RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9906
(191 letters)
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 147 bits (370), Expect = 9e-42
Identities = 112/156 (71%), Positives = 126/156 (80%)
Query: 3 WQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPT 62
W+P E+GL QILQLLKESQSPD IQR VQ KLEQLN +PDFNNYLIFVLTKL SEDEPT
Sbjct: 3 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPT 62
Query: 63 RSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLK 122
RSLSGLILKNNV+A F FP GV++FIK ECL+ IGD SPLIRATVGILITTIASKG+L+
Sbjct: 63 RSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ 122
Query: 123 SWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLF 158
+WP+LLP L +LDS+DYN CE L + E
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 158
Score = 27.0 bits (58), Expect = 1.8
Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 25/195 (12%)
Query: 8 EGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTS-EDEPTRSLS 66
+ + + + + IQ + +++ N D + L +L L+S
Sbjct: 541 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 600
Query: 67 GLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGD-----L 121
R + P L++ +A L
Sbjct: 601 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 660
Query: 122 KSWPELLPTLNDMLDSQDYNVCE-------------------LLPVLLPILKETLFHHDW 162
+ +L + + + V + + +PIL L
Sbjct: 661 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI 720
Query: 163 EIKESGILALGAIAE 177
+ + A+G I+
Sbjct: 721 SVCNNATWAIGEISI 735
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 92.1 bits (227), Expect = 1e-22
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+++ +L+++ SPD L A Q LE+ P F L VL + R +GL
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 60
Query: 70 LKNNVRA-----------RFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
+KN++ + R+ +K L +G + + + ++
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAE 120
Query: 119 GDLKSWPELLPTLNDMLDSQDYNV 142
+ WPEL+P L + + +
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTE 144
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 90.4 bits (223), Expect = 5e-22
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 10/151 (6%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILK 71
+ + L ES + + L QL T F L+ V+ T+ TR L K
Sbjct: 6 TVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFK 62
Query: 72 NNVRARFYE------FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWP 125
N ++ ++ + P E IK+E + + ++ +G I++IA WP
Sbjct: 63 NFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP 122
Query: 126 ELLPTLNDMLDSQDYNVCE-LLPVLLPILKE 155
LL L L + D + +L V I K
Sbjct: 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 81.0 bits (198), Expect = 8e-19
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 16/174 (9%)
Query: 12 QILQLLKESQSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGLI 69
+++ +L+++ SPD L A Q LE+ P F L VL + R +GL
Sbjct: 1 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQ 59
Query: 70 LKNNVRARFYE-----------FPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK 118
+KN++ ++ + +K L +G + + + ++
Sbjct: 60 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119
Query: 119 GDLKSWPELLPTLNDMLDS--QDYNVCELLPVLLPILKETLFHHDWEIKESGIL 170
+ WPEL+P L + + ++ E + + + + + K + IL
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL 173
Score = 35.9 bits (81), Expect = 0.002
Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 54/231 (23%)
Query: 1 MAWQPQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLT---- 56
E L I+Q +++ + +N+ A L L + +
Sbjct: 164 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 223
Query: 57 ---SEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILIT 113
D R + L + + + + + A+ + +
Sbjct: 224 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 283
Query: 114 TIASKGD------------------------LKSWPELLPTLNDMLDSQDYNVC------ 143
+ + + L+P L L QD N
Sbjct: 284 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 343
Query: 144 -----------------ELLPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+++P +LP +KE + + DW +++ ++A G I E
Sbjct: 344 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 394
Score = 27.1 bits (58), Expect = 1.7
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 20/75 (26%)
Query: 124 WPELLPTLNDMLDSQDYNVCE--------------------LLPVLLPILKETLFHHDWE 163
P +LP + + + + D+ + L+ +P L E +
Sbjct: 363 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 422
Query: 164 IKESGILALGAIAEV 178
++++ +G I E+
Sbjct: 423 VRDTAAWTVGRICEL 437
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 81.0 bits (198), Expect = 1e-18
