccCcHH
Confidence 344455553 44678888888887776653 366777777774 35788999999999998764421
Q ss_pred CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906 80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia 116 (191)
....-.+..+-..+++.+.+.+..++..+..++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1111111123346666677788899999999988775
No 52
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.41 E-value=3.1 Score=34.79 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCcccc
Q psy9906 93 CLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC 143 (191)
Q Consensus 93 ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~ 143 (191)
+.+.+......+|...+..+..+.... +++.+.+...+.+++...+
T Consensus 185 l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 185 LIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHH
Confidence 334444556677777777777776554 4455555555555554433
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.84 E-value=4.9 Score=37.89 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHH-HHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCH
Q psy9906 24 DNLIQRAVQHKL-EQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSP 102 (191)
Q Consensus 24 d~~~r~~AE~~L-~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~ 102 (191)
+...|++|-..+ .++..-.+...++.+++..-.+.+..+|.+.=.||+++-+.+ ++.--..-+.+.+-+.++++
T Consensus 32 n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-----P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-----PELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHhhccCCCH
Confidence 344555555554 466655567777777775444556666666666665544322 33333334477778889999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---h--------------cCCCcHHHH
Q psy9906 103 LIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---T--------------LFHHDWEIK 165 (191)
Q Consensus 103 ~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---~--------------l~~~~~~~r 165 (191)
.+|..+-..++.| .-+.-|+.+++.+.+++.++++..+..|..++..+.+ + +++++..+.
T Consensus 107 ~iR~~AlR~ls~l---~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi 183 (757)
T COG5096 107 EIRGFALRTLSLL---RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVI 183 (757)
T ss_pred HHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHH
Confidence 9996655555544 4455789999999999999988777777777644432 1 245566666
Q ss_pred HHHHHHHHHH
Q psy9906 166 ESGILALGAI 175 (191)
Q Consensus 166 ~~~i~~~~ai 175 (191)
..|+.++.-|
T Consensus 184 ~nAl~sl~~i 193 (757)
T COG5096 184 ANALASLAEI 193 (757)
T ss_pred HHHHHHHHHh
Confidence 6665554443
No 54
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.74 E-value=5 Score=33.30 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=104.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhc-CC----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh-hhcCCCh-------h
Q psy9906 18 KESQSPDNLIQRAVQHKLEQLNT-HP----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA-RFYEFPP-------G 84 (191)
Q Consensus 18 ~~~~s~d~~~r~~AE~~L~~~~~-~~----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~-~W~~i~~-------~ 84 (191)
.+..++|+.+|+.|-.-|--+.- +. ++...+...+. ..+..+|-.|.-.+=..+.. ....++. .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~---~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ---KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 46678899999999999886553 12 24444555553 34778888776444333332 2222222 2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcH--
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW-- 162 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~-- 162 (191)
....+-+.+.+.+.+.++.++..+++.++++.-.+--..||+++..|+-..=++........-.||.++.+.+-....
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 335666678888888888999999999999998885444899999988666655433344556677777776654443
Q ss_pred --HHHHHHHHHHHHHhhhhhh
Q psy9906 163 --EIKESGILALGAIAEVNKS 181 (191)
Q Consensus 163 --~~r~~~i~~~~ai~~~~~~ 181 (191)
...++.+.++..+.+..+.
T Consensus 191 Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 3444555566666665543
No 55
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.72 E-value=4.4 Score=32.56 Aligned_cols=128 Identities=19% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHhhcCC-ChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCC---hhHHHHHHHHHHHhh
Q psy9906 23 PDNLIQRAVQHKLEQLNTHP-DFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFP---PGVSEFIKQECLSAI 97 (191)
Q Consensus 23 ~d~~~r~~AE~~L~~~~~~~-~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~---~~~k~~ik~~ll~~l 97 (191)
++++.....=..|-.+..+. ......++++.... +.....+.++.-++ ..-|..-+ +.-+..+....++..
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl----~~lw~~~~r~f~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLL----TLLWKANDRHFPFLQPLLLLLILRIP 88 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHH----HHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 45666666666676666544 33333333333222 22233333333222 22343211 333333333333322
Q ss_pred ---CCC--CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh-hcCCccccchhhhHHHHHhh
Q psy9906 98 ---GDP--SPLIRATVGILITTIASKGDLKSWPELLPTLNDML-DSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 98 ---~~~--~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l-~~~~~~~~~~~l~~L~~l~e 155 (191)
.+. .....-..+..+..|++..+ +.|+++++.+.+.+ ++.++...-.++..+..+|+
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICCSRP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 112 23444555688888998884 49999999999999 66677777888888888886
No 56
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.54 E-value=0.12 Score=40.17 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhh-C---CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 103 LIRATVGILITTIASK-G---DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 103 ~ir~~~~~~i~~Ia~~-e---~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
++|-.+-.|+..+++. + ..+.|+.|+|+- ..+ ........+.++ ++|++..+|.+|+.++.++.+|
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~--~~~~~~sLlt~i------l~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQ--GRPATPSLLTCI------LKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCc--CCCCCcchhHHH------HcCCchhHHHHHHHHHHHHHHc
Confidence 3688889999999999 6 347899999987 111 111222222222 3468999999999999999999
Q ss_pred hhhh
Q psy9906 179 NKSI 182 (191)
Q Consensus 179 ~~~~ 182 (191)
..+.
T Consensus 71 sk~~ 74 (182)
T PF13251_consen 71 SKPF 74 (182)
T ss_pred cHHH
Confidence 7654
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.54 E-value=6.8 Score=34.34 Aligned_cols=131 Identities=15% Similarity=-0.056 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC
Q psy9906 22 SPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS 101 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~ 101 (191)
.++.+++..|--.|..... +.....|+..+. +.+..+|..++--|- |... ......|+..+.+.+
T Consensus 66 d~~~ev~~~aa~al~~~~~-~~~~~~L~~~L~---d~~~~vr~aaa~ALg------~i~~-----~~a~~~L~~~L~~~~ 130 (410)
T TIGR02270 66 ADEPGRVACAALALLAQED-ALDLRSVLAVLQ---AGPEGLCAGIQAALG------WLGG-----RQAEPWLEPLLAASE 130 (410)
T ss_pred CCChhHHHHHHHHHhccCC-hHHHHHHHHHhc---CCCHHHHHHHHHHHh------cCCc-----hHHHHHHHHHhcCCC
Confidence 3566777765555543333 444677777774 456678888887774 3211 234457888888899
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCCCcHHHHHHHHHHH
Q psy9906 102 PLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFHHDWEIKESGILAL 172 (191)
Q Consensus 102 ~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~~~~~~r~~~i~~~ 172 (191)
+.+|..+..+++. +. ++-.+.+...+++.++..+..+..+|..+.. .+.+.+..+|.+|+.++
T Consensus 131 p~vR~aal~al~~---r~-----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 131 PPGRAIGLAALGA---HR-----HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred hHHHHHHHHHHHh---hc-----cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998655544444 22 2234677777888888888999999877654 45678899999998877
Q ss_pred HHH
Q psy9906 173 GAI 175 (191)
Q Consensus 173 ~ai 175 (191)
+-+
T Consensus 203 ~~l 205 (410)
T TIGR02270 203 LLA 205 (410)
T ss_pred HHc
Confidence 655
No 58
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.44 E-value=5.5 Score=41.68 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=53.5
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
.+....|..++. +.+..++.-|+-.|-|....+=.....-.....=..++..|...+..+++.++.+++.+++....
T Consensus 608 ~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 608 NDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred cccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 455666777764 34667777777666666542211111111111122344445555566666666666666653322
Q ss_pred CCC-----chHHHHHHHHhhcCCccccchhhhHH
Q psy9906 122 KSW-----PELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 122 ~~W-----pell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
++. -+.++-|+++++++|....+.++..|
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 221 23455566666665555555555554
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.15 E-value=6.8 Score=33.77 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=110.6
Q ss_pred CCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHH
Q psy9906 3 WQPQEEG-LIQILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLIL 70 (191)
Q Consensus 3 ~~p~~~~-~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~L 70 (191)
|.|.++. ..+|-++..+.+|.|-+..-+|...+..+.. .| |..+-+.+++.+ .+..-...=|+=.|
T Consensus 62 ~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~--~q~~mlqfEAaWal 139 (526)
T COG5064 62 FIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE--IQRDMLQFEAAWAL 139 (526)
T ss_pred cCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh--cchhHHHHHHHHHH
Confidence 4455544 6788999999999999999999888887653 22 333444454421 11111222222223
Q ss_pred HHhhh--------------------------------hhhc--C---CChhHHHHHH-----HHHHHhhCCC--CHHHHH
Q psy9906 71 KNNVR--------------------------------ARFY--E---FPPGVSEFIK-----QECLSAIGDP--SPLIRA 106 (191)
Q Consensus 71 Kn~i~--------------------------------~~W~--~---i~~~~k~~ik-----~~ll~~l~~~--~~~ir~ 106 (191)
-|.-. .-|- . -++..|.+|- +.+|..+.++ +-++-+
T Consensus 140 TNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR 219 (526)
T COG5064 140 TNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR 219 (526)
T ss_pred hhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH
Confidence 22221 1232 1 2344444433 2344444443 235556
Q ss_pred HHHHHHHHHHhhC-CCCCCch---HHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcH
Q psy9906 107 TVGILITTIASKG-DLKSWPE---LLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDW 162 (191)
Q Consensus 107 ~~~~~i~~Ia~~e-~~~~Wpe---ll~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~ 162 (191)
.+...++.+++-- +|-.|.. .+|.|..++-+.|++..--|+-.++|+.+ -+.+++-
T Consensus 220 n~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 220 NATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred HhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccc
Confidence 6788999999887 7788975 68889999988888776666667777764 3456677
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy9906 163 EIKESGILALGAIAEVNKS 181 (191)
Q Consensus 163 ~~r~~~i~~~~ai~~~~~~ 181 (191)
.++.-+++.+|.|+.|.+.
T Consensus 300 ~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred cccCHHHHhhcCeeecCcc
Confidence 7888899999999988764
No 60
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.54 E-value=9.2 Score=31.91 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQE 92 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ 92 (191)
+-.++...-++|..+|..|-..|.++.. ......+..++. +.+..+|..|+-.|.+.-. ++ --..
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-~~av~~l~~~l~---d~~~~vr~~a~~aLg~~~~-------~~----a~~~ 109 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS-EEAVPLLRELLS---DEDPRVRDAAADALGELGD-------PE----AVPP 109 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch-HHHHHHHHHHhc---CCCHHHHHHHHHHHHccCC-------hh----HHHH
Confidence 3344444455678888888888777665 567777777764 4566788888774433321 11 1113
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHHH
Q psy9906 93 CLSAIG-DPSPLIRATVGILITTIA 116 (191)
Q Consensus 93 ll~~l~-~~~~~ir~~~~~~i~~Ia 116 (191)
+++.+. +++..+|..++.++..+.
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 334444 355666655555555543
No 61
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.96 E-value=5.3 Score=36.40 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k 86 (191)
....+|.++-. +..+.+=|-+.+-.|-+ .|+ ....++++.. ..+..||..|.=-|-..-+ -.++--
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck-----~~~~~v 94 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE---DEDVQIRKQAIKGLPQLCK-----DNPEHV 94 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT----SSHHHHHHHHHHGGGG-------T--T-H
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhHHHHHH-----hHHHHH
Confidence 33444444432 34444445555554443 243 3344444442 3455565554332222111 112333
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~ 120 (191)
.-|-+.|.+.|.+.++.-...+-.++..+.+.|+
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~ 128 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP 128 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Confidence 4455555555665566666666666666666663
No 62
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.18 E-value=15 Score=32.21 Aligned_cols=160 Identities=13% Similarity=0.193 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCCChHHHHHHHHhh----h-CCCChhHHhHHHHHHHHhhhhhhc-CCCh
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLN-THPDFNNYLIFVLTK----L-TSEDEPTRSLSGLILKNNVRARFY-EFPP 83 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~-~~~~~~~~L~~il~~----~-~~~~~~vRq~A~i~LKn~i~~~W~-~i~~ 83 (191)
.=+.+++....|||+.+|......|..+- +.++.-.++...+.+ - .+.....--.-.+-+=..|.+.+. .+.+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 44677888888999999999999999854 455544443322211 0 011111111122222222233333 5778
Q ss_pred hHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhC--------------CCCCCch----HHHHHHHHhhcCCccc-c
Q psy9906 84 GVSEFIKQECLSAIGDP-SPLIRATVGILITTIASKG--------------DLKSWPE----LLPTLNDMLDSQDYNV-C 143 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~-~~~ir~~~~~~i~~Ia~~e--------------~~~~Wpe----ll~~L~~~l~~~~~~~-~ 143 (191)
+-+..++..++.+...+ -.....++..|+..+...| ||..++. ++..+...+..-++.. .
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~ 292 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQ 292 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHH
Confidence 88889988888888764 4666788999999998887 2333321 5555666665443332 3
Q ss_pred chhhhHHHHHhhhcCCCcHHHHHHHHH
Q psy9906 144 ELLPVLLPILKETLFHHDWEIKESGIL 170 (191)
Q Consensus 144 ~~~l~~L~~l~e~l~~~~~~~r~~~i~ 170 (191)
...-.+++.+.+.+-++...+-+.|+.
T Consensus 293 ~i~~~lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 293 KIMVPLFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334445577777777777777777654
No 63
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.89 E-value=2.1 Score=33.15 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
.+++ .+++...+++..+|..+.+++..+.+...-+-| +-+|.|+.+.+++++..+..|..++..+.|.
T Consensus 8 ryl~-~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLK-NILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3444 778888889999999999999999999966554 6899999999999999999999999888874
No 64
>KOG2062|consensus
Probab=88.84 E-value=9.4 Score=35.96 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh----------
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE---------- 155 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e---------- 155 (191)
..||..|--+..+.+.-||+.+..+|+-|.-.| |+.+|..++++..+ |++.+.++..+|.+.|-
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~l 628 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINL 628 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHH
Confidence 466644444577889999999888888887777 67777778877655 88999999999988884
Q ss_pred --h-cCCCcHHHHHHHHHHHHHHh
Q psy9906 156 --T-LFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 156 --~-l~~~~~~~r~~~i~~~~ai~ 176 (191)
. ..++.--+|..|+.+++.|.
T Consensus 629 Lepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HhhhhcChHHHHHHHHHHHHHHHH
Confidence 1 22344558888877777664
No 65
>KOG1059|consensus
Probab=88.81 E-value=14 Score=34.71 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=53.9
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD 136 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~ 136 (191)
+.-+-+|.=|..++=+.+-+| ++..|..+. .+.+-|-++++.|.+++..+|.++|+.. |+.+=.|-|.++.++.
T Consensus 155 sskpYvRKkAIl~lykvFLkY----PeAlr~~Fp-rL~EkLeDpDp~V~SAAV~VICELArKn-PknyL~LAP~ffkllt 228 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLKY----PEALRPCFP-RLVEKLEDPDPSVVSAAVSVICELARKN-PQNYLQLAPLFYKLLV 228 (877)
T ss_pred cCchHHHHHHHHHHHHHHHhh----hHhHhhhHH-HHHHhccCCCchHHHHHHHHHHHHHhhC-CcccccccHHHHHHHh
Confidence 344557766665554444444 334443333 6777788999999999999999999999 6677778888888776
Q ss_pred cC
Q psy9906 137 SQ 138 (191)
Q Consensus 137 ~~ 138 (191)
.+
T Consensus 229 tS 230 (877)
T KOG1059|consen 229 TS 230 (877)
T ss_pred cc
Confidence 55
No 66
>KOG0166|consensus
Probab=88.71 E-value=11 Score=34.09 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---C--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTH---P--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR 77 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~---~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~ 77 (191)
....+-..+....|.|.+.+-.|-+.+..+... | |...-+...+. .+.++.++.-|+=.|.|.-.-.
T Consensus 64 ~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~--~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 64 QASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS--RDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred HhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc--cCCChhHHHHHHHHHHHHhcCc
Confidence 344466778888899988888888888765542 2 33444555553 3456788888888888776522
Q ss_pred hcCCChhHHHHHHHH----HHHhhCCCCHHHHHHHHHHHHHHHhhCCC--CC--CchHHHHHHHHhhcCCc-cccchhhh
Q psy9906 78 FYEFPPGVSEFIKQE----CLSAIGDPSPLIRATVGILITTIASKGDL--KS--WPELLPTLNDMLDSQDY-NVCELLPV 148 (191)
Q Consensus 78 W~~i~~~~k~~ik~~----ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~--~~--Wpell~~L~~~l~~~~~-~~~~~~l~ 148 (191)
++..+..+... ++.++.+++..|+.++..+++.||..-+. +. =...++-|..++..++. .....+.-
T Consensus 142 ----se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 142 ----SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred ----hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 23333333332 55667789999999999999999987621 11 13456667777765543 33445555
Q ss_pred HHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 149 LLPILKE--------------------TLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 149 ~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
+|+-+|. -+.+.|..+...|.-|+.-+.+|
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5555554 34445555555555555555544
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.47 E-value=0.14 Score=31.20 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcC
Q psy9906 102 PLIRATVGILITTIASKGDL---KSWPELLPTLNDMLDSQ 138 (191)
Q Consensus 102 ~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~ 138 (191)
+.+|...+.+++.++...+. ..=|++++.|..+++++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~ 40 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD 40 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC
Confidence 35677777777765544411 12244444444444433
No 68
>KOG1060|consensus
Probab=88.10 E-value=19 Score=34.22 Aligned_cols=142 Identities=16% Similarity=0.169 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-------
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQ-LNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------- 80 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~-~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~------- 80 (191)
..++|.++|..- .| .....|-.++-. +.+..|...++-.+.-+-.+.+..+|.+--+||-++-...-+-
T Consensus 36 ~~~dL~~lLdSn--kd-~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSInt 112 (968)
T KOG1060|consen 36 RHDDLKQLLDSN--KD-SLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINT 112 (968)
T ss_pred ChHHHHHHHhcc--cc-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHH
Confidence 345666666542 23 344455555554 3343455555555554434567788888888888877642211
Q ss_pred ----CChhHHHHHHHHHH--------------------HhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906 81 ----FPPGVSEFIKQECL--------------------SAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD 136 (191)
Q Consensus 81 ----i~~~~k~~ik~~ll--------------------~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~ 136 (191)
+.+.. ..||..-| ++..++.+.||+.+|.+|-++-+.| |++-++|...+-.++.
