Query psy9906
Match_columns 191
No_of_seqs 146 out of 1287
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:42:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 8.2E-30 2.8E-34 235.0 19.3 179 1-179 3-205 (852)
2 1wa5_C Importin alpha RE-expor 99.9 1.4E-25 4.8E-30 209.7 14.5 147 8-157 2-154 (960)
3 1ibr_B P95, importin beta-1 su 99.9 4.4E-24 1.5E-28 182.1 12.3 166 12-179 2-205 (462)
4 2bpt_A Importin beta-1 subunit 99.9 5.4E-23 1.8E-27 187.8 15.1 167 10-177 3-210 (861)
5 2x19_B Importin-13; nuclear tr 99.9 1.1E-22 3.7E-27 189.3 15.2 150 9-160 22-180 (963)
6 3m1i_C Exportin-1; heat repeat 99.9 6.4E-23 2.2E-27 193.3 13.4 150 7-159 12-170 (1049)
7 3a6p_A Exportin-5; exportin-5, 99.9 3E-22 1E-26 191.4 15.1 152 7-160 7-167 (1204)
8 2x1g_F Cadmus; transport prote 99.9 1.5E-22 5.1E-27 188.9 6.8 146 9-157 5-159 (971)
9 1qgr_A Protein (importin beta 99.8 1.3E-20 4.5E-25 172.3 13.7 166 12-179 2-205 (876)
10 4hat_C Exportin-1; heat repeat 99.8 2.1E-20 7.1E-25 176.1 12.4 148 9-159 14-170 (1023)
11 3gjx_A Exportin-1; transport, 99.8 2.8E-20 9.6E-25 175.4 12.8 149 9-160 26-183 (1073)
12 3ibv_A Exportin-T; karyopherin 99.8 5.7E-18 1.9E-22 159.1 14.5 148 9-160 4-163 (980)
13 1u6g_C TIP120 protein, CAND1; 99.2 2.8E-10 9.5E-15 108.5 17.5 163 11-180 6-207 (1230)
14 1b3u_A Protein (protein phosph 98.7 2.9E-07 9.8E-12 80.2 14.5 99 81-179 157-273 (588)
15 3ltm_A Alpha-REP4; protein eng 98.5 3.3E-06 1.1E-10 64.6 14.2 146 7-177 18-172 (211)
16 3ltj_A Alpharep-4; protein eng 98.5 6.7E-06 2.3E-10 62.4 15.1 145 10-176 13-166 (201)
17 1b3u_A Protein (protein phosph 98.4 1E-06 3.6E-11 76.6 10.5 81 99-179 137-234 (588)
18 3ltj_A Alpharep-4; protein eng 98.2 2.5E-05 8.7E-10 59.1 12.6 143 9-176 46-197 (201)
19 3ltm_A Alpha-REP4; protein eng 98.2 2.6E-05 8.8E-10 59.5 12.2 147 9-180 51-206 (211)
20 1oyz_A Hypothetical protein YI 98.2 4.2E-05 1.4E-09 60.9 13.8 53 16-72 28-80 (280)
21 1oyz_A Hypothetical protein YI 98.2 0.00014 4.7E-09 57.8 16.5 147 18-176 61-220 (280)
22 2qk2_A LP04448P; mini spindles 98.2 0.00013 4.5E-09 57.0 16.0 158 16-179 20-207 (242)
23 1ibr_B P95, importin beta-1 su 98.1 0.00029 9.8E-09 59.2 17.4 170 11-180 171-398 (462)
24 4db6_A Armadillo repeat protei 98.1 0.00022 7.4E-09 54.0 14.8 156 10-176 14-208 (210)
25 2jdq_A Importin alpha-1 subuni 98.0 0.0003 1E-08 59.1 15.5 152 21-180 74-266 (450)
26 4fdd_A Transportin-1; heat rep 98.0 0.00015 5E-09 66.6 14.5 157 21-181 184-392 (852)
27 4hxt_A De novo protein OR329; 97.9 0.00019 6.3E-09 55.4 12.6 156 15-178 6-200 (252)
28 1u6g_C TIP120 protein, CAND1; 97.9 0.0001 3.4E-09 70.3 12.6 131 48-178 8-164 (1230)
29 2jdq_A Importin alpha-1 subuni 97.9 0.00075 2.6E-08 56.6 16.1 158 21-180 117-308 (450)
30 2vgl_B AP-2 complex subunit be 97.9 0.00017 6E-09 63.9 12.6 73 82-155 115-189 (591)
31 2vgl_B AP-2 complex subunit be 97.9 0.00043 1.5E-08 61.4 15.0 159 13-179 15-191 (591)
32 1xqr_A HSPBP1 protein; armadil 97.8 0.00043 1.5E-08 56.5 13.8 170 1-180 20-241 (296)
33 4hxt_A De novo protein OR329; 97.8 0.0011 3.9E-08 50.9 14.9 154 20-181 53-245 (252)
34 2qk1_A Protein STU2; STU2P, XM 97.8 0.006 2E-07 48.3 19.2 156 19-176 24-219 (249)
35 4b8j_A Importin subunit alpha- 97.7 0.00066 2.2E-08 58.7 14.0 161 13-180 76-276 (528)
36 4b8j_A Importin subunit alpha- 97.7 0.0047 1.6E-07 53.3 19.1 151 22-180 128-318 (528)
37 1wa5_B Importin alpha subunit; 97.7 0.0008 2.7E-08 58.4 13.8 151 22-180 141-331 (530)
38 4db8_A Armadillo-repeat protei 97.7 0.00024 8.2E-09 55.2 9.5 159 9-178 13-210 (252)
39 1wa5_B Importin alpha subunit; 97.7 0.0027 9.3E-08 55.0 16.8 164 10-179 175-372 (530)
40 1qgr_A Protein (importin beta 97.7 0.0023 7.8E-08 58.1 16.9 170 11-180 171-398 (876)
41 2qk2_A LP04448P; mini spindles 97.6 0.001 3.5E-08 51.8 12.7 140 10-156 54-206 (242)
42 4db8_A Armadillo-repeat protei 97.6 0.00049 1.7E-08 53.4 10.1 151 18-176 61-250 (252)
43 4db6_A Armadillo repeat protei 97.4 0.00042 1.4E-08 52.3 7.6 129 42-178 11-168 (210)
44 3ul1_B Importin subunit alpha- 97.2 0.011 3.8E-07 51.2 15.0 61 13-75 59-130 (510)
45 2bpt_A Importin beta-1 subunit 97.2 0.018 6.3E-07 52.0 16.9 161 15-179 99-297 (861)
46 2qk1_A Protein STU2; STU2P, XM 97.1 0.0097 3.3E-07 47.0 12.8 148 9-157 57-222 (249)
47 3tpo_A Importin subunit alpha- 97.1 0.021 7.2E-07 49.6 15.9 166 13-180 78-325 (529)
48 2vgl_A Adaptor protein complex 96.9 0.01 3.4E-07 53.1 12.1 132 16-155 79-216 (621)
49 1w63_A Adapter-related protein 96.8 0.0092 3.1E-07 53.2 10.7 126 21-154 80-207 (618)
50 1xqr_A HSPBP1 protein; armadil 96.8 0.018 6E-07 46.8 11.5 132 19-156 90-239 (296)
51 2z6g_A B-catenin; FULL-length, 96.7 0.014 4.8E-07 53.4 11.7 134 10-154 152-304 (780)
52 1te4_A Conserved protein MTH18 96.5 0.0048 1.7E-07 43.5 5.7 112 42-175 11-131 (131)
53 1jdh_A Beta-catenin; beta-cate 96.5 0.058 2E-06 45.9 13.3 133 10-153 19-170 (529)
54 1w63_A Adapter-related protein 96.5 0.031 1.1E-06 49.7 11.8 114 57-178 81-209 (618)
55 4ady_A RPN2, 26S proteasome re 96.4 0.085 2.9E-06 49.4 14.5 89 87-181 577-680 (963)
56 1jdh_A Beta-catenin; beta-cate 96.2 0.45 1.6E-05 40.3 18.1 150 21-178 153-340 (529)
57 3tpo_A Importin subunit alpha- 96.2 0.087 3E-06 45.6 13.2 160 11-178 250-450 (529)
58 3ul1_B Importin subunit alpha- 96.1 0.17 6E-06 43.6 14.6 164 17-180 149-348 (510)
59 1te4_A Conserved protein MTH18 96.1 0.00083 2.8E-08 47.5 -0.4 108 21-151 22-129 (131)
60 2z6h_A Catenin beta-1, beta-ca 96.0 0.054 1.9E-06 48.1 11.1 134 10-154 16-168 (644)
61 2z6g_A B-catenin; FULL-length, 95.8 0.53 1.8E-05 42.9 16.7 149 22-178 287-473 (780)
62 3tjz_B Coatomer subunit gamma; 95.7 0.15 5E-06 42.6 11.8 137 11-155 68-205 (355)
63 2of3_A ZYG-9; multifunctional 95.6 0.67 2.3E-05 37.0 17.6 169 4-175 30-234 (266)
64 2z6h_A Catenin beta-1, beta-ca 95.3 1.3 4.3E-05 39.1 17.0 148 22-177 151-336 (644)
65 1xm9_A Plakophilin 1; armadill 94.8 0.93 3.2E-05 38.5 14.2 115 10-135 4-136 (457)
66 2vgl_A Adaptor protein complex 94.7 0.55 1.9E-05 41.8 13.0 115 56-178 84-217 (621)
67 3now_A UNC-45 protein, SD10334 94.0 2.8 9.6E-05 38.6 16.3 140 28-178 598-783 (810)
68 3now_A UNC-45 protein, SD10334 93.8 0.69 2.4E-05 42.7 11.9 129 43-180 495-655 (810)
69 3oc3_A Helicase MOT1, MOT1; re 93.7 0.42 1.4E-05 42.7 9.6 115 57-176 185-327 (800)
70 3b2a_A TON_1937, putative unch 93.6 0.91 3.1E-05 35.9 10.6 134 42-178 32-180 (265)
71 3nmw_A APC variant protein; AR 92.7 2.7 9.1E-05 34.7 12.9 142 10-156 172-335 (354)
72 4ffb_C Protein STU2; tubulin f 91.7 3.9 0.00013 32.0 12.7 106 16-121 107-216 (278)
73 2db0_A 253AA long hypothetical 91.5 3.7 0.00013 31.5 11.6 153 19-180 39-213 (253)
74 4ffb_C Protein STU2; tubulin f 90.4 5.2 0.00018 31.2 12.9 163 8-176 7-211 (278)
75 2of3_A ZYG-9; multifunctional 89.6 2.4 8E-05 33.8 9.1 104 14-124 135-243 (266)
76 3oc3_A Helicase MOT1, MOT1; re 88.9 4.4 0.00015 36.3 10.9 143 25-176 242-403 (800)
77 1xm9_A Plakophilin 1; armadill 88.8 9.1 0.00031 32.2 12.9 134 9-153 284-447 (457)
78 3nmz_A APC variant protein; pr 88.2 11 0.00039 32.1 16.3 152 21-179 253-452 (458)
79 3nmz_A APC variant protein; pr 88.1 8.3 0.00028 33.0 12.2 131 22-155 298-450 (458)
80 3l9t_A Putative uncharacterize 87.0 6.9 0.00024 30.6 10.1 69 57-136 150-221 (240)
81 2x19_B Importin-13; nuclear tr 86.7 10 0.00035 34.8 12.8 153 22-180 69-271 (963)
82 3u0r_A Apoptosis inhibitor 5; 86.6 11 0.00037 32.8 11.8 72 59-139 41-113 (507)
83 1wa5_C Importin alpha RE-expor 86.6 20 0.00067 33.1 18.8 116 59-178 471-629 (960)
84 1vsy_5 Proteasome activator BL 86.4 1.1 3.6E-05 42.4 6.0 58 62-119 817-875 (997)
85 4ady_A RPN2, 26S proteasome re 86.0 23 0.00077 33.4 14.5 166 7-188 540-730 (963)
86 3nmw_A APC variant protein; AR 85.7 14 0.00046 30.3 18.5 152 21-179 137-336 (354)
87 3l6x_A Catenin delta-1; cateni 85.0 20 0.00068 31.7 14.5 122 21-150 100-265 (584)
88 2iw3_A Elongation factor 3A; a 83.3 21 0.00072 33.7 13.2 163 9-175 12-202 (986)
89 2x1g_F Cadmus; transport prote 82.4 5.4 0.00018 36.8 8.9 70 7-78 38-117 (971)
90 4gmo_A Putative uncharacterize 80.2 3.6 0.00012 36.9 6.7 60 56-120 44-108 (684)
91 3l6x_A Catenin delta-1; cateni 78.2 36 0.0012 30.0 13.6 87 47-138 312-407 (584)
92 3grl_A General vesicular trans 77.4 35 0.0012 30.6 12.0 125 6-137 75-219 (651)
93 1vsy_4 Proteasome activator BL 77.2 32 0.0011 31.6 12.1 100 81-181 328-437 (799)
94 1vsy_5 Proteasome activator BL 74.6 16 0.00056 34.4 9.6 89 81-172 127-221 (997)
95 3tjz_B Coatomer subunit gamma; 72.6 39 0.0013 27.8 14.9 145 24-177 40-205 (355)
96 3tt9_A Plakophilin-2; cell adh 72.4 31 0.001 26.5 10.2 99 10-119 10-126 (233)
97 3opb_A SWI5-dependent HO expre 70.0 67 0.0023 29.4 13.1 108 43-155 606-728 (778)
98 3tt9_A Plakophilin-2; cell adh 69.5 36 0.0012 26.1 13.6 125 21-153 62-227 (233)
99 3l9t_A Putative uncharacterize 69.5 38 0.0013 26.4 13.3 80 56-149 81-162 (240)
100 4hat_C Exportin-1; heat repeat 69.4 3 0.0001 39.4 3.3 23 160-182 465-487 (1023)
101 3o2t_A Symplekin; heat repeat, 68.6 51 0.0017 27.5 15.6 149 9-176 23-182 (386)
102 3grl_A General vesicular trans 63.6 56 0.0019 29.3 10.2 143 9-155 22-195 (651)
103 3u0r_A Apoptosis inhibitor 5; 59.9 86 0.003 27.2 13.9 146 10-158 98-270 (507)
104 3m1i_C Exportin-1; heat repeat 56.8 1.2E+02 0.0043 28.1 11.8 21 159-179 464-484 (1049)
105 3s4w_B Protein FACD2, fanconi 50.7 1.6E+02 0.0055 28.7 11.5 92 24-119 358-469 (1323)
106 1vdy_A Hypothetical protein (R 49.5 9.8 0.00033 27.2 2.4 46 110-155 30-78 (140)
107 2iw3_A Elongation factor 3A; a 47.6 1.9E+02 0.0063 27.3 17.5 125 12-139 96-226 (986)
108 3b2a_A TON_1937, putative unch 38.8 1.4E+02 0.0048 23.4 16.4 125 21-150 43-174 (265)
109 4f52_E Glomulin; cullin-ring E 36.7 1.1E+02 0.0037 27.1 7.5 70 9-80 362-436 (596)
110 3o2t_A Symplekin; heat repeat, 33.8 54 0.0019 27.3 4.9 83 62-149 41-123 (386)
111 4gmo_A Putative uncharacterize 33.6 53 0.0018 29.2 5.1 65 92-156 38-106 (684)
112 2f31_A Diaphanous protein homo 32.7 1.1E+02 0.0036 23.2 6.2 112 61-182 69-185 (233)
113 3ls8_A Phosphatidylinositol 3- 31.9 22 0.00074 31.7 2.2 44 10-55 95-138 (614)
114 1ho8_A Vacuolar ATP synthase s 31.9 67 0.0023 27.7 5.2 34 87-120 446-479 (480)
115 2x6h_A GH13170P, VPS34, phosph 31.5 41 0.0014 30.4 3.9 50 3-56 104-153 (696)
116 2km4_A Regulator of TY1 transp 31.4 1.3E+02 0.0045 20.9 7.1 69 1-77 1-70 (142)
117 1lrv_A LRV, leucine-rich repea 31.4 12 0.00041 29.1 0.4 14 21-34 60-73 (244)
118 1n6j_G Calcineurin-binding pro 31.0 38 0.0013 17.6 2.2 19 80-98 8-26 (35)
119 1lsh_A Lipovitellin (LV-1N, LV 29.8 2.7E+02 0.0092 26.2 9.4 75 25-100 492-578 (1056)
120 3dad_A FH1/FH2 domain-containi 28.4 2.4E+02 0.0083 23.0 13.5 138 11-157 118-288 (339)
121 3opb_A SWI5-dependent HO expre 27.8 3.5E+02 0.012 24.7 11.3 121 14-139 608-760 (778)
122 2jak_A Serine/threonine-protei 27.5 2.7E+02 0.0092 23.2 15.1 157 12-170 175-360 (392)
123 3hhm_A Phosphatidylinositol-4, 27.0 50 0.0017 31.5 3.8 52 23-75 630-682 (1091)
124 3eg5_B Protein diaphanous homo 26.6 2.5E+02 0.0084 23.0 7.8 111 61-181 135-250 (383)
125 2wxf_A Phosphatidylinositol-4, 25.0 57 0.0019 30.6 3.8 64 10-75 472-535 (940)
126 2b6c_A Hypothetical protein EF 24.0 1.6E+02 0.0053 22.0 5.7 27 93-119 163-190 (220)
127 3a7m_A Flagellar protein FLIT; 24.0 53 0.0018 22.6 2.7 35 6-40 57-91 (122)
128 3nkz_A Flagellar protein FLIT; 22.5 60 0.0021 22.4 2.7 35 6-40 60-94 (123)
129 1t06_A Hypothetical protein; s 22.3 2.5E+02 0.0087 21.1 11.1 60 57-119 119-182 (235)
130 1lsh_A Lipovitellin (LV-1N, LV 21.3 2.8E+02 0.0095 26.1 7.8 92 10-110 438-536 (1056)
131 1rw2_A ATP-dependent DNA helic 20.9 1.4E+02 0.0047 21.4 4.5 56 84-139 53-112 (152)
132 2rg8_A Programmed cell death p 20.9 1.8E+02 0.0063 20.8 5.3 40 120-159 38-77 (165)
133 1e7u_A Phosphatidylinositol 3- 20.3 29 0.00099 32.6 0.8 63 11-75 484-546 (961)
134 2db0_A 253AA long hypothetical 20.3 2.9E+02 0.01 21.1 10.1 93 21-119 154-248 (253)
135 1q2z_A ATP-dependent DNA helic 20.3 1.2E+02 0.004 20.6 3.9 56 84-139 22-81 (120)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=8.2e-30 Score=235.02 Aligned_cols=179 Identities=64% Similarity=0.964 Sum_probs=163.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
|+|+|+++++++|.++|.+++|||+++|++||++|++++.+|+|..+|+.++...++.+..+|++|+++|||.|.++|..
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 78999999999999999999999999999999999999999999999999997446778999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc---
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL--- 157 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l--- 157 (191)
++++.|..||+.++++|.++++.+|++++.+++.|++.++++.||++++.|.+.++++++..+++++.+|..+++++
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987776521
Q ss_pred ---------------------CCCcHHHHHHHHHHHHHHhhhh
Q psy9906 158 ---------------------FHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 158 ---------------------~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
.+++..+|.+|+.+++.++.+.
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 2457889999999998877543
No 2
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.93 E-value=1.4e-25 Score=209.71 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc------CC
Q psy9906 8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY------EF 81 (191)
Q Consensus 8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~------~i 81 (191)
++++++.++|.++++||+++| ||++|++++++|+|+.+|++++. +++.+.++|++|+++|||.|+++|. .+
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred CcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 467899999999999999999 99999999999999999999996 4566889999999999999999998 79
Q ss_pred ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
++++|..||+.+++++.++++.+|++++.+|+.|+++|||++||++++.|++.++++++..+++++.+|..+++.+
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887899999999999999999999999999999999999999899999999998898865
No 3
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=4.4e-24 Score=182.08 Aligned_cols=166 Identities=21% Similarity=0.273 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-----------h
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT--HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-----------F 78 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-----------W 78 (191)
+|.++|.++++||+++|++||++|++++. .|+|+.+|+.++. ..+.+..+|++|+++|||.++++ |
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 58899999999999999999999999987 5899999999997 34568899999999999999765 6
Q ss_pred cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC--CccccchhhhHHHHHhh
Q psy9906 79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ--DYNVCELLPVLLPILKE 155 (191)
Q Consensus 79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~--~~~~~~~~l~~L~~l~e 155 (191)
..++++.|..||+.+++.|.++++.+ ++++.+|+.|+++++| +.||+++|.|++.++++ ++..+++++.+|..+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988888 9999999999999988 59999999999999988 88899999999988776
Q ss_pred hc--------------------CCC--cHHHHHHHHHHHHHHhhhh
Q psy9906 156 TL--------------------FHH--DWEIKESGILALGAIAEVN 179 (191)
Q Consensus 156 ~l--------------------~~~--~~~~r~~~i~~~~ai~~~~ 179 (191)
++ .+. +..+|.+++.+++.+++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 43 223 5889999999999876543
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.89 E-value=5.4e-23 Score=187.84 Aligned_cols=167 Identities=25% Similarity=0.285 Sum_probs=148.7
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh---------
Q psy9906 10 LIQILQLLKES-QSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR--------- 77 (191)
Q Consensus 10 ~~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~--------- 77 (191)
.+++.++|.++ ++||+++|++||++|++++++ |+|+.+|++++. +.+.+..+|++|+++|||.|+++
T Consensus 3 ~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~-~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLI-DENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 46899999999 999999999999999999875 899999999996 34468899999999999998654
Q ss_pred --hcC-CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC-CccccchhhhHHHH
Q psy9906 78 --FYE-FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ-DYNVCELLPVLLPI 152 (191)
Q Consensus 78 --W~~-i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~ 152 (191)
|.. ++++.|..||+.+++.|.++++.+|++++.+++.|++.++| +.||++++.|.+.++++ +++.+++++.++..
