RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9906
(191 letters)
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain.
Length = 71
Score = 52.6 bits (127), Expect = 8e-10
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 35 LEQLN-THPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARF--YEFPPGVSEFIKQ 91
LEQ P F + L+ +L+ TS D R L+ L LKN + + PP E I+
Sbjct: 5 LEQFEKQDPGFWSKLLQILSD-TSSDLQVRQLAALYLKNLITRHWNQLSLPPEEKEQIRN 63
Query: 92 ECLSAIGD 99
L+ +G
Sbjct: 64 NLLNLLGS 71
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain. Members of
the importin-beta (karyopherin-beta) family can bind
and transport cargo by themselves, or can form
heterodimers with importin-alpha. As part of a
heterodimer, importin-beta mediates interactions with
the pore complex, while importin-alpha acts as an
adaptor protein to bind the nuclear localisation signal
(NLS) on the cargo through the classical NLS import of
proteins. Importin-beta is a helicoidal molecule
constructed from 19 HEAT repeats. Many nuclear pore
proteins contain FG sequence repeats that can bind to
HEAT repeats within importins.. which is important for
importin-beta mediated transport.
Length = 67
Score = 46.1 bits (110), Expect = 2e-07
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 32 QHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQ 91
+ +LEQ P F L+ +L SED+ R L+ + LKN + R+ P E IK
Sbjct: 2 EKQLEQFQKSPGFWLLLLEILA--NSEDQYVRQLAAITLKNKITRRWSSLPEEEKEEIKN 59
Query: 92 ECLSAIGD 99
L +
Sbjct: 60 SLLELLLS 67
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 42.2 bits (99), Expect = 8e-05
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 12 QILQLLKESQ-SPDNLIQRAVQHKLEQLNTHPDFNNY---LIFVLTKLTSEDEPTRSLSG 67
+ L K SPD + + +L +L + DF + L+ VL L S D+ R ++G
Sbjct: 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCDLNSNDQ-LRMVAG 62
Query: 68 LILKNNVRA-----------RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
LILKN++ A R+ E +K L A+ P P L+ IA
Sbjct: 63 LILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIA 122
Query: 117 SKGDLKS-WPELLPTLNDM 134
S WP L+ +
Sbjct: 123 RMELPNSLWPGLMEEMVRN 141
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation
[Cell division and chromosome partitioning].
Length = 947
Score = 39.8 bits (93), Expect = 4e-04
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 7/152 (4%)
Query: 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+ +++ L +QSPD + + +L Q F + + R + +
Sbjct: 3 DLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGF-ALKLLSINLSAFNSMSLRWAALIQ 61
Query: 70 LKNNVRARFYE-----FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW 124
KN + + E P + I+ E S I S ++ + ++ IA W
Sbjct: 62 FKNYIDKHWREENGNSILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEW 121
Query: 125 PELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
P L+P L +L +D E L VL I K
Sbjct: 122 PTLVPDLLSLLSEKDMVTNENSLRVLHHIFKR 153
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 30.2 bits (69), Expect = 0.059
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 149 LLPILKETLFHHDWEIKESGILALGAIAEV 178
LLP+L E L D E++E+ ALGA+AEV
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAEV 30
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 29.1 bits (65), Expect = 1.2
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 91 QECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQ------DYNVCE 144
E L + D L+R + + + + S+ + ELL + + + E
Sbjct: 46 DELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE 105
Query: 145 LLPVLLPILKETLFHHDWEIKESGILALGAI 175
+P L+ +L+ + ++ + ALG +
Sbjct: 106 AVPPLVELLEN---DENEGVRAAAARALGKL 133
>gnl|CDD|177362 PHA02415, PHA02415, DNA primase domain-containing protein.
Length = 930
Score = 29.2 bits (65), Expect = 1.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 26 LIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRAR 77
L+Q Q+ + + T D YL+ L ED P RSL G +++ + +
Sbjct: 654 LLQENYQYTVTRRGT--DMTEYLLCAPVMLAGEDVPVRSLLGKLVRTTLTGK 703
>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
modification].