T Consensus 113 fQk~L~DpN-~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLa 190 (968)
T KOG1060|consen 113 FQKALKDPN-QLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLA 190 (968)
T ss_pred HHhhhcCCc-HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhc
Confidence 11000 12222222 2223578999999999999999888 4555689888889998
Q ss_pred cCCccccchhhhHHHHHhh
Q psy9906 137 SQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 137 ~~~~~~~~~~l~~L~~l~e 155 (191)
+.++...-+|..++..+|-
T Consensus 191 D~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred CCCCcchhHHHHHHHHhch
Confidence 8888888888888888875
No 69
>KOG0211|consensus
Probab=87.86 E-value=22 Score=33.78 Aligned_cols=150 Identities=21% Similarity=0.157 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhcCCC---hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906 25 NLIQRAVQHKLEQLNTHPD---FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP 100 (191)
Q Consensus 25 ~~~r~~AE~~L~~~~~~~~---~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~ 100 (191)
-.+|.+.-+++-....+-+ |...+..+... ..+....+|-.|+-.|+..+... + .+..+..+=..++....++
T Consensus 493 wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~-G--~~w~~~~~i~k~L~~~~q~ 569 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETF-G--SEWARLEEIPKLLAMDLQD 569 (759)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHh-C--cchhHHHhhHHHHHHhcCc
Confidence 3455555555555444333 22222233210 12345579999998888887642 1 1222233333555555566
Q ss_pred CHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCCccccchhhhHHHHHhh----------------hc-CCCcH
Q psy9906 101 SPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE----------------TL-FHHDW 162 (191)
Q Consensus 101 ~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----------------~l-~~~~~ 162 (191)
+...|.....++..++..-... .=.+|+|.+.++..+++++.+-++.+.|..+.. .+ .+.+.
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL 649 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence 7899999999999888887433 235799999999999999999888888855543 11 34678
Q ss_pred HHHHHHHHHHHHHhh
Q psy9906 163 EIKESGILALGAIAE 177 (191)
Q Consensus 163 ~~r~~~i~~~~ai~~ 177 (191)
++|..|+.|+|.|..
T Consensus 650 dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 650 DVRYRAILAFGSIEL 664 (759)
T ss_pred chhHHHHHHHHHHHH
Confidence 889999999998764
No 70
>KOG1242|consensus
Probab=87.70 E-value=22 Score=32.50 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-------------
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL------------- 153 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l------------- 153 (191)
..+...++..+.+..+.+|.....++..|.+.-++..=+.++|.++..+....|....+++.+++.+
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp 294 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP 294 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence 3455566666677889999999999999999998888888888888777665676666666655443
Q ss_pred ------hhhcCCCcHHHHHHHHHHHH---HHhhhhh
Q psy9906 154 ------KETLFHHDWEIKESGILALG---AIAEVNK 180 (191)
Q Consensus 154 ------~e~l~~~~~~~r~~~i~~~~---ai~~~~~ 180 (191)
.|-+.+...++|.+++.++- .+++.++
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 34566778899998777554 4554443
No 71
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.20 E-value=2.2 Score=33.20 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHhhhh--------hhcCCChhH---HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhh
Q psy9906 62 TRSLSGLILKNNVRA--------RFYEFPPGV---SEFIKQECLSA-IGDPSPLIRATVGILITTIASK 118 (191)
Q Consensus 62 vRq~A~i~LKn~i~~--------~W~~i~~~~---k~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~ 118 (191)
+|+.|...|.-.++. +|..+=|+. ...-...|+.. +.++++++|..++.+++.+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 677777766555553 787644433 33344456664 4568888988888888877544
No 72
>KOG1824|consensus
Probab=87.06 E-value=5.3 Score=38.55 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSWPELLPTLN 132 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~ 132 (191)
.+..+..|..+...+|=.|.-+-..+++-.|..|- ..+.++.+++..||+.+-.++...+..-+ .+-.||++|.|.
T Consensus 976 ~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig-~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 976 RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIG-DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 46677888888888877777666667777666665 44567788999999999888888887663 245666666666
Q ss_pred HHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 133 DMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 133 ~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
+-..-.....++.=|==|+ +..+...+.|.+|..++-..+|.+
T Consensus 1055 ~eTkvrkelIreVeMGPFK----H~VDdgLd~RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1055 SETKVRKELIREVEMGPFK----HTVDDGLDLRKAAFECMYTLLDSC 1097 (1233)
T ss_pred HhhhhhHhhhhhhcccCcc----ccccchHHHHHHHHHHHHHHHHhh
Confidence 5433221111111111111 122334566666666665555543
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.25 E-value=1.4 Score=26.52 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=34.6
Q ss_pred hHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906 61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTI 115 (191)
Q Consensus 61 ~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I 115 (191)
.+|..|+..|-+.....-..+ ......+-..|+..|.++++.||..++.+++.|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578888888876333221111 223334445666777788889999999988764
No 74
>KOG1949|consensus
Probab=85.52 E-value=8.5 Score=36.13 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=86.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhh--cCCCh------------HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906 18 KESQSPDNLIQRAVQHKLEQLN--THPDF------------NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP 83 (191)
Q Consensus 18 ~~~~s~d~~~r~~AE~~L~~~~--~~~~~------------~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~ 83 (191)
++...||-++|..|-.-+-++- ..||. ..+|..++ .+..+.||..|..-+-+.+...|.-+|+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL---~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL---EDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 3445678888888766665544 24554 23344555 3567889999999999999999999988
Q ss_pred hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 84 GVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
..-..+-..+..-+.. +...||-..-..+..|+..- ...-...++|.+-..+.+.+...+-++...|..+++
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 7766666677777764 56688877777777776443 112223455555555555444444444445555554
No 75
>KOG1061|consensus
Probab=85.31 E-value=33 Score=32.27 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-------------
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR------------- 77 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~------------- 77 (191)
++.++-.+..+.-+..|++|-+..-..-. -.|-...+-+++......+...+.+.=+|+.|+-..+
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~k 93 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLK 93 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhc
Confidence 33344444434344677777666654443 2444555555554444557778888888888876521
Q ss_pred ------hcC----------C-ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCC
Q psy9906 78 ------FYE----------F-PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 78 ------W~~----------i-~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~ 139 (191)
|.- + -+..-+++-+.+..++.+.++.+|+.++.+++.+...+.. ..=.++++.|.+++.++|
T Consensus 94 D~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~ 173 (734)
T KOG1061|consen 94 DCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSN 173 (734)
T ss_pred cCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCC
Confidence 110 1 2444557777888888999999999999999999988843 223469999999999889
Q ss_pred ccccchhhhHHHHHhh
Q psy9906 140 YNVCELLPVLLPILKE 155 (191)
Q Consensus 140 ~~~~~~~l~~L~~l~e 155 (191)
+..+-.++..|..+.+
T Consensus 174 p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 174 PMVVANALAALSEIHE 189 (734)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8899999999988876
No 76
>KOG1943|consensus
Probab=85.17 E-value=12 Score=36.62 Aligned_cols=131 Identities=15% Similarity=0.033 Sum_probs=78.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH-
Q psy9906 18 KESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS- 95 (191)
Q Consensus 18 ~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~- 95 (191)
.+.++++-+.|+.|-+.|++.-. +++|.--. .++....-.....|+=+-..+...|..+ +.-++-+-+.++.
T Consensus 478 ~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~-----~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 478 VALFDREVNCRRAASAALQENVGRQGNFPHGI-SLISTIDYFSVTNRSNCYLDLCVSIAEF-----SGYREPVFNHLLTK 551 (1133)
T ss_pred HHhcCchhhHhHHHHHHHHHHhccCCCCCCch-hhhhhcchhhhhhhhhHHHHHhHHHHhh-----hhHHHHHHHHHHhc
Confidence 45588899999999999997664 45552221 2221101123344554445555554432 1112222222222
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 96 ~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
-+..=+..+|-..+.++..+...++...=...+|.++...-+.+.+.++|.......+.
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 24455899999999999999888843333356777777777788888777776664443
No 77
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.95 E-value=5.4 Score=26.87 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906 86 SEFIKQECLSAIGD-PSPLIRATVGILITTIASKGD---LKSWPELLPTLNDMLDSQDYNVCELLPVLLPI 152 (191)
Q Consensus 86 k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~ 152 (191)
+..+|. +...+.+ ++..+|..+-.|+..+...-. ...||.++..+.....+++...+..|..+++.
T Consensus 16 ~~fL~P-f~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKP-FEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHH-HHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 344443 3334443 678888888888888877552 36799999999999888887777887777654
No 78
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=84.04 E-value=22 Score=29.08 Aligned_cols=138 Identities=18% Similarity=0.122 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906 7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR 77 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~ 77 (191)
++.++.|+.+|+.+- |+..+..|-..+-.....| |-...+..++ .+.++.+|.-|.-.|.|.-
T Consensus 11 ~~~l~~Ll~lL~~t~--dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL---~~p~~~vr~~AL~aL~Nls--- 82 (254)
T PF04826_consen 11 AQELQKLLCLLESTE--DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL---NDPNPSVREKALNALNNLS--- 82 (254)
T ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc---CCCChHHHHHHHHHHHhcC---
Confidence 345888888887754 5578888777776654433 2233333333 3567788887877776642
Q ss_pred hcCCChhHHHHHHHHHHHhhC----C-CCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906 78 FYEFPPGVSEFIKQECLSAIG----D-PSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQDYNVCELLPVLLP 151 (191)
Q Consensus 78 W~~i~~~~k~~ik~~ll~~l~----~-~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~ 151 (191)
.+.+.+..||..+-+.+. . -+..++...-.++..+...+ +..-=...+|.++.++.+++...+.-++.+|-
T Consensus 83 ---~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 83 ---VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred ---CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 334555566655444432 2 25666666666677765444 33333457888889999888888777887775
Q ss_pred HHhh
Q psy9906 152 ILKE 155 (191)
Q Consensus 152 ~l~e 155 (191)
-+.+
T Consensus 160 nLS~ 163 (254)
T PF04826_consen 160 NLSE 163 (254)
T ss_pred Hhcc
Confidence 5543
No 79
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.80 E-value=32 Score=30.89 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCC---hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNT----HPD---FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV 85 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~----~~~---~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~ 85 (191)
|..+|...-||+..+|+..-+.|.++.+ .|+ -...|+..+. ..+.+..+|.++.++++..+. .++.++
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~-~~~~s~~vrnfsliyi~~g~~----Rl~~~e 99 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYK-EPSDSSFVRNFSLIYIEMGFD----RLDDEE 99 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHh-CCCCchHHHHHHHHHHHHhhh----cCCHHH
Confidence 5667788889999999999999998764 244 3666777775 344578899999999876654 678999
Q ss_pred HHHHHHHHHHhhCC
Q psy9906 86 SEFIKQECLSAIGD 99 (191)
Q Consensus 86 k~~ik~~ll~~l~~ 99 (191)
|..+=..+++++..
T Consensus 100 ~~~llP~ll~~is~ 113 (501)
T PF13001_consen 100 RRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999984
No 80
>KOG1060|consensus
Probab=82.81 E-value=6.8 Score=37.08 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchh-hhHHHHHhh--------------
Q psy9906 92 ECLSAIGD-PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELL-PVLLPILKE-------------- 155 (191)
Q Consensus 92 ~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~-l~~L~~l~e-------------- 155 (191)
.|.+.|.+ .+...+.+...+|+.||+-+ +-.+++|.++..+.+.|...+... +++++|-++
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~---dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk 115 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGK---DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQK 115 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHh
Confidence 34455554 46666777888888888766 356789999988888876553333 334455554
Q ss_pred hcCCCcHHHHHHHHHHHHHH
Q psy9906 156 TLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 156 ~l~~~~~~~r~~~i~~~~ai 175 (191)
.+.+++..+|-.|++++..|
T Consensus 116 ~L~DpN~LiRasALRvlSsI 135 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSI 135 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhc
Confidence 67889999999999988875
No 81
>KOG0213|consensus
Probab=81.75 E-value=50 Score=31.59 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhhCCCChhHHhHHHHHHHHhh
Q psy9906 44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNV 74 (191)
Q Consensus 44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i 74 (191)
....+..++-...+.++.+||.|+-+.-...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la 827 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLA 827 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 3333444443345678889998886655444
No 82
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.38 E-value=5.9 Score=28.61 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=54.1
Q ss_pred hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906 44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120 (191)
Q Consensus 44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~ 120 (191)
....|..++. ++.++.+-..|+-=+-.+++.+-....--.+-..|..+++.|.++++.||..+-.++..+..+-|
T Consensus 44 llk~L~~lL~--~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 44 LLKKLIKLLD--KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp HHHHHHHHH---SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHc--cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 4667888884 34477777778877777777653332223455789999999999999999999999999987654
No 83
>KOG0212|consensus
Probab=80.70 E-value=22 Score=32.50 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC--hHHHHHHHHhh----hCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906 9 GLIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPD--FNNYLIFVLTK----LTSEDEPTRSLSGLILKNNVRARFYEF 81 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~--~~~~L~~il~~----~~~~~~~vRq~A~i~LKn~i~~~W~~i 81 (191)
++..++.+|..-+.. ++.+|.---.-|..+-..|+ ++.|+-.++.- .+.....||.++-..+-+++..-=+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~- 242 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS- 242 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-
Confidence 478889999887665 88899999999998888787 45665554421 24567889999999888877642221
Q ss_pred Chh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHhhcC
Q psy9906 82 PPG-VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW---PELLPTLNDMLDSQ 138 (191)
Q Consensus 82 ~~~-~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W---pell~~L~~~l~~~ 138 (191)
|.. +...+-+.++.-+.++++.++.++-.-|.++++.-+++-- ++.+..++-++.+.
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence 111 3334455666677788899998887777777776654332 33444444444443
No 84
>KOG2025|consensus
Probab=79.08 E-value=59 Score=30.80 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh-cCCChh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNT---HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF-YEFPPG 84 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W-~~i~~~ 84 (191)
.+..+.+..+++..+. .++-.-...+...+ ..+|..++-.++..-+..+..-|-+. .+++++..-- .+..++
T Consensus 6 r~~~If~k~Q~s~agh--~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~--fla~fv~sl~q~d~e~D 81 (892)
T KOG2025|consen 6 RMQLIFNKIQQSDAGH--YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILS--FLARFVESLPQLDKEED 81 (892)
T ss_pred HHHHHHHHHHhhhcch--HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHH--HHHHHHHhhhccCchhh
Confidence 4555555555555553 22222222221111 24566666666543344554445432 2334443211 123334
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc----
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKG---DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL---- 157 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e---~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l---- 157 (191)
--+.+-..++.+.-+++..||.-.+++++.+.... ...-...+...+...+-+..++.+.-|..+|+.+.++=
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 44555557777777889999999999999998732 12334456666666666677888888999998887421
Q ss_pred ------------CCCcHHHHHHHHHH
Q psy9906 158 ------------FHHDWEIKESGILA 171 (191)
Q Consensus 158 ------------~~~~~~~r~~~i~~ 171 (191)
.+|+.++|.+++..
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSN 187 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 24678899988643
No 85
>KOG0392|consensus
Probab=79.05 E-value=21 Score=35.78 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHH-----HhhCC-----CCHHHHHHHHHHHHHHHhhCCCCCCch
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECL-----SAIGD-----PSPLIRATVGILITTIASKGDLKSWPE 126 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll-----~~l~~-----~~~~ir~~~~~~i~~Ia~~e~~~~Wpe 126 (191)
+..-.+|+-|++-++...+.+...++-+.-+.+--.++ .-+.+ ....+|.+.+++++...++.-+..-.+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 44557999999999999998776655433332222222 22222 235899999999999999997777777
Q ss_pred HHHHHHHHhhcCCccccchhhhHHHHH
Q psy9906 127 LLPTLNDMLDSQDYNVCELLPVLLPIL 153 (191)
Q Consensus 127 ll~~L~~~l~~~~~~~~~~~l~~L~~l 153 (191)
.+..+.+++..++++.++|++..++|.
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~ 194 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYN 194 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHH
Confidence 888888999888888888777665443
No 86
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.25 E-value=9.1 Score=31.94 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC------CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE------FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTI 115 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~------i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I 115 (191)
+++...++.++... +.+.++.++...++-..+...-.. .........=..++..+..++..++.+.+.+++.+
T Consensus 54 ~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45777788888643 467889999999998877643211 11111111334666777779999999999999999
Q ss_pred HhhCCCCCCc---hHHHHHHHHhhcC----CccccchhhhHHHHHh
Q psy9906 116 ASKGDLKSWP---ELLPTLNDMLDSQ----DYNVCELLPVLLPILK 154 (191)
Q Consensus 116 a~~e~~~~Wp---ell~~L~~~l~~~----~~~~~~~~l~~L~~l~ 154 (191)
+.......=. +.++.+++.+.+. +.+....++.+|..+-
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 9999665545 7888888888763 3344577777775553
No 87
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=78.23 E-value=6.5 Score=23.30 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
.+.+++|+.+++.|...++..|.++..+|+.+.+-.