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 675 99999999999999999999999999999999999999988 59999999999999988 88899999999988
Q ss_pred HhhhcC----------------------CC--cHHHHHHHHHHHHHHhh
Q psy9906 153 LKETLF----------------------HH--DWEIKESGILALGAIAE 177 (191)
Q Consensus 153 l~e~l~----------------------~~--~~~~r~~~i~~~~ai~~ 177 (191)
+++.+. +. +..+|.+++.+++.+++
T Consensus 162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 876432 22 67899999999998754
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.89 E-value=1.1e-22 Score=189.28 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=135.7
Q ss_pred HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH
Q psy9906 9 GLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE 87 (191)
Q Consensus 9 ~~~~l~~lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~ 87 (191)
+++++.+++.. ..+||++.|++||++|++++++|+++.++..++. ++.+..+|++|+++|||.|+++|..+++++|.
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 99 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYE 99 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHH
Confidence 57889999988 5568999999999999999999999999999986 46789999999999999999999999999999
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhc-----CCccccchhhhHHHHHhhhcCC
Q psy9906 88 FIKQECLSAIGD---PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDS-----QDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 88 ~ik~~ll~~l~~---~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~-----~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
.||+.|++.+.+ .++.||++++.+++.|+++|||+.||++++.|++.+++ +++..+++++.+|..++|++++
T Consensus 100 ~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~ 179 (963)
T 2x19_B 100 SLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQT 179 (963)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhc
Confidence 999999999875 47999999999999999999999999999999999976 2556789999999999986643
Q ss_pred C
Q psy9906 160 H 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 180 ~ 180 (963)
T 2x19_B 180 S 180 (963)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.89 E-value=6.4e-23 Score=193.35 Aligned_cols=150 Identities=18% Similarity=0.239 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906 7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k 86 (191)
+.+++++.++|..+++||++.|++||++|++++++|+++.++..++.. +.+..+|++|+++|||.|+++|..+++++|
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~ 89 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence 456899999999999999999999999999999999999999999963 568899999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC---------CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 87 EFIKQECLSAIGDP---------SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 87 ~~ik~~ll~~l~~~---------~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
..||+.+++.+.+. ++.+|++++.+++.|+++|||+.||++++.|++.++ +++..+++++.+|..++|++
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHH
Confidence 99999999998752 489999999999999999999999999999999997 56667899999999999876
Q ss_pred CC
Q psy9906 158 FH 159 (191)
Q Consensus 158 ~~ 159 (191)
++
T Consensus 169 ~~ 170 (1049)
T 3m1i_C 169 FD 170 (1049)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=191.39 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 7 EEGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
++..+++.+++..+++| |++.|++||++|++++++|+++.++..++. +.+.+..+|++|+++|||.|+++|..++++
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 45688899999999998 888999999999999999988888888875 456789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc
Q psy9906 85 VSEFIKQECLSAIGD-------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~-------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l 157 (191)
+|..||+.+++.+.+ .++.||++++.+++.|+++|||++||++++.|++++++ ++..+++++.+|..++|++
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 999999999998763 46999999999999999999999999999999999976 5677899999999999976
Q ss_pred CCC
Q psy9906 158 FHH 160 (191)
Q Consensus 158 ~~~ 160 (191)
++.
T Consensus 165 ~~~ 167 (1204)
T 3a6p_A 165 VTF 167 (1204)
T ss_dssp HTS
T ss_pred ccc
Confidence 543
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.86 E-value=1.5e-22 Score=188.91 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+++++.+++..+++||++.|++||+.|++++++|+++.++..++. .+.+..+|++|+++|||.|+++|..+++++|..
T Consensus 5 d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQ--LGKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp ------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTC--TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence 477888899889999999999999999999999999999999996 457889999999999999999999999999999
Q ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC------CccccchhhhHHHHHhhhc
Q psy9906 89 IKQECLSAIGD---PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ------DYNVCELLPVLLPILKETL 157 (191)
Q Consensus 89 ik~~ll~~l~~---~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~------~~~~~~~~l~~L~~l~e~l 157 (191)
||+.|++.+.+ .++.||++++.+++.|++++|| .||++++.|++.++++ ++..+++++.+|..++|++
T Consensus 83 ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 83 LKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence 99999999875 3799999999999999999999 9999999999999875 5667899999999888754
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.84 E-value=1.3e-20 Score=172.32 Aligned_cols=166 Identities=22% Similarity=0.281 Sum_probs=146.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhh-----------hhhh
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV-----------RARF 78 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i-----------~~~W 78 (191)
+|.++|.++++||+++|++||++|+++..+ |+|..+|+.++. +.+.+..+|++|+++|||.+ ..+|
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 578999999999999999999999999876 889999999996 34457899999999999997 3679
Q ss_pred cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcC--CccccchhhhHHHHHhh
Q psy9906 79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQ--DYNVCELLPVLLPILKE 155 (191)
Q Consensus 79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~--~~~~~~~~l~~L~~l~e 155 (191)
..++++.|..||+.+++.|.++++.+ ++++.+++.|++.++| +.||++++.+.+.+.++ ++..+++++.+|..+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887778 9999999999999977 99999999999999998 88889999999977765
Q ss_pred hc--------------------CCC--cHHHHHHHHHHHHHHhhhh
Q psy9906 156 TL--------------------FHH--DWEIKESGILALGAIAEVN 179 (191)
Q Consensus 156 ~l--------------------~~~--~~~~r~~~i~~~~ai~~~~ 179 (191)
.+ .+. ++.+|..++.+++.++++.
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 233 5889999999999987653
No 10
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.83 E-value=2.1e-20 Score=176.12 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+++.|.+++...++|+++.|++|+++|++++++|+++..+..++. ++.++.+|++|+++|||.|+++|..+++++|..
T Consensus 14 dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 578889999999999989999999999999999999999999995 356789999999999999999999999999999
Q ss_pred HHHHHHHhhCC----C-----CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906 89 IKQECLSAIGD----P-----SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 89 ik~~ll~~l~~----~-----~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
||+.+++.+.. + ++.++++++.+++.|++++||+.||++++.+++.+++ ++..++.++.+|..+.|++++
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 1 5788999999999999999999999999999999975 456789999999999998754
No 11
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.83 E-value=2.8e-20 Score=175.45 Aligned_cols=149 Identities=20% Similarity=0.284 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+++.|.+++...++||++.|++|++.|++++++|+++..+..++. .+.++.+|++|+.+||+.|+++|..+++++|..
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 588999999999999999999999999999999999999999985 456889999999999999999999999999999
Q ss_pred HHHHHHHhhCC---------CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906 89 IKQECLSAIGD---------PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 89 ik~~ll~~l~~---------~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
||+.+++.+.. .++.++++++.+++.|++++||+.||++++++++.+++ ++..++.++.+|..+.|++++
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d 182 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFD 182 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 99999998753 25788899999999999999999999999999999875 456789999999999999876
Q ss_pred C
Q psy9906 160 H 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 183 ~ 183 (1073)
T 3gjx_A 183 F 183 (1073)
T ss_dssp S
T ss_pred c
Confidence 4
No 12
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.76 E-value=5.7e-18 Score=159.09 Aligned_cols=148 Identities=14% Similarity=0.195 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh--
Q psy9906 9 GLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG-- 84 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~--d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~-- 84 (191)
+.+++.++++.+++| |++.|++|++.|+++++.|+++.++..++...+..+..+|++|+.+||+.|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~ 79 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence 488999999988888 7999999999999999999999999999963222388999999999999999 68889
Q ss_pred --HHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc-cccchhhhHHHHHhhh
Q psy9906 85 --VSEFIKQECLSAIGD-----PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY-NVCELLPVLLPILKET 156 (191)
Q Consensus 85 --~k~~ik~~ll~~l~~-----~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~-~~~~~~l~~L~~l~e~ 156 (191)
++..||+.+++.+.. .++.||++++.+++.|++++||..||++++.+++.+++++. ......+++|+.+.|+
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence 999999999998763 46899999999999999999999999999999999987654 3445566666766698
Q ss_pred cCCC
Q psy9906 157 LFHH 160 (191)
Q Consensus 157 l~~~ 160 (191)
+++.
T Consensus 160 v~~~ 163 (980)
T 3ibv_A 160 IADS 163 (980)
T ss_dssp HCCC
T ss_pred HHhc
Confidence 8764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.23 E-value=2.8e-10 Score=108.51 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=130.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC------C----hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHP------D----FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~------~----~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
.++.++|.+..|||+++|++|+..|.+..+.+ . ....++..+ .+.+..+|+.|+..|.+.+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L---~d~~~~vR~~A~~~L~~l~~----~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL---EDKNGEVQNLAVKCLGPLVS----K 78 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT---TCSSHHHHHHHHHHHHHHHT----T
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHH----h
Confidence 56889999999999999999999998765433 1 233333433 45688999999999988765 3
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC---------CCchHHHHHHHHhh-cCCccccchhhhHH
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK---------SWPELLPTLNDMLD-SQDYNVCELLPVLL 150 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~---------~Wpell~~L~~~l~-~~~~~~~~~~l~~L 150 (191)
++++....|++.+++.+.+++..+|..++.+++.|+...++. .|++++|.|++.+. ++++..+++++.+|
T Consensus 79 ~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 79 VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 566788899999999999988899999999999999988765 49999999999998 47788889999988
Q ss_pred HHHhhh-------------------cCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 151 PILKET-------------------LFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 151 ~~l~e~-------------------l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
..+++. +.+++..+|..++.+++.+++...
T Consensus 159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 766631 234568899999999999987654
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.71 E-value=2.9e-07 Score=80.17 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHhhcCCccccchhhhHHHHHhh----
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-WPELLPTLNDMLDSQDYNVCELLPVLLPILKE---- 155 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~-Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---- 155 (191)
.++..+..+...+...+.++++.+|..++.+++.++..-.++. +++++|.+..+++++++..+..++.+|..+.+
T Consensus 157 ~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 3455666777777777788999999999999999998765433 47899999999998888888888888765543
Q ss_pred -------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 156 -------------TLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 156 -------------~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
-+.+.+|.+|.+++.++|.|.++.
T Consensus 237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 224678999999999999998864
No 15
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.53 E-value=3.3e-06 Score=64.58 Aligned_cols=146 Identities=20% Similarity=0.190 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906 7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k 86 (191)
++.+..|++.| .++|..+|..|-..|..+.. ++....|...+. +.+..+|..|.-.|.+.-. ++
T Consensus 18 ~~~~~~L~~~L---~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~-------~~-- 81 (211)
T 3ltm_A 18 PEKVEMYIKNL---QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGD-------ER-- 81 (211)
T ss_dssp GGGHHHHHHHT---TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCC-------GG--
T ss_pred HhHHHHHHHHH---cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC-------HH--
Confidence 44455555555 47899999999999998866 678888888874 4578899999888866421 11
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hc
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TL 157 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l 157 (191)
.-..+++.|.++++.+|..+..+++.+.. ++.++.|..++.++++..+..+...|..+.+ -+
T Consensus 82 --~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 82 --AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp --GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22456667777888888888888877742 5677888888887777777777777655543 35
Q ss_pred CCCcHHHHHHHHHHHHHHhh
Q psy9906 158 FHHDWEIKESGILALGAIAE 177 (191)
Q Consensus 158 ~~~~~~~r~~~i~~~~ai~~ 177 (191)
.++++.+|..++.+++.+.+
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHHhCc
Confidence 56778888888888887744
No 16
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.49 E-value=6.7e-06 Score=62.37 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
....-.++....++|..+|..|-..|..+.. ++....|...+. +.+..+|..|...|.+.-. ++ .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~-------~~----~ 77 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGD-------ER----A 77 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------GG----G
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhCC-------HH----H
Confidence 3445566666678899999999999998865 677888888874 4578899999888765421 11 2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCCC
Q psy9906 90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFHH 160 (191)
Q Consensus 90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~~ 160 (191)
-..+++.|.++++.+|..+..+++.+.. |+.++.|...+.++++..+..+..+|..+.+ -+.+.
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~ 150 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE 150 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 3466677788888899888888887742 5678888888888888777777777755543 35567
Q ss_pred cHHHHHHHHHHHHHHh
Q psy9906 161 DWEIKESGILALGAIA 176 (191)
Q Consensus 161 ~~~~r~~~i~~~~ai~ 176 (191)
++.+|..++.++|.+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8889999988888874
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.44 E-value=1e-06 Score=76.59 Aligned_cols=81 Identities=11% Similarity=-0.045 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-----------------hcCCCc
Q psy9906 99 DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE-----------------TLFHHD 161 (191)
Q Consensus 99 ~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e-----------------~l~~~~ 161 (191)
+++..+|...+.+++.++..-.+..+++++|.+.++++++++..+..+..+|..+.+ -+.+.+
T Consensus 137 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 137 GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSC
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCc
Confidence 445666666677777766655445567777777777777777666676666655432 123456
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy9906 162 WEIKESGILALGAIAEVN 179 (191)
Q Consensus 162 ~~~r~~~i~~~~ai~~~~ 179 (191)
+.+|.+|+.+++.+++..
T Consensus 217 ~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 778888888887777653
No 18
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.23 E-value=2.5e-05 Score=59.09 Aligned_cols=143 Identities=16% Similarity=0.109 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
.+..|.++| .++|..+|..|-..|..+.. ++....|...+. +.++.+|..|+-.|.+.-. + .
T Consensus 46 ~~~~L~~~l---~~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-------~----~ 107 (201)
T 3ltj_A 46 AVEPLIKAL---KDEDAWVRRAAADALGQIGD-ERAVEPLIKALK---DEDGWVRQSAAVALGQIGD-------E----R 107 (201)
T ss_dssp GHHHHHHHT---TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------G----G
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-------H----H
Confidence 344444444 47899999999999998865 778888888774 4688899999988876421 1 1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC
Q psy9906 89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH 159 (191)
Q Consensus 89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~ 159 (191)
....+++.+.++++.+|..++.+++.+.. ++.++.|..++.++++..+..+...|..+.+ -+.+
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d 180 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET 180 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC
Confidence 34467778888999999999999998852 6788999999998888888888887755543 3345
Q ss_pred CcHHHHHHHHHHHHHHh
Q psy9906 160 HDWEIKESGILALGAIA 176 (191)
Q Consensus 160 ~~~~~r~~~i~~~~ai~ 176 (191)
+++.+|.+++.+++.|-
T Consensus 181 ~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHK 197 (201)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78999999998887754
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.20 E-value=2.6e-05 Score=59.51 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
.+..|.++| .++|..+|..|-..|..+.. ++....|...+. +.+..+|..|...|.+.-. ++
T Consensus 51 ~~~~L~~~l---~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~-------~~---- 112 (211)
T 3ltm_A 51 AVEPLIKAL---KDEDAWVRRAAADALGQIGD-ERAVEPLIKALK---DEDGWVRQSAAVALGQIGD-------ER---- 112 (211)
T ss_dssp GHHHHHHHT---TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-------GG----
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-------HH----
Confidence 344444444 46799999999999998875 778888888873 5678899999988876521 11
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------hcCC
Q psy9906 89 IKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------TLFH 159 (191)
Q Consensus 89 ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------~l~~ 159 (191)
....|++.+.++++.+|..++.+++.+. -++.++.|..++.++++..+..+...|..+.+ -+.+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d 185 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET 185 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC
Confidence 3356777888899999999999999884 26789999999988888888888877755543 3445
Q ss_pred CcHHHHHHHHHHHHHHhhhhh
Q psy9906 160 HDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 160 ~~~~~r~~~i~~~~ai~~~~~ 180 (191)
.+..+|.+++.+++.+-....
T Consensus 186 ~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 186 GTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CCHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHhcCCCCC
Confidence 789999999999988766544
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.19 E-value=4.2e-05 Score=60.86 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=33.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHH
Q psy9906 16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKN 72 (191)
Q Consensus 16 lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn 72 (191)
++....++|..+|..|-..|..+.. ++....|...+. +.+..+|..|+..|-+
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3334445677777777777776653 556666666653 3466777777766644
No 21
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.18 E-value=0.00014 Score=57.83 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhh--hCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH
Q psy9906 18 KESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK--LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS 95 (191)
Q Consensus 18 ~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~--~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~ 95 (191)
....++|..+|..|-..|.++...+.....++.++.. .++.+..+|..|+-.|.+.-... +.....+-..++.
T Consensus 61 ~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----~~~~~~~~~~L~~ 135 (280)
T 1oyz_A 61 EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQI 135 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----CcccHHHHHHHHH
Confidence 3345789999999999999887544444444443311 24568889999998887754321 1112234456777
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh-----------hhcCCCcHHH
Q psy9906 96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK-----------ETLFHHDWEI 164 (191)
Q Consensus 96 ~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~-----------e~l~~~~~~~ 164 (191)
.+.++++.+|..++.+++.+.. |+.++.|...+.++++..+..+...|..+. +.+.+.++.+
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~v 208 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEV 208 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHH
T ss_pred HhhCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHH
Confidence 7888888888888888876653 457788888888877777777777665553 2455677888
Q ss_pred HHHHHHHHHHHh
Q psy9906 165 KESGILALGAIA 176 (191)
Q Consensus 165 r~~~i~~~~ai~ 176 (191)
|..++.++|.+.
T Consensus 209 R~~A~~aL~~~~ 220 (280)
T 1oyz_A 209 RIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 888888888775
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=0.00013 Score=57.03 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=112.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcC------CCh---HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHH
Q psy9906 16 LLKESQSPDNLIQRAVQHKLEQLNTH------PDF---NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVS 86 (191)
Q Consensus 16 lL~~~~s~d~~~r~~AE~~L~~~~~~------~~~---~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k 86 (191)
+++...+.|-..|+.|-..|..+-.. +++ ...|...+. +..+..+|..|+..+......-=..+ ...-
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~ 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRF-SNYA 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGG-HHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence 44555688999999999999876542 233 334444442 25688899999999988886421112 2233
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHH-------------
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPIL------------- 153 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l------------- 153 (191)
..+=..+++.+.++...+|..++.++..++.... -+.++|.+...+++.++..+..++..+..+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 4455588888889999999999999999998653 357899999999888876666665555443
Q ss_pred --------hhhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 154 --------KETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 154 --------~e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
.+.+.+.++.+|.+|+.++|.++.-.
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 23345678999999999999977443
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.08 E-value=0.00029 Score=59.19 Aligned_cols=170 Identities=17% Similarity=0.213 Sum_probs=110.6
Q ss_pred HHHHHHHHHhcC-C--CHHHHHHHHHHHHHhhc----C-CC--hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 11 IQILQLLKESQS-P--DNLIQRAVQHKLEQLNT----H-PD--FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 11 ~~l~~lL~~~~s-~--d~~~r~~AE~~L~~~~~----~-~~--~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
..++..+...+. + +..+|..|-..+..+-. . .. +..+++..+.. ..+.+..+|..+.-.|...+..+-.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445555554443 3 58899999888876321 1 11 23444444432 2345788999999899888876544
Q ss_pred CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----------C------CC-------CchHHHHHHHHh
Q psy9906 80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----------L------KS-------WPELLPTLNDML 135 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----------~------~~-------Wpell~~L~~~l 135 (191)
.+.+.....+-+.++..+.+.+..+|..+...+..++.... . .. .+.++|.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 33332221344466677778889999999999999887630 1 11 167888888887
Q ss_pred hcC-------CccccchhhhHHHHHh----------------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 136 DSQ-------DYNVCELLPVLLPILK----------------ETLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 136 ~~~-------~~~~~~~~l~~L~~l~----------------e~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
... ++..+.++..+|..+. +.+.+.+|.+|++++.++|+|++|..
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 643 2344555655554443 34567899999999999999999876
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.06 E-value=0.00022 Score=54.00 Aligned_cols=156 Identities=21% Similarity=0.179 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
...|..+| .++|.++|..|-..|..+.... |....|..++. +.+..+|..|+..|.|....