Length = 975
Score = 28.0 bits (62), Expect = 3.8
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 32/116 (27%)
Query: 89 IKQECLSAIGDPSPLIRA----TVGILITTIASKGDLK---------------SWPELLP 129
I L + P +R +G L + + G+ K +PE+L
Sbjct: 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLG 664
Query: 130 T-LNDM--------LDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIA 176
+ L + S + +LP L PIL+ + ++ + I +G I
Sbjct: 665 SILKAICSIYSVHRFRSMQPPISGILPSLTPILR----NKHQKVVANTIALVGTIC 716
>gnl|CDD|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase. Also called
pyruvate,water dikinase and PEP synthase. The member
from Methanococcus jannaschii contains a large intein.
This enzyme generates phosphoenolpyruvate (PEP) from
pyruvate, hydrolyzing ATP to AMP and releasing inorganic
phosphate in the process. The enzyme shows extensive
homology to other enzymes that use PEP as substrate or
product. This enzyme may provide PEP for
gluconeogenesis, for PTS-type carbohydrate transport
systems, or for other processes [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 782
Score = 27.0 bits (60), Expect = 6.7
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSG 67
+I +L+ + P +L + A++ ++L+ + V + T+ED P S +G
Sbjct: 82 EIRELILNTPFPPDL-EEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAG 136
>gnl|CDD|218230 pfam04724, Glyco_transf_17, Glycosyltransferase family 17. This
family represents beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144).
This enzyme transfers the bisecting GlcNAc to the core
mannose of complex N-glycans. The addition of this
residue is regulated during development and has
functional consequences for receptor signalling, cell
adhesion, and tumour progression.
Length = 357
Score = 27.0 bits (60), Expect = 6.9
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 52 LTKLTSEDEPTRSLSGLILKNNV---RARFYEFPPGVSEFIKQECLS-AIGDPSPL 103
L + P R ++ N R++E P V +F+ E S G P PL
Sbjct: 70 LHGWGPRETPRRVFDAVLFSNEFDLLEVRWHELYPYVDQFVLLESNSTFTGLPKPL 125
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate
kinase/heptose 1-phosphate adenyltransferase;
Provisional.
Length = 473
Score = 26.7 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 LTSEDEPTRSLSGLILKNNVRARFYEFP 82
LT DE R+LS L+ V+ F P
Sbjct: 72 LTGIDEAARALSKLLAAVGVKCDFVSVP 99
>gnl|CDD|236743 PRK10719, eutA, reactivating factor for ethanolamine ammonia lyase;
Provisional.
Length = 475
Score = 26.8 bits (60), Expect = 8.5
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLI 49
+ +L + Q + + A+Q L + P+ + Y +
Sbjct: 340 LPVLIPSDDEQEDEEDLVAAIQQALAWFDLDPETDAYAL 378
>gnl|CDD|147837 pfam05902, 4_1_CTD, 4.1 protein C-terminal domain (CTD). At the
C-terminus of all known 4.1 proteins is a sequence
domain unique to these proteins, known as the C-terminal
domain (CTD). Mammalian CTDs are associated with a
growing number of protein-protein interactions, although
such activities have yet to be associated with
invertebrate CTDs. Mammalian CTDs are generally defined
by sequence alignment as encoded by exons 18-21.
Comparison of known vertebrate 4.1 proteins with
invertebrate 4.1 proteins indicates that mammalian 4.1
exon 19 represents a vertebrate adaptation that extends
the sequence of the CTD with a Ser/Thr-rich sequence.
The CTD was first described as a 22/24-kDa domain by
chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is
thought to represent an independent folding structure
which has gained function since the divergence of
vertebrates from invertebrates.
Length = 114
Score = 25.6 bits (56), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 6 QEEGLIQILQLLKESQSPDNLIQRAVQHK 34
++ L Q ++ KE Q PD + + V HK
Sbjct: 83 HDQALAQAIKEAKE-QHPDMSVTKVVVHK 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,757,460
Number of extensions: 902205
Number of successful extensions: 791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 26
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)