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 456899999999999887888888888888886544
No 88
>KOG1991|consensus
Probab=78.17 E-value=71 Score=31.19 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHHhhcCCChHHHHHHHHhhhCC---CChhHHhHHHHHHHHhhhh--hhcCCC
Q psy9906 11 IQILQLLKESQSPDNLI---QRAVQHKLEQLNTHPDFNNYLIFVLTKLTS---EDEPTRSLSGLILKNNVRA--RFYEFP 82 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~---r~~AE~~L~~~~~~~~~~~~L~~il~~~~~---~~~~vRq~A~i~LKn~i~~--~W~~i~ 82 (191)
..+..+++.-.+|.+.+ +.=|+-+++++. ++....++.++..-++ .++.+=.++.-+|++.+.+ -|.-+-
T Consensus 265 ~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~--~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~ 342 (1010)
T KOG1991|consen 265 HILNRLFERYGSPSLVVPEYKEFAQMFLKNFA--QGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLK 342 (1010)
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 45666777777764333 333444444443 3555555555543222 3566778899999999986 488777
Q ss_pred hhHHHHHHHHHHHhhCC-----------CCHHHHH-------------HHHHHHHHHHhhCCCCCCchHHHHHHHHhhc-
Q psy9906 83 PGVSEFIKQECLSAIGD-----------PSPLIRA-------------TVGILITTIASKGDLKSWPELLPTLNDMLDS- 137 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~-----------~~~~ir~-------------~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~- 137 (191)
|.-...+-+.++..|+- |...+|+ +...++..+++.-.++.-|.+++++.+.+++
T Consensus 343 PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~ 422 (1010)
T KOG1991|consen 343 PHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRY 422 (1010)
T ss_pred hHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhh
Confidence 77777777777777651 2346664 3567788888887788999999999999982
Q ss_pred -----C--CccccchhhhHHHHHhh
Q psy9906 138 -----Q--DYNVCELLPVLLPILKE 155 (191)
Q Consensus 138 -----~--~~~~~~~~l~~L~~l~e 155 (191)
+ ++...+||+++++-+++
T Consensus 423 ~~~~~~~~~~rqkdGAL~~vgsl~~ 447 (1010)
T KOG1991|consen 423 KEASPPNKNPRQKDGALRMVGSLAS 447 (1010)
T ss_pred cccCCCccChhhhhhHHHHHHHHHH
Confidence 2 45668999999988876
No 89
>KOG0413|consensus
Probab=78.14 E-value=65 Score=31.78 Aligned_cols=120 Identities=11% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCCChhHHhHHHHHHHHhhhh---hhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc-hHHHHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRA---RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP-ELLPTL 131 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~---~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp-ell~~L 131 (191)
...++-||..+.++|-|.+.. +|+. .+-=..+-.+.+.++.||+-.--+++.|-..+-|.-.| .|++.+
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~G-------~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWNG-------ELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcch-------hhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 456788999999999999986 5763 22223556677889999999999999999998776655 477766
Q ss_pred HHHhhc------C-----------------CccccchhhhHHHHHhhhcCCCcHHHHH--HHHHHHHHHhhhhhhh
Q psy9906 132 NDMLDS------Q-----------------DYNVCELLPVLLPILKETLFHHDWEIKE--SGILALGAIAEVNKSI 182 (191)
Q Consensus 132 ~~~l~~------~-----------------~~~~~~~~l~~L~~l~e~l~~~~~~~r~--~~i~~~~ai~~~~~~~ 182 (191)
+.+-+- + |+..+-.=|.+..++-+++-+...-.-. -+...+.+|++|+-++
T Consensus 1089 ~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~de~rf~v~~kiC~~Ila~~~dG~l~~ 1164 (1529)
T KOG0413|consen 1089 IALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLDDESRFDVKMKICQRILAPIVDGELDF 1164 (1529)
T ss_pred HHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCcCCh
Confidence 654321 1 1122333455555666655332211111 2334677899998766
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.84 E-value=40 Score=31.52 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=17.8
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHH
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LK 71 (191)
|........++-...+.++.+|+-|+-+.-
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 444444444544446778889988875443
No 91
>KOG1293|consensus
Probab=76.79 E-value=18 Score=33.54 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=85.6
Q ss_pred CChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-CC-CC--chHHHHHHH
Q psy9906 58 EDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-LK-SW--PELLPTLND 133 (191)
Q Consensus 58 ~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-~~-~W--pell~~L~~ 133 (191)
.+...+.+|.+.||+.=+.-..--..-.+..+-+.+++.+..++..|...+-.+|..++-.-. +. .. .+++..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 467788889999988766432111113345677788999988998888777777766664432 21 11 357888999
Q ss_pred HhhcCCccccchhhhHHHHHh---h------------------hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 134 MLDSQDYNVCELLPVLLPILK---E------------------TLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 134 ~l~~~~~~~~~~~l~~L~~l~---e------------------~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
++.+.+.+.+..++.+|+.+. + -.-+++|.+++.+...+-....|..+
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 999999988888888876553 1 12357899999998887776666443
No 92
>KOG1077|consensus
Probab=76.33 E-value=72 Score=30.29 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=57.9
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCC-hhHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFP-PGVSEFIKQECLSAIG-DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD 136 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~-~~~k~~ik~~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~ 136 (191)
+.++|-+|.=.+-+.... ..+ +..|.. ++.++..|. +.+-+||+.+.+.+-.++..+ +=.+.+..+++++.
T Consensus 342 E~NiRYLaLEsm~~L~ss---~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 342 ETNIRYLALESMCKLASS---EFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQIVAELLQYLE 414 (938)
T ss_pred cccchhhhHHHHHHHHhc---cchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHHHHHHHHHHHh
Confidence 455666655433333332 222 333333 678888888 478999999999999988766 45688999999998
Q ss_pred cCCccccchhhhHHHHHhh
Q psy9906 137 SQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 137 ~~~~~~~~~~l~~L~~l~e 155 (191)
+.|+..+|-...=..++.|
T Consensus 415 tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILAE 433 (938)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 8776554433332334444
No 93
>KOG0211|consensus
Probab=75.53 E-value=53 Score=31.28 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHhh-cCC--ChHHHHHHHHhhhCCC-ChhHHhHHHHHHHHhhhhhhcCCC-hhHHHHHHHHHHHhhC
Q psy9906 24 DNLIQRAVQHKLEQLN-THP--DFNNYLIFVLTKLTSE-DEPTRSLSGLILKNNVRARFYEFP-PGVSEFIKQECLSAIG 98 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~-~~~--~~~~~L~~il~~~~~~-~~~vRq~A~i~LKn~i~~~W~~i~-~~~k~~ik~~ll~~l~ 98 (191)
.+.+|+.+-+.|.... ..| +-..++..++...... .-+-|..|+-+++.. ...++ +..|..+|...-+.-.
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~----~~~~~~~~vk~elr~~~~~lc~ 247 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKL----YVSLPDDAVKRELRPIVQSLCQ 247 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHh----ccCCChHHHHHHHHHHHHhhcc
Confidence 3445766655555433 222 2233344443322221 112344443333322 23344 5677777765555566
Q ss_pred CCCHHHHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 99 DPSPLIRATVGILITTIASKGD-LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 99 ~~~~~ir~~~~~~i~~Ia~~e~-~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
+..+.+|+.++.=.+.+++... ...|-++++.+.++........++.+...+..+.
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL 304 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH
Confidence 6889999999999999998873 4678889999999988776666777776654333
No 94
>KOG0414|consensus
Probab=74.81 E-value=63 Score=32.20 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=89.2
Q ss_pred HHHHHHhcCCCH-----HHHHHHHHHHHHhhc-CCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCC-hhH
Q psy9906 14 LQLLKESQSPDN-----LIQRAVQHKLEQLNT-HPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFP-PGV 85 (191)
Q Consensus 14 ~~lL~~~~s~d~-----~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~-~~~ 85 (191)
..+++...+++. ..-+.--.+|.++.. -|.. ...+..++....+.....|-.-.-.+-|.+...-..-. ++.
T Consensus 273 ~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~ 352 (1251)
T KOG0414|consen 273 GNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEM 352 (1251)
T ss_pred HHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 345555555533 334555566666665 3553 23333332212344555665444455555555443311 333
Q ss_pred HHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 86 SEFIKQECLSAI----GDPSPLIRATVGILITTIASKG--DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 86 k~~ik~~ll~~l----~~~~~~ir~~~~~~i~~Ia~~e--~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
-..+|..+++.| .+.++.+|..+-+++..|...- +++.|.+++...+..+++.+...+..|+..+.-+-
T Consensus 353 sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L 427 (1251)
T KOG0414|consen 353 SKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL 427 (1251)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 345666566655 4578999999999999999886 88999999999999998888788888888874443
No 95
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.36 E-value=8.8 Score=35.58 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh-------------------hcCC
Q psy9906 100 PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE-------------------TLFH 159 (191)
Q Consensus 100 ~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e-------------------~l~~ 159 (191)
.++.+|+..+.+++.+|++- .-|+++|+|-....+. ++..++.+.++...||+ -+.+
T Consensus 293 ~deYVRnvt~ra~~vva~al---gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D 369 (975)
T COG5181 293 KDEYVRNVTGRAVGVVADAL---GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD 369 (975)
T ss_pred ccHHHHHHHHHHHHHHHHhh---CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc
Confidence 36899999999999999887 3578999999888877 88889999999888876 1233
Q ss_pred CcHHHHHHHHHHHHHHhhhhhhhch
Q psy9906 160 HDWEIKESGILALGAIAEVNKSIGL 184 (191)
Q Consensus 160 ~~~~~r~~~i~~~~ai~~~~~~~~~ 184 (191)
....+|..+..++..+++-.-|.|.
T Consensus 370 ~~~~vRi~tA~alS~lae~~~Pygi 394 (975)
T COG5181 370 RSRFVRIDTANALSYLAELVGPYGI 394 (975)
T ss_pred cceeeeehhHhHHHHHHHhcCCcch
Confidence 4455676666777777776655553
No 96
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.33 E-value=19 Score=24.59 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHhhcCCc
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKG--DLKSWPELLPTLNDMLDSQDY 140 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e--~~~~Wpell~~L~~~l~~~~~ 140 (191)
..+.-+.++...+|...-..+..+++.- ....+|.++..+.+.++++|.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~Ds 57 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDS 57 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCc
Confidence 4455556666777766555555555443 234455555555555555543
No 97
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=74.14 E-value=21 Score=24.29 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILIT 113 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~ 113 (191)
.-.+|.+|+-+|...++ ++..-.+.-|..|-..+++.+.++.+.+...++.+.+
T Consensus 19 h~~LRd~AA~lL~~I~~-~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~g 72 (92)
T PF07571_consen 19 HWALRDFAASLLAQICR-KFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVG 72 (92)
T ss_pred hHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44799999999998665 4666667777788888888888887777776666544
No 98
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.62 E-value=90 Score=32.80 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=81.7
Q ss_pred CChhHHhHHHHHHHHhhhhhhc--CCC--hhHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC---CCCCCchHHH
Q psy9906 58 EDEPTRSLSGLILKNNVRARFY--EFP--PGVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG---DLKSWPELLP 129 (191)
Q Consensus 58 ~~~~vRq~A~i~LKn~i~~~W~--~i~--~~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e---~~~~Wpell~ 129 (191)
.+..++.+|.-.||+.-.+.-. .++ .-.++.+|. +...|.. ....+|..+-.|+..|...- ....|+.++.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 3567899999888886665432 121 123566664 3344444 57799999999999886654 3468999999
Q ss_pred HHHHHhhcCCccccchhhhHHHHHhhhcCCC----cHHHHHHHHHHHHHHhh
Q psy9906 130 TLNDMLDSQDYNVCELLPVLLPILKETLFHH----DWEIKESGILALGAIAE 177 (191)
Q Consensus 130 ~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~----~~~~r~~~i~~~~ai~~ 177 (191)
.+.......++..++.+..++..|.+++|+. +...-...|.++...+.
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~ 1279 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTN 1279 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHh
Confidence 9998888777888899999998888876651 13344455555555543
No 99
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=71.93 E-value=9.7 Score=22.64 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+.+++|+.+++.|...+.. |.++.-+|+.+.+-+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4579999999999886655 888888888877655
No 100
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=71.90 E-value=40 Score=25.40 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-hcCCChhHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCC
Q psy9906 47 YLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-FYEFPPGVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKGDLKSW 124 (191)
Q Consensus 47 ~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-W~~i~~~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~W 124 (191)
-+..++ ++.+...|..|..++|-.+... |..+-..-...++ .++..|.. .++.++..+..+++.|...- ..|
T Consensus 29 ri~~LL---~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~-~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~--~~~ 102 (165)
T PF08167_consen 29 RINSLL---QSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLR-ALLSILEKPDPPSVLEAAIITLTRLFDLI--RGK 102 (165)
T ss_pred HHHHHh---CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHh--cCC
Confidence 344444 3556778998889999888886 9877677777777 58888887 46788888888888888654 344
Q ss_pred chH------------HHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 125 PEL------------LPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 125 pel------------l~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
|++ ++.++++++. ....+.++.+|..+-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 444 3334444442 2334555555544444
No 101
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=70.58 E-value=11 Score=28.67 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906 24 DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNN 73 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~ 73 (191)
|....++|.+.|.+... ++.... +.++. ..-.+..||.+|.-.|++.
T Consensus 59 ~~~e~~e~~~lL~~W~~-i~~~~a-LeLL~-~~f~~~~VR~yAV~~L~~~ 105 (166)
T cd00870 59 DEQEVKQALELMPKWAK-IDIEDA-LELLS-PYFTNPVVRKYAVSRLKLA 105 (166)
T ss_pred CHHHHHHHHHHHhcCCC-CCHHHH-HHHcC-ccCCCHHHHHHHHHHHHhC
Confidence 55566666666665433 443333 34443 1233566777766666653
No 102
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.68 E-value=33 Score=25.91 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHhhcCC-ccccchhhhHHHHHhhh
Q psy9906 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD----LKSWPELLPTLNDMLDSQD-YNVCELLPVLLPILKET 156 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~----~~~Wpell~~L~~~l~~~~-~~~~~~~l~~L~~l~e~ 156 (191)
....-...+..+...|.+.++.-|-.....+..++.... -...-..+..+...+++++ ....+.+..++..+.+.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456667788888999988777777666666666665541 1233445666777777764 45678888899888887
Q ss_pred cCCCcHHHHHHHHHHHHHHh
Q psy9906 157 LFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 157 l~~~~~~~r~~~i~~~~ai~ 176 (191)
....+-..|+.+..-+..++
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i 118 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFI 118 (165)
T ss_pred hcCCCchHHHHhhccHHHHH
Confidence 66655557775544444443
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.61 E-value=12 Score=20.92 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIAS 117 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~ 117 (191)
.|++.|.+++..++..++.++..|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 56667778899999999999998874
No 104
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.39 E-value=9 Score=35.22 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=59.7
Q ss_pred HHHH-hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh-------------h
Q psy9906 92 ECLS-AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE-------------T 156 (191)
Q Consensus 92 ~ll~-~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e-------------~ 156 (191)
.+|. ++.+.+.-+|+++.-+++-|+-.| |++++..++++..+ |++.+.+...+|.+.|- -
T Consensus 555 ~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L 629 (926)
T COG5116 555 TLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEAL 629 (926)
T ss_pred hhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHH
Confidence 3444 466678888988887777777666 67888888887654 77888888888887774 1
Q ss_pred cCCCcHHHHHHHHHHHHHHhhh
Q psy9906 157 LFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 157 l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
+.++.--+|.+|+.++|.|..-
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhh
Confidence 2445667899999888887643
No 105
>KOG2160|consensus
Probab=67.34 E-value=81 Score=27.07 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=90.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcC---------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH---------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~---------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
.+.|.+.+..|=..|+.+-.+ -|.+.-++..+ .+.+..+|-.|+-.+-..+.++-..--.-....-.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l---~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYL---ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHh---cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 344788888888877765532 22333333333 467889999999888888776532100000111344
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcC--CccccchhhhHHHHHhh---------
Q psy9906 92 ECLSAIGD-PSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQ--DYNVCELLPVLLPILKE--------- 155 (191)
Q Consensus 92 ~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~--~~~~~~~~l~~L~~l~e--------- 155 (191)
.|+..+.. .+..+|+++-.+|+.+.+...|..= -.-+..|...++++ +...+.-++.++..+-+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 67777775 5778999999999999999855320 01244566666664 33333444444433322
Q ss_pred ----------h-cCCCcHHHHHHHHHHHHHH
Q psy9906 156 ----------T-LFHHDWEIKESGILALGAI 175 (191)
Q Consensus 156 ----------~-l~~~~~~~r~~~i~~~~ai 175 (191)
+ ....+|++++.++.++...
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 1 1234788999887766553
No 106
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=66.37 E-value=14 Score=28.34 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 24 DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
|..+|+-|-+.|+.+.. .+...||.++.+...-....---+|-.++++.+.
T Consensus 84 d~~VR~yAV~~L~~~sd-~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~ 134 (171)
T cd00872 84 DEHVREFAVRCLEKLSD-DELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALR 134 (171)
T ss_pred CHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhc
Confidence 56666666666665443 3455555555544332222223344445555544
No 107
>KOG2025|consensus
Probab=66.25 E-value=1.2e+02 Score=28.80 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=72.3
Q ss_pred ChHHHHH-HHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 43 DFNNYLI-FVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 43 ~~~~~L~-~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
|+..+++ +++....+.+-.||.=...++...+. .=..++++.-+.+...++.-+.+-.+.||.++.-+++..-..+..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 4544443 33321124466899888888877766 334588999999999999999999999999988888877654433
Q ss_pred CCCchHHHHHHHHhhcC-CccccchhhhHH
Q psy9906 122 KSWPELLPTLNDMLDSQ-DYNVCELLPVLL 150 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~-~~~~~~~~l~~L 150 (191)
.+- +....+...+++. ++..+.++|..+
T Consensus 160 ee~-~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 EEC-PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred Ccc-cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 333 3556666666643 556666666653
No 108
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=65.80 E-value=17 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCC-----chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 100 PSPLIRATVGILITTIASKGDLKSW-----PELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 100 ~~~~ir~~~~~~i~~Ia~~e~~~~W-----pell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
++..+ +.+++..+...+-++.| ++++|.+..++++..+.++.+|+..|..+..
T Consensus 41 ~D~sv---lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 41 NDPSV---LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred CCchH---HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 55555 58888888866666667 5799999999999988888899998866655
No 109
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=64.81 E-value=55 Score=24.26 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
.+|+.|..+..++.+.+..++.. .+-=.+|.+.|++-++.++.+.+-..++.+..+|+..
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~ 71 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESS 71 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 44555555667787777777765 1222578889999999888899999999998898854
No 110
>KOG0213|consensus
Probab=64.69 E-value=1.4e+02 Score=28.82 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh------hhc-
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA------RFY- 79 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~------~W~- 79 (191)
..+..+|-..-+..+.-|+.|-.+|..=...-| |-..|.-+++ .+.+.+-|++-.-.+-+.+-+ .+-
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs--~tLeDqerhllVkvidriLyklDdlvrpYVh 440 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMS--PTLEDQERHLLVKVIDRILYKLDDLVRPYVH 440 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcC--ccccchhhhhHHHHHHHHHHhhcccchhcee
Confidence 344555555555567788888888875443222 3334443332 455666676544333333321 110
Q ss_pred ---------CCChhHHH-----HHHHHHHHh---------hC----CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHH
Q psy9906 80 ---------EFPPGVSE-----FIKQECLSA---------IG----DPSPLIRATVGILITTIASKGDLKSWPELLPTLN 132 (191)
Q Consensus 80 ---------~i~~~~k~-----~ik~~ll~~---------l~----~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~ 132 (191)
.++++-+. .|-.+|... |. +-+..||+..+.+++.+|.+- .-|+++|+|-
T Consensus 441 kILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gip~llpfLk 517 (1172)
T KOG0213|consen 441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GIPALLPFLK 517 (1172)
T ss_pred eeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---CcHHHHHHHH
Confidence 13333222 122233221 11 236899999999999999987 4689999999
Q ss_pred HHhhcC-CccccchhhhHHHHHhh-------------------hcCCCcHHHHHHHHHHHHHHhhhhhhhchh
Q psy9906 133 DMLDSQ-DYNVCELLPVLLPILKE-------------------TLFHHDWEIKESGILALGAIAEVNKSIGLK 185 (191)
Q Consensus 133 ~~l~~~-~~~~~~~~l~~L~~l~e-------------------~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~ 185 (191)
....|. ++..++.+..|...++. .+.+..-.+|.-+..++.+++|-.-|.|..