T Consensus 14 ~~~l~~LL---~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~--- 84 (210)
T 4db6_A 14 LPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASG--- 84 (210)
T ss_dssp HHHHHHHT---TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTS---
T ss_pred hHHHHHHh---cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---
Confidence 33444444 3568999999999999887432 45566777764 45789999999999987642
Q ss_pred CCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 80 EFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 80 ~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
+++.+..+. ..++..|.++++.+|..++.++..++....... -.++++.|++++.+++...++.++.+|
T Consensus 85 --~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 85 --GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred --CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 233333333 467777888899999999999999997542111 246899999999988888888888777
Q ss_pred HHHhh--------------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906 151 PILKE--------------------TLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 151 ~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~ 176 (191)
..++. -+.+.+..+|+.|..+++.+.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 66553 123456677777777766654
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.98 E-value=0.0003 Score=59.06 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=112.9
Q ss_pred cCC-CHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 21 QSP-DNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 21 ~s~-d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
.++ |..+|..|-..|..+... .+....|..++. +.++.+|..|+-.|.|..... ++.+..+
T Consensus 74 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~vr~~a~~~L~~l~~~~-----~~~~~~~ 145 (450)
T 2jdq_A 74 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS---SEFEDVQEQAVWALGNIAGDS-----TMCRDYV 145 (450)
T ss_dssp TCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHccCC-----HHHHHHH
Confidence 345 789999999988887642 567788888874 458899999999998877532 2333322
Q ss_pred -----HHHHHHhhCC-CCHHHHHHHHHHHHHHHhhC-CCCC---CchHHHHHHHHhhcCCccccchhhhHHHHHhh----
Q psy9906 90 -----KQECLSAIGD-PSPLIRATVGILITTIASKG-DLKS---WPELLPTLNDMLDSQDYNVCELLPVLLPILKE---- 155 (191)
Q Consensus 90 -----k~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e-~~~~---Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---- 155 (191)
-..++..+.+ .+..+|..++.+++.++... +... -.+++|.|+.++.++++..+..+..+|..+++
T Consensus 146 ~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225 (450)
T ss_dssp HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH
Confidence 3456666775 68999999999999999765 2221 36899999999998887776666666655543
Q ss_pred ----------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 156 ----------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 156 ----------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
-+.+.++.+|..++.+++.+..+.+
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence 2456789999999999999987743
No 26
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.97 E-value=0.00015 Score=66.64 Aligned_cols=157 Identities=27% Similarity=0.355 Sum_probs=106.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-C--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH-P--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~-~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
.+++..+|..|-..|..+-.. + ++...+...+ ++.+..+|..|.-.|-+.+..+-..+.+... .+-.
T Consensus 184 ~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~---~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~ 259 (852)
T 4fdd_A 184 KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVE 259 (852)
T ss_dssp TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHH
Confidence 467899999999999866532 1 2333344433 4568899999999888887754332323322 3555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhC-----CCCCCchHHHHHHHHh-----------hc-----------CCccccc
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKG-----DLKSWPELLPTLNDML-----------DS-----------QDYNVCE 144 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-----~~~~Wpell~~L~~~l-----------~~-----------~~~~~~~ 144 (191)
.++..+.+.+..+|..+..++..++... .+..-+.++|.++..+ ++ .++..+.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 7777788889999999999999998643 1223457888888877 22 1222344
Q ss_pred hhhhHH----------------HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 145 LLPVLL----------------PILKETLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 145 ~~l~~L----------------~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
.+..+| +++.+.+.+.+|.+|++|+.++|+|++|...
T Consensus 340 ~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 340 CSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 444444 4444455678999999999999999998754
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.93 E-value=0.00019 Score=55.42 Aligned_cols=156 Identities=20% Similarity=0.150 Sum_probs=112.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
.++.-..++|.++|..|-..|..+.... |....|..++. +.+..+|..|+-.|.|..... ++
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCC-----hH
Confidence 3444445678899999999998886532 56777777774 456899999999998886531 33
Q ss_pred HHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 85 VSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 85 ~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
.+.. .=..++..|.+++..++..++.++..++...... .=.+.++.|++++.++++..+..++.+|..++.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3332 2335666777889999999999999999644110 013688999999998888777777777655542
Q ss_pred --------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 156 --------------------TLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 156 --------------------~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
-+.+.+..+|..++.+++.+..+
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 24456789999999999998864
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.91 E-value=0.0001 Score=70.33 Aligned_cols=131 Identities=12% Similarity=0.094 Sum_probs=103.7
Q ss_pred HHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchH
Q psy9906 48 LIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPEL 127 (191)
Q Consensus 48 L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpel 127 (191)
+..++....+.+..+|..|.--|.+.+......+++.....+-..+++.|.+++..+|+.++.+++.++..-.+..++.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44455545678999999999999998876655666666677888899999999999999999999999987766778899
Q ss_pred HHHHHHHhhcCCccccchhhhHHHHHhh-------------------------hcC-CCcHHHHHHHHHHHHHHhhh
Q psy9906 128 LPTLNDMLDSQDYNVCELLPVLLPILKE-------------------------TLF-HHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 128 l~~L~~~l~~~~~~~~~~~l~~L~~l~e-------------------------~l~-~~~~~~r~~~i~~~~ai~~~ 178 (191)
++.|...+.+++...++++..+|..+.+ .+. +.++.+|..++.+++.+.+.
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 9999999988777667777666644432 233 36789999999999988753
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.87 E-value=0.00075 Score=56.56 Aligned_cols=158 Identities=12% Similarity=-0.012 Sum_probs=111.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
.++|..+|..|-..|..+... .+....|..++. .+.+..+|..|.-.|.|.....-..........+=
T Consensus 117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 457899999999999887753 356677777774 34578999999999998875431111111112334
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHh------------
Q psy9906 91 QECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILK------------ 154 (191)
Q Consensus 91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~------------ 154 (191)
..+++.+.+.+..++..++.+++.++....+. .-.++++.|+.++.++++..++.++.+|..+.
T Consensus 195 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 46777788889999999999999998754110 01357888999998888777666666665443
Q ss_pred --------hhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 155 --------ETLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 155 --------e~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
+-+.++++.+|..++.+++.|+.|..
T Consensus 275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~ 308 (450)
T 2jdq_A 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308 (450)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 23456789999999999999987643
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.86 E-value=0.00017 Score=63.88 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
.++.-+.+-..+.+++.++++.||+.++.++..|++.. |+.++ ++++.+..++.++|+..+.+|..+|..+++
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 34555566667888888889999999999999999855 67777 588999999988887777777777766654
No 31
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.85 E-value=0.00043 Score=61.36 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=112.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
+.++-...-++|...|+.|-..+--+... .+....+..++...++.+..+|+++.+++++.... .++....+-+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~n 89 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-----QPDMAIMAVN 89 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-----CchHHHHHHH
Confidence 33444444577888888888887754431 22222333443334567899999999999988764 2444445566
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh----------------
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------------- 155 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------- 155 (191)
.+.+.|.++++.+|..+..++ +....++-++.+++.+..++.++++..+..|..++..+.+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L---~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHH---HTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 777788889999996655444 4444667889999999999999998888888887754432
Q ss_pred -hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 156 -TLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 156 -~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
-+.+.+..++.+|+.+++.|....
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHhCCCChhHHHHHHHHHHHHHhhC
Confidence 345678899999999999987653
No 32
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.85 E-value=0.00043 Score=56.50 Aligned_cols=170 Identities=13% Similarity=0.058 Sum_probs=114.0
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHhhcC---------CChHHHHHH-HHhhhCCC
Q psy9906 1 MAWQPQEEGLIQILQLLKESQSPD------------NLIQRAVQHKLEQLNTH---------PDFNNYLIF-VLTKLTSE 58 (191)
Q Consensus 1 ~~~~p~~~~~~~l~~lL~~~~s~d------------~~~r~~AE~~L~~~~~~---------~~~~~~L~~-il~~~~~~ 58 (191)
|..+| .+...+-+++.-..+|+ .+.|..|-..|.++-.+ -|-+..|+. ++ .+.
T Consensus 20 ~~~~~--d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL---~s~ 94 (296)
T 1xqr_A 20 MRGQR--GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL---EAG 94 (296)
T ss_dssp CCSCH--HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT---TCS
T ss_pred HcCCC--CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH---cCC
Confidence 44443 33555555555555552 24666677777766543 234455555 55 356
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H----HHHHHhhCC-CCHHHHHHHHHHHHHHHhhCCCCC--C--chHH
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K----QECLSAIGD-PSPLIRATVGILITTIASKGDLKS--W--PELL 128 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k----~~ll~~l~~-~~~~ir~~~~~~i~~Ia~~e~~~~--W--pell 128 (191)
++.+|..|+-.|-|.... ++..+..+ + ..|+..|.+ ++..+|..++.+++.|++...+.. . .+.+
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp SHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 889999999999988753 23333322 2 355566664 578999999999999998653321 1 3588
Q ss_pred HHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 129 PTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 129 ~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
|.|..++.+++...+.-+..+|..++. -+.+++..+|+.++.+++.|+.+..
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 999999998887777667666665542 2345678899999999999999843
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.79 E-value=0.0011 Score=50.87 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=111.9
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC-C---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH-
Q psy9906 20 SQSPDNLIQRAVQHKLEQLNTH-P---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF- 88 (191)
Q Consensus 20 ~~s~d~~~r~~AE~~L~~~~~~-~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~- 88 (191)
..++|..+|..|-..|..+... + +....|..++. +.+..+|..|+-.|.|.... +++.+..
T Consensus 53 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~ 124 (252)
T 4hxt_A 53 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASG-----PDEAIKAI 124 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTS-----CHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 3456889999999999988763 2 55666777764 46789999999999998752 2333332
Q ss_pred ----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHHHHHhh-----
Q psy9906 89 ----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLLPILKE----- 155 (191)
Q Consensus 89 ----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----- 155 (191)
.=..+++.+.++++.++..++.++..++....... =.+.++.|++++.++++..+..++.+|..++.
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 23356677778889999999999999987541110 14589999999998888777777777755542
Q ss_pred ---------------hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 156 ---------------TLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 156 ---------------~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
-+.+.+..+|+.|+.+++.+..+...
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 23456788999999999888876543
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.006 Score=48.26 Aligned_cols=156 Identities=9% Similarity=0.055 Sum_probs=109.4
Q ss_pred HhcCCCHHHHHHHHHHHHH-hh-cC-------CChHHH---HHHHHhhhCCCChhHHhHHHHHHHHhhhhhh-cCCChhH
Q psy9906 19 ESQSPDNLIQRAVQHKLEQ-LN-TH-------PDFNNY---LIFVLTKLTSEDEPTRSLSGLILKNNVRARF-YEFPPGV 85 (191)
Q Consensus 19 ~~~s~d~~~r~~AE~~L~~-~~-~~-------~~~~~~---L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W-~~i~~~~ 85 (191)
...|++-..|++|-..|.. +. .. .+|... |...+. ...+..+|..|+..+......-= ..+...-
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 3458899999999999998 64 31 233333 333332 35577899999988888774321 2333123
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CC---CchHHHHHHHHhhcCCccccchhhhHHHHHh-------
Q psy9906 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL-KS---WPELLPTLNDMLDSQDYNVCELLPVLLPILK------- 154 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~---Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~------- 154 (191)
...+=..+++.+.+..+.++..+..++..|+..-.| .. =+++++.|+..+++.++..++.++.++..+.
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 334555788888888899999999999999987633 22 2379999999999888877777666553222
Q ss_pred ----------------hhcCCCcHHHHHHHHHHHHHHh
Q psy9906 155 ----------------ETLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 155 ----------------e~l~~~~~~~r~~~i~~~~ai~ 176 (191)
+-+.+.+..+|.+|+.++++|.
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2344567889999999999975
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.74 E-value=0.00066 Score=58.74 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=112.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-CC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNT-HP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEF 81 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i 81 (191)
+-.++....++|...|..|-..|..+.. .+ |....|..++. ...++.+|..|+-.|.|....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~~v~~~A~~~L~~l~~~----- 148 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT--REDFPQLQFEAAWALTNIASG----- 148 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHhCC-----
Confidence 5556666678899999999999987743 22 56777888875 233488999999999887752
Q ss_pred ChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHh-hcCCccccchhhhHHH
Q psy9906 82 PPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDML-DSQDYNVCELLPVLLP 151 (191)
Q Consensus 82 ~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l-~~~~~~~~~~~l~~L~ 151 (191)
+++.+.. .=..++..|.+++..+|..++.++..|+....... -.+.++.|+.++ .++++..+..+..+|.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1233332 22356667778899999999999999986542100 124678888888 4556666666666665
Q ss_pred HHhh-------------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 152 ILKE-------------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 152 ~l~e-------------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
.++. -+.+.++.++..++.+++.+.++..
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 5543 3456789999999999999887654
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.71 E-value=0.0047 Score=53.29 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=112.4
Q ss_pred CCC-HHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 22 SPD-NLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 22 s~d-~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
++| ..+|..|-..|.++... .|....|+.++. +.+..+|..|+-.|.|.... ++..+..+.
T Consensus 128 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~aL~~l~~~-----~~~~~~~i~ 199 (528)
T 4b8j_A 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG---SSSDDVREQAVWALGNVAGD-----SPKCRDLVL 199 (528)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHT-----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC-----ChhhHHHHH
Confidence 445 88999998888887763 256677777774 46789999999999988642 234444443
Q ss_pred -----HHHHHhh-CCCCHHHHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh------
Q psy9906 91 -----QECLSAI-GDPSPLIRATVGILITTIASKGDLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE------ 155 (191)
Q Consensus 91 -----~~ll~~l-~~~~~~ir~~~~~~i~~Ia~~e~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e------ 155 (191)
..|+..| .+++..++..++.++..++...+...+ .+++|.|+.++.++++..+..++.+|..+++
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 2566667 357899999999999999988633332 5689999999998888777777777766553
Q ss_pred --------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 156 --------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 156 --------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
-+.++++.++..++.++|.|+.|.+
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH
Confidence 2456788999999999999987654
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.69 E-value=0.0008 Score=58.35 Aligned_cols=151 Identities=16% Similarity=0.209 Sum_probs=112.1
Q ss_pred CC-CHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-
Q psy9906 22 SP-DNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI- 89 (191)
Q Consensus 22 s~-d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i- 89 (191)
++ +..+|..|-..|..+... ++....|..++. +.+..+|..|+-.|.|.... +++.+..+
T Consensus 141 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~-----~~~~~~~~~ 212 (530)
T 1wa5_B 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY---TGSVEVKEQAIWALGNVAGD-----STDYRDYVL 212 (530)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HCCHHHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCC-----CccchHHHH
Confidence 44 788999998888877652 466778888875 35788999999999888753 12333332
Q ss_pred ----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh------
Q psy9906 90 ----KQECLSAIGDPSPLIRATVGILITTIASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE------ 155 (191)
Q Consensus 90 ----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e------ 155 (191)
=..|+..+.+++..++..++.+++.++... +...+ .+++|.|+.++.++++..+..++.+|..+..
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 292 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 235666677788999999999999999876 33233 3689999999998887777777777766553
Q ss_pred --------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 156 --------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 156 --------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
-+.+.++.+|..++.+++.|+.|.+
T Consensus 293 ~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 2345789999999999999987643
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.69 E-value=0.00024 Score=55.22 Aligned_cols=159 Identities=21% Similarity=0.152 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF 78 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W 78 (191)
+...+...| .++|.++|..|-..|..+-. ..|....|..++. +.+..+|..|+-.|.|.....
T Consensus 13 ~~~~~~~~L---~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~- 85 (252)
T 4db8_A 13 ELPQMTQQL---NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGG- 85 (252)
T ss_dssp SHHHHHHHH---HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSC-
T ss_pred hHHHHHHHH---cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCC-
Confidence 355555555 46677888888888843211 2467777888874 346889999999999887522
Q ss_pred cCCChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-C---CchHHHHHHHHhhcCCccccchhhhH
Q psy9906 79 YEFPPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLK-S---WPELLPTLNDMLDSQDYNVCELLPVL 149 (191)
Q Consensus 79 ~~i~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~---Wpell~~L~~~l~~~~~~~~~~~l~~ 149 (191)
++.+.. .-..+++.|.++++.+|..++.++..++..+... . =.+.+|.|++++.++++..++.++.+
T Consensus 86 ----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 86 ----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp ----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 233332 2346667777889999999999999998765221 1 13588999999998888777777777
Q ss_pred HHHHhh--------------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 150 LPILKE--------------------TLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 150 L~~l~e--------------------~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
|..++. -+.+++..+|..++.+++.++.+
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 755543 23456888999999999998754
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.66 E-value=0.0027 Score=54.96 Aligned_cols=164 Identities=12% Similarity=-0.023 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+++|. +++..+|.+|-..|.++... .+....|+.++. +.+..+|..|+-.|.+.....=.
T Consensus 175 i~~Lv~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 175 VPLFIQLLY---TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHHHHHHH---HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCCCC
Confidence 344555555 46889999999999888653 256666777764 36788999999999888764311
Q ss_pred CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhcCCccccchhhhHHHHHh-
Q psy9906 80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK- 154 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~- 154 (191)
.........+-..|+..|.+++..++..++.+++.++..... -...++++.|+.++.++++..+..++.+|..++
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 222222334445777778888999999999999999965311 011367899999999888777777777765554
Q ss_pred -------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 155 -------------------ETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 155 -------------------e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
+-+.++++.+|..|+.+++.|..|.
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 2345678999999999999998754
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.65 E-value=0.0023 Score=58.14 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=109.2
Q ss_pred HHHHHHHHHhc-CC--CHHHHHHHHHHHHHhhcC-C---C---hHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 11 IQILQLLKESQ-SP--DNLIQRAVQHKLEQLNTH-P---D---FNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 11 ~~l~~lL~~~~-s~--d~~~r~~AE~~L~~~~~~-~---~---~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
..++..+...+ ++ +..+|..|-..|..+... + + +..+++..+.. ..+.+..+|..|.-.|...+..+..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 44444444443 33 578999998888764421 0 0 11223333221 2345778999999999998887766
Q ss_pred CCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC---------------CC--CCC-------chHHHHHHHHh
Q psy9906 80 EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG---------------DL--KSW-------PELLPTLNDML 135 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e---------------~~--~~W-------pell~~L~~~l 135 (191)
.+.+.....+-..++..+.+.+..+|..+..++..+++.. .| ..+ ++++|.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 5544433244456666677788999999999998888752 11 111 45777788777
Q ss_pred hc-------CCccccchhhhHHHHH----------------hhhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 136 DS-------QDYNVCELLPVLLPIL----------------KETLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 136 ~~-------~~~~~~~~~l~~L~~l----------------~e~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
.. .++..+.++..+|..+ .+.+.+.+|.+|++++.++|.|++|..
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence 53 2345555555555433 334567899999999999999999875
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.65 E-value=0.001 Score=51.84 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhc--CCChHHHHHHH----HhhhCCCChhHHhHHHHHHHHhhhhhhcCC
Q psy9906 10 LIQILQLLKESQ--SPDNLIQRAVQHKLEQLNT--HPDFNNYLIFV----LTKLTSEDEPTRSLSGLILKNNVRARFYEF 81 (191)
Q Consensus 10 ~~~l~~lL~~~~--s~d~~~r~~AE~~L~~~~~--~~~~~~~L~~i----l~~~~~~~~~vRq~A~i~LKn~i~~~W~~i 81 (191)
+.++...|...+ +++..+|..|-..|..+.. .++|..+.-.+ +....+....+|..|...|+..+...
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---- 129 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---- 129 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----
Confidence 456666666655 6799999999999998775 24454443333 32234567899999999999987742
Q ss_pred ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 82 ~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~-----~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
+ . ..+=..++..+.+.++.+|..+...+..++..-. ...+|.++|.|...+.++++..+..+..++..+...
T Consensus 130 ~--~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 S--L-EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp C--H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred C--H-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 1 2355678888888899999999999999765532 245789999999999999999999999999777653
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.60 E-value=0.00049 Score=53.41 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=104.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH-H
Q psy9906 18 KESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV-S 86 (191)
Q Consensus 18 ~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~-k 86 (191)
.-..+++.++|..|-..|..+... .|....|..++. +.+..+|..|+-.|.|..... +.. .
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~-----~~~~~ 132 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGG-----NEQIQ 132 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSC-----HHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCC-----chHHH
Confidence 333466889999999999888752 346667777764 457899999999999885421 221 1
Q ss_pred HH----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhhhHHHHHhh---
Q psy9906 87 EF----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLPVLLPILKE--- 155 (191)
Q Consensus 87 ~~----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e--- 155 (191)
.. +=..|++.|.+++..++..++.++..++....... . .++++.|++++.++++..++.++.+|..++.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 22 22366667778899999999999999997541110 0 4678999999999888888888888866642
Q ss_pred -----------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906 156 -----------------TLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 156 -----------------~l~~~~~~~r~~~i~~~~ai~ 176 (191)
-+.+.+..+|..|..+++.+.
T Consensus 213 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 213 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 123445666666666665543
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.44 E-value=0.00042 Score=52.35 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=94.7
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-----KQECLSAIGDPSPLIRATVGILITTIA 116 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-----k~~ll~~l~~~~~~ir~~~~~~i~~Ia 116 (191)
+++...|..++. +.+..+|..|+-.|.+.... +++.+..+ -..+++.|.++++.+|..++.++..++
T Consensus 11 ~~~~~~l~~LL~---s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 11 GSELPQMVQQLN---SPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp --CHHHHHHHTT---CSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHhc---CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456778888874 56889999999999988642 23333322 346777788889999999999999998
Q ss_pred hhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHHHH
Q psy9906 117 SKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGILAL 172 (191)
Q Consensus 117 ~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~~~ 172 (191)
..+... ...+.+|.|+.++.++++..++.+..+|..++. -+.+.+..+|..++.++
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 654211 124688999999999988777777777765542 23456889999999999
Q ss_pred HHHhhh
Q psy9906 173 GAIAEV 178 (191)
Q Consensus 173 ~ai~~~ 178 (191)
+.+..+
T Consensus 163 ~~l~~~ 168 (210)
T 4db6_A 163 SNIASG 168 (210)
T ss_dssp HHHHTS
T ss_pred HHHHcC
Confidence 998876
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.22 E-value=0.011 Score=51.19 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
+-+++.+..|.|.+.+.+|...+..+.. +| |..+.|..++. .+.++.++.-|+-.|.|...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~--~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG--KTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC--CCCCHHHHHHHHHHHHHHhc
Confidence 5677788899999999999999987642 23 45777888875 34567888888888888653
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.21 E-value=0.018 Score=52.03 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=110.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcC--C-----ChHHHHHHHHhhhCCC-ChhHHhHHHHHHHHhhhhhhcC-C--Ch
Q psy9906 15 QLLKESQSPDNLIQRAVQHKLEQLNTH--P-----DFNNYLIFVLTKLTSE-DEPTRSLSGLILKNNVRARFYE-F--PP 83 (191)
Q Consensus 15 ~lL~~~~s~d~~~r~~AE~~L~~~~~~--~-----~~~~~L~~il~~~~~~-~~~vRq~A~i~LKn~i~~~W~~-i--~~ 83 (191)
.++....++++.+|+++-..|..+... | ++...|...+ ++. +..+|+.|...|+..... +.. . -.
