RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9906
(191 letters)
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 160 bits (405), Expect = 6e-46
Identities = 113/165 (68%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
Query: 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
W+P E+GL QILQLLKESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDE
Sbjct: 3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDE 62
Query: 61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD 120
PTRSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+
Sbjct: 63 PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 122
Query: 121 LKSWPELLPTLNDMLDSQDYNVCEL-LPVLLPILKETLFHHDWEI 164
L++WP+LLP L +LDS+DYN CE L I +++ D ++
Sbjct: 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 167
Score = 41.7 bits (97), Expect = 8e-05
Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 17/197 (8%)
Query: 2 AWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQL------NTHPDFNNYLIFVLTKL 55
A + I+ L + + +++ V L L P +N + ++L +
Sbjct: 208 ALMLHIDSFIE--NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT 265
Query: 56 TSEDEPTRS-----LSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
+DE L + + P + + + D L G
Sbjct: 266 QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK----GD 321
Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGIL 170
+ + W + + + ELLP +LP+LKE LFHH+W +KESGIL
Sbjct: 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGIL 381
Query: 171 ALGAIAEVNKSIGLKLL 187
LGAIAE + L
Sbjct: 382 VLGAIAEGCMQGMIPYL 398
Score = 29.4 bits (65), Expect = 0.81
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 35/177 (19%)
Query: 12 QILQLLKESQSPDNLIQRAVQH------KLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSL 65
+ L + LI+ V +L PD L + + L SED T
Sbjct: 94 ECLNNI---GDSSPLIRATVGILITTIASKGELQNWPDL---LPKLCSLLDSEDYNTCEG 147
Query: 66 S----GLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDL 121
+ I +++ + + + L SP IR+
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSH-------------- 193
Query: 122 KSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV 178
+ +N + S+ + + + L + E++++ AL + EV
Sbjct: 194 -----AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 103 bits (257), Expect = 4e-26
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+++ +L+++ SPD L A Q LE+ P F L VL + R +GL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60
Query: 70 LKNNVRAR-----------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
+KN++ ++ + +K L +G + + + ++
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 119 GDLKSWPELLPTLNDMLDSQDYNV 142
+ WPEL+P L + + +
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTE 144
Score = 37.9 bits (87), Expect = 0.001
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+++P +LP +KE + + DW +++ ++A G I E
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 101 bits (251), Expect = 2e-25
Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 16/176 (9%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+++ +L+++ SPD L A Q LE+ P F L VL + R +GL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60
Query: 70 LKNNVRAR-----------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
+KN++ ++ + +K L +G + + + ++
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 120
Query: 119 GDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILK--ETLFHHDWEIKESGILAL 172
+ WPEL+P L + + + L I + + + K + IL
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Score = 39.0 bits (90), Expect = 5e-04
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLK 185
+++P +LP +KE + + DW +++ ++A G I E + LK
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 96.8 bits (240), Expect = 1e-23
Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 42/211 (19%)
Query: 12 QILQLLKES-QSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGL 68
+ QLL+ S SPD I+ + +L++L + F VL + R L+ L
Sbjct: 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAAL 63
Query: 69 ILKNNVRAR------------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
LKN + ++ + P IK L+A+ P I LI IA
Sbjct: 64 TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123