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie 590 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIE 590 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchH
Confidence 998887 88888888887665554 345567789998889999999887777653
No 111
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=64.60 E-value=18 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHh
Q psy9906 88 FIKQECLSAIGDP--SPLIRATVGILITTIASKG---DLKSWPELLPTLNDML 135 (191)
Q Consensus 88 ~ik~~ll~~l~~~--~~~ir~~~~~~i~~Ia~~e---~~~~Wpell~~L~~~l 135 (191)
.||.-++.+|... ....-+.++.+++.+|..- ..+.|+||...+....
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~ 55 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS 55 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence 4788899998752 3345566777777776654 4588999998888765
No 112
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=64.37 E-value=97 Score=26.95 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHH------hhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh--h
Q psy9906 9 GLIQILQLLKESQ--SPDNLIQRAVQHKLEQ------LNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR--F 78 (191)
Q Consensus 9 ~~~~l~~lL~~~~--s~d~~~r~~AE~~L~~------~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~--W 78 (191)
.+..+.+.+.... ..+...|.++-..+-= ++.+|....++-.++.-.. +..+...|+-.|.-.+.-. .
T Consensus 226 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~~~ 303 (415)
T PF12460_consen 226 DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLS--SPELGQQAAKAFGILLSDSDDV 303 (415)
T ss_pred hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcHHh
Confidence 4455555554444 3344455555444421 2234544444333332111 2556777776666555430 0
Q ss_pred -c-CCChhHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccc
Q psy9906 79 -Y-EFPPGVSEFIKQECLS--------AIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCE 144 (191)
Q Consensus 79 -~-~i~~~~k~~ik~~ll~--------~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~ 144 (191)
+ ......|-.-|+.+.. .....+...|..+-.+++.|.++-+. .+=|+++|-+++.+..+|...+.
T Consensus 304 l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~ 383 (415)
T PF12460_consen 304 LNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLL 383 (415)
T ss_pred cCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 0 1123444444444433 33444555888888899999988753 45688999999999988888888
Q ss_pred hhhhHHHHHhhh
Q psy9906 145 LLPVLLPILKET 156 (191)
Q Consensus 145 ~~l~~L~~l~e~ 156 (191)
+++.+|..+-++
T Consensus 384 s~L~tL~~~l~~ 395 (415)
T PF12460_consen 384 SSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHc
Confidence 888888655553
No 113
>KOG2956|consensus
Probab=64.32 E-value=94 Score=27.95 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH-HhhcC-CCh-HHHHHHHHhhhCCCChhHHhHHHH-HHHHhhhhhhcCCChhHH
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLE-QLNTH-PDF-NNYLIFVLTKLTSEDEPTRSLSGL-ILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~-~~~~~-~~~-~~~L~~il~~~~~~~~~vRq~A~i-~LKn~i~~~W~~i~~~~k 86 (191)
..+..+|+.+-.+++++-+.||+-.. -+... |-- +..+..++. + .+.-|-.+++ .+++.+. .++.++-
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il--t--~D~~~~~~~iKm~Tkl~e----~l~~EeL 442 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL--T--ADEPRAVAVIKMLTKLFE----RLSAEEL 442 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh--c--CcchHHHHHHHHHHHHHh----hcCHHHH
Confidence 45778888888887776666666544 44443 432 333444443 2 3345555555 5555544 4555544
Q ss_pred HHH----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q psy9906 87 EFI----KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDM 134 (191)
Q Consensus 87 ~~i----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~ 134 (191)
..+ -..++++..+++..+|+.+..|++.|...-+- .++-|.|-++
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~---~~mePhL~~L 491 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM---EEMEPHLEQL 491 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH---HhhhhHhhhc
Confidence 433 34555566678899999999999999877531 2344444443
No 114
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=63.23 E-value=50 Score=27.70 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcC-CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-----CCCCCchHHHH
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYE-FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG-----DLKSWPELLPT 130 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~-i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-----~~~~Wpell~~ 130 (191)
+-....|..|.-.+.+.+.+++.. .-.+.+..+-..++..+..+...=+..++.+++-++-.- -..-+.++.|.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~ 133 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPV 133 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Confidence 345779999999999999877642 223445667777777787755444455666666666552 23456788888
Q ss_pred HHHHhhcCCc--cccchhhhHHH
Q psy9906 131 LNDMLDSQDY--NVCELLPVLLP 151 (191)
Q Consensus 131 L~~~l~~~~~--~~~~~~l~~L~ 151 (191)
|...+..+.. ..+..++.+|.
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLa 156 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALA 156 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHH
Confidence 8888876632 23334444443
No 115
>KOG1240|consensus
Probab=62.07 E-value=21 Score=35.50 Aligned_cols=56 Identities=27% Similarity=0.213 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCccccchhhhHHHHHhhh------------------cCCCcHHHHHHHHHHHHHHhhhhhhh
Q psy9906 127 LLPTLNDMLDSQDYNVCELLPVLLPILKET------------------LFHHDWEIKESGILALGAIAEVNKSI 182 (191)
Q Consensus 127 ll~~L~~~l~~~~~~~~~~~l~~L~~l~e~------------------l~~~~~~~r~~~i~~~~ai~~~~~~~ 182 (191)
++|-|.+.++++.+.....|+.+|..+++- +-+++-=+|.+++..+.+|+.-.+.+
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 667777777777777778888888777761 13456557777777777776655543
No 116
>KOG0212|consensus
Probab=60.85 E-value=1e+02 Score=28.49 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHhhcCCccccchhhhHH-HHHhh
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASK---GDLKSWPELLPTLNDMLDSQDYNVCELLPVLL-PILKE 155 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~---e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L-~~l~e 155 (191)
.+-..++.++.+++..+|-.+|+.+-.|++. +..--.++++..+..+...++.+. .++...+ +.+++
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V-~~~aeLLdRLikd 154 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNV-RGGAELLDRLIKD 154 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHH
Confidence 3444566677889999999999886655554 555667888888888877766544 4555555 44443
No 117
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=60.79 E-value=26 Score=26.57 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=21.2
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFPPGV 85 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~ 85 (191)
+..+..+....+|++|...|..++++.
T Consensus 5 d~~l~~li~~I~rdfV~sWY~~Is~d~ 31 (185)
T PF02194_consen 5 DEALHELIDLILRDFVNSWYSKISPDP 31 (185)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCcH
Confidence 456778888999999999777776554
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=59.86 E-value=54 Score=22.53 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=38.7
Q ss_pred HHHHH-HHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhh----hCCCChhHHhHHHHHH
Q psy9906 10 LIQIL-QLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTK----LTSEDEPTRSLSGLIL 70 (191)
Q Consensus 10 ~~~l~-~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~----~~~~~~~vRq~A~i~L 70 (191)
+.+++ .+|....++|..+|-.|=+.|-++.+. .....++-+|+.. ....++.||..|.++-
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld 92 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLD 92 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 34443 355555678999999998888887652 3344454444421 2356778999886654
No 119
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=59.22 E-value=9.9 Score=28.71 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=27.2
Q ss_pred CCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHh
Q psy9906 120 DLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILK 154 (191)
Q Consensus 120 ~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~ 154 (191)
+-.++|+|++.|++.+..+ ++..+.-++++++.+-
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 3457899999999999876 5667788888876664
No 120
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=59.09 E-value=38 Score=25.59 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHhhcCCcc
Q psy9906 65 LSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSWPELLPTLNDMLDSQDYN 141 (191)
Q Consensus 65 ~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~~~l~~~~~~ 141 (191)
++.-.|.+.++.+ +..+..|=+.+++-+.........++..+++.|++..+ .+.|. -+..+++.+.--..+
T Consensus 37 LG~~IL~~~fk~h-----~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~-~l~~~ld~l~~lp~~ 110 (158)
T PF14676_consen 37 LGIQILLELFKVH-----EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSS-KLKELLDYLSFLPGD 110 (158)
T ss_dssp HHHHHHHHHHHH------GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-H-HHHGGGGGTTTS-HH
T ss_pred HHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHH-HHHHHHHHHHhCCHH
Confidence 8888888888876 46666777777776554222222467899999999873 24443 333344444322222
Q ss_pred ccchhhhHH---------------HHHhhhcCCCcHHHHHHHHHH
Q psy9906 142 VCELLPVLL---------------PILKETLFHHDWEIKESGILA 171 (191)
Q Consensus 142 ~~~~~l~~L---------------~~l~e~l~~~~~~~r~~~i~~ 171 (191)
...+.+.++ -.++..+|+.+.+.|.+|+--
T Consensus 111 ~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~G 155 (158)
T PF14676_consen 111 VAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVNG 155 (158)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 222222222 223346888999999988643
No 121
>KOG4224|consensus
Probab=56.19 E-value=41 Score=29.42 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906 41 HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTI 115 (191)
Q Consensus 41 ~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~I 115 (191)
..||..-|..++. -..+..++--|.-.|+|.--.+ +..+..|+ ..+.+.+.+.+-.++.-+..|++.+
T Consensus 331 dagfl~pLVrlL~--~~dnEeiqchAvstLrnLAass-----e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 331 DAGFLRPLVRLLR--AGDNEEIQCHAVSTLRNLAASS-----EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred cccchhHHHHHHh--cCCchhhhhhHHHHHHHHhhhh-----hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 3567777777775 2345557777777888776533 22233333 2566667788899999999999999
Q ss_pred HhhCCC-CCC--chHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 116 ASKGDL-KSW--PELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 116 a~~e~~-~~W--pell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
+-.|-. ... -.++|.|+.++.+.+...+..+...|.-++++
T Consensus 404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 988722 111 24666677777777777777777777666554
No 122
>KOG0904|consensus
Probab=56.10 E-value=51 Score=31.89 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA 76 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~ 76 (191)
.-.++| +..-||+.+|+=|-+-|+++.. .++..||+++.+..+-.+.----++-.+||+.+..
T Consensus 613 ~aleLL-d~nypD~~VR~fAV~~L~~Lsd-d~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N 675 (1076)
T KOG0904|consen 613 LALELL-DCNYPDPNVRAFAVRCLEQLSD-DDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRN 675 (1076)
T ss_pred HHHHHh-cCCCCcHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhc
Confidence 334444 2345799999999999976655 78999999999876654444445556788888874
No 123
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.99 E-value=91 Score=23.94 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT----HPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
-+-.+|+-.+++|..+|..|-+.+...-+ +|. ..+++..+. ++.+..+|..|-..++....+|=+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~---ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALE---TSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhh---CCCChHHHHHHHHHHHHHHHHhHH
Confidence 36678888899999999999999997765 343 455555554 567889999999999998887643
No 124
>KOG4224|consensus
Probab=55.83 E-value=81 Score=27.66 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHhhc---------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-hhhcCCChhHHHHHHH
Q psy9906 22 SPDNLIQRAVQHKLEQLNT---------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-ARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~---------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-~~W~~i~~~~k~~ik~ 91 (191)
+-|-.+|+.|...|..+.. +.|-.++|..++ ++.+..+|-.|..-+-|.-. ..=.++-.+.-..+-.
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll---~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~ 254 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL---KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVP 254 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh---ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHH
Confidence 4467778888887776542 356677777776 35677888888877766542 1111111222223445
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCC--CCchHHHHHHHHhhcC
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKG-DLK--SWPELLPTLNDMLDSQ 138 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~--~Wpell~~L~~~l~~~ 138 (191)
.+++.+.+++++++-+++.++..++..+ |.. .=..-+|.++.+++++
T Consensus 255 ~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~ 304 (550)
T KOG4224|consen 255 ALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP 304 (550)
T ss_pred HHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc
Confidence 7888899999999999999999999887 321 1235677888888776
No 125
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=55.47 E-value=15 Score=28.82 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 111 ~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
++...-..-|...|++.++.+..+...-.+........++..+.+--.+.+...|.+.=.++|+.+.+|-+
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 33444444567789998888777766443333344455556666544445566777666677876665543
No 126
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=55.10 E-value=39 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906 24 DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNN 73 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~ 73 (191)
|....+++.+.|..... ++.... +.++. ..-.+..||++|.-.|++.
T Consensus 57 ~~~e~~e~~~ll~~W~~-~~~~~a-L~LL~-~~~~~~~Vr~yAV~~L~~~ 103 (184)
T smart00145 57 DADEVAQALSLLKKWAP-LDPEDA-LELLS-PKFPDPFVRAYAVERLESA 103 (184)
T ss_pred CHHHHHHHHHHHHcCCC-CCHHHH-HHHhC-ccCCCHHHHHHHHHHHHhC
Confidence 55556666666665432 333333 34443 1233667777777666553
No 127
>KOG1820|consensus
Probab=54.89 E-value=2.1e+02 Score=27.70 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=71.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh-cCCChhHHHHHHHHHH
Q psy9906 16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF-YEFPPGVSEFIKQECL 94 (191)
Q Consensus 16 lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W-~~i~~~~k~~ik~~ll 94 (191)
+|..+..--...|..+-..+..+.+.-....+.=.|+...++..+++|.....+|-+.+...= .....+....++..++
T Consensus 341 lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~ 420 (815)
T KOG1820|consen 341 LLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLI 420 (815)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHh
Confidence 333333334566666666666666533333333444443467789999999999988888643 3344566667777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 95 SAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 95 ~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
....+.+.-||.+...+++.+.+.-
T Consensus 421 ~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 421 KHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999999998886
No 128
>KOG1820|consensus
Probab=53.43 E-value=2.2e+02 Score=27.55 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=83.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcC------CChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTH------PDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE 87 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~------~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~ 87 (191)
.+..+..|++=..|++|-+.+...-.. .++...+...+.. ..+.+.++=+.|+.+|.-.-.. +....+.
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~----lr~~~~~ 332 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK----LRPLFRK 332 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh----cchhhHH
Confidence 345567788999999987777653322 2333333332221 2345667778888887665542 2222333
Q ss_pred HHHH---HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCcccc---------------------
Q psy9906 88 FIKQ---ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC--------------------- 143 (191)
Q Consensus 88 ~ik~---~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~--------------------- 143 (191)
+.+. .++..+.+--+.+|..+-.++-.++... .=-++.+.+..++.+.++..+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 3332 3333344444555555555544444421 112344445455554444332
Q ss_pred chhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Q psy9906 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 144 ~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~ 176 (191)
+..-.+.+.+....-+.+.++|.+|..+++++.
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 222223344455556678999999999888854
No 129
>KOG1020|consensus
Probab=52.74 E-value=83 Score=32.35 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLP 151 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~ 151 (191)
.|+..+.++...+|.++-.|++.|+..|+- -.=|++...+-+.+.++....+|+|+.+++
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvG 880 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVG 880 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHh
Confidence 666677777888999999999999988842 334677777777776666677777777763
No 130
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=52.48 E-value=37 Score=28.29 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=47.3
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHhhC-CC-CCC-chHHH
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGD----PSPLIRATVGILITTIASKG-DL-KSW-PELLP 129 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~----~~~~ir~~~~~~i~~Ia~~e-~~-~~W-pell~ 129 (191)
+.+..+...|+-.|-+.+...=..-....++.+ ..+++.+.+ ++..+...+..+++.+.+.+ +. .-| .+.++
T Consensus 116 ~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l-~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 116 RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL-PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVS 194 (312)
T ss_dssp -SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH-HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCccccchHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHH
Confidence 458889999998888888744222212122344 566666654 23455677888999998887 21 223 57888
Q ss_pred HHHHHh
Q psy9906 130 TLNDML 135 (191)
Q Consensus 130 ~L~~~l 135 (191)
.+...+
T Consensus 195 ~l~~iL 200 (312)
T PF03224_consen 195 PLFDIL 200 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888888
No 131
>KOG1062|consensus
Probab=52.36 E-value=1.2e+02 Score=29.20 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
.++|.-..+-..+-+.|...++.||++++.|...+.+..+ +.=.-|++....++.+.+.....+++.++
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~ 203 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLI 203 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHH
Confidence 4667666666677778888999999999999999999882 22122333444555554533333333333
No 132
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=51.79 E-value=32 Score=18.51 Aligned_cols=25 Identities=0% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIA 116 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia 116 (191)
.|++.+.+++..++..++.++..|+
T Consensus 16 ~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 16 ALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555666778899999998888775
No 133
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=51.35 E-value=22 Score=20.46 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=18.6
Q ss_pred hHHHHHhhhcCCCcHHHHHHHHHH
Q psy9906 148 VLLPILKETLFHHDWEIKESGILA 171 (191)
Q Consensus 148 ~~L~~l~e~l~~~~~~~r~~~i~~ 171 (191)
.+++.+...+.+++..+|++++..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 566777777888888999988754
No 134
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=49.18 E-value=45 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHh
Q psy9906 24 DNLIQRAVQHKLEQLNTHPDFNNYLIFVLT 53 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~~~~~~~L~~il~ 53 (191)
|..+|+-|-+.|+.+.. .+...||.++.+
T Consensus 84 d~~VR~yAV~~L~~~~d-deL~~yLpQLVQ 112 (169)
T cd00869 84 DQEVRAHAVQWLARLSN-DELLDYLPQLVQ 112 (169)
T ss_pred ChHHHHHHHHHHHhCCH-HHHHHHHHHHHH
Confidence 34455555554444432 234444444443
No 135
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=48.47 E-value=77 Score=24.34 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
.....+-..+-..+.+++..|+..++.++..+++.+
T Consensus 151 ~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 151 EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 333444444444556788999999999999999887
No 136
>KOG0414|consensus
Probab=48.47 E-value=1.7e+02 Score=29.43 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHH--
Q psy9906 22 SPDNLIQRAVQHKLEQLNT-HPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECL-- 94 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~-~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll-- 94 (191)
+|++-+|-.+-..+-.+.- .|+ +..+|..-+ ...++.+|..|...|-+.|-+.= -.+|..+-
T Consensus 972 sp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL---~D~~~~vRkta~lvlshLILndm--------iKVKGql~eM 1040 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRL---RDESPSVRKTALLVLSHLILNDM--------IKVKGQLSEM 1040 (1251)
T ss_pred CCCceeeecchheccchhhhcccccchhhHHHHHHh---cCccHHHHHHHHHHHHHHHHhhh--------hHhcccHHHH
Confidence 4555666666666665442 343 333444443 45678899999988888776432 12333333
Q ss_pred -HhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC
Q psy9906 95 -SAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ 138 (191)
Q Consensus 95 -~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~ 138 (191)
.+|.++++.|+..+-....++.... +.-=+|+|+++..++++
T Consensus 1041 A~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 2456677777777666666666655 22224555555555554
No 137
>KOG1062|consensus
Probab=47.75 E-value=2.7e+02 Score=26.89 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=57.1
Q ss_pred CChhHHhHHHHHHHHhhhhhhc--------------CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC
Q psy9906 58 EDEPTRSLSGLILKNNVRARFY--------------EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS 123 (191)
Q Consensus 58 ~~~~vRq~A~i~LKn~i~~~W~--------------~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~ 123 (191)
.+...|-+|+=.|-+++...=. ..++..-+.=|..++++|.+++..||+.+-+..-.+...- +
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~---N 382 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES---N 382 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc---c
Confidence 3556788888777777764221 1466777777889999999999999988877777766433 4
Q ss_pred CchHHHHHHHHhhcCCccc
Q psy9906 124 WPELLPTLNDMLDSQDYNV 142 (191)
Q Consensus 124 Wpell~~L~~~l~~~~~~~ 142 (191)
-..++..|+.++.+.+++.