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l---~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~ 174 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT---GAEQPENVKRASLLALGYMCES-ADPQSQALV 174 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT---STTSCHHHHHHHHHHHHHHHHT-SSTTSSTTG
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHc-CChhhhHHH
Confidence 344555677889999998888875431 3 3444444444 344 788999998888777653 332 1 23
Q ss_pred hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhC---C--CCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-
Q psy9906 84 GVSEFIKQECLSAIGDP--SPLIRATVGILITTIASKG---D--LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE- 155 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~--~~~ir~~~~~~i~~Ia~~e---~--~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e- 155 (191)
.....+-..++..+.++ +..+|..+..++..++..- . ...|+.+++.+.+.+.++++..+..++.+|..+.+
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 44566777778888876 7899999999998875432 1 12367799999998888888888888877744443
Q ss_pred -------------------hcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 156 -------------------TLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 156 -------------------~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
.+.+.+..+|..++..++.+++..
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 123456788999998888887753
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0097 Score=47.03 Aligned_cols=148 Identities=11% Similarity=0.153 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhc--C-CChH-HHHHH----HHhhhCCCChhHHhHHHHHHHHhhhhhh
Q psy9906 9 GLIQILQLLKESQ--SPDNLIQRAVQHKLEQLNT--H-PDFN-NYLIF----VLTKLTSEDEPTRSLSGLILKNNVRARF 78 (191)
Q Consensus 9 ~~~~l~~lL~~~~--s~d~~~r~~AE~~L~~~~~--~-~~~~-~~L~~----il~~~~~~~~~vRq~A~i~LKn~i~~~W 78 (191)
++.++++.|...+ .+|..+|..|-..|.++.. . ++|. .|... ++...++....||..|.-.|...+..-
T Consensus 57 ~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~- 135 (249)
T 2qk1_A 57 NYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY- 135 (249)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-
Confidence 3456666666665 6788899999999888765 4 5666 55443 333334556789988888888888753
Q ss_pred cCCChh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC--C----CC-chHHHHHHHHhhcCCccccchhhhHH
Q psy9906 79 YEFPPG-VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL--K----SW-PELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 79 ~~i~~~-~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~--~----~W-pell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
+..... .-+.+=+.|+..|.+.++.+|..+..+|+.++..-.. . .- |+++|.+...+.+++...+..+..++
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111111 1234666888999988999999999999999987642 2 34 89999999999999999999999999
Q ss_pred HHHhhhc
Q psy9906 151 PILKETL 157 (191)
Q Consensus 151 ~~l~e~l 157 (191)
..++..+
T Consensus 216 ~~i~~~v 222 (249)
T 2qk1_A 216 AILIKIF 222 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887654
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.12 E-value=0.021 Score=49.60 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh----
Q psy9906 13 ILQLLKESQSPDNLIQRAVQHKLEQLNT---HP--------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR---- 77 (191)
Q Consensus 13 l~~lL~~~~s~d~~~r~~AE~~L~~~~~---~~--------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~---- 77 (191)
+-+++.+..|+|.+.+.+|-..+..+-. .| |..+.|..++. .+.++.++.-|+-.|.|.....
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~--~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG--KTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 5667888899999999999999887542 22 45667778874 3556788888888888765410
Q ss_pred ----------------------------hc-----CCChhHHHHHHH-----HHHHhhCCC-----CHHHHHHHHHHHHH
Q psy9906 78 ----------------------------FY-----EFPPGVSEFIKQ-----ECLSAIGDP-----SPLIRATVGILITT 114 (191)
Q Consensus 78 ----------------------------W~-----~i~~~~k~~ik~-----~ll~~l~~~-----~~~ir~~~~~~i~~ 114 (191)
|- .-+++.|..+.+ .++..|..+ ...+.+.++.+++.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 00 012333333321 233333321 12334445555555
Q ss_pred HHhhC-CCCCC---chHHHHHHHHhhcCCccccchhhhHHHHHhh--------------------hcCCCcHHHHHHHHH
Q psy9906 115 IASKG-DLKSW---PELLPTLNDMLDSQDYNVCELLPVLLPILKE--------------------TLFHHDWEIKESGIL 170 (191)
Q Consensus 115 Ia~~e-~~~~W---pell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------------------~l~~~~~~~r~~~i~ 170 (191)
+++.. ....+ .+++|.|..++.++++.....+..+|.++.+ -+.+.+..++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 55544 22222 3467778888877777666666666655543 234567888888888
Q ss_pred HHHHHhhhhh
Q psy9906 171 ALGAIAEVNK 180 (191)
Q Consensus 171 ~~~ai~~~~~ 180 (191)
++|.|+.|.+
T Consensus 316 aL~nl~~~~~ 325 (529)
T 3tpo_A 316 AIGNIVTGTD 325 (529)
T ss_dssp HHHHHTTSCH
T ss_pred HHHHHHccch
Confidence 8888876543
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.91 E-value=0.01 Score=53.07 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=81.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHh-hhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHH
Q psy9906 16 LLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLT-KLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQEC 93 (191)
Q Consensus 16 lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~-~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~l 93 (191)
++....|+|-..||-+.-.+..+.+ +|+........+. ..++.++.+|-+|.-.+=+.. .++.-+.+-..+
T Consensus 79 vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~~v 151 (621)
T 2vgl_A 79 AVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAGEI 151 (621)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTTHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHHHH
Confidence 3344445566666666666665544 2333322222221 123445555555555544332 245556677777
Q ss_pred HHhh--CCCCHHHHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 94 LSAI--GDPSPLIRATVGILITTIASKGDLKSWP--ELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 94 l~~l--~~~~~~ir~~~~~~i~~Ia~~e~~~~Wp--ell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
.+++ .++++.||+.++.++..+.+.++ +.=+ ++++.+..++.++|+....+++.++..+++
T Consensus 152 ~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 152 PKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 8888 78999999999999999999873 2223 667777778877788777777777765554
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.78 E-value=0.0092 Score=53.16 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=73.7
Q ss_pred cCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHH-hhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC
Q psy9906 21 QSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVL-TKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG 98 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il-~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~ 98 (191)
.++|-..||-+.-.+..+.. +|+........+ ...++.++.+|-+|.-.|=+.. +++.-+.+-..+..+|.
T Consensus 80 ~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 80 ASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK 152 (618)
T ss_dssp HSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc
Confidence 36677777777777776654 344322222222 2234556667766666554443 23333455566667777
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHh
Q psy9906 99 DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK 154 (191)
Q Consensus 99 ~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~ 154 (191)
++++.||++++.++..|.+.. |+.=+++++.+..++.+.|+..+.+++.+|..++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 788888888888888888765 2222355566666666666655555555554443
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.77 E-value=0.018 Score=46.84 Aligned_cols=132 Identities=10% Similarity=0.084 Sum_probs=95.5
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 19 ESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 19 ~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
-..++++++|.+|=..|-.+... .|....|+.++.. +.+..+|.-|+-.|-|.+..+- +..+..
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~~~----~~~~~~ 163 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVREQE----AGLLQF 163 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCH----HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCc----HHHHHH
Confidence 34578999999999888876542 2667778888852 3467899999888888775321 111122
Q ss_pred HH----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcCCccccchhhhHHHHHhhh
Q psy9906 89 IK----QECLSAIGDPSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 89 ik----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
+. ..|+..|.+++..++..++.+++.++........ .++++.|+.++.+++...++.++.+|..+...
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 22 2566667788999999999999999987522111 36889999999999988899999988666543
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.72 E-value=0.014 Score=53.44 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+.+|. ++|..+|..|-..|..+.. .++....|..++. .+.+..+|..|+-.|++... .
T Consensus 152 ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~--~~~d~~vr~~Aa~aL~~Ls~-~-- 223 (780)
T 2z6g_A 152 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSH-H-- 223 (780)
T ss_dssp HHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHT-S--
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHc--CCCCHHHHHHHHHHHHHHhC-C--
Confidence 344555554 6789999999999988765 2467778888875 23578899999999998433 2
Q ss_pred CCChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 80 EFPPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 80 ~i~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
++.+.. +=..|++.|.++++.++..++.++..|+....... =.+.++.|+.++.+++....+.++.+|
T Consensus 224 ---~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 224 ---REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ---chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111222 22366777778889999999999999998753211 136889999999987766666666565
Q ss_pred HHHh
Q psy9906 151 PILK 154 (191)
Q Consensus 151 ~~l~ 154 (191)
..+.
T Consensus 301 ~~La 304 (780)
T 2z6g_A 301 QILA 304 (780)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 52
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.52 E-value=0.0048 Score=43.45 Aligned_cols=112 Identities=11% Similarity=-0.034 Sum_probs=76.0
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
|.+...+...+. +.+..+|..|+..|.+. .... + ..|++.|.++++.+|..++.+++.+..
T Consensus 11 ~~~~~~l~~~L~---~~~~~vR~~A~~~L~~~--------~~~~---~-~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 11 SSGLVPRGSHMA---DENKWVRRDVSTALSRM--------GDEA---F-EPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ----------CC---SSCCCSSSSCCSSTTSC--------SSTT---H-HHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred cccHHHHHHHhc---CCCHHHHHHHHHHHHHh--------CchH---H-HHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 556666666663 45677888887666432 1111 3 678888999999999999888887752
Q ss_pred CCCchHHHHHHHHhhcCCccccchhhhHHHHHh---------hhcCCCcHHHHHHHHHHHHHH
Q psy9906 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILK---------ETLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 122 ~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~---------e~l~~~~~~~r~~~i~~~~ai 175 (191)
++.++.|...+.++++..+..+...|..+. +-+.+.+..+|..++.+++.|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 578899999998888888888887775554 345677899999998888754
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.46 E-value=0.058 Score=45.93 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+.+|. ++|..+|..|-..|..+... ++....|..++. .+.+..+|..|+-.|++....
T Consensus 19 i~~Lv~lL~---~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~--~~~~~~~~~~a~~~L~~ls~~--- 90 (529)
T 1jdh_A 19 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHH--- 90 (529)
T ss_dssp HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHh--cCCCHHHHHHHHHHHHHHHcC---
Confidence 344444443 67999999999999887642 345666777774 244788999999999885432
Q ss_pred CCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 80 EFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 80 ~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
++.+..+. ..+++.|.++++.++..++.++..++..+.... =.+.+|.|++++.++++.....+..+|
T Consensus 91 ---~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 ---REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ---chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 23333332 266677778889999999999999998853211 146889999999988766655555555
Q ss_pred HHH
Q psy9906 151 PIL 153 (191)
Q Consensus 151 ~~l 153 (191)
..+
T Consensus 168 ~~l 170 (529)
T 1jdh_A 168 QIL 170 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.45 E-value=0.031 Score=49.72 Aligned_cols=114 Identities=8% Similarity=0.073 Sum_probs=86.4
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhh
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLD 136 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~ 136 (191)
+.+...|+++-+++.++... .++....+-+.+.+.|.++++.+|..+..+++.|+..+ --+++++.+..++.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MCRDLAGEVEKLLK 152 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHc
Confidence 45677788888777766543 35555567778888899999999988888888887433 23567999999999
Q ss_pred cCCccccchhhhHHHHHhh---------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 137 SQDYNVCELLPVLLPILKE---------------TLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 137 ~~~~~~~~~~l~~L~~l~e---------------~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
++++..+..|..++..+.+ -+.+.+..++.+|+.+++.|.+.
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 9999888888888855542 23356789999999999988754
No 55
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.37 E-value=0.085 Score=49.41 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=64.8
Q ss_pred HHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh-hcCCccccchhhhHHHHHhh---------
Q psy9906 87 EFIKQECLSA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML-DSQDYNVCELLPVLLPILKE--------- 155 (191)
Q Consensus 87 ~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l-~~~~~~~~~~~l~~L~~l~e--------- 155 (191)
..|+ .||.. ..+.+..+|+.+...++.|+-.+ |+..+.+++.+ ++.|+..+.++...|..++-
T Consensus 577 ~aIq-~LL~~~~~d~~d~VRraAViaLGlI~~g~-----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 577 SAVK-RLLHVAVSDSNDDVRRAAVIALGFVLLRD-----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp HHHH-HHHHHHHHCSCHHHHHHHHHHHHHHTSSS-----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHH-HHHHHhccCCcHHHHHHHHHHHHhhccCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 3444 34443 44678889998888888887665 46777777754 45688888888888877752
Q ss_pred ----hcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 156 ----TLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 156 ----~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
-..+++..+|..|+.++|-|.-|--.
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 23467899999999999999877433
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.25 E-value=0.45 Score=40.28 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=97.7
Q ss_pred cCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
.+++..+|..+-..|..+.. ..+....|..++.. ..+...+..++-.|+|.-. .++.+..+.
T Consensus 153 ~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~------~~~~~~~~~ 224 (529)
T 1jdh_A 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVLKVLSV------CSSNKPAIV 224 (529)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh--CChHHHHHHHHHHHHHHhc------CcccHHHHH
Confidence 34677777777666654432 13567777777752 3344455555556666542 233344332
Q ss_pred -H----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh--------
Q psy9906 91 -Q----ECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET-------- 156 (191)
Q Consensus 91 -~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~-------- 156 (191)
. .+++.+.+++..++..++.++..+++...+ ..-.+++|.|++++.++++..++.+..+|..++..
T Consensus 225 ~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 225 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2 344455567889999999999999987632 22357999999999988888777777777666431
Q ss_pred ------------cC--CCcHHHHHHHHHHHHHHhhh
Q psy9906 157 ------------LF--HHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 157 ------------l~--~~~~~~r~~~i~~~~ai~~~ 178 (191)
+. +.++.+++.++.+++.+..+
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 11 12378999999999988764
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.22 E-value=0.087 Score=45.65 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=106.2
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 11 IQILQLLKES-QSPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 11 ~~l~~lL~~~-~s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
..++..|... .++|.+++..|-..|..+.. ..|....|..++. +.+..++..|+-.|.|....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~--- 323 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTG--- 323 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTS---
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHcc---
Confidence 4444444443 46788899888877766553 2456667777764 56788999999899887642
Q ss_pred CCChhHHHHH-HH----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcCCccccchhhhHH
Q psy9906 80 EFPPGVSEFI-KQ----ECLSAIGDPSPLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 80 ~i~~~~k~~i-k~----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
+++.+..+ .. .++..|.++++.+|..++.+++.|+........ .+++|.|+.++.+++...+..+..+|
T Consensus 324 --~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 324 --TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp --CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred --chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23333322 22 355566778899999999999999876421110 25889999999988876665555555
Q ss_pred HHH---------------------hhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 151 PIL---------------------KETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 151 ~~l---------------------~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
.-+ ++-+...|..++..++.++..|...
T Consensus 402 ~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 402 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 322 2234456888888888888777653
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.14 E-value=0.17 Score=43.59 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=104.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhC--CCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 17 LKESQSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLT--SEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 17 L~~~~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~--~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
+.-..++|..+|.+|-..|.++..+ .|....|+.++.... .....+...++-.|.|.....-......
T Consensus 149 v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 228 (510)
T 3ul1_B 149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228 (510)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence 3334578999999999988887642 244555666664210 0122333444555555544321222222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHhhcCCccccchhhhHHHHHhh-----
Q psy9906 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK----SWPELLPTLNDMLDSQDYNVCELLPVLLPILKE----- 155 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~----~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e----- 155 (191)
....+-..|+..+.+++..++..++.+++.++...... .-.++++.|++++.+++...+..++.+|..+..
T Consensus 229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence 22344456777888899999999999999998654110 124578999999999888888888887755531
Q ss_pred ---------------hcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 156 ---------------TLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 156 ---------------~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
-+.+++..+|..+..+++.|..|..
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence 1234578899999999998876543
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.08 E-value=0.00083 Score=47.53 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=79.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCC
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDP 100 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~ 100 (191)
.++|..+|..|-..|..+.. +. ...|...+. +.+..+|..|+..|-+.-. + ..-..|+..+.++
T Consensus 22 ~~~~~~vR~~A~~~L~~~~~-~~-~~~L~~~L~---d~~~~vR~~A~~aL~~~~~-------~----~a~~~L~~~L~d~ 85 (131)
T 1te4_A 22 ADENKWVRRDVSTALSRMGD-EA-FEPLLESLS---NEDWRIRGAAAWIIGNFQD-------E----RAVEPLIKLLEDD 85 (131)
T ss_dssp CSSCCCSSSSCCSSTTSCSS-TT-HHHHHHGGG---CSCHHHHHHHHHHHGGGCS-------H----HHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCc-hH-HHHHHHHHc---CCCHHHHHHHHHHHHhcCC-------H----HHHHHHHHHHcCC
Confidence 45788899888888876654 34 466766663 4688999999988765421 1 2345667777788
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHH
Q psy9906 101 SPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLP 151 (191)
Q Consensus 101 ~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~ 151 (191)
++.+|..++.+++.+. -++.++.|...++++++..+..+...|.
T Consensus 86 ~~~VR~~A~~aL~~~~-------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 86 SGFVRSGAARSLEQIG-------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp CTHHHHHHHHHHHHHC-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999886 2678899999998877777776666553
No 60
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.02 E-value=0.054 Score=48.07 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..|+.+|. ++|..+|..|-..|.++.... +....|...+. .+.+..+|..|+-.|++....
T Consensus 16 i~~Lv~lL~---~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~--~~~~~~~~~~A~~~L~~Ls~~--- 87 (644)
T 2z6h_A 16 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHH--- 87 (644)
T ss_dssp HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcC---
Confidence 445555554 679999999999999887643 34555666664 345788999999888865432
Q ss_pred CCChhHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 80 EFPPGVSEFI-----KQECLSAIGDPSPLIRATVGILITTIASKGDLKS----WPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 80 ~i~~~~k~~i-----k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~----Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
++.+..+ -..+++.|.++++.++..++.++..++..+.+.. =.+.+|.|+.++.++++.....+..+|
T Consensus 88 ---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 88 ---REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp ---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ---hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 1233322 2356777778889999999999999998863211 146899999999988765555555555
Q ss_pred HHHh
Q psy9906 151 PILK 154 (191)
Q Consensus 151 ~~l~ 154 (191)
..+.
T Consensus 165 ~~La 168 (644)
T 2z6h_A 165 QILA 168 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.76 E-value=0.53 Score=42.93 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H
Q psy9906 22 SPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K 90 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k 90 (191)
+++..++..|-..|..+.. ..+....|..++. ...+...+..|+-.|++.-. .++.+..+ +
T Consensus 287 ~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~--~~~~~~~~~~a~~aL~~Ls~------~~~~~~~i~~ 358 (780)
T 2z6g_A 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSV------CSSNKPAIVE 358 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHT------STTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhhc------ChHHHHHHHH
Confidence 4577777777666654432 2466777777774 23344455555566666543 12333333 3
Q ss_pred ----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhhh---------
Q psy9906 91 ----QECLSAIGDPSPLIRATVGILITTIASKGDL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKET--------- 156 (191)
Q Consensus 91 ----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~--------- 156 (191)
..|+..+.+.+..++..++.++..++....+ ..-.++++.|++++.+.++..++.+..+|..+...
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455566667888888999999999987632 22367999999999988888888888888666531
Q ss_pred -----------cCC-CcH-HHHHHHHHHHHHHhhh
Q psy9906 157 -----------LFH-HDW-EIKESGILALGAIAEV 178 (191)
Q Consensus 157 -----------l~~-~~~-~~r~~~i~~~~ai~~~ 178 (191)
+.+ .++ .+|+.++.++|.|..+
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 111 233 7899999999988753
No 62
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.72 E-value=0.15 Score=42.58 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
.-+..++....++|-..||-..-.+..+.+.++ .....-.+....++.++-+|-.|.=.|=+. .+++.-+.+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I-------~~~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQI-------TDSTMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH-------CCTTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcC-------CCHHHHHHH
Confidence 334555667788999999999999999987655 332222333233456777777766555433 334555666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 90 KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 90 k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
-..+-++|.+.++.||+.++-++..+....+. -=..+++.+.+++.+.|+-....++.+|..+++
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 67788899999999999999999988766521 112345666677777676555555655555554
No 63
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.60 E-value=0.67 Score=37.01 Aligned_cols=169 Identities=16% Similarity=0.076 Sum_probs=109.2
Q ss_pred CCChHHHHHHHHHHHH---------hcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhh-----hCCCChhHHhHHHH
Q psy9906 4 QPQEEGLIQILQLLKE---------SQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTK-----LTSEDEPTRSLSGL 68 (191)
Q Consensus 4 ~p~~~~~~~l~~lL~~---------~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~-----~~~~~~~vRq~A~i 68 (191)
+|.++.+++|...+.. .+++|-..|-+|-+.|.+.-. .|......++++.. .-+.+..+=+.+.-
T Consensus 30 ~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~ 109 (266)
T 2of3_A 30 APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE 109 (266)
T ss_dssp SCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3555556555554443 356788888888888875443 45443333333211 11335666666666
Q ss_pred HHHHhhhhh---hcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccch
Q psy9906 69 ILKNNVRAR---FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCEL 145 (191)
Q Consensus 69 ~LKn~i~~~---W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~ 145 (191)
+|...+..- =..+.+.+-..+=..|++-+.++...+|..+-.++..+...-+|. -+++.+.+.+.+.|+..++.