Query: 117 SK-GDLKSWPELLPTLNDMLDSQD------------YNVCE------------LLPVLLP 151
+WPEL+ + D ++ +CE +L+
Sbjct: 124 DIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIA 183
Query: 152 ILKETLF-HHDWEIKESGILALGAIAEVNKS 181
I++ ++ + + AL K+
Sbjct: 184 IVQGAQSTETSKAVRLAALNALADSLIFIKN 214
Score = 40.9 bits (95), Expect = 1e-04
Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 37/202 (18%)
Query: 12 QILQLLKES-QSPDNLIQRAVQHKLEQLNTH------PDFNNYLIFVLTKLTSEDEPTRS 64
++Q++ E+ Q+ D +Q A L ++ + P L + +
Sbjct: 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283
Query: 65 LSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSW 124
+ EF + E P +++ L + +L +
Sbjct: 284 SMTV-----------EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332
Query: 125 PELLPTLNDMLDSQDYNVC----------------ELLPVLLPILKETLFHHDWEIKESG 168
L N+ + D+NV +L +L +++ + +W +E+
Sbjct: 333 ---LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAA 389
Query: 169 ILALGAIAEVNKSIGLKLLCSS 190
++A G+I + +
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQ 411
Score = 33.2 bits (75), Expect = 0.050
Identities = 20/179 (11%), Positives = 48/179 (26%), Gaps = 5/179 (2%)
Query: 4 QPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNT-----HPDFNNYLIFVLTKLTSE 58
P ++ L + + + A L T + T + +
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549
Query: 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
T S+ L E + + + P+ +G+ + K
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609
Query: 119 GDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
++ ++ + S + L P L + L D + + + + I+
Sbjct: 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 85.0 bits (209), Expect = 1e-19
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 10/153 (6%)
Query: 10 LIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
L + + L ES + + L QL T F L+ V+ T+ TR L
Sbjct: 4 LETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALF 60
Query: 70 LKNNVRARF------YEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS 123
KN ++ ++ + P E IK+E + + ++ +G I++IA
Sbjct: 61 FKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR 120
Query: 124 WPELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
WP LL L L + D + +L V I K
Sbjct: 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 64.9 bits (157), Expect = 8e-13
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
+ ++ + QR Q L L HPD + +L S++ T+ IL+
Sbjct: 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILE 86
Query: 72 NNVRARFYEFPPGVSEFIKQECLSAIG---------DPSPLIRATVGILITTIASKGDLK 122
N ++ R+ P E IK+ + I + + + +++ I + K
Sbjct: 87 NVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK 146
Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHD 161
WP + + ++C+ V+L +L E +F
Sbjct: 147 HWPTFISDIVGAS-RTSESLCQNNMVILKLLSEEVFDFS 184
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 63.8 bits (154), Expect = 2e-12
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
+ Q++ + Q+ Q L + +PD +L S + ++ ++ IL
Sbjct: 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILD 74
Query: 72 NNVRARFYEFPPGVSEFIKQECLSAIGD---------PSPLIRATVGILITTIASKGDLK 122
+ ++ P I+ + I + + + I + +
Sbjct: 75 KLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ 134
Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFH 159
+WPE +P L S NVCE ++L +L E +F
Sbjct: 135 NWPEFIPELIGSS-SSSVNVCENNMIVLKLLSEEVFD 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-09
Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 56/184 (30%)
Query: 25 NLIQRAVQHKLEQLNTH-PD--------FNNYLIFVLTKLTSEDEPTRSLSGLIL----- 70
NL Q VQ + + N+H P N V++ P +SL GL L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------PPQSLYGLNLTLRKA 396
Query: 71 -----KNNVRARFYE-FPPGVSEFIKQECLSAIGDP--SPLIRATVGILITTIASKG--- 119
+ R F E + F L + P S L+ ++ +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRF-----L-PVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 120 ---DLKSWPELLPTLNDMLDSQD-YNVCELLPVLLPILKETLFHH--DWE----IKESGI 169
D++ +P + D+ D ++ L + + + + WE K + I
Sbjct: 451 NAKDIQ-----IP----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 170 LALG 173
L G
Sbjct: 502 LDFG 505
Score = 39.3 bits (91), Expect = 5e-04