T Consensus 383 v~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 383 VRVMVKELLEFLESSDEDF 401 (866)
T ss_pred HHHHHHHHHHHHHhccHHH
Confidence 4567777777776665443
No 138
>KOG1967|consensus
Probab=46.71 E-value=1.1e+02 Score=29.79 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=59.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHhhcCCccccchhhhHHHHHh-h-------h---c
Q psy9906 93 CLSAIGDPSPLIRATVGILITTIASKGD----LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK-E-------T---L 157 (191)
Q Consensus 93 ll~~l~~~~~~ir~~~~~~i~~Ia~~e~----~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~-e-------~---l 157 (191)
+++.+.+.+..+|..+-..++.+..+-+ -.+-|.++|-|++.+.-+|...+-..+.+++.+- + + +
T Consensus 872 l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tl 951 (1030)
T KOG1967|consen 872 LVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTL 951 (1030)
T ss_pred HHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHH
Confidence 3444445566777777777777777653 2456999999999999888887777777774433 2 1 1
Q ss_pred C--------CCc---HHHHHHHHHHHHHHhh
Q psy9906 158 F--------HHD---WEIKESGILALGAIAE 177 (191)
Q Consensus 158 ~--------~~~---~~~r~~~i~~~~ai~~ 177 (191)
+ +++ --+|+.|+++++++.+
T Consensus 952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 952 VPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 1 122 6799999999999988
No 139
>KOG0392|consensus
Probab=46.65 E-value=2.6e+02 Score=28.65 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhc---------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH--HHHHHHH
Q psy9906 26 LIQRAVQHKLEQLNT---------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE--FIKQECL 94 (191)
Q Consensus 26 ~~r~~AE~~L~~~~~---------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~--~ik~~ll 94 (191)
-+|+.||..|+.+.+ -|.++.+|+.-+... .+.+--.+..+. .+...|......-+. ..-..++
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~--~~~~d~~~~s~~---vf~s~~~~m~s~l~~~~~~l~~l~ 822 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGL--IDGNDEFLSSFE---VFNSLAPLMHSFLHPLGSLLPRLF 822 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhcc--CCCCcchhhhHH---HHHHHHHhhhhhhhhhhhhhhHHH
Confidence 469999999998664 355666666666421 121111111111 112345444333333 2223445
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhhhc----------------
Q psy9906 95 SAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKETL---------------- 157 (191)
Q Consensus 95 ~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e~l---------------- 157 (191)
.++.++...+|.+++.||..+++....+.=-.++..+.-++... +.+.+.++-.++..++..+
T Consensus 823 ~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 823 FFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 55567889999999999999888763222122222222222221 2334455555555554421
Q ss_pred ---CCCcHHHHHHHHHHHHHHh
Q psy9906 158 ---FHHDWEIKESGILALGAIA 176 (191)
Q Consensus 158 ---~~~~~~~r~~~i~~~~ai~ 176 (191)
-+..-.+|+++=.++..++
T Consensus 903 r~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHh
Confidence 1123457887777776643
No 140
>KOG2199|consensus
Probab=46.12 E-value=42 Score=29.37 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=50.8
Q ss_pred CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhchhhcccC
Q psy9906 121 LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCSS 190 (191)
Q Consensus 121 ~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~~~~~~~~ 190 (191)
.++| +++=.+.+.+.+. + +++-.||+.|...+-+.+.++-.-|+-.++|++..+..+.-+-.||.
T Consensus 23 ~enW-~~IlDvCD~v~~~-~---~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr 87 (462)
T KOG2199|consen 23 SENW-SLILDVCDKVGSD-P---DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSR 87 (462)
T ss_pred cccH-HHHHHHHHhhcCC-C---cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 4678 4555666766653 2 78888999999988888999999999999999999888776666664
No 141
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=45.21 E-value=65 Score=20.50 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=28.3
Q ss_pred hhcCCChhHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHH
Q psy9906 77 RFYEFPPGVSEFIKQECLSAIGDPSPL-IRATVGILITT 114 (191)
Q Consensus 77 ~W~~i~~~~k~~ik~~ll~~l~~~~~~-ir~~~~~~i~~ 114 (191)
.|..+++++|+.+-+++...|...... |+......+..
T Consensus 16 ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~ 54 (68)
T PF06628_consen 16 LYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYK 54 (68)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence 477789999999999999999886555 77655444433
No 142
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=44.86 E-value=48 Score=22.53 Aligned_cols=52 Identities=23% Similarity=0.170 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh----hcC--CccccchhhhHHHHH
Q psy9906 101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDML----DSQ--DYNVCELLPVLLPIL 153 (191)
Q Consensus 101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l----~~~--~~~~~~~~l~~L~~l 153 (191)
+-.+|..+|.+++.|++. |....|++-|.+...+ .++ +.....||+..|..+
T Consensus 19 h~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999977 4455566666555443 322 334566666666544
No 143
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=44.75 E-value=74 Score=24.21 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcC---------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 8 EGLIQILQLLKESQSPD---NLIQRAVQHKLEQLNTH---------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 8 ~~~~~l~~lL~~~~s~d---~~~r~~AE~~L~~~~~~---------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
.++..|.+.+++...++ .+.-.-+-..+.++-.+ +.|..-...... .+..+..+-|.|.-.|++.+.
T Consensus 11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn-~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN-SSAMDASILQRSLAILESIVL 89 (160)
T ss_pred cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc-cccccchHHHHHHHHHHHHHh
Confidence 46777888887765321 23333344444443332 235555555553 233478999999999999998
Q ss_pred hhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q psy9906 76 ARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND 133 (191)
Q Consensus 76 ~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~ 133 (191)
..-.....-.++.==+.|+..|..+++.++...-..+-.+...-++.+|.++...+.+
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~ 147 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQ 147 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5321111111112224677788888888887777777777666667777777666543
No 144
>KOG1020|consensus
Probab=44.30 E-value=3.9e+02 Score=27.86 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhc-CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHH
Q psy9906 28 QRAVQHKLEQLNT-HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRA 106 (191)
Q Consensus 28 r~~AE~~L~~~~~-~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~ 106 (191)
.+.+-..|-.... ..+|-.||-.|+....+..+.+|.=|.=.|-+.+...-.-+. +..++..+-.-+.++...||.
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVRE 873 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVRE 873 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHH
Confidence 3344444443332 246777777777665666778888888777777664322221 123555556667788899999
Q ss_pred HHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHH
Q psy9906 107 TVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIK 165 (191)
Q Consensus 107 ~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r 165 (191)
++-+.++..+-.. |+--+.....+.+.+.++....+.-+..+++-+|+.. ++...+
T Consensus 874 AaldLvGrfvl~~-~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~i 929 (1692)
T KOG1020|consen 874 AALDLVGRFVLSI-PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET--PDFSKI 929 (1692)
T ss_pred HHHHHHhhhhhcc-HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhhH
Confidence 9888888766554 3334445555555555555566788888888888875 444433
No 145
>KOG0915|consensus
Probab=44.04 E-value=1.1e+02 Score=31.48 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 83 PGVSEFIKQECLSAIG---DPSPLIRATVGILITTIASKG---DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~---~~~~~ir~~~~~~i~~Ia~~e---~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
+..+.++|+-+-.... +|+..|+++...++..+...- -..-..|.+.+|+-.+++..+..+|++...|.-+-
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4445566655555443 689999999999999887542 11224588888888888888999999988885554
No 146
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.78 E-value=79 Score=30.10 Aligned_cols=84 Identities=10% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhC---------CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKG---------DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE------- 155 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e---------~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e------- 155 (191)
.+.+.|.+++..+|..+-++.+.++.+- +|+.-.+|+.-+.+.+++.+|-.+.-++.++..+++
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 4555666778888888777777776543 233444566666677777788888888888877776
Q ss_pred -----------hcCCCcHHHHHHHHHHHHHH
Q psy9906 156 -----------TLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 156 -----------~l~~~~~~~r~~~i~~~~ai 175 (191)
.+.+..-.+|.-||..+...
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 22334456777777665543
No 147
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=43.55 E-value=1.1e+02 Score=21.66 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF 78 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W 78 (191)
.+..++.+......+.+ .+...++.|..+-...+ +-..+-.++......+ .+|+.+++.|
T Consensus 52 al~d~i~~a~~~~~~~~-s~~eIe~~ie~~~e~~~~~~~l~~~vl~el~~s~---------~~k~~~k~~~ 112 (113)
T PF12363_consen 52 ALADIIYAATAHEKKRP-SREEIEDYIEDIIEDEDDIEELFDEVLKELKKSN---------FFKRAVKKFL 112 (113)
T ss_pred HHHHHHHHHhcccCCCC-CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhCh---------hHHHHHHHHh
Confidence 34444444444445556 89999999998555455 5555555554333222 4555555554
No 148
>KOG1059|consensus
Probab=43.21 E-value=1.8e+02 Score=27.79 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+.|++.|-++.+.+.+..+.| +..-..-|+-++.+|.+.+.+||-.+-+.+-.|+..+
T Consensus 310 dsDqNLKYlgLlam~KI~ktH-----p~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 310 DSDQNLKYLGLLAMSKILKTH-----PKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred cCCccHHHHHHHHHHHHhhhC-----HHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence 457788888888888887766 3334566788899999988888877766666665544
No 149
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=42.34 E-value=3.1e+02 Score=26.09 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=70.8
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-----HHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-----FIKQECLSAIGD--PSPLIRATVGILITT 114 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-----~ik~~ll~~l~~--~~~~ir~~~~~~i~~ 114 (191)
-++.++|..++.. ...+..+- +-++.+--.+.. ++.... .+=..+++.|.. .+..+--|+..+...
T Consensus 532 ~~llp~L~~~L~~-g~~~dDl~-LE~Vi~~gtla~-----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 532 YNLLPWLKDLLKP-GASEDDLL-LEVVILLGTLAS-----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred CCHHHHHHHHhCC-CCCChHHH-HHHHHHHHHHHC-----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 5678888888852 22233333 333333222221 222222 233455555553 577888899999999
Q ss_pred HHhhCCC-----CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHH
Q psy9906 115 IASKGDL-----KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKE 166 (191)
Q Consensus 115 Ia~~e~~-----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~ 166 (191)
+..++.- .. .+....+++++.+.|...+..+=.+|.++.|. +.+|..|.
T Consensus 605 ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~--d~~w~~ri 658 (708)
T PF05804_consen 605 LLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY--DEEWAERI 658 (708)
T ss_pred HHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--CHHHHHHh
Confidence 9988721 12 46778899999988888888888888888874 45565444
No 150
>KOG1240|consensus
Probab=41.82 E-value=4e+02 Score=27.21 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHhhcCCcccc-----------------chhh
Q psy9906 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP-ELLPTLNDMLDSQDYNVC-----------------ELLP 147 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp-ell~~L~~~l~~~~~~~~-----------------~~~l 147 (191)
...|.+.+...+.++++.||+.+-+.|.-++.--....=. -+++.|..++.+.|+..+ -..=
T Consensus 576 ~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se 655 (1431)
T KOG1240|consen 576 HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE 655 (1431)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH
Confidence 3456666666777889999999998877776655443333 489999999998876542 1233
Q ss_pred hHHHHHhhhcCCCcHHHHHHHHHHHHHH
Q psy9906 148 VLLPILKETLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 148 ~~L~~l~e~l~~~~~~~r~~~i~~~~ai 175 (191)
++++++.+.+.+++-.+-..|+.++..+
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~L 683 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSIL 683 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHH
Confidence 4567777888888888888887776653
No 151
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=41.49 E-value=99 Score=23.38 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+.+.-+|.+|.+.+-+.+.+ ......+-..+-..+.+.+..|+..++.++..+++.+
T Consensus 116 s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 116 SENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred CCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 44555666666666555544 1222233323333344578899999999999999884
No 152
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=41.47 E-value=2.9e+02 Score=25.57 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhc-CCC--hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906 7 EEGLIQILQLLKES--QSPDNLIQRAVQHKLEQLNT-HPD--FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF 81 (191)
Q Consensus 7 ~~~~~~l~~lL~~~--~s~d~~~r~~AE~~L~~~~~-~~~--~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i 81 (191)
...+..+++.|... .+|++..|+.+-.-+..+-. .|+ -..++.+++. +.....+|-.+.-++|..+...|..-
T Consensus 436 ~~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe--~c~~~~~k~~~I~~lKd~i~~a~~~~ 513 (633)
T PF08568_consen 436 SEVFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETRFKFIRDLLE--NCPFESLKASAIGWLKDEILKALQSS 513 (633)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhHHHHHHHHHh--cCCCHhHHHHHHHHHHHHHHHHhccC
Confidence 34567777777665 47899999999999887654 454 4556777775 56788999999999999999887654
Q ss_pred C
Q psy9906 82 P 82 (191)
Q Consensus 82 ~ 82 (191)
.
T Consensus 514 ~ 514 (633)
T PF08568_consen 514 D 514 (633)
T ss_pred C
Confidence 3
No 153
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.21 E-value=1e+02 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.028 Sum_probs=18.5
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhh
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV 74 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i 74 (191)
|....+|..++......+..+|..|..-||+..
T Consensus 476 ~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 476 PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 555555555554223345566776666676554
No 154
>KOG2259|consensus
Probab=40.92 E-value=3.2e+02 Score=25.92 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhc-CCChHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCChhHH-----------HHHHH
Q psy9906 25 NLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFPPGVS-----------EFIKQ 91 (191)
Q Consensus 25 ~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k-----------~~ik~ 91 (191)
-++|++|-..+-.+.. .|+|....++.+..+- .....||.-|.-.|+....+ ..+.++.- ..||+
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe 464 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQILESLEDRSVDVRE 464 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHH
Confidence 3799999999988775 6999877777776433 33557999998888876654 22222211 12333
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHh
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKG--DLKSWPELLPTLNDML 135 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e--~~~~Wpell~~L~~~l 135 (191)
.+-+.|....-.=.+-+-.|+..+.+.- ||++=++.+.-+...=
T Consensus 465 ~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 465 ALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIG 510 (823)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHh
Confidence 3334433211111122334444444443 6666677766666543
No 155
>KOG2759|consensus
Probab=40.17 E-value=93 Score=27.50 Aligned_cols=74 Identities=15% Similarity=0.017 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906 45 NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120 (191)
Q Consensus 45 ~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~ 120 (191)
...|..++. ++.++.+=..|+-=+-.+|+.+-....--+|-.-|+.+++.|..+++.||-.+-.++-.+..+.|
T Consensus 368 lkiL~~lLe--~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~w 441 (442)
T KOG2759|consen 368 LKILIKLLE--TSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHNW 441 (442)
T ss_pred HHHHHHHHh--cCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Confidence 444666664 45567777777777777777665555555666789999999999999999988888888876653
No 156
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.16 E-value=2.1e+02 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhCC--CCHHHH
Q psy9906 87 EFIKQECLSAIGD--PSPLIR 105 (191)
Q Consensus 87 ~~ik~~ll~~l~~--~~~~ir 105 (191)
..+++.++..+.+ .++.+|
T Consensus 513 ~~v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 513 RKVQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred hHHHHHHHHHHcCCCCChHHH
Confidence 3455555555543 345555
No 157
>KOG2973|consensus
Probab=40.15 E-value=1.6e+02 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH 41 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~ 41 (191)
.+.++..=..++++.+|+.|-+.+-.+...
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~ 33 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR 33 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc
Confidence 344555555667778999888888877664
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=39.20 E-value=3.1e+02 Score=25.24 Aligned_cols=153 Identities=18% Similarity=0.103 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc-CCC
Q psy9906 7 EEGLIQILQLLKESQSP-DNLIQRAVQHKLEQLNT-HPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY-EFP 82 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~-~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~-~i~ 82 (191)
++.+..++.+|.+.+.. |+.++......|.++-+ +|. ....++.-+....+.+..+|--+.-.++..+..-=. .+.
T Consensus 91 ~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 91 PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp -T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 34455566666666655 45666666666665554 221 222222222111234666777766666666653211 133
Q ss_pred --hhHHHHHHHHHHHhhCC-C---------------------CHHHHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHhh
Q psy9906 83 --PGVSEFIKQECLSAIGD-P---------------------SPLIRATVGILITTIASKG--DLKSWPELLPTLNDMLD 136 (191)
Q Consensus 83 --~~~k~~ik~~ll~~l~~-~---------------------~~~ir~~~~~~i~~Ia~~e--~~~~Wpell~~L~~~l~ 136 (191)
++..++|...+...|.+ + ...=+..+..+|..-+..+ ++-.-++.+..+++++.
T Consensus 171 p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~ 250 (556)
T PF05918_consen 171 PQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLR 250 (556)
T ss_dssp --HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHH
Confidence 55566666665555543 1 2222344556666666555 33344677777766665
Q ss_pred cCCc--cccchhhhHHHHHhhhcCC
Q psy9906 137 SQDY--NVCELLPVLLPILKETLFH 159 (191)
Q Consensus 137 ~~~~--~~~~~~l~~L~~l~e~l~~ 159 (191)
..-+ ...-.+-..+.|+++.++.