T Consensus 110 ~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 110 LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHccCCHHHHHH
Confidence 777766531 123667666667788888899999999999999998888764322 26677777777777766666
Q ss_pred hhhHH------------------HHHhhhcCCCcHHHHHHHHHHHHHH
Q psy9906 146 LPVLL------------------PILKETLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 146 ~l~~L------------------~~l~e~l~~~~~~~r~~~i~~~~ai 175 (191)
.+.++ +.+...+-++|-.+|.+|+.++..+
T Consensus 187 ~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 187 CLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 65544 4445555677889999998776653
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.27 E-value=1.3 Score=39.14 Aligned_cols=148 Identities=19% Similarity=0.125 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 22 SPDNLIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
+++...+..|-..|..+.. ..+....|..++. ......++..++-.|+|.-. .++.|..+.+
T Consensus 151 ~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~~a~~~L~nLs~------~~~~~~~l~~ 222 (644)
T 2z6h_A 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSV------CSSNKPAIVE 222 (644)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTT------CTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH--cCChHHHHHHHHHHHHHHhc------CcccHHHHHH
Confidence 4456666666556665542 1356677777775 23345666667777776642 2344444332
Q ss_pred -----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHhhcCCccccchhhhHHHHHhhh---------
Q psy9906 92 -----ECLSAIGDPSPLIRATVGILITTIASKGDLK-SWPELLPTLNDMLDSQDYNVCELLPVLLPILKET--------- 156 (191)
Q Consensus 92 -----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~-~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~--------- 156 (191)
.+++.+.+.+..++..++.++..+++..... .-.++++.|++++.++++..++.+..+|..++..
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~ 302 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445556678899999999999999876332 2347999999999988888888888887666531
Q ss_pred -----------cCC-Cc-HHHHHHHHHHHHHHhh
Q psy9906 157 -----------LFH-HD-WEIKESGILALGAIAE 177 (191)
Q Consensus 157 -----------l~~-~~-~~~r~~~i~~~~ai~~ 177 (191)
+.+ .+ ..+++.++.+++.|..
T Consensus 303 ~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 111 22 7899999999998864
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.77 E-value=0.93 Score=38.48 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-C---------ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-P---------DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY 79 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~---------~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~ 79 (191)
+..++++|. ++|.+.+..|-..|..+... + |....|..++. +.+..++..|+-.|+|....
T Consensus 4 l~~lv~~L~---s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~~~~~A~~aL~nLa~~--- 74 (457)
T 1xm9_A 4 IPKAVQYLS---SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SPNQNVQQAAAGALRNLVFR--- 74 (457)
T ss_dssp HHHHHHHHH---SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcC---
Confidence 455666664 56778999999999887642 2 34556666663 46788999999999988762
Q ss_pred CCChhHHHHHHH-----HHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCC--CchHHHHHHHHh
Q psy9906 80 EFPPGVSEFIKQ-----ECLSAIG-DPSPLIRATVGILITTIASKGDLKS--WPELLPTLNDML 135 (191)
Q Consensus 80 ~i~~~~k~~ik~-----~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~--Wpell~~L~~~l 135 (191)
+++.|..|.+ .+++.|. +++..++..++.++..++..+.... -.+.+|.|++++
T Consensus 75 --~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 75 --STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 3677777754 6777888 6789999999999999998852210 116788888888
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.70 E-value=0.55 Score=41.76 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=80.4
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHh
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML 135 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l 135 (191)
++.+...|+++-+++.+.... .++.-..+=+.+.+-|.++++.+|..+-.+++.|.. |+--+.+.+.+.+.+
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~-----~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l 155 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNS-----NSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKIL 155 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHH
Confidence 355677777777777776643 244444555677778889999999877777777754 334567888888998
Q ss_pred --hcCCccccchhhhHHHHHhh-----------------hcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 136 --DSQDYNVCELLPVLLPILKE-----------------TLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 136 --~~~~~~~~~~~l~~L~~l~e-----------------~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
.+.++..+..|..++..+.+ -+.+.+..++.+|+.+++.|...
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 77777777777777644433 23345788999998888888763
No 67
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.98 E-value=2.8 Score=38.64 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHH-------HHH
Q psy9906 28 QRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSE-------FIK 90 (191)
Q Consensus 28 r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~-------~ik 90 (191)
+..|=..|.++... .|.+..|..++. +.+..+|..|+-.+.|..... +.+. .++
T Consensus 598 ~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~Vq~~A~~~L~NLa~~~------~~~~~~v~~~g~l~ 668 (810)
T 3now_A 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYLTRAAAQCLCNLVMSE------DVIKMFEGNNDRVK 668 (810)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTHHHHHHHHHHHHTTSH------HHHHHHHSSSSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCh------HHHHHHHhccCcHH
Confidence 34555555555443 366777777775 346779999999999987621 1111 222
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhC------CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------
Q psy9906 91 QECLSAIGDPSPLIRATVGILITTIASKG------DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE--------- 155 (191)
Q Consensus 91 ~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e------~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e--------- 155 (191)
.|+..+.+++..+|..++.+++.|+... -.+. ...++.|++++.+++...++.+..++.-+..
T Consensus 669 -~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l 746 (810)
T 3now_A 669 -FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL 746 (810)
T ss_dssp -HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5666777788999999999999999832 1232 5788999999999988887777777633321
Q ss_pred ----------hc-CCC---cHHHHHHHHHHHHHHhhh
Q psy9906 156 ----------TL-FHH---DWEIKESGILALGAIAEV 178 (191)
Q Consensus 156 ----------~l-~~~---~~~~r~~~i~~~~ai~~~ 178 (191)
.+ ..+ +..+.+.|+.++..|++.
T Consensus 747 ~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 747 FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 11 122 467777787777776653
No 68
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.82 E-value=0.69 Score=42.66 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=84.5
Q ss_pred ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-H----HHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9906 43 DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI-K----QECLSAIGDPSPLIRATVGILITTIAS 117 (191)
Q Consensus 43 ~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i-k----~~ll~~l~~~~~~ir~~~~~~i~~Ia~ 117 (191)
|....|..++. +.++.+|..|+-.|.|.... ++.|..| + ..|+..|.+.++..+..++.+++.++.
T Consensus 495 GaVp~LV~LL~---s~s~~vqe~Aa~aL~NLA~d------~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 495 GITTALCALAK---TESHNSQELIARVLNAVCGL------KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp THHHHHHHHHT---CCCHHHHHHHHHHHHHHHTS------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 55666777763 56788999999999888531 3344432 2 245566667888999999999999987
Q ss_pred hCCC-CCC-----chHHHHHHHHhhcCCc-cccchhhhHHHHH--------------------hhhcCCCcHHHHHHHHH
Q psy9906 118 KGDL-KSW-----PELLPTLNDMLDSQDY-NVCELLPVLLPIL--------------------KETLFHHDWEIKESGIL 170 (191)
Q Consensus 118 ~e~~-~~W-----pell~~L~~~l~~~~~-~~~~~~l~~L~~l--------------------~e~l~~~~~~~r~~~i~ 170 (191)
..-| ..+ .+.+|.|++++.+++. ....-++.+|..+ .+-+.+.+..+|.+|..
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 6422 112 2478889998875422 2222334444333 22345667889999999
Q ss_pred HHHHHhhhhh
Q psy9906 171 ALGAIAEVNK 180 (191)
Q Consensus 171 ~~~ai~~~~~ 180 (191)
+++.|+.+.+
T Consensus 646 ~L~NLa~~~~ 655 (810)
T 3now_A 646 CLCNLVMSED 655 (810)
T ss_dssp HHHHHTTSHH
T ss_pred HHHHHhCChH
Confidence 9999887654
No 69
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.65 E-value=0.42 Score=42.66 Aligned_cols=115 Identities=20% Similarity=0.066 Sum_probs=80.0
Q ss_pred CCChhHHhHHHHHHHHhhhhhh------cCCChhHHHHHHHHHHHhhC---C-----CCHHHHHHHHHHHHHHHhhCCCC
Q psy9906 57 SEDEPTRSLSGLILKNNVRARF------YEFPPGVSEFIKQECLSAIG---D-----PSPLIRATVGILITTIASKGDLK 122 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W------~~i~~~~k~~ik~~ll~~l~---~-----~~~~ir~~~~~~i~~Ia~~e~~~ 122 (191)
+..=++|+-|++-||-.++.+= ..... --.+|=-.+-+|- + ....||..+|++++.+ .+-++.
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh
Confidence 3455899999999999998641 11222 2244433333442 1 3579999999999999 776555
Q ss_pred CCchHHHHHHHHhhcCCccccchhhhHHHHHhhhc--------------CCCcHHHHHHHHHHHHHHh
Q psy9906 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL--------------FHHDWEIKESGILALGAIA 176 (191)
Q Consensus 123 ~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l--------------~~~~~~~r~~~i~~~~ai~ 176 (191)
-..+..++..+..+.|..++|+|.-|+|+.+-+ .+.|-++|-.|..++..|+
T Consensus 262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 355666665557778999999999999995532 4456778887777777776
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=93.64 E-value=0.91 Score=35.89 Aligned_cols=134 Identities=14% Similarity=0.051 Sum_probs=76.3
Q ss_pred CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC-
Q psy9906 42 PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD- 120 (191)
Q Consensus 42 ~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~- 120 (191)
.+....|..++ +..+..++.-|.+.+++.++..-..+....-+.+=..+++.+.+.+..+.-.+..|+..+....+
T Consensus 32 e~~l~~L~~LL---~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELA---GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHT---TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHH---hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 45677777777 35678889889999999988643223233333344445555555666666666666666666553
Q ss_pred -CCCCchHHHHHHHHhhcCCccccchhhhHHH-------------HHhhhcCCCcHHHHHHHHHHHHHHhhh
Q psy9906 121 -LKSWPELLPTLNDMLDSQDYNVCELLPVLLP-------------ILKETLFHHDWEIKESGILALGAIAEV 178 (191)
Q Consensus 121 -~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~-------------~l~e~l~~~~~~~r~~~i~~~~ai~~~ 178 (191)
++.+--+...+.+.+.+++.-..+-+...+. ++.+=+.+.+..++.+|+.++..|+..
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 3445555666666666555433222222222 222222344666666666666666553
No 71
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=92.68 E-value=2.7 Score=34.67 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-----------CCChHHHHHHHHhhhCCC--ChhHHhHHHHHHHHhhhh
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNT-----------HPDFNNYLIFVLTKLTSE--DEPTRSLSGLILKNNVRA 76 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-----------~~~~~~~L~~il~~~~~~--~~~vRq~A~i~LKn~i~~ 76 (191)
+..|+++|.. +++.+.++.|-..|.++.. ..|....|..++.. .+. ...++.-|+-.|+|.-..
T Consensus 172 Ip~Lv~lL~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~-~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 172 VKALMECALE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc-CCCcccHHHHHHHHHHHHHHHhh
Confidence 3345554432 3567788777766665543 34666777777742 211 124777777777775431
Q ss_pred hhcCCChhHHHHHH-----HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhh
Q psy9906 77 RFYEFPPGVSEFIK-----QECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLP 147 (191)
Q Consensus 77 ~W~~i~~~~k~~ik-----~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l 147 (191)
. .-.++.|..++ ..|++.|.+.+..++..++.++..++..+.... . -+.+|.|++++.+++...++.+.
T Consensus 249 -~-a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 249 -I-ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp -H-TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred -c-cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 1 12355566554 356777778889999999999999985431111 0 24677788888777777777777
Q ss_pred hHHHHHhhh
Q psy9906 148 VLLPILKET 156 (191)
Q Consensus 148 ~~L~~l~e~ 156 (191)
.+|.-+...
T Consensus 327 ~aL~nL~~~ 335 (354)
T 3nmw_A 327 AALRNLMAN 335 (354)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 777666653
No 72
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.71 E-value=3.9 Score=31.96 Aligned_cols=106 Identities=9% Similarity=-0.050 Sum_probs=70.7
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC-CChh-HHHHHHH
Q psy9906 16 LLKE-SQSPDNLIQRAVQHKLEQLNTHPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE-FPPG-VSEFIKQ 91 (191)
Q Consensus 16 lL~~-~~s~d~~~r~~AE~~L~~~~~~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~-i~~~-~k~~ik~ 91 (191)
+++. ..++...+|..|-+.+..+-..... ...+-.++...++-++.+|..+...|.+.+..+-.. ++.. .-..+-.
T Consensus 107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~ 186 (278)
T 4ffb_C 107 LVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLK 186 (278)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGG
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHH
Confidence 4444 4567888999988888876543332 222333333235668899999999999999875332 3321 2223444
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
.+..++.++++.||..+..++..+.+.-++
T Consensus 187 ~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 187 HVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 677778899999999999999999887653
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=91.54 E-value=3.7 Score=31.48 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=87.6
Q ss_pred HhcCCC-HHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCC---ChhHHHHHHH
Q psy9906 19 ESQSPD-NLIQRAVQHKLEQLNT-HPDF-NNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEF---PPGVSEFIKQ 91 (191)
Q Consensus 19 ~~~s~d-~~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i---~~~~k~~ik~ 91 (191)
..++-| =.+||.|-..+....+ .|+. .+.+-.++.- ..+...+ |-.-|.+-...+ .|+.-..+-.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIp--------ltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIP--------LTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHH--------HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 334444 2478888888776655 4653 3333333321 1233322 222232222221 2332222223
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------------h
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------------T 156 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------~ 156 (191)
.+..-+.-.++.+|-..+.++..|++.. |.--+..+..+..+++++|...+-.++..+.-+-+ =
T Consensus 111 ~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aL 189 (253)
T 2db0_A 111 VLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL 189 (253)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGG
T ss_pred HHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHH
Confidence 3334444579999999999999999986 33445566667788887775555555554433322 2
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 157 LFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 157 l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
+.+.|--+|-+++..++-+++-..
T Consensus 190 L~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 190 LHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HcCcchhhhHHHHHHHHHHHHcCH
Confidence 345677899999999998887544
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.41 E-value=5.2 Score=31.17 Aligned_cols=163 Identities=7% Similarity=-0.037 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCC----------hH---HHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906 8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT-HPD----------FN---NYLIFVLTKLTSEDEPTRSLSGLILKNN 73 (191)
Q Consensus 8 ~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~----------~~---~~L~~il~~~~~~~~~vRq~A~i~LKn~ 73 (191)
+++..|- +-+...|.+=..|++|-+.|...-. .+. |. ..+-..+ .+.+..+.+.|.-.+..+
T Consensus 7 ~d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l---~DsN~~v~~~al~~l~~~ 82 (278)
T 4ffb_C 7 VDYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI---TDSNVVAQEQAIVALNSL 82 (278)
T ss_dssp ----CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT---TCSSHHHHHHHHHHHHHH
T ss_pred hhhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHH
Confidence 3444433 3456677788899999998876432 111 21 1222232 345677888888788777
Q ss_pred hhhhhcC--CCh---hHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhh
Q psy9906 74 VRARFYE--FPP---GVSEFIKQECLS-AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLP 147 (191)
Q Consensus 74 i~~~W~~--i~~---~~k~~ik~~ll~-~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l 147 (191)
+...=.. ... ..-..+=..|++ ++.++.+.+|.....++..++....+. ..+++.+...+.+.++..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 83 IDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp HTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HHHHHHHGGGGGCSCHHHHHHHH
T ss_pred HHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhccCHHHHHHHH
Confidence 6532111 001 111222334444 466788899988888888888766432 35677788888888887766666
Q ss_pred hHHHH-Hhh---------------------hcCCCcHHHHHHHHHHHHHHh
Q psy9906 148 VLLPI-LKE---------------------TLFHHDWEIKESGILALGAIA 176 (191)
Q Consensus 148 ~~L~~-l~e---------------------~l~~~~~~~r~~~i~~~~ai~ 176 (191)
.+|.. +.+ -+-+.+..+|.+|+.+++.+-
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 66532 222 234678999999999887753
No 75
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.56 E-value=2.4 Score=33.82 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcC--CC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH-
Q psy9906 14 LQLLKESQSPDNLIQRAVQHKLEQLNTH--PD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI- 89 (191)
Q Consensus 14 ~~lL~~~~s~d~~~r~~AE~~L~~~~~~--~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i- 89 (191)
-.+++.+..+...+|..+.+-+..+..- |. ...+++.-+ ++-+.-+|.-+...+-..|..+ .+++ .+ .+
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~---ksKN~R~R~e~l~~l~~li~~~--G~~~-~~-~l~ 207 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL---KSKNARQRSECLLVIEYYITNA--GISP-LK-SLS 207 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG---GCSCHHHHHHHHHHHHHHHHHH--CSGG-GG-GGC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHhc--CCCc-cc-ccc
Confidence 3445555556666666666666655542 22 233333322 3344556666666666666553 1111 11 22
Q ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC
Q psy9906 90 -KQECLSAIGDPSPLIRATVGILITTIASKGDLKSW 124 (191)
Q Consensus 90 -k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W 124 (191)
...+...+.+++..||+++-.|++.+.++.+..-|
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 13455556666667777666666666666654444
No 76
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=88.88 E-value=4.4 Score=36.30 Aligned_cols=143 Identities=14% Similarity=0.049 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHH
Q psy9906 25 NLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLI 104 (191)
Q Consensus 25 ~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~i 104 (191)
..+|..|-|.|-.+..-|+....|..++.......=++|+.+.+-||-. ..+-.+ ...+-+.++.+|.+++.-|
T Consensus 242 APVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DDDV 315 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDEDI 315 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSHHH
T ss_pred eehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCcccHH
Confidence 3578888888877733344334444444222344568999999999866 221112 6778889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc--cccchhhhHHHHHhh-----------------hcCCCcHHHH
Q psy9906 105 RATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY--NVCELLPVLLPILKE-----------------TLFHHDWEIK 165 (191)
Q Consensus 105 r~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~--~~~~~~l~~L~~l~e-----------------~l~~~~~~~r 165 (191)
|..+|.++.-|+ .|+.-+.++..+.+.+.+.|. ...-..|.+|..++. -+.++--.+|
T Consensus 316 RAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 316 KLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHH
T ss_pred HHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHH
Confidence 999999999999 567788899999999987643 123445556666554 1234557899
Q ss_pred HHHHHHHHHHh
Q psy9906 166 ESGILALGAIA 176 (191)
Q Consensus 166 ~~~i~~~~ai~ 176 (191)
.+.+.++.++.
T Consensus 393 ~AVL~TL~tfL 403 (800)
T 3oc3_A 393 TSILNMVKNLS 403 (800)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHHHHH
Confidence 99988877655
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=88.79 E-value=9.1 Score=32.22 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---------------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNT---------------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNN 73 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~---------------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~ 73 (191)
.+..++.+|... .++.++..|--.|.++.. ..+....|..++. +.+..+|.-|+-.|+|.
T Consensus 284 ~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~---~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 284 AIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ---SGNSDVVRSGASLLSNM 358 (457)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT---CSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh---CCCHhHHHHHHHHHHHH
Confidence 455667777664 456777777777666542 1344556677763 46788999999999998
Q ss_pred hhhhhcCCChhHHHHHHHH----HHHhhCCCC------HHHHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHhhcC-
Q psy9906 74 VRARFYEFPPGVSEFIKQE----CLSAIGDPS------PLIRATVGILITTIASKGDLKSW----PELLPTLNDMLDSQ- 138 (191)
Q Consensus 74 i~~~W~~i~~~~k~~ik~~----ll~~l~~~~------~~ir~~~~~~i~~Ia~~e~~~~W----pell~~L~~~l~~~- 138 (191)
-. +++.+..|... |++.|..++ ..+...+..++..|...+....+ .+.++.|.+++.++
T Consensus 359 s~------~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~ 432 (457)
T 1xm9_A 359 SR------HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSA 432 (457)
T ss_dssp HT------SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTT
T ss_pred hc------CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 65 24555555554 444455432 35666778888888876632111 36778888888777
Q ss_pred CccccchhhhHHHHH
Q psy9906 139 DYNVCELLPVLLPIL 153 (191)
Q Consensus 139 ~~~~~~~~l~~L~~l 153 (191)
+...+..|..+|..+
T Consensus 433 ~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 433 SPKAAEAARLLLSDM 447 (457)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHH
Confidence 666666666666433
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=88.15 E-value=11 Score=32.06 Aligned_cols=152 Identities=16% Similarity=0.013 Sum_probs=96.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
.++|.+++..|-..|..+... .|....|..++. .+.+..++..|+-.|.|..... ++.|..|
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl--~s~~~~v~~~A~~aL~nLs~~~-----~~nk~~I 325 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSAHC-----TENKADI 325 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT--TCCSHHHHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHccCC-----HHHHHHH
Confidence 367888999988888776542 245566667653 3456778877777777765421 2333333
Q ss_pred H------HHHHHhhCCCCH----HHHHHHHHHHHHHHhh--CCCCC-----CchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906 90 K------QECLSAIGDPSP----LIRATVGILITTIASK--GDLKS-----WPELLPTLNDMLDSQDYNVCELLPVLLPI 152 (191)
Q Consensus 90 k------~~ll~~l~~~~~----~ir~~~~~~i~~Ia~~--e~~~~-----Wpell~~L~~~l~~~~~~~~~~~l~~L~~ 152 (191)
- ..|++.|..... .++..++.++..|+.+ ..++. =.+.+|.|++++.+++...++.+..+|.-
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 2 244555555432 4888888899998863 21111 13578899999998877666666666644
Q ss_pred Hh--------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 153 LK--------------------ETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 153 l~--------------------e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
+. +-+.+.+..+|+.|..++..|+.+.