Identities = 47/252 (18%), Positives = 74/252 (29%), Gaps = 112/252 (44%)
Query: 19 ESQSPDNLIQRA---VQHKLEQLNTHP----------DF-NNYL----IFVLT-KLTSED 59
E +P L+ + V +E +F N YL I L KL E+
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 60 EPTRSLSGLILKNNVRAR---------------------------------------FYE 80
+ T + ++KN + AR F E
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 81 -------FPPGVSEFIKQ--ECLSAIGDPSPLIRATVGILITTIASKG-DLKSW---PEL 127
+ V + IK E L S LIR T+ + ++G ++ W P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETL------SELIRTTLD--AEKVFTQGLNILEWLENPSN 224
Query: 128 LPTLNDMLDSQDYNVCELL--PVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGL- 184
P +DY LL P+ P++ G++ L K +G
Sbjct: 225 TP-------DKDY----LLSIPISCPLI--------------GVIQLAHYVVTAKLLGFT 259
Query: 185 -----KLLCSST 191
L +T
Sbjct: 260 PGELRSYLKGAT 271
Score = 36.6 bits (84), Expect = 0.004
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 23 PDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFP 82
P A Q + EQ FN L ++DEPT + + L+ +F +
Sbjct: 23 PTASFFIASQLQ-EQ------FNKILPEPTEGFAADDEPT-TPAELV------GKFLGY- 67
Query: 83 PGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV 142
VS ++ S +G ++ + D+ + L ND + +
Sbjct: 68 --VSSLVEP---SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 143 CE 144
+
Sbjct: 123 IK 124
Score = 31.6 bits (71), Expect = 0.16
Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 74/208 (35%)
Query: 6 QEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTR-- 63
QE+G+ + L K S++ ++ RA H + F + + + P
Sbjct: 1627 QEQGMG--MDLYKTSKAAQDVWNRADNHFKDTYG----------FSILDIVINN-PVNLT 1673
Query: 64 ----SLSGLILKNNVRARFYEFPPGVSEFIKQ------ECLSAI--GDPSPLIRAT---- 107
G ++ N A +E ++ E ++ L+ AT
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 108 VGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF--HHDWEIK 165
+ + A+ DLKS L+P + F H
Sbjct: 1734 PALTLMEKAAFEDLKSK-------------------GLIP------ADATFAGH------ 1762
Query: 166 ESGIL----ALGAIAEVNKSI--GLKLL 187
S L AL ++A+V SI ++++
Sbjct: 1763 -S--LGEYAALASLADVM-SIESLVEVV 1786
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 53.5 bits (127), Expect = 7e-09
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 11/171 (6%)
Query: 1 MAWQPQEEGLIQILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSE 58
MA Q+++ + P + E+ L + ++
Sbjct: 1 MAMDQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAE-KTQ 59
Query: 59 DEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAI-------GDPSPLIRATVGIL 111
R IL++ V+ R+ ++K + I + I+ + +
Sbjct: 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRI 119
Query: 112 ITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW 162
+ + + + WP++L L+ + Q EL+ +L L E +
Sbjct: 120 VVEMIKREWPQHWPDMLIELDTLS-KQGETQTELVMFILLRLAEDVVTFQT 169
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 50.7 bits (120), Expect = 7e-08
Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 8/160 (5%)
Query: 2 AWQPQEEGLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDE 60
A + + + + L + P+ + Q L Q P ++ +L +
Sbjct: 15 AAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQ--PDKVP 72
Query: 61 PTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPS---PLIRATVGILITTIAS 117
+ L + + + P E +K + + I + ++ + + + ++A
Sbjct: 73 EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132
Query: 118 KGDLKSWPELLPTLNDMLDSQD--YNVCELLPVLLPILKE 155
+WP + + + ++D + LL +L
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 50.7 bits (120), Expect = 8e-08
Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 8/158 (5%)
Query: 12 QILQLLKESQSP--DNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+ ++ + P +I++ + L + + ++ T TR +
Sbjct: 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQT 66
Query: 70 LKNNVRARFYEFPPGVSEFIKQECLSAI-----GDPSPLIRATVGILITTIASKGDLKSW 124
L VR E + I+ S I D I V L+T + + +W
Sbjct: 67 LSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW 126
Query: 125 PELLPTLNDMLDSQDY-NVCELLPVLLPILKETLFHHD 161
+ +L ++ + +L + + +
Sbjct: 127 NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSL 164
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 47.3 bits (111), Expect = 8e-07