T Consensus 251 ~Alp~fs~~v~Sskfv~y~~~kvlP 275 (556)
T PF05918_consen 251 QALPFFSRGVSSSKFVNYMCEKVLP 275 (556)
T ss_dssp HHGGG-BTTB--HHHHHHHHHHTCC
T ss_pred HhhHHhcCCCChHHHHHHHHHHhcC
Confidence 4211 1123335566888887654
No 159
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=1.9e+02 Score=25.94 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
+-..|.+.+ ++..+||.-..+|+..++-|-| ..||+.-.+ ...+.++-+.....+|+.+..++ ..+++++.+|+
T Consensus 13 ld~kl~q~F-~grvVrKdLtk~Lk~g~nvPvYVlEyLlg~yc--a~~dd~iv~~g~q~vk~il~enY--vrPdEaEkvKs 87 (683)
T COG4930 13 LDNKLKQCF-GGRVVRKDLTKELKLGKNVPVYVLEYLLGEYC--ALGDDQIVEQGEQKVKSILRENY--VRPDEAEKVKS 87 (683)
T ss_pred HHHHHHHHc-CCceehhHHHHHHhhccCCcHHHHHHHHHHHh--ccCccHHHHHHHHHHHHHHHHhc--CCchHHHHHHH
Confidence 334444443 4678999999999888777776 566777665 45677788888889999999877 44788888998
Q ss_pred HHHHh
Q psy9906 92 ECLSA 96 (191)
Q Consensus 92 ~ll~~ 96 (191)
.|.+-
T Consensus 88 ~ire~ 92 (683)
T COG4930 88 KIREE 92 (683)
T ss_pred HHhhc
Confidence 88763
No 160
>KOG1943|consensus
Probab=38.61 E-value=1.4e+02 Score=29.67 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh-------
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE------- 155 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e------- 155 (191)
+.-+.+=+.+++++.+.+..||-.+|.-++.|+.+.++.-=.+.+..+++...-. ++..-+|++.+|..+..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4455777888889999999999999999999999997222223444444432222 24445666666543321
Q ss_pred -----------hc--------CCCcHHHHHHHHHHHHHHhhhhhhh
Q psy9906 156 -----------TL--------FHHDWEIKESGILALGAIAEVNKSI 182 (191)
Q Consensus 156 -----------~l--------~~~~~~~r~~~i~~~~ai~~~~~~~ 182 (191)
.+ ....-.+|++|--+.-|..-+-++-
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~ 462 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS 462 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh
Confidence 11 1235679998877777766554443
No 161
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.60 E-value=40 Score=24.03 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCC-hhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhh
Q psy9906 26 LIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSED-EPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAI 97 (191)
Q Consensus 26 ~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~-~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l 97 (191)
+.|++-.+.+.+. .|....++..++....+.. ......+.-.++..+. |..+..-....+-+.+++.|
T Consensus 67 ~r~~~l~~~l~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 67 ERRRELKDALRSN--SPDILEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLL 135 (148)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHc
Confidence 3444444444433 2556666677665322222 5666666677777776 65432222222344444444
No 162
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=38.36 E-value=3.4e+02 Score=25.47 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhC-------CCChhHHhHH-HHHHHHhhhh------
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLT-------SEDEPTRSLS-GLILKNNVRA------ 76 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~-------~~~~~vRq~A-~i~LKn~i~~------ 76 (191)
..+++++....+.+++-+..|-+.|=.|-.+-+|...+..|+.... ++..-+|+.- -+.|.|.|.+
T Consensus 431 ~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~a 510 (898)
T COG5240 431 KYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQA 510 (898)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3467777788888888898888888888877788888777775432 1222455433 3566666642
Q ss_pred ----hhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---------CCCCCchHHHHHHHHhhc
Q psy9906 77 ----RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG---------DLKSWPELLPTLNDMLDS 137 (191)
Q Consensus 77 ----~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e---------~~~~Wpell~~L~~~l~~ 137 (191)
..+.-+.-..+.|+..+-.++.+.+..+|.-++-.+..+-..| +-..-|.+-..+...+..
T Consensus 511 Lskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~dipsle~~l~~yIse 584 (898)
T COG5240 511 LSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDIPSLELELIGYISE 584 (898)
T ss_pred HHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCcchhHHhhheeecc
Confidence 1222344555678877778888999999988888877775544 223456677777777765
No 163
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=37.81 E-value=1.9e+02 Score=22.30 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906 4 QPQEEGLIQILQLLKES-QSP-DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF 81 (191)
Q Consensus 4 ~p~~~~~~~l~~lL~~~-~s~-d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i 81 (191)
.|+++....|..++..- +.+ ..+.|..-=..=..+...|+....++.-+ +-..+..++..-. ++ ..|..+
T Consensus 4 ~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv--~w~~~~~~~~~~~-ll-----~~W~~~ 75 (184)
T PF00613_consen 4 KPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSV--DWWNPEEVSEAYQ-LL-----LQWPPI 75 (184)
T ss_dssp ---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTS--TTTSHHHHHHHHH-HH-----HTSHCT
T ss_pred CcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhC--CCCchhhHHHHHH-HH-----HcCCCC
Confidence 46777777777776532 111 23333322221122334566655544422 1222223433322 22 349887
Q ss_pred ChhHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC
Q psy9906 82 PPGVSEFIKQECLSAIGD--PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ 138 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~--~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~ 138 (191)
++.+ .++.|.. +++.||..+..++..... ++=-.++|.|+|.+.-.
T Consensus 76 ~p~~-------AL~LL~~~f~~~~VR~yAv~~L~~~~d----~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 76 SPED-------ALELLSPNFPDPFVRQYAVRRLESLSD----EELLFYLPQLVQALRYE 123 (184)
T ss_dssp THHH-------HHHCTSTT---HHHHHHHHHHHCTS-H----HHHHHHHHHHHHHGGGS
T ss_pred CHHH-------HHHHHHhhccHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHHheec
Confidence 7663 4566654 457777666665544221 12334666677766644
No 164
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=37.75 E-value=96 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+-..|..+++.|.++++.||..+-.|+..+..+-
T Consensus 394 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 394 QLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999987554
No 165
>KOG1243|consensus
Probab=37.61 E-value=2.2e+02 Score=26.83 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCC-hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC
Q psy9906 44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFP-PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122 (191)
Q Consensus 44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~-~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~ 122 (191)
+...++.++. ..+.++|..=..++-++|.. ++ +.....|=.++..++.+.++.+|-+.-.++..+|..-.++
T Consensus 331 i~p~l~kLF~---~~Dr~iR~~LL~~i~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 331 IIPVLLKLFK---SPDRQIRLLLLQYIEKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred hhhhHHHHhc---CcchHHHHHHHHhHHHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 5666666663 46778887766666666653 33 3444567778888888999999999999999999887544
Q ss_pred CC-chHHHHHHHHhh
Q psy9906 123 SW-PELLPTLNDMLD 136 (191)
Q Consensus 123 ~W-pell~~L~~~l~ 136 (191)
+- -|++..+...-.
T Consensus 404 ~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 404 NLNGELLRYLARLQP 418 (690)
T ss_pred hhcHHHHHHHHhhCc
Confidence 32 366666665544
No 166
>KOG2549|consensus
Probab=37.59 E-value=3.3e+02 Score=25.06 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=74.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-------CChh
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTHPD---FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-------FPPG 84 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~~---~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-------i~~~ 84 (191)
++.+..++.|...|++|-+-|. .++| +.+|+...++...+.+...|-++. |-+.++..|+- +.+.
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~---TDsGL~~LlPyFv~fIae~vs~ni~~~nL~l--L~~lm~m~rSLl~Np~i~lepY 285 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLE---TDSGLQQLLPYFVTFIAEGVSVNIVQNNLEL--LIYLMRMVRSLLDNPNIFLEPY 285 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhc---cCccHHHHHHHHHHHHhhheeeccccccHHH--HHHHHHHHHHHhcCCccchhhH
Confidence 4444445578888888755554 5555 677777777643333322333332 33333444432 2232
Q ss_pred HHHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHHHhhCCCCCCchH----HHHHHHHhhcC--Cccccchhhh
Q psy9906 85 VSEFIKQECLSAIGD----------PSPLIRATVGILITTIASKGDLKSWPEL----LPTLNDMLDSQ--DYNVCELLPV 148 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~----------~~~~ir~~~~~~i~~Ia~~e~~~~Wpel----l~~L~~~l~~~--~~~~~~~~l~ 148 (191)
.. .+--.++.++.. .+..+|.-.+..++.|++.- .+.+..| +.++...+.+. .+...+|++.
T Consensus 286 lh-~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f-~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 286 LH-QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNF-STLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred HH-HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 22 223344444431 24679999999999998765 3333344 44444444433 4566788888
Q ss_pred HHHHHhh
Q psy9906 149 LLPILKE 155 (191)
Q Consensus 149 ~L~~l~e 155 (191)
.|..+..
T Consensus 364 gL~~lg~ 370 (576)
T KOG2549|consen 364 GLSELGH 370 (576)
T ss_pred HHHHhhh
Confidence 8866653
No 167
>KOG2149|consensus
Probab=37.40 E-value=2.9e+02 Score=24.27 Aligned_cols=112 Identities=17% Similarity=0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC-
Q psy9906 45 NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS- 123 (191)
Q Consensus 45 ~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~- 123 (191)
.-.|-+++...+..+..+|+-|.--||..+..+-..+ ...+..+=+.+.+.+.+.+..+|..+-+.+-.++-..-++.
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 3456677766678899999999999999988742211 22223344445555566788888877777777665553333
Q ss_pred ---CchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 124 ---WPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 124 ---Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
-+=+++.+...+++-.+..++-++..|..+-+.+
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1236666677777767777888888887777765
No 168
>KOG0915|consensus
Probab=37.19 E-value=5.1e+02 Score=27.13 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLN 132 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~ 132 (191)
++...+.|-.++...--.+.+.=..+.|..=..+| .++.++.+-+..+|++++.+.+.+++...|+.-..++..+.
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~-al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLR-ALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccCcchhHHHH-HHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34566677777765555555444444454444444 45555555666777777777777776665555444554444
No 169
>KOG1967|consensus
Probab=37.09 E-value=2.1e+02 Score=28.06 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=60.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHhhcCCc---cccchhhhHHHHHhhhcCCCc
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSWPELLPTLNDMLDSQDY---NVCELLPVLLPILKETLFHHD 161 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~~~l~~~~~---~~~~~~l~~L~~l~e~l~~~~ 161 (191)
.+-.-|+++|.-++..+|...-.++......-. +..-.+++|.++.+-.+.|. ..++.|+.||..+.+-+....
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 455577777777887777766677666655442 34556789999988777663 358999999988888443322
Q ss_pred -HHHHHHHHHHHHHHhhhhh
Q psy9906 162 -WEIKESGILALGAIAEVNK 180 (191)
Q Consensus 162 -~~~r~~~i~~~~ai~~~~~ 180 (191)
...|..-++|+-.+.+++.
T Consensus 989 l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred cccccHHHHHHhhhccCcHH
Confidence 3344444555555555443
No 170
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=36.84 E-value=32 Score=17.70 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9906 162 WEIKESGILALGAIAE 177 (191)
Q Consensus 162 ~~~r~~~i~~~~ai~~ 177 (191)
|.+|..++.++|.|-+
T Consensus 1 ~~vR~~aa~aLg~~~~ 16 (30)
T smart00567 1 PLVRHEAAFALGQLGD 16 (30)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6789999999998843
No 171
>KOG1410|consensus
Probab=35.63 E-value=2.4e+02 Score=27.02 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=53.1
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-------FIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP 125 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-------~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp 125 (191)
++.+..|-..|+..|-+.+...+..+.-+.+. .--.+++..+.+.+..+...+..++..|.-.|-.++|.
T Consensus 918 t~lDt~v~ssccsslD~i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWS 994 (1082)
T KOG1410|consen 918 TSLDTIVSSSCCSSLDTIVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWS 994 (1082)
T ss_pred chhhHHHHhHHHHHHHHHHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhccccc
Confidence 34577888889998888888776654332222 23346888899988899999999999999889889994
No 172
>KOG1248|consensus
Probab=35.25 E-value=4.9e+02 Score=26.30 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhh--c---CCC------hHHHHHHHHhhhCCCChhHHhHHH-HHHHHhhhhhh
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLN--T---HPD------FNNYLIFVLTKLTSEDEPTRSLSG-LILKNNVRARF 78 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~--~---~~~------~~~~L~~il~~~~~~~~~vRq~A~-i~LKn~i~~~W 78 (191)
..+.+++-.+-.-|...|+.|.+-|..+. . .+| ...-.+.++.. .-.....|..|. |.-=+.+-+..
T Consensus 738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa-gl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 738 KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA-GLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh-hhcccHHHHHHHHHHHHHHHHHHH
Confidence 34555555553347889999999988766 1 122 22222333322 222445666665 43333333333
Q ss_pred -cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccchhhhHHHHH
Q psy9906 79 -YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCELLPVLLPIL 153 (191)
Q Consensus 79 -~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l 153 (191)
+-++.+.-..+=+.+-..|.+..+.|++.+...+...+...+. ..=|+++|.++.++.....+.+-.+..+|..+
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4477788888888888888999999999888888877776632 33478999999988776665555566666666
Q ss_pred hh
Q psy9906 154 KE 155 (191)
Q Consensus 154 ~e 155 (191)
++
T Consensus 897 ir 898 (1176)
T KOG1248|consen 897 IR 898 (1176)
T ss_pred HH
Confidence 55
No 173
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.19 E-value=29 Score=28.62 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHHH-HHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCc
Q psy9906 106 ATVGILIT-TIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHD 161 (191)
Q Consensus 106 ~~~~~~i~-~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~ 161 (191)
..+..++. .+-+.+..+.||=++|.++.++.+.++..+.-|+.+|..+.+.+....
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 45566665 333333457899999999999999888889999999988877654443
No 174
>KOG2160|consensus
Probab=34.84 E-value=3e+02 Score=23.70 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=62.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhc-CC---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNT-HP---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~-~~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
-++...-+++.+.|..|-..+-.+.. +| +|...|+.++. ++.+..+|.-|..-+-..|+++= +.
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~----~g 201 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS--SDDPNTVRTKALFAISSLIRNNK----PG 201 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc----HH
Confidence 34444557789999999998886543 33 56777888885 45566777666655555555432 12
Q ss_pred HHHHHH----HHHHHhhCC--CCHHHHHHHHHHHHHHHhhC
Q psy9906 85 VSEFIK----QECLSAIGD--PSPLIRATVGILITTIASKG 119 (191)
Q Consensus 85 ~k~~ik----~~ll~~l~~--~~~~ir~~~~~~i~~Ia~~e 119 (191)
...+.| ..|...|.+ .+..+++++...++.+...+
T Consensus 202 ~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 202 QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 222222 245556666 46777788888888888777
No 175
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=34.47 E-value=76 Score=22.61 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----HhhCCCCCCchHHHHHHHHhhcC
Q psy9906 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTI----ASKGDLKSWPELLPTLNDMLDSQ 138 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I----a~~e~~~~Wpell~~L~~~l~~~ 138 (191)
...-..+++.|.+.+.++......++..||..+ ...+.|..|.+++..|...+.+.
T Consensus 21 ~~A~~qM~~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~~~~ 80 (120)
T PF08785_consen 21 QKAIQQMKNVIEQLVSDSGDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKLLSK 80 (120)
T ss_dssp CHHHHHHHHHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 344456777777777776333345567777665 34457999999999999888765
No 176
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.06 E-value=3e+02 Score=23.46 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=66.2
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh----h---cCCChhHHHHH
Q psy9906 20 SQSPDNLIQRAVQHKLEQLNTHPD---FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR----F---YEFPPGVSEFI 89 (191)
Q Consensus 20 ~~s~d~~~r~~AE~~L~~~~~~~~---~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~----W---~~i~~~~k~~i 89 (191)
..+.+...|+.|-+ .++.+|| ..+|++..+.. ....++.+ -.-.|...++.- + -.+.+--...+
T Consensus 187 ~~~~~~~~r~~aL~---sL~tD~gl~~LlPyf~~fI~~--~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Li 260 (343)
T cd08050 187 LVGSNEEKRREALQ---SLRTDPGLQQLLPYFVRFIAE--GVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPYLHQLI 260 (343)
T ss_pred HhCCCHHHHHHHHH---HhccCCCchhhhhHHHHHHHH--HHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHhHHHHH
Confidence 33456666766544 4555555 56666666642 12222221 111222222221 1 12444444333
Q ss_pred HHHHHHhhCC----------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh----hcC--CccccchhhhHHHHH
Q psy9906 90 KQECLSAIGD----------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDML----DSQ--DYNVCELLPVLLPIL 153 (191)
Q Consensus 90 k~~ll~~l~~----------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l----~~~--~~~~~~~~l~~L~~l 153 (191)
..++.++.. .+-.+|...|.+++.|++.- ....|++-|.+...+ .++ .....+||+..|..+
T Consensus 261 -p~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f-~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 261 -PSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF-STSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred -HHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 355555431 23599999999999999765 444677766666333 222 223367777777655
Q ss_pred h
Q psy9906 154 K 154 (191)
Q Consensus 154 ~ 154 (191)
.
T Consensus 339 G 339 (343)
T cd08050 339 G 339 (343)
T ss_pred C
Confidence 3
No 177
>KOG4653|consensus
Probab=33.96 E-value=4.6e+02 Score=25.67 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND 133 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~ 133 (191)
+...++|-.|...+++.++++. .-+-...+.|-.-.++.+.+.++.+--.+...++.++..+ | .+++|.+.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-~---e~il~dL~e 809 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-P---EDILPDLSE 809 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-c---hhhHHHHHH
Confidence 3455799999999999999773 2222333445567777888888877666666666666553 2 136777665
No 178
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=33.72 E-value=64 Score=23.27 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q psy9906 6 QEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT 40 (191)
Q Consensus 6 ~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~ 40 (191)
.+...+.+.++|+.++..|.++|.-++..+.++..
T Consensus 57 ~~~~q~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~ 91 (121)
T PRK10548 57 STVMQEQLRPMLRQILDNEAELKQLLQQRMDELSS 91 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888888888899989888888765
No 179
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=33.11 E-value=2.3e+02 Score=22.00 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=56.5
Q ss_pred ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh-hhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 43 DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA-RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 43 ~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~-~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
+|-.+|--.+.-..+.+.+.|.+|.--++..+.. .+..+-+-. ..+=..|-.+|.+.++.+....-.++..++....-
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4666666555434456778999999999999988 554432221 12222455677888888888888888888655421
Q ss_pred CCCchHHHHHHHHh
Q psy9906 122 KSWPELLPTLNDML 135 (191)
Q Consensus 122 ~~Wpell~~L~~~l 135 (191)
-=+.|+|.+-+++
T Consensus 114 -vG~aLvPyyrqLL 126 (183)
T PF10274_consen 114 -VGEALVPYYRQLL 126 (183)
T ss_pred -hhHHHHHHHHHHH
Confidence 1145555544443
No 180
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=33.01 E-value=1.9e+02 Score=20.86 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHH------HHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLI------FVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~------~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+++|..+ .|+.+..-|=.-|.+|-. .|+--..+- .|+.-+++.++.||.-|...+-..+..+|.