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 43 1233456777888877777777653
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=88.05 E-value=8.3 Score=32.96 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHhhc-----------CCChHHHHHHHHhhhCCCC--hhHHhHHHHHHHHhhhhhhcCCChhHHHH
Q psy9906 22 SPDNLIQRAVQHKLEQLNT-----------HPDFNNYLIFVLTKLTSED--EPTRSLSGLILKNNVRARFYEFPPGVSEF 88 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~-----------~~~~~~~L~~il~~~~~~~--~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ 88 (191)
+++..+++.|-..|.++.. ..|....|..++.. .... ..++.-|+-.|+|.-.. . .-+++.+..
T Consensus 298 s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~-~~~~~~~~v~~~A~~aL~nLs~~-~-a~~~~~~~~ 374 (458)
T 3nmz_A 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSL-I-ATNEDHRQI 374 (458)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSTTHHHHHHHHHHHHHHHH-H-TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHhc-c-cCCHHHHHH
Confidence 3467788777666655443 35677777788752 2111 14777777777775431 1 123555665
Q ss_pred HHH-----HHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC---C-chHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 89 IKQ-----ECLSAIGDPSPLIRATVGILITTIASKGDLKS---W-PELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 89 ik~-----~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~---W-pell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
+++ .|++.|.+.+..++..++.++..++..+.... . -+.+|.|++++.+++...++.+..+|.-+..
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 553 56777778889999999999999996442111 1 2578899999998888888999888877665
No 80
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.97 E-value=6.9 Score=30.64 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=40.3
Q ss_pred CCChhHHhHHHHHHHHhhhhhhcCCC--hhHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q psy9906 57 SEDEPTRSLSGLILKNNVRARFYEFP--PGVSEFIKQECLSA-IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND 133 (191)
Q Consensus 57 ~~~~~vRq~A~i~LKn~i~~~W~~i~--~~~k~~ik~~ll~~-l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~ 133 (191)
+.+..+|.+|...++- |...+ ..+.+.+- .+++. ..+++..||+.+|..+..+++.+ |+.+..+++
T Consensus 150 d~n~~VRR~Ase~~rp-----W~~~~~~k~dp~~ll-~iL~~L~~D~s~yVrKSVan~LrD~SK~~-----Pd~V~~~~~ 218 (240)
T 3l9t_A 150 SSNLHTRRAATEGLRI-----WTNRPYFKENPNEAI-RRIADLKEDVSEYVRKSVGNALRDISKKF-----PDLVKIELK 218 (240)
T ss_dssp CSSHHHHHHHHHHTCS-----GGGSTTTTTCHHHHH-HHHHTTTTCSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHhhHH-----HhccchhhcCHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHhhhC-----HHHHHHHHH
Confidence 3455566666555542 44321 12222233 23333 33578999999999999999888 666666655
Q ss_pred Hhh
Q psy9906 134 MLD 136 (191)
Q Consensus 134 ~l~ 136 (191)
.-.
T Consensus 219 ~w~ 221 (240)
T 3l9t_A 219 NWK 221 (240)
T ss_dssp TCC
T ss_pred Hhh
Confidence 443
No 81
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.66 E-value=10 Score=34.75 Aligned_cols=153 Identities=13% Similarity=0.036 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHhhc-----CC-----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHH
Q psy9906 22 SPDNLIQRAVQHKLEQLNT-----HP-----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91 (191)
Q Consensus 22 s~d~~~r~~AE~~L~~~~~-----~~-----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~ 91 (191)
+.+.++|.-|-..|++.-+ -| ..-.+++..+...++.+..+|...+..+-..+++.|..-=+ .+=.
T Consensus 69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp----~~l~ 144 (963)
T 2x19_B 69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP----CAVA 144 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST----THHH
T ss_pred CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc----hHHH
Confidence 5688999999988886421 11 23445666665323346788887777777777765521101 1223
Q ss_pred HHHHhhCC-----CCHHHHHHHHHHHHHHHhhC----C------------CCCCchHHHHHHHHhhcCCcc--ccchhhh
Q psy9906 92 ECLSAIGD-----PSPLIRATVGILITTIASKG----D------------LKSWPELLPTLNDMLDSQDYN--VCELLPV 148 (191)
Q Consensus 92 ~ll~~l~~-----~~~~ir~~~~~~i~~Ia~~e----~------------~~~Wpell~~L~~~l~~~~~~--~~~~~l~ 148 (191)
.+++.+.+ ++...+..+-.++..+.... . ...-|.+++.+.+.+++.+.. ....++.
T Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~ 224 (963)
T 2x19_B 145 DMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLK 224 (963)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHH
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 45555544 24445555566666555311 1 122355666666666544221 3444555
Q ss_pred HHHH-----------------HhhhcCCCcHHHHHHHHHHHHHHhhhhh
Q psy9906 149 LLPI-----------------LKETLFHHDWEIKESGILALGAIAEVNK 180 (191)
Q Consensus 149 ~L~~-----------------l~e~l~~~~~~~r~~~i~~~~ai~~~~~ 180 (191)
|+.. +.+-+ .+++.|++++.+++.|+.+..
T Consensus 225 ~l~~wi~~~~~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 225 CFSSWVQLEVPLQDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp HHHHHHTSSCCGGGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHcCCCCcccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcccc
Confidence 5521 11111 367889999999999998643
No 82
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.63 E-value=11 Score=32.76 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=32.8
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHhhc
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW-PELLPTLNDMLDS 137 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W-pell~~L~~~l~~ 137 (191)
+...+++|+..+-++++. .+ +-.+.-=+.++.+.-+.+..||.++..-+..+++. +| +-+...|.|+++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~----FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKH----FP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT 111 (507)
T ss_dssp CHHHHHHHHHHHHHHGGG----CG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhh----Ch-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc
Confidence 455566665544433332 21 22222223444555555555555555555555544 22 3344455555554
Q ss_pred CC
Q psy9906 138 QD 139 (191)
Q Consensus 138 ~~ 139 (191)
.+
T Consensus 112 dd 113 (507)
T 3u0r_A 112 DD 113 (507)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.61 E-value=20 Score=33.12 Aligned_cols=116 Identities=11% Similarity=-0.033 Sum_probs=77.0
Q ss_pred ChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC--------------CCCCC
Q psy9906 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG--------------DLKSW 124 (191)
Q Consensus 59 ~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e--------------~~~~W 124 (191)
.+-+|..|+-.+-++-. | ++++.-..+=..+++.|.+++..||..++.++..++... .....
T Consensus 471 ~p~vr~~a~~~lg~~~~--~--~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRN--Q--LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp CHHHHHHHHHHHHHTGG--G--SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CceehHHHHHHHHHHHh--h--CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 67789888887776654 4 355555555567888888888999999999999988741 12346
Q ss_pred chHHHHHHHHhhcCC-----ccccchhhhHHHHHhh----hc-------------------CC-CcHHHHHHHHHHHHHH
Q psy9906 125 PELLPTLNDMLDSQD-----YNVCELLPVLLPILKE----TL-------------------FH-HDWEIKESGILALGAI 175 (191)
Q Consensus 125 pell~~L~~~l~~~~-----~~~~~~~l~~L~~l~e----~l-------------------~~-~~~~~r~~~i~~~~ai 175 (191)
+.+++.|+.+++... ....+.++.++..+.+ ++ .+ .+...+...+.++|+|
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 788888888887741 1133455555533322 11 11 2455666677788888
Q ss_pred hhh
Q psy9906 176 AEV 178 (191)
Q Consensus 176 ~~~ 178 (191)
+..
T Consensus 627 ~~~ 629 (960)
T 1wa5_C 627 LNY 629 (960)
T ss_dssp HHT
T ss_pred Hhc
Confidence 775
No 84
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=86.38 E-value=1.1 Score=42.41 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=52.5
Q ss_pred HHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhC
Q psy9906 62 TRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS-PLIRATVGILITTIASKG 119 (191)
Q Consensus 62 vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~-~~ir~~~~~~i~~Ia~~e 119 (191)
.|..+..++..++-++.-.++++++..|.+.++.+|.++. -.||..++.+++.+.+..
T Consensus 817 ~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 8888888888888888777889999999999999999999 999999999999999775
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.01 E-value=23 Score=33.35 Aligned_cols=166 Identities=10% Similarity=0.083 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcC--CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906 7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQ-LNTH--PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP 83 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~-~~~~--~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~ 83 (191)
++....+++.|.. +.|+-+|..|--.+-- +... +..+.-|+.++.. ..+..+|+.|.+-|-..... . +
T Consensus 540 ~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g--~---~ 610 (963)
T 4ady_A 540 QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLR--D---Y 610 (963)
T ss_dssp GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSS--S---C
T ss_pred hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccC--C---H
Confidence 3456777788876 4566788777666653 3332 2356657777753 45667999888877533221 1 1
Q ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh-------
Q psy9906 84 GVSEFIKQECLSAIG-DPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE------- 155 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e------- 155 (191)
+ .+ ..+++.|. ..++.+|..++.+++.+....+ . ++.+..|..+..+++...+.+|...|..|--
T Consensus 611 e---~v-~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 611 T---TV-PRIVQLLSKSHNAHVRCGTAFALGIACAGKG--L-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp S---SH-HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred H---HH-HHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--c-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence 1 11 23455444 4788999999998888875443 2 7788888888777777777777777655541
Q ss_pred ------------hc--CCCcHHHHHHHHHHHHHHhhhhhhhchhhcc
Q psy9906 156 ------------TL--FHHDWEIKESGILALGAIAEVNKSIGLKLLC 188 (191)
Q Consensus 156 ------------~l--~~~~~~~r~~~i~~~~ai~~~~~~~~~~~~~ 188 (191)
.+ .+.|...|..+..|.|-|--|..-..++...
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~ 730 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLEN 730 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBC
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 11 1235667777777777777776665555543
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=85.66 E-value=14 Score=30.34 Aligned_cols=152 Identities=16% Similarity=0.012 Sum_probs=97.3
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
.++|.+++.+|-..|..+... .|....|..++. .+.+..++..|+-.|.|.-. ..++.|..|
T Consensus 137 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~--~~~~~~~~~~A~~aL~nLs~-----~~~~nk~~i 209 (354)
T 3nmw_A 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSA-----HCTENKADI 209 (354)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHT-----TCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHc-----cChhhhHHH
Confidence 467889999988888776542 245666777653 24466777777766766543 123444444
Q ss_pred H------HHHHHhhCCCCH----HHHHHHHHHHHHHHhh--CCCCC-----CchHHHHHHHHhhcCCccccchhhhHHHH
Q psy9906 90 K------QECLSAIGDPSP----LIRATVGILITTIASK--GDLKS-----WPELLPTLNDMLDSQDYNVCELLPVLLPI 152 (191)
Q Consensus 90 k------~~ll~~l~~~~~----~ir~~~~~~i~~Ia~~--e~~~~-----Wpell~~L~~~l~~~~~~~~~~~l~~L~~ 152 (191)
. ..|++.|...+. .++..++.++..++.+ ..++. =.+.+|.|++++.+++...++.+..+|.-
T Consensus 210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289 (354)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3 244555555432 5888888899988862 11110 13578999999998877666666666644
Q ss_pred Hh--------------------hhcCCCcHHHHHHHHHHHHHHhhhh
Q psy9906 153 LK--------------------ETLFHHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 153 l~--------------------e~l~~~~~~~r~~~i~~~~ai~~~~ 179 (191)
+. +-+.+.+..+|+.|..++..+..+.
T Consensus 290 La~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 44 2234457788888888888888764
No 87
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=84.99 E-value=20 Score=31.68 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=74.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH-----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFI 89 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~-----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~i 89 (191)
.+++.+++.+|-..|.++... .|.+..|..++. .+.+..++..|+-.|.|.-. .++.|..|
T Consensus 100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~--s~~~~~~~e~aa~aL~nLS~------~~~~k~~I 171 (584)
T 3l6x_A 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR--KARDMDLTEVITGTLWNLSS------HDSIKMEI 171 (584)
T ss_dssp GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHH--HCCSHHHHHHHHHHHHHHTT------SGGGHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHc--CCCCHHHHHHHHHHHHHHhC------CchhhHHH
Confidence 467899999999999887752 366778888885 23466777777767766543 23444433
Q ss_pred HH----HHHHhhC------------------CCCHHHHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHhhc-----
Q psy9906 90 KQ----ECLSAIG------------------DPSPLIRATVGILITTIASKGDL-----KSWPELLPTLNDMLDS----- 137 (191)
Q Consensus 90 k~----~ll~~l~------------------~~~~~ir~~~~~~i~~Ia~~e~~-----~~Wpell~~L~~~l~~----- 137 (191)
-. .|++.+. ..+..++..++.++..++..... .+=+.+++.|+.++++
T Consensus 172 ~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~ 251 (584)
T 3l6x_A 172 VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251 (584)
T ss_dssp HHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc
Confidence 22 2233220 12467888888888888865411 1124566677777653
Q ss_pred -CCccccchhhhHH
Q psy9906 138 -QDYNVCELLPVLL 150 (191)
Q Consensus 138 -~~~~~~~~~l~~L 150 (191)
.+....+.++-+|
T Consensus 252 ~~~~~~~enav~aL 265 (584)
T 3l6x_A 252 DSDSKLVENCVCLL 265 (584)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 2334445455444
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.32 E-value=21 Score=33.66 Aligned_cols=163 Identities=10% Similarity=0.143 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----Ch-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHP----DF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPP 83 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~----~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~ 83 (191)
....|-+++.....++...++.|-..+-.+-... +. ...+-.+.....+-... -.|.+.+..... +...- +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~-~~~~~-~ 87 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIAN-QSNLS-P 87 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTC-TTTCC-T
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHH-hcCCC-C
Confidence 3444445555555555666777776666654311 11 22222222111111111 444444444332 22221 1
Q ss_pred hHHHHH---HHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcC-CccccchhhhHHHHHhh----
Q psy9906 84 GVSEFI---KQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ-DYNVCELLPVLLPILKE---- 155 (191)
Q Consensus 84 ~~k~~i---k~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~-~~~~~~~~l~~L~~l~e---- 155 (191)
..-.++ -..++.++.+-...||+++..++..|++.-.|..-+.++|.|+..+.+. .|..+.+++.++..+.+
T Consensus 88 ~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 88 SVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp TTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred CcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 122333 3566667777788999999999999999998877789999999999766 68888888887755543
Q ss_pred ---------------hcCCCcHHHHHHHHHHHHHH
Q psy9906 156 ---------------TLFHHDWEIKESGILALGAI 175 (191)
Q Consensus 156 ---------------~l~~~~~~~r~~~i~~~~ai 175 (191)
.+.+.-.++..+|..++.++
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 45666677888766655543
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=82.43 E-value=5.4 Score=36.81 Aligned_cols=70 Identities=9% Similarity=0.027 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-----CC-----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh
Q psy9906 7 EEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT-----HP-----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA 76 (191)
Q Consensus 7 ~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-----~~-----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~ 76 (191)
|+...-+.++|.. +.|.++|.-|-..|++.-+ -| ..-.+++..+....+.+..+|...+..+-..+++
T Consensus 38 p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 38 PQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVH 115 (971)
T ss_dssp THHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 3444445555543 5688999999888886421 11 2345566666543334678888888777777777
Q ss_pred hh
Q psy9906 77 RF 78 (191)
Q Consensus 77 ~W 78 (191)
.|
T Consensus 116 ~~ 117 (971)
T 2x1g_F 116 ML 117 (971)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=80.24 E-value=3.6 Score=36.88 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=45.1
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLS-----AIGDPSPLIRATVGILITTIASKGD 120 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~-----~l~~~~~~ir~~~~~~i~~Ia~~e~ 120 (191)
++.++..|..|+..|.|.+.. +...+..+++.++. +|.+++..||..++.++..++..++
T Consensus 44 ~S~~~~~r~~A~~al~~l~~~-----~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 44 KSPDAKSRTTAAGAIANIVQD-----AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp SSSCCSHHHHHHHHHHHHTTS-----HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcC-----cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 567889999999999998842 23444455554443 3556899999999999999988764
No 91
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=78.19 E-value=36 Score=30.05 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC
Q psy9906 47 YLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEF-----IKQECLSAIGDPSPLIRATVGILITTIASKGDL 121 (191)
Q Consensus 47 ~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~-----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~ 121 (191)
.|+.++. .+....++..|+-.|.|.....|.. +...+.. .-..|++.|..++..++..++.++..++...
T Consensus 312 ~Ll~LL~--~s~~~~v~E~Aa~AL~nL~ag~~~~-~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-- 386 (584)
T 3l6x_A 312 IYISLLK--ESKTPAILEASAGAIQNLCAGRWTY-GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386 (584)
T ss_dssp HHHHHHH--HCCCHHHHHHHHHHHHHHHSSCSHH-HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHc--cCCCHHHHHHHHHHHHHHHcCCccc-cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--
Confidence 4455553 2345667777777777776554431 1222322 2446777778889999999999999999754
Q ss_pred CCC----chHHHHHHHHhhcC
Q psy9906 122 KSW----PELLPTLNDMLDSQ 138 (191)
Q Consensus 122 ~~W----pell~~L~~~l~~~ 138 (191)
..+ ...+|.|++++.++
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGG 407 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSS
T ss_pred hHHHHHHhCCHHHHHHHhcCC
Confidence 333 24788899999876
No 92
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=77.38 E-value=35 Score=30.61 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHH----------HHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 6 QEEGLIQILQLLKESQSPDNLIQ----------RAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 6 ~~~~~~~l~~lL~~~~s~d~~~r----------~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
+.+.+...++.|...++++.... .-+...-+.|-+.++....|+.++. +.+-.+|..+.-+|.....
T Consensus 75 D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~---~~df~vR~~alqlL~~L~~ 151 (651)
T 3grl_A 75 DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE---EFDFHVRWPGVKLLTSLLK 151 (651)
T ss_dssp CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc---CccHHHHHHHHHHHHHHHh
Confidence 33445666777777777754321 1122233355566888999999984 5688899999888888876
Q ss_pred hhhcCCChhHHHHHH------HHHHHhhCCCCHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHhhc
Q psy9906 76 ARFYEFPPGVSEFIK------QECLSAIGDPSPLIRATVGILITTIASKGDL----KSWPELLPTLNDMLDS 137 (191)
Q Consensus 76 ~~W~~i~~~~k~~ik------~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~----~~Wpell~~L~~~l~~ 137 (191)
.+-. ..++.|. ..|+..|.++...+|+....++..+.+.... -...+.++.|++.+..
T Consensus 152 ~r~~----~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 152 QLGP----QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HSHH----HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCcH----HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 5321 1222222 2455566666677777777777777665521 0122345556666554
No 93
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=77.19 E-value=32 Score=31.57 Aligned_cols=100 Identities=8% Similarity=-0.082 Sum_probs=64.8
Q ss_pred CChhHHHH----HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHhhc---CCccccchhhhHH
Q psy9906 81 FPPGVSEF----IKQECLSAIGDPSPLIRATVGILITTIASKGD---LKSWPELLPTLNDMLDS---QDYNVCELLPVLL 150 (191)
Q Consensus 81 i~~~~k~~----ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~---~~~Wpell~~L~~~l~~---~~~~~~~~~l~~L 150 (191)
+++++++. ++..++.++.+.+..+.+.+..++..+|-.+| .---|.++..+...++. ..++..-.++.+|
T Consensus 328 Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l 407 (799)
T 1vsy_4 328 LTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQF 407 (799)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 56666654 44455556778889999999999999999986 44456677777777766 4567777788888
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhh
Q psy9906 151 PILKETLFHHDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 151 ~~l~e~l~~~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
..++..+.... .+|.--+..+...+.|+++
T Consensus 408 ~~~~r~lv~~~-~yr~hl~~lL~l~LpgID~ 437 (799)
T 1vsy_4 408 TRVIRFIVMDK-LYRVHITNVLSMLVSKLDM 437 (799)
T ss_dssp HTTHHHHTTST-TGGGHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhcCc-ccHHHHHHHHHHHhccCCc
Confidence 66666443321 1233333344555555544
No 94
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.63 E-value=16 Score=34.41 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhc----CCccccchhhhHH--HHHh
Q psy9906 81 FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDS----QDYNVCELLPVLL--PILK 154 (191)
Q Consensus 81 i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~----~~~~~~~~~l~~L--~~l~ 154 (191)
.++-++..++ .|++.-.+.-+.||+.+-.++..+.+. +++.++.++|.+++.++. .+.+..+|++++| +.+.