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 17/144 (11%)
Query: 12 QILQLLKES-QSPDNLIQRAVQHKLEQL--NTHPDFNNYLIFVLTKLTSEDEPTRSLSGL 68
+ QLL+ S SPD I+ + +L++L + F VL + R L+ L
Sbjct: 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAAL 63
Query: 69 ILKNNVRAR------------FYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIA 116
LKN + ++ + P IK L+A+ P I LI IA
Sbjct: 64 TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123
Query: 117 SK-GDLKSWPELLPTLNDMLDSQD 139
+WPEL+ + D ++
Sbjct: 124 DIELPHGAWPELMKIMVDNTGAEQ 147
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 39.0 bits (89), Expect = 2e-04
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 94 LSAIGDPSPLIRATVGILITTIASK-GDLKSWPELLPTLNDMLDSQDYNVCEL------- 145
+ + + +R ++TIA G ++ ELLP L D + +D + L
Sbjct: 16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTF 75
Query: 146 ---------LPVLLPILKETLFHHDWEIKESGILALGAIAE 177
+ LLP L+ + +++ + +L AI+
Sbjct: 76 TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISH 116
Score = 29.0 bits (63), Expect = 0.39
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 18/110 (16%)
Query: 85 VSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKS-----WPELLPTLNDMLDSQD 139
I + L+ GDP+ L R T I ++ P +L D + +
Sbjct: 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536
Query: 140 YNVCELLPVL-------------LPILKETLFHHDWEIKESGILALGAIA 176
+NV + L + PIL++ D ++K AL ++
Sbjct: 537 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 38.6 bits (88), Expect = 3e-04
Identities = 16/112 (14%), Positives = 40/112 (35%)
Query: 51 VLTKLTSEDEPTRSLSGLILKNNVRARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGI 110
+L K+TS D+ R ++ L ++ + + + L + D + ++
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 111 LITTIASKGDLKSWPELLPTLNDMLDSQDYNVCELLPVLLPILKETLFHHDW 162
+ + SK ++ TL + S + ++ + L + L
Sbjct: 68 CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119
Score = 35.1 bits (79), Expect = 0.004
Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 17/187 (9%)
Query: 16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75
+L+ SP ++ A + L ++ + YL FVL ++TS+ + L LK +
Sbjct: 858 ILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEITSQPKRQYLLLH-SLKEIIS 915
Query: 76 ARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLND-- 133
+ E I L R V + + P L L
Sbjct: 916 SASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGS 975
Query: 134 -------------MLDSQDYNVCELLPVLLPILKETLFHHDWEIKESGILALGAIAEVNK 180
+ + LL + +TL D ++ ++ + A
Sbjct: 976 SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035
Query: 181 SIGLKLL 187
S+ LL
Sbjct: 1036 SLIRDLL 1042
Score = 32.0 bits (71), Expect = 0.047
Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 16 LLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRSLSGLILKNNVR 75
LLK + + + V L +L T D L + L S RS +K +
Sbjct: 933 LLKHCECAEEGTRNVVAECLGKL-TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTIS 991
Query: 76 ARFYEFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDML 135
P + I L + DP +R L T N
Sbjct: 992 DHPQPIDPLLKNCIGD-FLKTLEDPDLNVRRVA-------------------LVTFNSAA 1031
Query: 136 DSQDYNVCELLPVLLPIL 153
++ + +LL +LP L
Sbjct: 1032 HNKPSLIRDLLDTVLPHL 1049
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 0.52
Identities = 11/107 (10%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 97 IGDPSPLIRATVGILITTIASKGDLKSWPELLPTLNDMLDSQDYNVC------------- 143
+ +P I + S+ +++ +P + D+ D
Sbjct: 112 LASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 171
Query: 144 -ELLPV--LLPILKETLFHHDWEIKESGILALGAIAEVNKSIGLKLL 187
+L+P+ + L + + + +A+ N +
Sbjct: 172 PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 218
Score = 25.5 bits (55), Expect = 5.1
Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 24/189 (12%)
Query: 5 PQEEGLIQILQLLKESQSPDNLIQRAVQHKLEQLNTHPDFNNYLIFVLTKLTSEDEPTRS 64
P +++L+LL+ P++ AV+ +L + L S+ +
Sbjct: 245 PAPWLSVKLLRLLQCYPPPED---PAVRGRLTEC-----LETILNKAQEPPKSKKVQHSN 296
Query: 65 LSGLILKNNVRARFY-EFPPGVSEFIKQECLSAIGDPSPLIRATVGILITTIASK-GDLK 122
+L + + + P + + + +R + T+AS +
Sbjct: 297 AKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE 356
Query: 123 SWPELLPTLNDMLDSQDYNVCEL--------------LPVLLPILKETLFHHDWEIKESG 168
+ + T+ + L ++ ++ + L D+ I+E
Sbjct: 357 AVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEI 416
Query: 169 ILALGAIAE 177
+L + +AE
Sbjct: 417 VLKVAILAE 425
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,658
Number of extensions: 29085
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 21
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)