Identities = 19/149 (12%), Positives = 53/149 (35%), Gaps = 7/149 (4%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
++ + + ++ Q L P + ++ + + + + L
Sbjct: 8 RLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQ--LGKSQEVQFFGAITLH 65
Query: 72 NNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIAS--KGDLKSWPELLP 129
+ + ++E PP E +KQ+ L +I + + + L ++ + L WP +
Sbjct: 66 SKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIE 125
Query: 130 TLNDML---DSQDYNVCELLPVLLPILKE 155
+ + + + L ++L +L
Sbjct: 126 EVINTFQNQRMPNVSADVQLWIMLEVLTA 154
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 43.6 bits (101), Expect = 2e-05
Identities = 16/107 (14%), Positives = 40/107 (37%)
Query: 51 VLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
+L K+TS D+ R ++ L ++ + + + L + D + ++
Sbjct: 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 70
Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETL 157
+ + SK ++ TL + S + ++ + L + L
Sbjct: 71 CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 117
Score = 42.0 bits (97), Expect = 6e-05
Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTH---PDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+ +LK + + +Q L L + + + T + S+ E R +S +
Sbjct: 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIG 109
Query: 70 LKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLP 129
LK + S + + + G L + IA + D+ E L
Sbjct: 110 LKTVIGEL-------------PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156
Query: 130 TLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLL 187
+ DML Q + P +L L L +++ I+ALG + +I L
Sbjct: 157 IMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL 214
Score = 32.8 bits (73), Expect = 0.077
Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 21/152 (13%)
Query: 15 QLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNV 74
LLK + + + V L +L T D L + L S RS +K +
Sbjct: 935 LLLKHCECAEEGTRNVVAECLGKL-TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTI 993
Query: 75 RARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDM 134
P + I + L + DP +R L T N
Sbjct: 994 SDHPQPIDPLLKNCI-GDFLKTLEDPDLNVRRVA-------------------LVTFNSA 1033
Query: 135 LDSQDYNVCELLPVLLPILKETLFHHDWEIKE 166
++ + +LL +LP L I+E
Sbjct: 1034 AHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Score = 29.3 bits (64), Expect = 0.88
Identities = 25/189 (13%), Positives = 51/189 (26%), Gaps = 25/189 (13%)
Query: 10 LIQILQLLKESQSPDN------LIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTR 63
+ +L L ++ S I + ++ + + V+ +D+ R
Sbjct: 215 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELR 272
Query: 64 SLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS 123
++ VR E P VS I DP+ A GD
Sbjct: 273 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 332
Query: 124 WPELLP-----------------TLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKE 166
L+ ++ ++ + E + P L + +K
Sbjct: 333 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 167 SGILALGAI 175
A ++
Sbjct: 393 DVFHAYLSL 401
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 42.3 bits (99), Expect = 4e-05
Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 24/198 (12%)
Query: 5 PQEEGLIQILQLLKE-SQSPDNLIQRAVQHKLEQLNTH---PDFNNYLIFVLTKLTSEDE 60
PQE+ ++ L++ ++ ++ V K +L L+ L + E
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 61 P-TRSLSGLILKNNVRARFYEFPPGVS-EFIKQECLSAIGDPSPLIRATVGILITTIASK 118
R+ + +K + V I + D + +++ + +I ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354
Query: 119 -GDLKSWPELLPTLNDMLDSQDYNVC-----------------ELLPVLLPILKETLFHH 160
G + LLP L + V +L LLP + E
Sbjct: 355 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA 414
Query: 161 DWEIKESGILALGAIAEV 178
W ++ + I + +A
Sbjct: 415 KWRVRLAIIEYMPLLAGQ 432
Score = 34.6 bits (79), Expect = 0.016
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 94 LSAIGDPSPLIRATVGILITTIASK-GDLKSWPELLPTLNDMLDSQDYNVCEL------- 145
+ + + +R ++TIA G ++ ELLP L D + +D + L
Sbjct: 16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTF 75
Query: 146 ---------LPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+ LLP L+ + +++ + +L AI+
Sbjct: 76 TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116