T Consensus 127 ~t~l~~~ll~-dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~-~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 127 ASKLENLLLV-DIIQLATSLYPDIYKPAQGTLVHCMKQ-LVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp CCSHHHHHHH-HHHHHHTSSCHHHHHHHHHHHHHHHTT-BTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred CChHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 5566666665 556655566789999999999999887 688999999999998875 3667789999988 4554
Q ss_pred hhcCCCcHHHHHHHHHHH
Q psy9906 155 ETLFHHDWEIKESGILAL 172 (191)
Q Consensus 155 e~l~~~~~~~r~~~i~~~ 172 (191)
..+. .+|.....-+.++
T Consensus 205 ~~~~-~d~~~~~~~~~al 221 (997)
T 1vsy_5 205 RKLM-TDYKDIGRLIFLL 221 (997)
T ss_dssp HHGG-GCHHHHHHHHHHH
T ss_pred hHHh-cChHHHHHHHHHH
Confidence 4433 5777666655544
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=72.59 E-value=39 Score=27.80 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHhhcC-CChHH-----HHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhh
Q psy9906 24 DNLIQRAVQHKLEQLNTH-PDFNN-----YLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAI 97 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~-~~~~~-----~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l 97 (191)
|+..++++-..+--+-.+ .+|.. ....++...++.+...|++.-++++++-+. +++.- .+-+.+.+-+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-----~~e~i-Lv~Nsl~kDl 113 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-----AEDVI-IVTSSLTKDM 113 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-----SSCGG-GGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-----HHHHH-HHHHHHHhhc
Confidence 555555555555544332 33422 222333334678999999999999876554 44443 6677888888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhh---------------hcCCCcH
Q psy9906 98 GDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE---------------TLFHHDW 162 (191)
Q Consensus 98 ~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e---------------~l~~~~~ 162 (191)
.++++.+|-.+-.++ ++.-.++--+.+.+.+.+.+.+.++..+..|..+.-.+.. -+-+.+.
T Consensus 114 ~~~N~~iR~lALRtL---~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~ 190 (355)
T 3tjz_B 114 TGKEDSYRGPAVRAL---CQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNI 190 (355)
T ss_dssp HSSCHHHHHHHHHHH---HHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSH
T ss_pred CCCcHhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCc
Confidence 899999985544444 4444455677888889999999888777777766544332 2334455
Q ss_pred HHHHHHHHHHHHHhh
Q psy9906 163 EIKESGILALGAIAE 177 (191)
Q Consensus 163 ~~r~~~i~~~~ai~~ 177 (191)
-+...|+.++..|-+
T Consensus 191 ~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 191 MVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHh
Confidence 555556555555544
No 96
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=72.44 E-value=31 Score=26.54 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906 10 LIQILQLLKESQSPDN--LIQRAVQHKLEQLNT----------HPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR 77 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~--~~r~~AE~~L~~~~~----------~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~ 77 (191)
+..++++| .++|. +++..|-..|..+.. ..|.++.|..++. +.+..+|..|+-.|+|....
T Consensus 10 i~~lV~lL---~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~---s~~~~vq~~Aa~aL~nLa~~- 82 (233)
T 3tt9_A 10 LERAVSML---EADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK---VQNEDVQRAVCGALRNLVFE- 82 (233)
T ss_dssp HHHHHHTC---CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHh---CCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhC-
Confidence 44444444 45555 776666666665442 2466777788874 46788999999999988642
Q ss_pred hcCCChhHHHHHHH-----HHHHhhC-CCCHHHHHHHHHHHHHHHhhC
Q psy9906 78 FYEFPPGVSEFIKQ-----ECLSAIG-DPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 78 W~~i~~~~k~~ik~-----~ll~~l~-~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+++.|..|.+ .|++.|. ..+..++..++.++-.++..+
T Consensus 83 ----~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 83 ----DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred ----CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 2455555544 3555565 356777777776766666554
No 97
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=69.98 E-value=67 Score=29.44 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=74.8
Q ss_pred ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc---CC----ChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9906 43 DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY---EF----PPGVSEFIKQECLSAIGDPSPLIRATVGILITTI 115 (191)
Q Consensus 43 ~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~---~i----~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I 115 (191)
+++..|..++. +.+..+|..|+-.+-|.+...=. .+ .+.....++ .++..+...+..+|+.++.+++.+
T Consensus 606 ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~-lLV~Ll~s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 606 VYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN-ILVKLLQLSDVESQRAVAAIFANI 681 (778)
T ss_dssp HHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH-HHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH-HHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45666666653 45778999999999999863210 11 112222233 566777778999999999999998
Q ss_pred HhhCC------CCCCchHHHHHHHHhhc--CCccccchhhhHHHHHhh
Q psy9906 116 ASKGD------LKSWPELLPTLNDMLDS--QDYNVCELLPVLLPILKE 155 (191)
Q Consensus 116 a~~e~------~~~Wpell~~L~~~l~~--~~~~~~~~~l~~L~~l~e 155 (191)
...++ ... +++++.++++++. ++...++.+..++.-+.+
T Consensus 682 ts~~~~ia~~ll~~-~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 682 ATTIPLIAKELLTK-KELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHCHHHHHHHTTC-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHc-cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 65442 122 4788888888888 688888889888865554
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=69.47 E-value=36 Score=26.14 Aligned_cols=125 Identities=20% Similarity=0.138 Sum_probs=76.7
Q ss_pred cCCCHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH----------PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIK 90 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~----------~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik 90 (191)
.+++.+++.+|-..|..+... .|....|..++. .+.+..+|..|+-.|.|.-. .++.|..|.
T Consensus 62 ~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~--~~~~~~~~e~a~~aL~nLS~------~~~~k~~i~ 133 (233)
T 3tt9_A 62 KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLK--QTRDLETKKQITGLLWNLSS------NDKLKNLMI 133 (233)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHT------SGGGHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHc--cCCCHHHHHHHHHHHHHHHc------ChhhHHHHH
Confidence 357889999999999887642 356777888885 23567788877777766532 244455444
Q ss_pred HHHHHhhCC--------------------CCHHHHHHHHHHHHHHHhhC--CC---CCCchHHHHHHHHhhcC------C
Q psy9906 91 QECLSAIGD--------------------PSPLIRATVGILITTIASKG--DL---KSWPELLPTLNDMLDSQ------D 139 (191)
Q Consensus 91 ~~ll~~l~~--------------------~~~~ir~~~~~~i~~Ia~~e--~~---~~Wpell~~L~~~l~~~------~ 139 (191)
+.-+..|.+ .+..++...+.|+..++..+ .. .+-+.+++.|+.+++.. +
T Consensus 134 ~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~ 213 (233)
T 3tt9_A 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPD 213 (233)
T ss_dssp HHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTT
T ss_pred hccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccch
Confidence 443443322 14578888888888887654 11 12356777777776542 2
Q ss_pred ccccchhhhHHHHH
Q psy9906 140 YNVCELLPVLLPIL 153 (191)
Q Consensus 140 ~~~~~~~l~~L~~l 153 (191)
....|.++-+|.-+
T Consensus 214 ~k~~En~v~~L~nL 227 (233)
T 3tt9_A 214 DKATENCVCILHNL 227 (233)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33455555555433
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.45 E-value=38 Score=26.40 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHh-hCCCCCCchHHHHHHH
Q psy9906 56 TSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG-DPSPLIRATVGILITTIAS-KGDLKSWPELLPTLND 133 (191)
Q Consensus 56 ~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~-~~~~~ir~~~~~~i~~Ia~-~e~~~~Wpell~~L~~ 133 (191)
++...++|.+|+-+|-.. . -.++.-..|| .-+. +..-.||-.++.++..++. .+ |+ ..++.+..
T Consensus 81 ~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir----~~va~D~~WrVre~lA~a~~~~~~~~~-pe---~~l~~~~~ 146 (240)
T 3l9t_A 81 QSDVYQVRMYAVFLFGYL-S-----KDKEILIFMR----DEVSKDNNWRVQEVLAKAFDEFCKKIE-YK---KALPIIDE 146 (240)
T ss_dssp TCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHH----HTGGGCSCHHHHHHHHHHHHHHHHHHC-TT---TTHHHHHH
T ss_pred hCcchHHHHHHHHHHHhc-c-----CcHHHHHHHH----HHhCCCCCccHHHHHHHHHHHHHHhcC-HH---HHHHHHHH
Confidence 345679999999866554 2 1133332333 3233 5788999999999999997 44 33 27788888
Q ss_pred HhhcCCccccchhhhH
Q psy9906 134 MLDSQDYNVCELLPVL 149 (191)
Q Consensus 134 ~l~~~~~~~~~~~l~~ 149 (191)
...++|+..+..+...
T Consensus 147 W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 147 WLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHh
Confidence 8888888776666554
No 100
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=69.39 E-value=3 Score=39.45 Aligned_cols=23 Identities=17% Similarity=0.240 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHHHHHhhhhhhh
Q psy9906 160 HDWEIKESGILALGAIAEVNKSI 182 (191)
Q Consensus 160 ~~~~~r~~~i~~~~ai~~~~~~~ 182 (191)
.+|..|++++.|+|||++|+.+-
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~ 487 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSED 487 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCch
Confidence 58999999999999999998764
No 101
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.58 E-value=51 Score=27.52 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--hcCC----ChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCC
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQL--NTHP----DFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFP 82 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~--~~~~----~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~ 82 (191)
.-+.++++|.+.....++++-..=.+.+++ .+.| +|...++.+. ...+..+|.+.+-++.....++
T Consensus 23 ~~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~---~d~~~~vRk~~a~FieEa~~~~----- 94 (386)
T 3o2t_A 23 TSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQ---ADKSIEVRKFVIGFIEEACKRD----- 94 (386)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGG---GCSCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc---cCCcHHHHHHHHHHHHHHHHHH-----
Confidence 346778888877542223444444444442 2345 4555554443 3457889998888887776642
Q ss_pred hhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCc----cccchhhhHH-HHHhhhc
Q psy9906 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDY----NVCELLPVLL-PILKETL 157 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~----~~~~~~l~~L-~~l~e~l 157 (191)
.+.-..+-..|...|.+.++.+.+.+..+.+.|. |-.+..+.. +++. ......|.-+ ..|...+
T Consensus 95 ~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY--------pl~f~~i~~---~~~~~~~~e~~W~~m~~lK~~Il~~~ 163 (386)
T 3o2t_A 95 IELLLKLIANLNMLLRDENVNVVKKAILTMTQLY--------KVALQWMVK---SRVISELQEACWDMVSAMAGDIILLL 163 (386)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH--------HHHHHHHHH---C-CCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH--------HHHHHHHhc---CCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 2223344446666677778877777777776654 333332221 1211 1222233322 3333333
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q psy9906 158 FHHDWEIKESGILALGAIA 176 (191)
Q Consensus 158 ~~~~~~~r~~~i~~~~ai~ 176 (191)
-+.+..+|..+++-+..++
T Consensus 164 ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 164 DSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp GCSSHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHH
Confidence 3446677777776555544
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=63.59 E-value=56 Score=29.27 Aligned_cols=143 Identities=17% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CCh-----HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhc---
Q psy9906 9 GLIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDF-----NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFY--- 79 (191)
Q Consensus 9 ~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~-----~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~--- 79 (191)
.+..|++-+.. +.-.+-|+.|-..|+.+.++ +.. ...|+.++..+ ..|.++=..+.-.|-+.+...=.
T Consensus 22 tI~~L~~Rl~~--~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d-~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 22 TIQKLCDRVAS--STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTD-RSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHH--CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhh--ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCCCCcccc
Confidence 34555555555 33568999999999999874 333 45577777632 34555545555556555542100
Q ss_pred -CCC----h-----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCC------chHHHHHHHHhhc
Q psy9906 80 -EFP----P-----------GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW------PELLPTLNDMLDS 137 (191)
Q Consensus 80 -~i~----~-----------~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~W------pell~~L~~~l~~ 137 (191)
..+ + ...+.| ..|+..|.+.+..+|-...+++..+...-+...| |.-++.|++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~d~f~~~~~~i-~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 99 EENSTRQSEDLGSQFTEIFIKQQENV-TLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ---------CHHHHHHHHHHHSTHHH-HHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred cccccccchHHHHHHHHHHHcCCccH-HHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 000 0 001112 2456677778999999999999999987744333 6778889999988
Q ss_pred CCccccchhhhHHHHHhh
Q psy9906 138 QDYNVCELLPVLLPILKE 155 (191)
Q Consensus 138 ~~~~~~~~~l~~L~~l~e 155 (191)
+....+.-++.+|..+..
T Consensus 178 ~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTR 195 (651)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 766666666666666654
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=59.87 E-value=86 Score=27.15 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh-hcCCChhH
Q psy9906 10 LIQILQLLKESQSP-DNLIQRAVQHKLEQLNT-HPD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR-FYEFPPGV 85 (191)
Q Consensus 10 ~~~l~~lL~~~~s~-d~~~r~~AE~~L~~~~~-~~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~-W~~i~~~~ 85 (191)
+..+..+|.+.+.. |+.++......|.++-+ +|. ....++.-+. +.+..+|--+.-.++..+..- =..++.+.
T Consensus 98 i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~---~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~ 174 (507)
T 3u0r_A 98 LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL---QGEDIVRERAIKFLSTKLKTLPDEVLTKEV 174 (507)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHGGGSCTTTSCHHH
T ss_pred hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHhhcchhhccHHH
Confidence 34455555555554 45666666666665544 222 1222222221 124566766666666555532 12366788
Q ss_pred HHHHHHHHHHhhCCCC--H-----------------HHHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHhhcCCc--cc
Q psy9906 86 SEFIKQECLSAIGDPS--P-----------------LIRATVGILITTIASKG--DLKSWPELLPTLNDMLDSQDY--NV 142 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~--~-----------------~ir~~~~~~i~~Ia~~e--~~~~Wpell~~L~~~l~~~~~--~~ 142 (191)
..+|...+.+.|.+-. . .=+-.+..++...|..+ +.-.=++-+..+++++...=+ ..
T Consensus 175 E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~ 254 (507)
T 3u0r_A 175 EELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK 254 (507)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888875421 1 11345666777777665 222346777777777654311 11
Q ss_pred cchhhhHHHHHhhhcC
Q psy9906 143 CELLPVLLPILKETLF 158 (191)
Q Consensus 143 ~~~~l~~L~~l~e~l~ 158 (191)
.-.+-..+.|+|+.++
T Consensus 255 ~v~StkFv~y~~~kIl 270 (507)
T 3u0r_A 255 NVHSTRFVTYFCEQVL 270 (507)
T ss_dssp TBCCHHHHHHHHHHTG
T ss_pred CCChHHHHHHHHHhhc
Confidence 1224456788888654
No 104
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.77 E-value=1.2e+02 Score=28.06 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.0
Q ss_pred CCcHHHHHHHHHHHHHHhhhh
Q psy9906 159 HHDWEIKESGILALGAIAEVN 179 (191)
Q Consensus 159 ~~~~~~r~~~i~~~~ai~~~~ 179 (191)
..+|..+++++.++|+|++++
T Consensus 464 ~~~W~~~eaal~algsia~~~ 484 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTM 484 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHHHhccc
Confidence 368999999999999998864
No 105
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=50.69 E-value=1.6e+02 Score=28.74 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHhhcC-------------------CChHHHHHHHHhh-hCCCChhHHhHHHHHHHHhhhhhhcCCCh
Q psy9906 24 DNLIQRAVQHKLEQLNTH-------------------PDFNNYLIFVLTK-LTSEDEPTRSLSGLILKNNVRARFYEFPP 83 (191)
Q Consensus 24 d~~~r~~AE~~L~~~~~~-------------------~~~~~~L~~il~~-~~~~~~~vRq~A~i~LKn~i~~~W~~i~~ 83 (191)
+...|+.||..++.--+. .++...++.+... ..+.++.+|.+|....+..+... +.
T Consensus 358 n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~ 433 (1323)
T 3s4w_B 358 STQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF----DT 433 (1323)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----CH
T ss_pred CchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----cc
Confidence 345799999998863332 2333344444322 24678899999999888777743 23
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
..|..|-..|+..+.+.+..=...+-.++..++...
T Consensus 434 ~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~ 469 (1323)
T 3s4w_B 434 YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN 469 (1323)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC
Confidence 444444455555555443332344666777777643
No 106
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.47 E-value=9.8 Score=27.21 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=35.0
Q ss_pred HHHHHHHhhC--CC-CCCchHHHHHHHHhhcCCccccchhhhHHHHHhh
Q psy9906 110 ILITTIASKG--DL-KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKE 155 (191)
Q Consensus 110 ~~i~~Ia~~e--~~-~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e 155 (191)
....+||+.- ++ +.+.++++.|...++..+++.+.=+|.+|.+++.
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~ 78 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG 78 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH
Confidence 3445555554 33 3468999999999999888888889999999884
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=47.65 E-value=1.9e+02 Score=27.32 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHH----HHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhH
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT--HPDFNNY----LIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGV 85 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~--~~~~~~~----L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~ 85 (191)
-+-.+|....+-++.+|+.|+.....+-+ .|..... |+..+. ++.-=+.+..|.-++.+.+...-..+ ...
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~ 172 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIV--ETNKWQEKIAILAAFSAMVDAAKDQV-ALR 172 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHSHHHH-HHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHHhHHHH-HHh
Confidence 35556666666689999999999998765 3544333 333332 23345788999989988887431111 111
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCC
Q psy9906 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 86 k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~ 139 (191)
-..|-..+-+++-+.-+.|+.+...++..++..-.+.+=.-++|.|+..+.+++
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh
Confidence 123333455567778899999999999999988777777779999999998874
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=38.80 E-value=1.4e+02 Score=23.45 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=73.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CC------hHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHH
Q psy9906 21 QSPDNLIQRAVQHKLEQLNTH-PD------FNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQEC 93 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~~-~~------~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~l 93 (191)
..-|+.++-.|=..|+++-+. |+ .-..|=.++.-..+.+.-+-.-|.=.||..+... ++++++-.-+-+.+
T Consensus 43 ~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v--pL~~~~y~Kl~~aL 120 (265)
T 3b2a_A 43 GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV--PMGSKTFLKAAKTL 120 (265)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Confidence 445788888888777776553 23 2222333332234556666666666777666532 35555555555666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCccccchhhhHH
Q psy9906 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLL 150 (191)
Q Consensus 94 l~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L 150 (191)
...+.+++..++--+++.++.+ +. -.--|.+...+++++.|.|.....+|+..|
T Consensus 121 ~dlik~~~~il~~eaae~Lgkl-kv--~~~~~~V~~~l~sLl~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 121 VSLLESPDDMMRIETIDVLSKL-QP--LEDSKLVRTYINELVVSPDLYTKVAGFCLF 174 (265)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHC-CB--SCCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhcCCCchHHHHHHHHhCcC-Cc--ccchHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6666666666666666666666 11 123466666677777666666555555555
No 109
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=36.68 E-value=1.1e+02 Score=27.05 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=52.5
Q ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhhc-CCChHH--HHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcC
Q psy9906 9 GLIQILQLLKE--SQSPDNLIQRAVQHKLEQLNT-HPDFNN--YLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYE 80 (191)
Q Consensus 9 ~~~~l~~lL~~--~~s~d~~~r~~AE~~L~~~~~-~~~~~~--~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~ 80 (191)
+...+.+.|.. +.+|+...|+.|-..+..+-. .|+-.. .+-.++. +...+.++-++.-.+|+-|...|..
T Consensus 362 ~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e~R~~iL~~LL~--~~~~~~v~~~lI~~~KdeI~~al~~ 436 (596)
T 4f52_E 362 SFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLN--TSNHSGVEAFIIQNIKNQIDMSLKR 436 (596)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHhc
Confidence 45556666655 478999999999999997664 344333 3445554 4678899999999999999999875
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.77 E-value=54 Score=27.34 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHhhcCCcc
Q psy9906 62 TRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYN 141 (191)
Q Consensus 62 vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~Wpell~~L~~~l~~~~~~ 141 (191)
.|.-..-.++..+-+. +++--..+=..|++.-.+++..+|+.++..|.+.++.+. +.=+..++.|..++.+.++.
T Consensus 41 ~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~-el~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI-ELLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHH
Confidence 3444444555544432 122223334466666667889999999999999998763 33478888888988877765
Q ss_pred ccchhhhH
Q psy9906 142 VCELLPVL 149 (191)
Q Consensus 142 ~~~~~l~~ 149 (191)
....+..+
T Consensus 116 V~K~~I~~ 123 (386)
T 3o2t_A 116 VVKKAILT 123 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=33.61 E-value=53 Score=29.18 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCCC---CCCchHHHHH-HHHhhcCCccccchhhhHHHHHhhh
Q psy9906 92 ECLSAIGDPSPLIRATVGILITTIASKGDL---KSWPELLPTL-NDMLDSQDYNVCELLPVLLPILKET 156 (191)
Q Consensus 92 ~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~---~~Wpell~~L-~~~l~~~~~~~~~~~l~~L~~l~e~ 156 (191)
.+++.|.++++..|..++.+|+.|+..... -.=.+++..+ ..++.+++...++.+.-+|+-++.+
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 466677888999999999999999852110 0012233332 3345555555566666666555543
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=32.75 E-value=1.1e+02 Score=23.20 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=62.9
Q ss_pred hHHhHHHHHHHHhhhhhhcC---CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHhh
Q psy9906 61 PTRSLSGLILKNNVRARFYE---FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-WPELLPTLNDMLD 136 (191)
Q Consensus 61 ~vRq~A~i~LKn~i~~~W~~---i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~-Wpell~~L~~~l~ 136 (191)
..-..+.-.||..+...+.- +..+ ..+ ..|..+|.++.+.+|..+.++++.++-...++. .+-++..+...-.