T Consensus 45 lk~L~~lL~~s--~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 45 LKKLIKLLDKS--DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHH-SH--HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHccC--CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 34455555332 267777777777777765 343222221 111113567999999999999999999984
No 181
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=32.86 E-value=3e+02 Score=27.73 Aligned_cols=87 Identities=18% Similarity=0.125 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-hhCC-CCCCchHHHHHHHHhhcCCcc
Q psy9906 64 SLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA-SKGD-LKSWPELLPTLNDMLDSQDYN 141 (191)
Q Consensus 64 q~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia-~~e~-~~~Wpell~~L~~~l~~~~~~ 141 (191)
.+|---|+|.+..++. -+. ..+.-...+++.+...+=.+++++. +.++ +-.-++++.-.+-.+.+++.+
T Consensus 488 ~lgr~AL~nLL~~N~d--------Ll~-~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~e 558 (1120)
T PF14228_consen 488 SLGRRALKNLLEHNPD--------LLD-WVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSE 558 (1120)
T ss_pred HHHHHHHHHHHHhhHH--------HHH-HHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHH
Confidence 3344567777776642 233 3344334456677666666777775 5554 334447888877788888889
Q ss_pred ccchhhhHHHHHhhhcCC
Q psy9906 142 VCELLPVLLPILKETLFH 159 (191)
Q Consensus 142 ~~~~~l~~L~~l~e~l~~ 159 (191)
.+..|+.+|+++++.+|.
T Consensus 559 IR~~A~qLL~~Le~R~~~ 576 (1120)
T PF14228_consen 559 IRSKAMQLLRALEERFFS 576 (1120)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999876553
No 182
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=32.07 E-value=3.1e+02 Score=23.05 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=76.3
Q ss_pred hHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhC-------CCCCCchHHHH
Q psy9906 61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGD---PSPLIRATVGILITTIASKG-------DLKSWPELLPT 130 (191)
Q Consensus 61 ~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~---~~~~ir~~~~~~i~~Ia~~e-------~~~~Wpell~~ 130 (191)
.+=.+.+.+.++ +.......-+..-+.+=+..+..+.+ .-|..|..+-..+..|..+. +++....++..
T Consensus 91 evL~l~~~ii~k-l~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 91 EVLSLMATIINK-LGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp HHHHHHHHHHHH-HGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 333333334433 33333333344444555555555554 35889988888888888874 34666777777
Q ss_pred HHHHhhcCCccccchhhhHHHHHhhhcCCCcHH---------HHHHHHHHHHHHhhhhhhhchhhccc
Q psy9906 131 LNDMLDSQDYNVCELLPVLLPILKETLFHHDWE---------IKESGILALGAIAEVNKSIGLKLLCS 189 (191)
Q Consensus 131 L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~---------~r~~~i~~~~ai~~~~~~~~~~~~~~ 189 (191)
+.-.+++++.+..+.++.++..+-+.+...+.. +..---..++.+.|..++.|++.-|.
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~ 237 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQ 237 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 777788888888888888886665544331111 11111225677888888888887653
No 183
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=31.39 E-value=3.1e+02 Score=22.93 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 102 PLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 102 ~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
+.+...+-.+++-++..-++ ..|.+.+|.|..++.++|.+.+-+|..++-.+.|..
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 46777777777777766533 457888999999999999999999999998888743
No 184
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=31.18 E-value=44 Score=25.82 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 24 DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
|..+|+=|-..|+++.. .+...||.++.+...-.+....-++-.++++...
T Consensus 90 ~~~VR~yAv~~L~~~~d-~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~ 140 (184)
T PF00613_consen 90 DPFVRQYAVRRLESLSD-EELLFYLPQLVQALRYEPYHDSPLARFLLRRALK 140 (184)
T ss_dssp -HHHHHHHHHHHCTS-H-HHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHheeccccccHHHHHHHHHHHh
Confidence 35555555555544332 2344444444433222222233344444444443
No 185
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=31.12 E-value=2.1e+02 Score=22.95 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHhhcC
Q psy9906 81 FPPGVSEFIKQECLSAIGD-PSPLIRATVGILITTIASKG-DLKSWPELLPTLNDMLDSQ 138 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e-~~~~Wpell~~L~~~l~~~ 138 (191)
++...-..|=..|+.-+.. +...+...+..|+..|-..+ ....|-||+|.++..+...
T Consensus 21 l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~~~~~ldLlP~~Ls~L~~~ 80 (223)
T PF14675_consen 21 LSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNKNGKWLDLLPKCLSALSAS 80 (223)
T ss_dssp --HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S-STTTTHHHHHHHHHHT-
T ss_pred cCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHhcC
Confidence 4444334444444444444 44555555556665554333 4578999999999999765
No 186
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=31.00 E-value=1.3e+02 Score=22.41 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKN 72 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn 72 (191)
+..+|...--.|.+..+++.+.|..... ++... .+.++. ..-.+..||++|.-.|++
T Consensus 41 lp~~L~sv~w~~~~~~~e~~~lL~~W~~-~~~~~-aL~LL~-~~~~~~~vr~yAv~~L~~ 97 (152)
T cd00864 41 LPKLLKSVNWNDDEEVSELYQLLKWWAP-LSPED-ALELLS-PKYPDPVVRQYAVRVLES 97 (152)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHhcCCC-CCHHH-HHHHcC-CcCCCHHHHHHHHHHHHh
Confidence 4444444444577777777777776533 34333 344443 233467888888877776
No 187
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=30.86 E-value=3.5e+02 Score=23.36 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=83.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHH---------HhhhCCCChhHHhHHHHHHHHhhhhh--hcCCChhHHH
Q psy9906 19 ESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFV---------LTKLTSEDEPTRSLSGLILKNNVRAR--FYEFPPGVSE 87 (191)
Q Consensus 19 ~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~i---------l~~~~~~~~~vRq~A~i~LKn~i~~~--W~~i~~~~k~ 87 (191)
-.++++.++|..|-..+..+-.++++...+... +. -.+....-|..|.-+.|.++..+ =..++ .
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~-~~~~~~~ER~QALkliR~~l~~~~~~~~~~----~ 107 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLD-RDNKNDVEREQALKLIRAFLEIKKGPKEIP----R 107 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhc-ccCCChHHHHHHHHHHHHHHHhcCCcccCC----H
Confidence 467778999999999998877777766665542 11 12235667888998998888762 11222 2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 88 FIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 88 ~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
.|-..++....+++...|+.+-+.+.+++-.++. -.+-+.+..|.+.+.++.....+..+.++
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 3333566666668899999999999999999843 22445566677666654333333333333
No 188
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=30.50 E-value=2.2e+02 Score=25.55 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHh--h----hC--CCChhHHhHHHHHHHHhhh----
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNT---HPDFNNYLIFVLT--K----LT--SEDEPTRSLSGLILKNNVR---- 75 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~~~~~~L~~il~--~----~~--~~~~~vRq~A~i~LKn~i~---- 75 (191)
+.+.-++-++-+++.++-..||..|+.... ++++...|..++. . .. -.++.+|.--..+|-+.+.
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~ 316 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATS 316 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhC
Confidence 345556666777888999999999998774 4667888888875 1 00 0122333222222222221
Q ss_pred -------------------------------hhhc--CCChhHHHHHHHHHHHhhC------------CCCHHHHHHHHH
Q psy9906 76 -------------------------------ARFY--EFPPGVSEFIKQECLSAIG------------DPSPLIRATVGI 110 (191)
Q Consensus 76 -------------------------------~~W~--~i~~~~k~~ik~~ll~~l~------------~~~~~ir~~~~~ 110 (191)
..|. .+++..-..++..|+..+- ..+...|...-+
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 0121 1455555677777776531 135788999999
Q ss_pred HHHHHHhhCC---CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcC
Q psy9906 111 LITTIASKGD---LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF 158 (191)
Q Consensus 111 ~i~~Ia~~e~---~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~ 158 (191)
+++.|++..+ .++| +++..|++.+..++++.+-..-.+|.-+...+.
T Consensus 397 ~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 397 TLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 9999999984 3554 799999999976665555444455555555443
No 189
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.96 E-value=1.7e+02 Score=26.58 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 10 LIQILQLLKESQS-PDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 10 ~~~l~~lL~~~~s-~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
...+.+.|....+ .|...+.-+=..|.++.. |.....|..++......+..+|..|.--|++... .....
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--------~~~~~ 558 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--------HCPEK 558 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--------T-HHH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--------cCcHH
Confidence 3445555654433 356666667777777654 7888888888763225678899999988886632 23357
Q ss_pred HHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhc
Q psy9906 89 IKQECLSAIGD--PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDS 137 (191)
Q Consensus 89 ik~~ll~~l~~--~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~ 137 (191)
+++.++..+.+ .+..+|-++. ..+.+..++ +..+..+.+.+..
T Consensus 559 v~~~l~~I~~n~~e~~EvRiaA~---~~lm~~~P~---~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEVRIAAY---LILMRCNPS---PSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHH---HHHHHT------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCChhHHHHHH---HHHHhcCCC---HHHHHHHHHHHhh
Confidence 88899998876 4678885443 333434322 2466667766654
No 190
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.77 E-value=3.5e+02 Score=28.02 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhcC-------------------CChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 25 NLIQRAVQHKLEQLNTH-------------------PDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 25 ~~~r~~AE~~L~~~~~~-------------------~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
...|+.+|.-|+.--.. .+|...++.+... ..+.++.+|.+|+...+..+... +.-
T Consensus 394 ~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~ 469 (1426)
T PF14631_consen 394 EDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSY 469 (1426)
T ss_dssp HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HH
T ss_pred ccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cch
Confidence 35678888887642211 2344444444322 24678899999999998888754 222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
.+..|=..|+..+.+....=...+-.++..++...
T Consensus 470 ~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 470 CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN 504 (1426)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc
Confidence 34445556666555544333356667777777643
No 191
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=29.72 E-value=1.7e+02 Score=25.46 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=62.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHhhcCCc--cccchhhhHHHHHhhhc-CCCcHH
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGD-----LKSWPELLPTLNDMLDSQDY--NVCELLPVLLPILKETL-FHHDWE 163 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----~~~Wpell~~L~~~l~~~~~--~~~~~~l~~L~~l~e~l-~~~~~~ 163 (191)
.+++.|.+++.-+|.+...+++.||..-. --+ -..+..++.++.++.. .....+.-+|+-+|..- ..++|.
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~ 239 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS 239 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence 45667778889999999999999987541 111 2456667777776533 55677777888888743 346777
Q ss_pred HHHHHHHHHHHHhhhhhhhchh
Q psy9906 164 IKESGILALGAIAEVNKSIGLK 185 (191)
Q Consensus 164 ~r~~~i~~~~ai~~~~~~~~~~ 185 (191)
.-..++..+..++-..++-+|.
T Consensus 240 ~isqalpiL~KLiys~D~evlv 261 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHH
Confidence 7777777666666555554443
No 192
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.08 E-value=1.3e+02 Score=24.75 Aligned_cols=49 Identities=10% Similarity=0.000 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 108 VGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 108 ~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
+..++..|...-+|+.+.+.+..+.+++.++-...+...|.+|..+-..
T Consensus 170 l~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 170 LSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcc
Confidence 3445555555456888888888888888877666777777777666653
No 193
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=28.98 E-value=1.7e+02 Score=21.99 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 108 VGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 108 ~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
+..+|..+.+...+.-.-|+++.+.+...... -..+....+|+.+.+-+.+..-.+...|+..+-+|+..
T Consensus 30 ~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~-~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 30 IKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEK-WTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhcCcCc-ccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 44566666666545555666666664444333 34577777888888877666556666666555555443
No 194
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.90 E-value=2.3e+02 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
.+| +.+-.|.+.+.+.. .++-.+++.|...+.+.+..+..-|+..+-+++...
T Consensus 21 ~Dw-~~~l~icD~i~~~~----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 21 PDW-SLILEICDLINSSP----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp --H-HHHHHHHHHHHTST----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred CCH-HHHHHHHHHHHcCC----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 355 34445666665541 344455555666666666666666666665555544
No 195
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=28.59 E-value=2.4e+02 Score=21.48 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLT 53 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~ 53 (191)
++..|..++.-++++|.+.|.-++.-.+..+.-..+...+..-+.
T Consensus 88 s~~DLsdii~i~f~~deel~~~~e~i~~~v~~Gn~Sl~~lsr~l~ 132 (160)
T PF09824_consen 88 SMEDLSDIIYIAFMSDEELRDYVEKIEKEVEAGNTSLSDLSRKLG 132 (160)
T ss_pred eHHHHHHHHheeecCHHHHHHHHHHHHHHHHcCCCcHHHHHHHhC
Confidence 467899999999999999999999888888874447777777663
No 196
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.29 E-value=68 Score=23.21 Aligned_cols=34 Identities=26% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
+.-.++...|...+++.+++.+.=+|.+|.++|+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 4455777777777777666666667777777775
No 197
>PF06086 Pox_A30L_A26L: Orthopoxvirus A26L/A30L protein; InterPro: IPR009285 This family consists of several Orthopoxvirus A26L and A30L proteins. The Vaccinia A30L gene is regulated by a late promoter and encodes a protein of approximately 9 kDa. It is thought that the A30L protein is needed for vaccinia virus morphogenesis, specifically the association of the dense viroplasm with viral membranes [].
Probab=27.92 E-value=70 Score=25.61 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=31.8
Q ss_pred hHHhHHHHHHHHhhhhhhcC-------CChhHHHHHHHHHHHhhCC
Q psy9906 61 PTRSLSGLILKNNVRARFYE-------FPPGVSEFIKQECLSAIGD 99 (191)
Q Consensus 61 ~vRq~A~i~LKn~i~~~W~~-------i~~~~k~~ik~~ll~~l~~ 99 (191)
.++..+...||+.|...|.. |+-+.|..||+-+=+-+..
T Consensus 17 d~~~~~I~~F~slV~~~W~~~L~~~sCI~R~~RKiIRnViR~ym~s 62 (220)
T PF06086_consen 17 DVNVASIREFKSLVSETWNKPLNENSCIPREDRKIIRNVIREYMKS 62 (220)
T ss_pred cCccchHHHHHHHHHHhcCCccccccccCHHHHHHHHHHHHHHHHh
Confidence 46777788999999999986 7889999999766666654
No 198
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.57 E-value=4.4e+02 Score=23.41 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906 6 QEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV 85 (191)
Q Consensus 6 ~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~ 85 (191)
.++.++-++.++...+..| ...++.+.+.....|+....++.++. ..+..+...|+-.|-..+...-...+...
T Consensus 67 ~~d~vqyvL~Li~dll~~~---~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~~~~~~~~~ 140 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQED---DTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFGLAKMEGSD 140 (429)
T ss_pred cHHHHHHHHHHHHHHHHhc---hHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcCccccchhH
Confidence 3444555555666555543 23344444433334553333444553 45777888888888777763323344455
Q ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhC-CCC-CC-chHHHHHHHHhhc
Q psy9906 86 SEFIKQECLSAIGDP-SPLIRATVGILITTIASKG-DLK-SW-PELLPTLNDMLDS 137 (191)
Q Consensus 86 k~~ik~~ll~~l~~~-~~~ir~~~~~~i~~Ia~~e-~~~-~W-pell~~L~~~l~~ 137 (191)
...+-+.+...+..+ +......+..|+..+.+.+ +.. -| .+.++.|...++.
T Consensus 141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh
Confidence 556666777777653 3444555668898888887 321 23 2367777777764
No 199
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=27.39 E-value=3.7e+02 Score=22.44 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCc------cccchhhhHHHHHhhhcCCCcHHHHHHHHH
Q psy9906 127 LLPTLNDMLDSQDY------NVCELLPVLLPILKETLFHHDWEIKESGIL 170 (191)
Q Consensus 127 ll~~L~~~l~~~~~------~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~ 170 (191)
....+..++.++|| ...+.|..+++.+.+.+-+..|+.+.+...
T Consensus 57 ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~~~~~~~dl~~Avk~ 106 (285)
T COG1578 57 IHREVYKILGNEDPYKEYKRRANEIALKVLPKVRENIEDTPEDLKTAVKL 106 (285)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 44445566666665 346899999999999777788888887654
No 200
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=27.35 E-value=52 Score=16.73 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q psy9906 164 IKESGILALGAIAE 177 (191)
Q Consensus 164 ~r~~~i~~~~ai~~ 177 (191)
+|.+++.++|.|-+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 58888899998876
No 201
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=27.30 E-value=5.4e+02 Score=24.32 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh-
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP- 83 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~- 83 (191)
.++...+++..++..-...||-.- .|..+..+.+ |...+-.|+.--++....-|-+. +|+.++...-.+.++
T Consensus 9 ~~~s~~~if~k~Q~s~aGhrk~~a-~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~--fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 9 SLESMQLIFNKIQQSSAGHRKSLA-ELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILS--FLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHH--HHHHHHHhcCCCChhh
Confidence 456667777777666667777643 3444444344 44444455532234444455433 456666633333333
Q ss_pred -hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 84 -GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL---KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 84 -~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
+--+.+-..++.++.+.+..+|.-..++++.+...-.+ .-...|+..|...+-...+..+.-|..+|.++.|
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 12223333666777778999999999999888766533 2345566666666655566667778888887776
No 202
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=26.76 E-value=3e+02 Score=23.02 Aligned_cols=79 Identities=9% Similarity=-0.128 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC
Q psy9906 44 FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122 (191)
Q Consensus 44 ~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~ 122 (191)
|..-.++++.......+.+=...--.++.++..-|..-+.+.+..|++.+-......+..+-..++..+..+.+..+|.