Score = 33.8 bits (77), Expect = 0.023
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 82 PPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-WPELLPTLNDMLDSQDY 140
I + L+ GDP+ L R T I ++ +LPT+ M
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 141 NV----CELLPVL-------------LPILKETLFHHDWEIKESGILALGAIA 176
NV + L + PIL++ D ++K AL ++
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 33.5 bits (76), Expect = 0.034
Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 27/197 (13%)
Query: 4 QPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTH---PDFNNYLIFVLTKLTSEDE 60
E L+ + + + P+ ++ + L+ +N + L+ + +L + +
Sbjct: 358 DNTIEHLLPLFLAQLKDECPE--VRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 61 P-TRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK- 118
R + EF E + C++ + D IR + + K
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 119 GDLKSWPELLPTLNDMLDSQDYNV-----------------CELLPVLLPILKETLFHHD 161
G + ++P + M +Y +LP +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV 532
Query: 162 WEIKESGILALGAIAEV 178
++ + +L I +
Sbjct: 533 ANVRFNVAKSLQKIGPI 549
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 33.8 bits (78), Expect = 0.019
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 94 LSAIGDPSPLIRAT-VGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCEL------- 145
+ + D S +R L G + + L L +D V
Sbjct: 20 IKNLQDDSYYVRRAAAYAL-------GKIGD-ERAVEPLIKALKDEDAWVRRAAADALGQ 71
Query: 146 --LPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+ L + L D +++S +ALG I +
Sbjct: 72 IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105
Score = 31.5 bits (72), Expect = 0.10
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL----- 146
A+ D +R + + GD + L L +D+ V L
Sbjct: 84 ALKDEDGWVRQSA---AVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136
Query: 147 PVLLPILKETLFHHDWEIKESGILALGAIA 176
+ L + L D +++S ALG I
Sbjct: 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG 166
Score = 30.0 bits (68), Expect = 0.35
Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL--- 146
+ A+ D +R + G++ + L L +D V + L
Sbjct: 113 IKALKDEDWFVRIAA------AFALGEIGD-ERAVEPLIKALKDEDGWVRQSAADALGEI 165
Query: 147 --PVLLPILKETLFHHDWEIKESGILALGAIAEV 178
+ +++ ++ + L +
Sbjct: 166 GGERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 33.5 bits (77), Expect = 0.023
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCEL-------- 145
+ + D S +R + GD + L L +D V
Sbjct: 25 IKNLQDDSYYVRRA---AAYALGKIGD----ERAVEPLIKALKDEDAWVRRAAADALGQI 77
Query: 146 -LPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+ L + L D +++S +ALG I +
Sbjct: 78 GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110
Score = 33.1 bits (76), Expect = 0.035
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 96 AIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL----- 146
A+ D +R + + GD + L L +D+ V L
Sbjct: 89 ALKDEDGWVRQSA---AVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141
Query: 147 PVLLPILKETLFHHDWEIKESGILALGAIA 176
+ L + L D +++S ALG I
Sbjct: 142 ERAVEPLIKALKDEDGWVRQSAADALGEIG 171
Score = 31.2 bits (71), Expect = 0.15
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 16/95 (16%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL--- 146
+ A+ D +R + GD + L L +D V + L
Sbjct: 118 IKALKDEDWFVRIAA---AFALGEIGD----ERAVEPLIKALKDEDGWVRQSAADALGEI 170
Query: 147 --PVLLPILKETLFHHDWEIKESGILALGAIAEVN 179
+ +++ ++ + L N
Sbjct: 171 GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 32.8 bits (75), Expect = 0.052
Identities = 21/176 (11%), Positives = 50/176 (28%), Gaps = 28/176 (15%)
Query: 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK--LTSEDEPTRSLSGLIL 70
++ + + + L Q+ + + +L L + R+ +
Sbjct: 59 AIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIEST 115
Query: 71 KNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPT 130
A+ + P S I ++ D S +R + + +P
Sbjct: 116 -----AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRAT------AFAISVIND-KATIPL 163
Query: 131 LNDMLDSQDYNV-----------CELLPVLLPILKETLFHHDWEIKESGILALGAI 175
L ++L + +V + E L + E++ I+ L
Sbjct: 164 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
Score = 31.7 bits (72), Expect = 0.11
Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 24/197 (12%)
Query: 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTK-LTSED 59
+ Q ++ ++ +LL ++L + + L+ + + + + ++
Sbjct: 16 LYNQCKKLNDDELFRLLD---DHNSLKRISSARVLQLRG-----GQDAVRLAIEFCSDKN 67
Query: 60 EPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKG 119
R + IL + + V + L+ D S +RAT K
Sbjct: 68 YIRRDIGAFILGQIKICK--KCEDNVFNILNNMALN---DKSACVRATAIESTAQRCKKN 122
Query: 120 DLKSWPELLPTLNDMLDSQDYNV----CELL-----PVLLPILKETLFHHDWEIKESGIL 170
+ S P+++ + NV + +P+L L + +++
Sbjct: 123 PIYS-PKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAF 181
Query: 171 ALGAIAEVNKSIGLKLL 187
A+ N I +
Sbjct: 182 AININKYDNSDIRDCFV 198
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 32.0 bits (72), Expect = 0.080
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 86 SEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC-- 143
E + ++ + + D + +I IA + + +L L +L +
Sbjct: 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 144 --------------ELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKS 181
EL+ ++P+L D + K + AL IA+ N
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM 140
Score = 30.1 bits (67), Expect = 0.34
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC---------- 143
+ + V + IA ++ ML S++
Sbjct: 113 FANYRIGDEKTKINVSYALEEIAKANP-MLMASIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 144 -----ELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSI 182
+ + LP + L D ++ S + AL +A +N +
Sbjct: 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 31.6 bits (71), Expect = 0.12
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 22/165 (13%)
Query: 29 RAVQHKLEQLNTHPDFNNY----LIFVLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPG 84
++V+ ++L T +Y +L + + L + G
Sbjct: 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142
Query: 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVCE 144
+E + ++ L + +P IR L ++ + D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNA---------------SMKEEKDGYSTLQRY 187
Query: 145 LLPVLLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLLCS 189
L ++PI+ + + I+ G + + K G+
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILI---KIFGMNTFVK 229
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 30.0 bits (68), Expect = 0.21
Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 16/89 (17%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL--- 146
L ++ + IR G+ + + L +L+ V L
Sbjct: 48 LESLSNEDWRIRGAA------AWIIGNFQD-ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
Query: 147 --PVLLPILKETLFHHDWEIKESGILALG 173
+ +++ ++ + L
Sbjct: 101 GGERVRAAMEKLAETGTGFARKVAVNYLE 129
Score = 27.6 bits (62), Expect = 1.6
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 94 LSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNV----CELL--- 146
S + D + +R V T ++ GD E L + L ++D+ + ++
Sbjct: 18 GSHMADENKWVRRDV---STALSRMGD-----EAFEPLLESLSNEDWRIRGAAAWIIGNF 69
Query: 147 --PVLLPILKETLFHHDWEIKESGILALGAIA 176
+ L + L ++ +L I
Sbjct: 70 QDERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 30.4 bits (68), Expect = 0.28
Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 24/173 (13%)
Query: 10 LIQILQLLKESQSPDN--LIQRAVQHKLEQLNTH--PDFNNYLIFVLTKLTSEDEPTRSL 65
++ LK+ + D+ ++ L L F+NY + L E +
Sbjct: 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL---EKFKEK 110
Query: 66 SGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP 125
++ A + E ++ + ++ + +P +++ + I ++ +
Sbjct: 111 KPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170
Query: 126 ELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV 178
+ +LL +L L +TL D +++S ALG + ++
Sbjct: 171 K-----------------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206
Score = 28.1 bits (62), Expect = 1.6
Identities = 14/123 (11%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Query: 13 ILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKN 72
+ LL++ + + A++ ++ + ++ L++++ +S + L +
Sbjct: 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIAR 159
Query: 73 NV-RARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTL 131
+ R + + + + + + +P P +R + + T+ K+ LL +
Sbjct: 160 ALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