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~--~~i-~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETE--EGI-LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSS--SHH-HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCc--HHH-HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 33444555777666544321 1111 123 466667777888999999999998886654333 3334444433211
Q ss_pred cCCccccchhhhHHHHHhhhcC-CCcHHHHHHHHHHHHHHhhhhhhh
Q psy9906 137 SQDYNVCELLPVLLPILKETLF-HHDWEIKESGILALGAIAEVNKSI 182 (191)
Q Consensus 137 ~~~~~~~~~~l~~L~~l~e~l~-~~~~~~r~~~i~~~~ai~~~~~~~ 182 (191)
- ..-.-+..+.+.+. ..+++++.+++.-+-+|+.+++..
T Consensus 146 ~-------~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl 185 (233)
T 2f31_A 146 M-------DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL 185 (233)
T ss_dssp H-------HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH
T ss_pred h-------CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCH
Confidence 1 11112233334443 356788888888877888777643
No 113
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=31.86 E-value=22 Score=31.71 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhh
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKL 55 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~ 55 (191)
...-+++|...+ +|+.+|+=|-..|+++.. .+...||+++.+..
T Consensus 95 ~~dALELL~~~f-~d~~VR~yAV~~L~~~~D-~eL~lYLlQLVQAL 138 (614)
T 3ls8_A 95 VEDSLELLSSHY-TNPTVRRYAVARLRQADD-EDLLMYLLQLVQAL 138 (614)
T ss_dssp HHHHGGGGSTTC-CCHHHHHHHHHHHTTSCH-HHHHHTHHHHHHHG
T ss_pred HHHHHHhCcccC-CCHHHHHHHHHHHHhCCh-HHHHHHHHHHHHhh
Confidence 333345554444 589999999999988765 57888898887653
No 114
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=31.86 E-value=67 Score=27.68 Aligned_cols=34 Identities=6% Similarity=-0.084 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCC
Q psy9906 87 EFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120 (191)
Q Consensus 87 ~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~ 120 (191)
-..|..+++.|.++++.||..+-.|+..+..+-|
T Consensus 446 lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~~ 479 (480)
T 1ho8_A 446 TGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 479 (480)
T ss_dssp HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSC
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 3579999999999999999999999999987754
No 115
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=31.46 E-value=41 Score=30.45 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhC
Q psy9906 3 WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLT 56 (191)
Q Consensus 3 ~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~ 56 (191)
|.|-+ ...-+++|...+ +|+.+|+=|-..|+++.. .+...||+++.+...
T Consensus 104 W~~~~--~~dALeLL~~~f-~~~~VR~yAV~~L~~~~d-e~L~~YLlQLVQALK 153 (696)
T 2x6h_A 104 WAPMD--VEDALELLSPTF-THPQVRKYAVSRLAQAPD-EDLLLYLLQLVQALK 153 (696)
T ss_dssp SCCCC--HHHHHHHHSTTC-CCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHGG
T ss_pred CCCCC--HHHHHHHhcccC-CCHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHH
Confidence 55543 455566666555 578888888888887644 557788888876544
No 116
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=31.42 E-value=1.3e+02 Score=20.88 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=40.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhh
Q psy9906 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTH-PDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR 77 (191)
Q Consensus 1 ~~~~p~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~-~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~ 77 (191)
|+|+.+ .+...|.+. ++..+-.+.+-..+-...+. +.....+..-+. ......-+.++.+||=|-|-++
T Consensus 1 m~fs~~-----~l~~kL~~L-~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~--~~~~~~~kKL~~lYL~NDVlqn 70 (142)
T 2km4_A 1 MAFSSE-----QFTTKLNTL-EDSQESISSASKWLLLQYRDAPKVAEMWKEYML--RPSVNTRRKLLGLYLMNHVVQQ 70 (142)
T ss_dssp -CCCHH-----HHHHHHHTC-CSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHT--SSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHH-----HHHHHHHhc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hcCCCccceehhhhhHHHHHHH
Confidence 555544 466667555 45666666666666644332 334444555553 2223557889999998888754
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=31.38 E-value=12 Score=29.13 Aligned_cols=14 Identities=7% Similarity=-0.192 Sum_probs=8.9
Q ss_pred cCCCHHHHHHHHHH
Q psy9906 21 QSPDNLIQRAVQHK 34 (191)
Q Consensus 21 ~s~d~~~r~~AE~~ 34 (191)
.+||..+|..|-..
T Consensus 60 ~d~~~~VR~~AA~~ 73 (244)
T 1lrv_A 60 ADPFWERRAIAVRY 73 (244)
T ss_dssp TCSSHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHh
Confidence 45677777776654
No 118
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=31.01 E-value=38 Score=17.57 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHHHHHhhC
Q psy9906 80 EFPPGVSEFIKQECLSAIG 98 (191)
Q Consensus 80 ~i~~~~k~~ik~~ll~~l~ 98 (191)
.++++.|+.+|+.++..-.
T Consensus 8 siseetkqklk~~ils~qs 26 (35)
T 1n6j_G 8 SISEETKQKLKSAILSAQS 26 (35)
T ss_dssp CCCHHHHHHHHHHHHTTCS
T ss_pred cccHHHHHHHHHHHHhhHh
Confidence 4899999999998886543
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=29.81 E-value=2.7e+02 Score=26.20 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhcC-CC-hHHHHHHHHhhhCCCChhHHhHHHHHHHHhh----------hhhhcCCChhHHHHHHHH
Q psy9906 25 NLIQRAVQHKLEQLNTH-PD-FNNYLIFVLTKLTSEDEPTRSLSGLILKNNV----------RARFYEFPPGVSEFIKQE 92 (191)
Q Consensus 25 ~~~r~~AE~~L~~~~~~-~~-~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i----------~~~W~~i~~~~k~~ik~~ 92 (191)
..+|.+|-..|..+... |. .-..|+.++. +...+.++|.+|...|=+.- ..-|..-+.+.+.++.+.
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~-n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~ 570 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRKVQEIVLPIFL-NVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQ 570 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 45777787778777653 33 5667788875 57788899999886553211 112443456666666655
Q ss_pred HHHhhCCC
Q psy9906 93 CLSAIGDP 100 (191)
Q Consensus 93 ll~~l~~~ 100 (191)
|-.+..+.
T Consensus 571 l~sla~s~ 578 (1056)
T 1lsh_A 571 MRSLSRSS 578 (1056)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhcC
Confidence 55554443
No 120
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=28.36 E-value=2.4e+02 Score=22.99 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCCChHH---------HHHHHHhhhCCCChhHHhHHHHHHHHhhhh--hh
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQ-LNTHPDFNN---------YLIFVLTKLTSEDEPTRSLSGLILKNNVRA--RF 78 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~-~~~~~~~~~---------~L~~il~~~~~~~~~vRq~A~i~LKn~i~~--~W 78 (191)
....++++...+.+...++.|-..|++ ++.+.+|.. .|+.+. .+.+.++.-++.-.|.+.+.+ .|
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi---~~~~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG---AAADHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH---TTSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH---HhcChHHHHHHHHHHHHHHhccccc
Confidence 345566666667788999999999998 776666644 344444 244778888888888888875 35
Q ss_pred cCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC------------------CCCCCchHHHHHHHHhh---c
Q psy9906 79 YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG------------------DLKSWPELLPTLNDMLD---S 137 (191)
Q Consensus 79 ~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e------------------~~~~Wpell~~L~~~l~---~ 137 (191)
+.+-. .-..|+ .+...+.+..+.|.+..-.++-.++... .-.-|..++ ..++ +
T Consensus 195 ~gvvs-~~~fI~-~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv----~~L~~~~~ 268 (339)
T 3dad_A 195 LGVVA-HSDTIQ-WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLV----SILEEKNG 268 (339)
T ss_dssp HHHHH-CHHHHH-HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHH----HHHTTTTS
T ss_pred cchhC-CHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHH----HHHhccCC
Confidence 33211 123343 4444444444555444444444443332 122355444 4454 4
Q ss_pred CCccccchhhhHHHHHhhhc
Q psy9906 138 QDYNVCELLPVLLPILKETL 157 (191)
Q Consensus 138 ~~~~~~~~~l~~L~~l~e~l 157 (191)
+|....-.+|.++..+....
T Consensus 269 ~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 269 ADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 56666666777775555544
No 121
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=27.82 E-value=3.5e+02 Score=24.71 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=78.4
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhhcCCC-----h-----------HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhh
Q psy9906 14 LQLLKESQ-SPDNLIQRAVQHKLEQLNTHPD-----F-----------NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRA 76 (191)
Q Consensus 14 ~~lL~~~~-s~d~~~r~~AE~~L~~~~~~~~-----~-----------~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~ 76 (191)
...|.+.+ +.+..+|++|-+-+-++...|+ | ...|..++ .+.+..+|..|+-.|-|.-..
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll---~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL---QLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG---GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH---cCCCHHHHHHHHHHHHHhcCC
Confidence 44555554 4567889989888888776553 1 12344444 357889999999999887432
Q ss_pred hh---cCCChhHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhCC---C-------CCCchHHHHHHHHhhcCC
Q psy9906 77 RF---YEFPPGVSEFIKQECLSAIGD--PSPLIRATVGILITTIASKGD---L-------KSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 77 ~W---~~i~~~~k~~ik~~ll~~l~~--~~~~ir~~~~~~i~~Ia~~e~---~-------~~Wpell~~L~~~l~~~~ 139 (191)
.= ..+-.. ...-+.+++.+.+ .+..+|.-.+.++..++..-+ . ..++.+...+...+++++
T Consensus 685 ~~~ia~~ll~~--~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 685 IPLIAKELLTK--KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp CHHHHHHHTTC--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred ChHHHHHHHHc--cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 10 001111 1233467777776 789999999999999997421 1 236777788888888763
No 122
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=27.51 E-value=2.7e+02 Score=23.19 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhh-------hCCCChhHHhHHHHHHHHhhhhhhc-CCC
Q psy9906 12 QILQLLKESQSPDNLIQRAVQHKLEQLNT-HPDFNNYLIFVLTK-------LTSEDEPTRSLSGLILKNNVRARFY-EFP 82 (191)
Q Consensus 12 ~l~~lL~~~~s~d~~~r~~AE~~L~~~~~-~~~~~~~L~~il~~-------~~~~~~~vRq~A~i~LKn~i~~~W~-~i~ 82 (191)
=+.+++...-|+|+.+|..-...|..+-. ..+.-.++-..+.+ .+... ..-.-.+-+=-.|.+.+. .+.
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~--~GIaeLLeilgsIIngfa~PLK 252 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH--NGIAELLEILGSIINGFALPLK 252 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCC--SCHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCHHHHHHHHHHHHhccCCCCc
Confidence 36677777788899999888888876543 23333222221110 01111 111111111112223333 466
Q ss_pred hhHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhC--------------CCCCCch----HHHHHHHHhhcCCcccc
Q psy9906 83 PGVSEFIKQECLSAIGDP-SPLIRATVGILITTIASKG--------------DLKSWPE----LLPTLNDMLDSQDYNVC 143 (191)
Q Consensus 83 ~~~k~~ik~~ll~~l~~~-~~~ir~~~~~~i~~Ia~~e--------------~~~~Wpe----ll~~L~~~l~~~~~~~~ 143 (191)
++-|.++...|+.+.... -..--.+++.|+......| ||..++. ++..+-..+..-++...
T Consensus 253 eehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f 332 (392)
T 2jak_A 253 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 332 (392)
T ss_dssp HHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 788888887888777653 3444567888888877776 4444432 66666666665544443
Q ss_pred -chhhhHHHHHhhhcCCCcHHHHHHHHH
Q psy9906 144 -ELLPVLLPILKETLFHHDWEIKESGIL 170 (191)
Q Consensus 144 -~~~l~~L~~l~e~l~~~~~~~r~~~i~ 170 (191)
...-.+++.+.+.+-++...+-+.|+.
T Consensus 333 ~~i~~~lF~~la~ci~S~hfqVAErAL~ 360 (392)
T 2jak_A 333 VKIMEPLFRQLAKCVSSPHFQVAERALY 360 (392)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344556688888887777777777764
No 123
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=26.99 E-value=50 Score=31.50 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHH-HHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 23 PDNLIQRAVQHKL-EQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 23 ~d~~~r~~AE~~L-~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
+|+.+|+=|-..| +.+.. .+...||+++.+...-....---+|-.++++.+.
T Consensus 630 ~d~~VR~yAV~~L~~~~~d-deLl~YLlQLVQALKyE~~~ds~La~FLl~RAl~ 682 (1091)
T 3hhm_A 630 PDPMVRGFAVRCLEKYLTD-DKLSQYLIQLVQVLKYEQYLDNLLVRFLLKKALT 682 (1091)
T ss_dssp CCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHGGGGCSSSSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHhhccccccHHHHHHHHHHhh
Confidence 4899999999999 76655 5688899999876543332223456667777665
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=26.57 E-value=2.5e+02 Score=23.04 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=61.7
Q ss_pred hHHhHHHHHHHHhhhhhhcC---CChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHhh
Q psy9906 61 PTRSLSGLILKNNVRARFYE---FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-WPELLPTLNDMLD 136 (191)
Q Consensus 61 ~vRq~A~i~LKn~i~~~W~~---i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e~~~~-Wpell~~L~~~l~ 136 (191)
.....+.-.||..+...+.- +... ..|+ .|..+|.++.+.+|..+.++++.++-...|.. .+-++..+..+-.
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~~~--~~i~-~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLETE--EGIL-LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTCS--SHHH-HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHcCh--HHHH-HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 34444455666665543321 1111 1233 66667777888999999999999987664332 4444444433322
Q ss_pred cCCccccchhhhHHHHHhhhcCC-CcHHHHHHHHHHHHHHhhhhhh
Q psy9906 137 SQDYNVCELLPVLLPILKETLFH-HDWEIKESGILALGAIAEVNKS 181 (191)
Q Consensus 137 ~~~~~~~~~~l~~L~~l~e~l~~-~~~~~r~~~i~~~~ai~~~~~~ 181 (191)
.+ .-.-+..+.+.+.. .+++++.+++..+-+|+.+++.
T Consensus 212 ~~-------e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 212 MD-------EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp HH-------TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred hC-------CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 11 11123333444443 5677888877777777777654
No 125
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=24.97 E-value=57 Score=30.59 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 10 ~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
..+-+++|...+ +|+.+|+-|-..|+.+.. .+...||.++.+...-.+...--+|-.++++.+.
T Consensus 472 ~~~ALeLL~~~f-~d~~Vr~yAv~~L~~~~d-~~l~~yL~QLVQaLkyE~~~~s~L~~fLl~ra~~ 535 (940)
T 2wxf_A 472 VLSALELLDFSF-PDCYVGSFAIKSLRKLTD-DELFQYLLQLVQVLKYESYLDCELTKFLLGRALA 535 (940)
T ss_dssp HHHHHHHTSTTC-CCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHGGGCSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcC-CCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 444455554444 589999999999987544 4578888888775543322223455566666664
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=23.99 E-value=1.6e+02 Score=22.00 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHH-hhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 93 CLS-AIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 93 ll~-~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
++. .+.+++..|+..+|..+..+++.+
T Consensus 163 i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 163 AIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 555 556789999999999999999887
No 127
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=23.98 E-value=53 Score=22.63 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q psy9906 6 QEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT 40 (191)
Q Consensus 6 ~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~ 40 (191)
.+.....+.++|..++..|.++|.-++..+.++..
T Consensus 57 ~~~~~~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~ 91 (122)
T 3a7m_A 57 TRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSS 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888888888887765
No 128
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=22.48 E-value=60 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q psy9906 6 QEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT 40 (191)
Q Consensus 6 ~~~~~~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~ 40 (191)
.+.......++|..++..|.++|.-++..+.++..
T Consensus 60 s~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~ 94 (123)
T 3nkz_A 60 SLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSD 94 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777777777777654
No 129
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=22.30 E-value=2.5e+02 Score=21.11 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=42.1
Q ss_pred CCChhHHhHHHH----HHHHhhhhhhcCCChhHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q psy9906 57 SEDEPTRSLSGL----ILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 57 ~~~~~vRq~A~i----~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+.+.-.|.+|.+ +|-+ .....+++.....+-..+-..+.+++..|+.+++.++..+++.+
T Consensus 119 s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 119 SGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 455666766666 3333 11223456666666656666788899999999999999999997
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=21.26 E-value=2.8e+02 Score=26.09 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhh----hCCCChhHHhHHHHHHHHhhhhhhcCCChh
Q psy9906 10 LIQILQLLKESQS-PDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK----LTSEDEPTRSLSGLILKNNVRARFYEFPPG 84 (191)
Q Consensus 10 ~~~l~~lL~~~~s-~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~----~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~ 84 (191)
+..+.+.|....+ .|...+.-+=..|.++.. |.....|..++.. ..+.+..+|..|...||+... .
T Consensus 438 v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~--------~ 508 (1056)
T 1lsh_A 438 LQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK--------R 508 (1056)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG--------T
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh--------h
Confidence 4555555544433 355555555555666554 7777777777631 122345677888888877764 2
Q ss_pred HHHHHHHHHHHhhCC--CCHHHHHHHHH
Q psy9906 85 VSEFIKQECLSAIGD--PSPLIRATVGI 110 (191)
Q Consensus 85 ~k~~ik~~ll~~l~~--~~~~ir~~~~~ 110 (191)
....+++.+++.+.+ .++.+|-.+..
T Consensus 509 ~p~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 509 DPRKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 345677777787743 57777754433
No 131
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.90 E-value=1.4e+02 Score=21.38 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----HhhCCCCCCchHHHHHHHHhhcCC
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTI----ASKGDLKSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I----a~~e~~~~Wpell~~L~~~l~~~~ 139 (191)
..-..+++.|.+++.++....-.++.+||..+ ...+.|..|.+++..|.+.+...+
T Consensus 53 ~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~ 112 (152)
T 1rw2_A 53 EASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQ 112 (152)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Confidence 34456666777776665555556677777655 333568999999999998776654
No 132
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.88 E-value=1.8e+02 Score=20.78 Aligned_cols=40 Identities=13% Similarity=-0.103 Sum_probs=25.7
Q ss_pred CCCCCchHHHHHHHHhhcCCccccchhhhHHHHHhhhcCC
Q psy9906 120 DLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159 (191)
Q Consensus 120 ~~~~Wpell~~L~~~l~~~~~~~~~~~l~~L~~l~e~l~~ 159 (191)
.|...|.++..++...-..+...++.+..+|..++..+++
T Consensus 38 ~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls 77 (165)
T 2rg8_A 38 LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMS 77 (165)
T ss_dssp CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCC
Confidence 4556677777777655555556677777777777655443
No 133
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=20.31 E-value=29 Score=32.64 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhCCCChhHHhHHHHHHHHhhh
Q psy9906 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75 (191)
Q Consensus 11 ~~l~~lL~~~~s~d~~~r~~AE~~L~~~~~~~~~~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~ 75 (191)
.+-+++|...+ +|+.+|+=|-..|+.+.. .+...||.++.+...-....---+|-.+|++.+.
T Consensus 484 ~~ALeLL~~~f-~d~~VR~yAV~~L~~~~d-~~l~~YL~QLVQaLkyE~~~~s~L~~fLl~ra~~ 546 (961)
T 1e7u_A 484 GLTMQLLDCNF-SDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLR 546 (961)
T ss_dssp HHHHHTTSTTC-CCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHGGGCSSSSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcC-CCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHhc
Confidence 33444443333 489999999999987654 4578888888876542221122455566666665
No 134
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=20.31 E-value=2.9e+02 Score=21.07 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=47.3
Q ss_pred cCCCHHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhhhCCCChhHHhHHHHHHHHhhhhhhcCCChhHHHHHHHHHHHhhC
Q psy9906 21 QSPDNLIQRAVQHKLEQLNT-HPDF-NNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIG 98 (191)
Q Consensus 21 ~s~d~~~r~~AE~~L~~~~~-~~~~-~~~L~~il~~~~~~~~~vRq~A~i~LKn~i~~~W~~i~~~~k~~ik~~ll~~l~ 98 (191)
.|||...|-.|-.++..+.. ++.| .++|-.++.-....+.-||-.|.=.|-|.-.. .+..|..|+ ..++-+.
T Consensus 154 tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-----npklRkii~-~kl~e~~ 227 (253)
T 2db0_A 154 SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL-----NDKLRKVVI-KRLEELN 227 (253)
T ss_dssp SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-----CHHHHHHHH-HHHHHCC
T ss_pred cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-----CHHHHHHHH-HHHHHhc
Confidence 46666666666666665543 2222 22333333222344566666666555554432 233444444 3344455
Q ss_pred CCCHHHHHHHHHHHHHHHhhC
Q psy9906 99 DPSPLIRATVGILITTIASKG 119 (191)
Q Consensus 99 ~~~~~ir~~~~~~i~~Ia~~e 119 (191)
+.+..+....-..++.|+-.|
T Consensus 228 D~S~lv~~~V~egL~rl~l~e 248 (253)
T 2db0_A 228 DTSSLVNKTVKEGISRLLLLE 248 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666665544
No 135
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.30 E-value=1.2e+02 Score=20.65 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----HhhCCCCCCchHHHHHHHHhhcCC
Q psy9906 84 GVSEFIKQECLSAIGDPSPLIRATVGILITTI----ASKGDLKSWPELLPTLNDMLDSQD 139 (191)
Q Consensus 84 ~~k~~ik~~ll~~l~~~~~~ir~~~~~~i~~I----a~~e~~~~Wpell~~L~~~l~~~~ 139 (191)
..-..+++.|.+.+.++...--.++..|+..+ ...+.|..|.+++..|.+.+.+.+
T Consensus 22 ~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~ 81 (120)
T 1q2z_A 22 EASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQ 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh
Confidence 34446666666666655555556677777655 333468889999999988776543
Done!