T Consensus 37 fL~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~~L~~l~~~~d~~L~~~L~~~l~~ll~~~yP~ 115 (284)
T PF04793_consen 37 FLLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKEILDHLEEAGDSNLERELAKGLPKLLGCKYPH 115 (284)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhhCCC
Confidence 4444445554333444444444555566666666665667778888744443445677788888999999999988663
No 203
>KOG1837|consensus
Probab=26.28 E-value=4.5e+02 Score=27.44 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=56.0
Q ss_pred HHhHHHHHHHHhhhh----hhcCCChhHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHH
Q psy9906 62 TRSLSGLILKNNVRA----RFYEFPPGVSEFIKQECLSAIGD------PSPLIRATVGILITTIASKGDLKSWPELLPTL 131 (191)
Q Consensus 62 vRq~A~i~LKn~i~~----~W~~i~~~~k~~ik~~ll~~l~~------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L 131 (191)
-+++..-.+|+.+.+ +| .+-+.++.+-..++..+.+ ....+-..++.+++.++..+..+ |+.+...+
T Consensus 1470 ~~~Lvl~cl~~~~~~Dt~~~f--~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d-~~pl~~k~ 1546 (1621)
T KOG1837|consen 1470 LGTLVLNCLKDLFLFDTIESF--VTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDD-LKPLNQKI 1546 (1621)
T ss_pred HHHHHHHHHHHHHhhhhhHHH--HhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhh-hHHHHHHH
Confidence 344556666666643 22 1223333333333333332 13345555666666666666434 99999999
Q ss_pred HHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 132 NDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 132 ~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
+....+++.+.+..++.....+.+.+
T Consensus 1547 l~~trss~~~~r~~ai~~~~~l~~~l 1572 (1621)
T KOG1837|consen 1547 LKKTRSSSRKARYLAIIQVKLLYTKL 1572 (1621)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHh
Confidence 99998888888888888877666654
No 204
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=26.19 E-value=1.4e+02 Score=27.13 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHhhhCCCChhHHhHHHHHH
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD-FNNYLIFVLTKLTSEDEPTRSLSGLIL 70 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~-~~~~L~~il~~~~~~~~~vRq~A~i~L 70 (191)
+..+...+.+....+..+|..|-..|..+.. .|+ ....|+.|+. +.+.+.++|.+|...|
T Consensus 523 i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~-n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 523 IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM-NTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH--TTS-HHHHHHHHHHH
T ss_pred hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc-CCCCChhHHHHHHHHH
Confidence 3344444444434568899999999987654 343 5778889986 5778999999998665
No 205
>KOG2062|consensus
Probab=26.17 E-value=6.1e+02 Score=24.56 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=52.7
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHH-HhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh--------hhcC
Q psy9906 11 IQILQLLKESQ-SPDNLIQRAVQHKLE-QLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA--------RFYE 80 (191)
Q Consensus 11 ~~l~~lL~~~~-s~d~~~r~~AE~~L~-~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~--------~W~~ 80 (191)
..+.++|+-.. ++|-.+|+.|--.|- -+.++|+-+.....++. .+.++.||--|++.|--.-.- --..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLs--es~N~HVRyGaA~ALGIaCAGtG~~eAi~lLep 631 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLS--ESYNPHVRYGAAMALGIACAGTGLKEAINLLEP 631 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHh--hhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhh
Confidence 44566777654 457789999888877 34456887777777775 467788888888877433320 1122
Q ss_pred CChhHHHHHHHHHHH
Q psy9906 81 FPPGVSEFIKQECLS 95 (191)
Q Consensus 81 i~~~~k~~ik~~ll~ 95 (191)
+..+.-.++|+.-+-
T Consensus 632 l~~D~~~fVRQgAlI 646 (929)
T KOG2062|consen 632 LTSDPVDFVRQGALI 646 (929)
T ss_pred hhcChHHHHHHHHHH
Confidence 444555677775444
No 206
>KOG1848|consensus
Probab=25.66 E-value=4.4e+02 Score=27.32 Aligned_cols=109 Identities=16% Similarity=0.049 Sum_probs=68.9
Q ss_pred hHHHHHHHHhhhC-CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH-HHHHHhhCC---------CCHHHH----HHH
Q psy9906 44 FNNYLIFVLTKLT-SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK-QECLSAIGD---------PSPLIR----ATV 108 (191)
Q Consensus 44 ~~~~L~~il~~~~-~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik-~~ll~~l~~---------~~~~ir----~~~ 108 (191)
.|.+|+..+.... +.-..||-.|+..|=+.+..|=..++...=.-+- +.++..|.. +...+. ...
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence 5666666665432 2356899999998888888765555543333222 233334431 123332 235
Q ss_pred HHHHHHHHhhC------------CCCCCchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906 109 GILITTIASKG------------DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPI 152 (191)
Q Consensus 109 ~~~i~~Ia~~e------------~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~ 152 (191)
+.+|+.|++.- +.+.|.+++..+..+..+.+++..-++..+++.
T Consensus 1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHH
Confidence 66677777653 336799999999999998888887777777643
No 207
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.47 E-value=5.8e+02 Score=24.07 Aligned_cols=54 Identities=17% Similarity=-0.015 Sum_probs=30.2
Q ss_pred CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 120 DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---TLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 120 ~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
||..|...+.+|.+.+.+ +|++..-+++.| +++..+.+-|+-|+..++--+|++
T Consensus 406 Fp~k~~s~l~FL~~~L~~------eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc 462 (898)
T COG5240 406 FPSKKLSYLDFLGSSLLQ------EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC 462 (898)
T ss_pred CcHHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc
Confidence 789999898888877654 344444444444 222334444444444455444443
No 208
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.41 E-value=5.8e+02 Score=24.10 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-----ChHHHH-HHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHP-----DFNNYL-IFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~-----~~~~~L-~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
..+..+|+++-++|..+|+..=+-|..+...- .....| ..+....-.-...||.-|...|-+ +..+..+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~-----~Qe~~~n 165 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY-----YQEMELN 165 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-----HHhccCC
Confidence 45778899999999999999999888776521 122222 223221113366789888877643 3355566
Q ss_pred HHHHHHHHHHHhhCC-CCHHHHHHH
Q psy9906 85 VSEFIKQECLSAIGD-PSPLIRATV 108 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~-~~~~ir~~~ 108 (191)
.+..+++-++..+.. |+..+|+.+
T Consensus 166 een~~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 166 EENRIVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 667788755555654 677888754
No 209
>KOG1949|consensus
Probab=25.16 E-value=6.3e+02 Score=24.41 Aligned_cols=120 Identities=23% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH----HHHHhhCCCCHHHHHHHHHHHHHHHhhCC----CCCCchH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ----ECLSAIGDPSPLIRATVGILITTIASKGD----LKSWPEL 127 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~----~~~Wpel 127 (191)
+-.+..||.-|+.+|-+.....=.+...+++..+-+ .+...|.++-+.||+.+..-+..+...-| |.--.++
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~l 263 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDL 263 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 345778999999999888876544454555554433 34445667889999887777777766553 3333455
Q ss_pred HHHHHHHhhcCC-ccccchhhhHH-----------------HHHhhhcCCCcHHHHHHHHHHHHHH
Q psy9906 128 LPTLNDMLDSQD-YNVCELLPVLL-----------------PILKETLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 128 l~~L~~~l~~~~-~~~~~~~l~~L-----------------~~l~e~l~~~~~~~r~~~i~~~~ai 175 (191)
+..+++-+.... ...+-+....| +-+.-.+.+..-.+|.+.+..+.-|
T Consensus 264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 555555444321 12222222222 2222234456677888887765544
No 210
>KOG4535|consensus
Probab=25.03 E-value=2.6e+02 Score=25.62 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=32.1
Q ss_pred chHHHHHHHHhhcCCccccchhhh--HHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 125 PELLPTLNDMLDSQDYNVCELLPV--LLPILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 125 pell~~L~~~l~~~~~~~~~~~l~--~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
...+.-|-.+++..-.+..+.++. +-..++..+.+.|..+|.+++..+|+|+.-
T Consensus 125 tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 125 TQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 334444444454443333333332 336666677778888888888888887754
No 211
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.66 E-value=1.7e+02 Score=20.60 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHH
Q psy9906 16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYL 48 (191)
Q Consensus 16 lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L 48 (191)
++.+..+|++++...|-+.|.++...+.+..++
T Consensus 13 Lv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~ 45 (115)
T PF14663_consen 13 LVTQLYDPSPEVVAAALEILEEACEDKEYLEYL 45 (115)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHH
Confidence 456777899999999999999988866444443
No 212
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.45 E-value=2.8e+02 Score=20.39 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhc
Q psy9906 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIG 183 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~ 183 (191)
.+| ++.-.+.+.+.+.. .++-.+++.|...+.+.+..+..-|+..+-+++..+.+..
T Consensus 16 ~dw-~~il~icD~I~~~~----~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 16 ENW-GLILDVCDKVKSDE----NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred cCH-HHHHHHHHHHhcCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 456 45556666666542 3445556666666666666666667666666666555433
No 213
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=23.81 E-value=2.9e+02 Score=21.31 Aligned_cols=13 Identities=8% Similarity=0.002 Sum_probs=6.3
Q ss_pred hhHHhHHHHHHHH
Q psy9906 60 EPTRSLSGLILKN 72 (191)
Q Consensus 60 ~~vRq~A~i~LKn 72 (191)
+.||++|.=.|+.
T Consensus 85 ~~Vr~yAvr~L~~ 97 (175)
T cd00871 85 PLVLQYAVRVLES 97 (175)
T ss_pred HHHHHHHHHHHHh
Confidence 4455555544444
No 214
>KOG2259|consensus
Probab=23.63 E-value=1.7e+02 Score=27.67 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=28.4
Q ss_pred hhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhc
Q psy9906 147 PVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIG 183 (191)
Q Consensus 147 l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~~~ 183 (191)
=.+|+.+|+.+-+.+|.+|..|.+++|.+-.-.+.+.
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i 316 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII 316 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence 3467888888888899999999999998665544443
No 215
>KOG1078|consensus
Probab=22.66 E-value=4.1e+02 Score=25.68 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhh-CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCC
Q psy9906 22 SPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTKL-TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGD 99 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~~-~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~ 99 (191)
||....|=.|+..|++... .|.....+--=+... +..+-.+-.+|-..| ...-.+.....+++.+-..+.+
T Consensus 293 sp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtL-------LKTG~e~sv~rLm~qI~~fv~d 365 (865)
T KOG1078|consen 293 SPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTL-------LKTGTESSVDRLMKQISSFVSD 365 (865)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHH-------HHhcchhHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---hcCCCcHHHHHHHHHHHHHHh
Q psy9906 100 PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---TLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 100 ~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---~l~~~~~~~r~~~i~~~~ai~ 176 (191)
-+...+....+++..+...- |..|..++++|.+++.+ +|++.--+.+.+ ++.....+.|+.++.-++--+
T Consensus 366 isDeFKivvvdai~sLc~~f-p~k~~~~m~FL~~~Lr~------eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI 438 (865)
T KOG1078|consen 366 ISDEFKIVVVDAIRSLCLKF-PRKHTVMMNFLSNMLRE------EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI 438 (865)
T ss_pred ccccceEEeHHHHHHHHhhc-cHHHHHHHHHHHHHHHh------ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Q ss_pred hhhh
Q psy9906 177 EVNK 180 (191)
Q Consensus 177 ~~~~ 180 (191)
|+++
T Consensus 439 EDce 442 (865)
T KOG1078|consen 439 EDCE 442 (865)
T ss_pred Hhcc
No 216
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.62 E-value=3e+02 Score=19.79 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
.+| ++.-.+.+.+.++. .++-.+++.|...+.+.+..+..-|+..+.+++..+
T Consensus 16 ~dw-~~~l~icD~i~~~~----~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc 68 (133)
T smart00288 16 EDW-ELILEICDLINSTP----DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC 68 (133)
T ss_pred cCH-HHHHHHHHHHhCCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 344 23334455554431 344444555555555555555555555555544443
No 217
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=22.51 E-value=4.4e+02 Score=21.64 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhH
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVL 149 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~ 149 (191)
..+.+-++.++.+.++.+|...-.|++..+-.|. +.=.+.++.+.+.++.++...+..++.+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555556678888888999888888888887774 2224566777777755544444444333
No 218
>KOG0905|consensus
Probab=22.14 E-value=3.2e+02 Score=27.91 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh-------hhhcC---CChhHHHHHHHH
Q psy9906 23 PDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR-------ARFYE---FPPGVSEFIKQE 92 (191)
Q Consensus 23 ~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~-------~~W~~---i~~~~k~~ik~~ 92 (191)
||+++|+-|-+.|..+.. .....+|-++.++.+-.-..---++-.+|++.+. .+|.- +++..-..==++
T Consensus 902 PDqeVR~~AVqwi~~ls~-DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~qfs~rYq~ 980 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLSN-DELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQFSLRYQN 980 (1639)
T ss_pred CcHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccceeehHHHH
Confidence 699999999999998876 3445555555443221111111233345555553 36742 222111101156
Q ss_pred HHHhhCC-CCH------HHHHHHHHHHHHHHhh
Q psy9906 93 CLSAIGD-PSP------LIRATVGILITTIASK 118 (191)
Q Consensus 93 ll~~l~~-~~~------~ir~~~~~~i~~Ia~~ 118 (191)
++.+|.. ..+ .-...+...++.|+..
T Consensus 981 ll~aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~ 1013 (1639)
T KOG0905|consen 981 LLAALLDCCGKNLREEFKKQHKLVNELGSIAED 1013 (1639)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666543 222 3335567777777654
No 219
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=22.06 E-value=1.6e+02 Score=17.90 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=16.9
Q ss_pred CChHHHHHHHHhhhC-CCChhHHhH---HHHHHHHh
Q psy9906 42 PDFNNYLIFVLTKLT-SEDEPTRSL---SGLILKNN 73 (191)
Q Consensus 42 ~~~~~~L~~il~~~~-~~~~~vRq~---A~i~LKn~ 73 (191)
.+|...|.+++.... .-++..|.. |.++|||+
T Consensus 14 ~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK 49 (52)
T PF08158_consen 14 KDFPQELIDLLRNHHTVLDPDLRMKLVKALILLRNK 49 (52)
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHcc
Confidence 356666777765321 225566642 44566653
No 220
>KOG1248|consensus
Probab=22.01 E-value=8.4e+02 Score=24.73 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC---hHHHHH----HHHhh-hCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 10 LIQILQLLKESQSP-DNLIQRAVQHKLEQLNTHPD---FNNYLI----FVLTK-LTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 10 ~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~~~~---~~~~L~----~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
+..+..+....-+. ++.+|+.|..-|..+...|. +..... ..+.. .++.+-..|.-+.-.||..++.+=..
T Consensus 652 vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e 731 (1176)
T KOG1248|consen 652 VSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE 731 (1176)
T ss_pred HHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH
Confidence 33333444444343 78999999999999887532 222222 22211 12334557777777788777654211
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia 116 (191)
..+-.-..|.+.||.. ...+..-|+..-+|+..|+
T Consensus 732 ~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 732 HCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHH
Confidence 1122223344444444 4556777777777777777
No 221
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=21.87 E-value=2e+02 Score=23.83 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=48.8
Q ss_pred hHHhHHH-HHHHHhhh----hhhcCCChhHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q psy9906 61 PTRSLSG-LILKNNVR----ARFYEFPPGVSEFIKQECLSA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDM 134 (191)
Q Consensus 61 ~vRq~A~-i~LKn~i~----~~W~~i~~~~k~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~ 134 (191)
.+|+.+. ++=+|+++ +.|++. ..+|+.++.- +----+++-.++...+....-.|.-=.||.+=..|.+.
T Consensus 201 ~mr~s~~~Vl~qNyikaA~trGlS~~-----~Ilr~hVlrNalPplIPq~g~qfs~mLTlamitEs~f~WPGiGRWLi~A 275 (321)
T COG4168 201 LMRQSTEEVLNQNYIKAAATRGLSRF-----TILRRHVLRNALPPLIPQLGLQFSTMLTLAMITESVFGWPGIGRWLINA 275 (321)
T ss_pred HHHHHHHHHHhhhHHHHHHhcchhhh-----HHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 3555555 55566666 356543 3445444442 22223445555555555555555445899999999999
Q ss_pred hhcCCccccchhh
Q psy9906 135 LDSQDYNVCELLP 147 (191)
Q Consensus 135 l~~~~~~~~~~~l 147 (191)
+.++|.+...++.
T Consensus 276 i~qqDy~sIsaGV 288 (321)
T COG4168 276 IRQQDYASISAGV 288 (321)
T ss_pred HHhhhhHHhhcce
Confidence 9999877644443
No 222
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.65 E-value=3.1e+02 Score=20.35 Aligned_cols=90 Identities=22% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhC-------CCCCCchH
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGD--PSPLIRATVGILITTIASKG-------DLKSWPEL 127 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~--~~~~ir~~~~~~i~~Ia~~e-------~~~~Wpel 127 (191)
..+.++|..|.+.|-+.+... .++.++.+-+.+-..+.+ .+..++ +..+++.+.... +-. +++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~--~~~~l~~lfp~~~dv~~~l~~~--eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLII--AFSALTALFPGPPDVGSELFLS--EGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHH--HHHHHHHHCTTTHHHHHHHCCT--TTH
T ss_pred CCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHH--HHHHHHHHhCCCHHHHHHHHhh--hhH
Confidence 457789999999998885221 133334444444444444 343333 233333332222 222 367
Q ss_pred HHHHHHHhh--cCCccccchhhhHHHHHh
Q psy9906 128 LPTLNDMLD--SQDYNVCELLPVLLPILK 154 (191)
Q Consensus 128 l~~L~~~l~--~~~~~~~~~~l~~L~~l~ 154 (191)
++.+..++. +.+......++.+|..-|
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 777777777 455555555555554433
No 223
>KOG4535|consensus
Probab=21.64 E-value=4.2e+02 Score=24.36 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCCC-----chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 84 GVSEFIKQECLSAIG-DPSPLIRATVGILITTIASKGDLKSW-----PELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~W-----pell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
..++.-| -++-+|. +..+.+-.++..|++.++...+-++- -+++..+..++.+.|++.+-.++.++..+..
T Consensus 103 si~~~~r-~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 103 SIRELHR-CLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 4444444 3334443 56677778999999999988754443 2456667778888899998899988877653
No 224
>KOG1517|consensus
Probab=21.39 E-value=2e+02 Score=28.81 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHH----HHhhCC-CCHHHHHHHHHHHHHHHhhCCCCCCch----
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQEC----LSAIGD-PSPLIRATVGILITTIASKGDLKSWPE---- 126 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~l----l~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~Wpe---- 126 (191)
+..++.-|-+|+..|--.+..+ . -.+++-+-.++ ++.|.+ +++.+|-=++.|++.+-..-...+|-.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf-~---lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~ 642 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNF-K---LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDN 642 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHccc-c---hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccccc
Confidence 3446688999998887777652 2 23333333333 444555 468999999999999876665677743
Q ss_pred HHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 127 LLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 127 ll~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
-...|...+..+.++.+-++...|..+-.
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 45566677776666777777777755443
No 225
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=20.70 E-value=1.1e+02 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.5
Q ss_pred hhhcCCChhHHHHHHHHHHH
Q psy9906 76 ARFYEFPPGVSEFIKQECLS 95 (191)
Q Consensus 76 ~~W~~i~~~~k~~ik~~ll~ 95 (191)
++|+..-++.|+.||.-+-+
T Consensus 49 kHWN~~~PeaK~~ik~li~~ 68 (82)
T PF10835_consen 49 KHWNGTYPEAKEEIKELIEE 68 (82)
T ss_pred HhhcccCchHHHHHHHHHHH
Confidence 69999999999999965543
No 226
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.11 E-value=1.8e+02 Score=18.96 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCCC---CCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh
Q psy9906 106 ATVGILITTIASKGDL---KSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE 155 (191)
Q Consensus 106 ~~~~~~i~~Ia~~e~~---~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e 155 (191)
++.-.+++.|+..++. -...++++.++++..+. ....+-.++++|..+..
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 4566778888887732 12457899999888754 55667778888877764
Done!