Query: 132 NDM 134
+ +
Sbjct: 220 DPL 222
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 29.3 bits (66), Expect = 0.72
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 41 HPDFNNYLIFVLTK---LTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAI 97
D + F+++ T D + + N + EFP + ++++ +
Sbjct: 93 GSDPDTRESFLISAADPFTESDLAFIEGEAVHI-NPLWYG--EFPEDLIPVLRRKVMFLS 149
Query: 98 GDPSPLIRATVGILITTIASKGDLKSWPELLP 129
D +R + + + L
Sbjct: 150 ADAQGFVRVPENEKLVYRDWEMK----EKYLK 177
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 29.5 bits (65), Expect = 0.86
Identities = 21/188 (11%), Positives = 50/188 (26%), Gaps = 12/188 (6%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
+ L +QS L + Q+ + DF Y++ +L +G +
Sbjct: 28 KFFTTLNTAQSKV-LKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARIL 86
Query: 72 NNVRARFYEFPPGVSEFIKQE-----------CLSAIGDPSPLIRATVGILITTIASKGD 120
++ +F E+ + + A + + +
Sbjct: 87 RSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFL 146
Query: 121 LKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNK 180
+ D E + + + L ++W + LA A+
Sbjct: 147 SDIDFKAGSGEAIKRHKVDERPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEID 206
Query: 181 SIGLKLLC 188
+ G +
Sbjct: 207 NGGDIQIR 214
Score = 26.4 bits (57), Expect = 7.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 149 LLPILKETLFHHDWEIKESGILALGAIAEV 178
++ L L DW+++ SG++ALG + E
Sbjct: 264 IIEQLVGFLDSGDWQVQFSGLIALGYLKEF 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 32/57 (56%)
Query: 52 LTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATV 108
L KL + SL + Y SA P+ I+AT+
Sbjct: 22 LKKLQA------SL-----------KLYA--DD----------SA---PALAIKATM 46
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown
function, PSI, protein structur initiative; 2.20A
{Salmonella typhi} SCOP: a.4.5.74
Length = 135
Score = 27.0 bits (59), Expect = 2.5
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 11 IQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEP--TRSLSGL 68
++ S ++ + VQ E++ H ++ + + L+G
Sbjct: 52 LKSHSRSCSSGLKESGRKEQVQAAFEKMRKHRVSDSRRFWQCCLYEEPGGRGRYKKLTGY 111
Query: 69 ILKNNVRARFYEFPP 83
++K + FP
Sbjct: 112 LIKMSEIYANGNFPD 126
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 27.7 bits (61), Expect = 2.6
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 93 CLSAIGDPSPLIR-----------------ATVGILITTIASKGDLKSWPE---LLPTLN 132
+ G+ I+ A +L + + W E +L +
Sbjct: 100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFS 159
Query: 133 DMLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEV--NKSI 182
M+D+ V +P L+P+L ET++ E+K + A+ E NK I
Sbjct: 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 26.5 bits (59), Expect = 6.4
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 144 ELLPVLLPILKETLFHHDWEIKESG-----ILALGAIAEVNKSIGLKLLC 188
E ++ + + SG I+ G ++K L+ L
Sbjct: 192 EESAQIMKAIADYKTSQRLVGTASGFGYIDIITKG----LHKGWALQQLL 237
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 25.9 bits (58), Expect = 7.6
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 142 VCELLPVLLPILKETLFHHDWEIKESGIL 170
E L P+L+ETL + L
Sbjct: 73 AIEKDLRLRPVLEETLSGLPVRLVFQDAL 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 8.7
Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 58/211 (27%)
Query: 3 W-QPQEEGLIQILQLL----------KESQSPDNLIQRAVQHKLEQLNT-HPDF-NNYLI 49
W + ++ ++ L KES I ++ KLE H ++Y I
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 50 FVLTKLTSEDEPTRSLSGLI-------LKNNVRA-RFYEFPPGVS--EFIKQECLSAIGD 99
S+D L LKN R F F++Q+
Sbjct: 456 --PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK------- 506
Query: 100 PSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYN--VCELLPV---LLPILK 154
IR D +W LN + + Y +C+ P L+ +
Sbjct: 507 ----IRH-------------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 155 ETLFHHDWEI---KESGILALGAIAEVNKSI 182
+ L + + K + +L + +AE +++I
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAE-DEAI 579
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,851,101
Number of extensions: 157613
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 68
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)