Query psy9907
Match_columns 116
No_of_seqs 112 out of 778
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:42:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03098 An_peroxidase: Animal 100.0 2.2E-39 4.9E-44 272.8 8.5 112 2-114 148-270 (530)
2 PLN02283 alpha-dioxygenase 100.0 3.5E-39 7.5E-44 277.2 8.3 107 2-114 213-319 (633)
3 KOG2408|consensus 100.0 4.5E-39 9.7E-44 279.6 9.0 114 2-115 308-438 (719)
4 PF10929 DUF2811: Protein of u 79.9 1.1 2.4E-05 28.0 1.3 15 81-95 19-33 (57)
5 KOG2948|consensus 51.5 24 0.00051 29.0 3.9 39 76-114 151-198 (327)
6 PRK14102 nifW nitrogenase stab 41.6 71 0.0015 22.2 4.6 44 62-107 33-76 (105)
7 PF11522 Pik1: Yeast phosphati 41.3 16 0.00034 22.3 1.1 18 92-110 4-21 (51)
8 PF12758 DUF3813: Protein of u 38.2 23 0.00049 22.5 1.5 12 89-100 3-14 (63)
9 PF03206 NifW: Nitrogen fixati 37.2 87 0.0019 21.6 4.4 44 62-108 33-76 (105)
10 PF02093 Gag_p30: Gag P30 core 34.2 21 0.00046 27.7 1.1 25 76-100 32-70 (211)
11 PF02477 Nairo_nucleo: Nucleoc 34.1 79 0.0017 26.8 4.5 34 70-103 196-259 (442)
12 PF02845 CUE: CUE domain; Int 32.4 42 0.00092 18.7 1.9 21 74-94 3-23 (42)
13 PRK09651 RNA polymerase sigma 31.7 83 0.0018 22.2 3.8 35 61-95 9-44 (172)
14 PF10835 DUF2573: Protein of u 31.3 34 0.00075 22.7 1.6 32 73-106 38-69 (82)
15 PF02757 YLP: YLP motif; Inte 29.1 21 0.00045 14.4 0.2 7 109-115 2-8 (9)
16 PF14730 DUF4468: Domain of un 27.7 55 0.0012 21.3 2.1 23 83-105 7-29 (91)
17 COG5057 LAG1 Phosphotyrosyl ph 26.7 33 0.00073 28.3 1.1 46 69-115 255-305 (353)
18 PF03690 UPF0160: Uncharacteri 26.6 1.2E+02 0.0026 24.8 4.3 41 74-114 144-194 (318)
19 COG4286 Uncharacterized conser 25.1 1.2E+02 0.0025 24.9 3.9 38 75-114 145-190 (306)
20 KOG0030|consensus 23.2 58 0.0013 24.0 1.7 40 75-114 33-74 (152)
21 PRK00810 nifW nitrogenase stab 23.0 2.1E+02 0.0046 20.0 4.5 42 62-107 37-78 (113)
22 PF08491 SE: Squalene epoxidas 22.6 1.8E+02 0.004 23.3 4.6 67 27-94 112-178 (276)
23 PF04286 DUF445: Protein of un 22.6 2.2E+02 0.0048 22.2 5.1 44 66-109 305-348 (367)
24 PF09957 DUF2191: Uncharacteri 21.4 61 0.0013 19.0 1.3 13 88-100 8-20 (47)
25 PF13456 RVT_3: Reverse transc 20.4 65 0.0014 19.4 1.3 13 70-82 71-83 (87)
26 KOG1566|consensus 20.4 2.7E+02 0.0058 23.3 5.1 42 65-106 295-336 (342)
27 PF07872 DUF1659: Protein of u 20.4 75 0.0016 18.5 1.5 17 79-95 29-45 (47)
No 1
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=2.2e-39 Score=272.81 Aligned_cols=112 Identities=34% Similarity=0.408 Sum_probs=91.3
Q ss_pred ccccCccccCCHHHHhhhhcCCCcCccceec------C-Ccccccccccc----ceeeecCCcccccchhHHHHHHHHHh
Q psy9907 2 LLIPSVLYISGDARANENTHLTSMHLLLARQ------H-NTLHLSFFSVV----FIRYKRGDARANENTHLTSMHLLLAR 70 (116)
Q Consensus 2 ~~~~S~iYGs~~~~~~~LRs~~~~~g~l~~~------~-~g~~lp~~~~~----~~~f~~Gd~R~ne~~~l~~~h~lf~R 70 (116)
.||+|+||||+++++++||+ ..++|+|+++ . ++..+|...+. ..||++||.|+||+|+|+++||+|+|
T Consensus 148 ~lD~S~vYGs~~~~~~~LR~-~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~~~f~~GD~R~ne~~~l~~lhtlflR 226 (530)
T PF03098_consen 148 YLDLSQVYGSSEEQARRLRS-SFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGCRCFLAGDPRVNENPGLTALHTLFLR 226 (530)
T ss_dssp SSS-HHHH-SSHHHHHHTBE-SSTTTEB--ETSSEEBBTTBES--B-TSCSSGHHGSB-TSSTTTTSBHHHHHHHHHHHH
T ss_pred eeecccccCCCHHHHHHhhc-chhhhhhhcccccccccCCCCCCCCCcccccccccccccccccccchHHHHHHHHHHHH
Confidence 48999999999999999999 2357888862 1 23356654421 26899999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhhhcccccc
Q psy9907 71 QHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTSLENYLC 114 (116)
Q Consensus 71 eHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~~~e~lp~ 114 (116)
||||||++|++.||+|+||+||||||+||+|+||||||+||||+
T Consensus 227 eHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~ 270 (530)
T PF03098_consen 227 EHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPA 270 (530)
T ss_dssp HHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999996
No 2
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=3.5e-39 Score=277.21 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=97.4
Q ss_pred ccccCccccCCHHHHhhhhcCCCcCccceecCCccccccccccceeeecCCcccccchhHHHHHHHHHhhhHHHHHHHHh
Q psy9907 2 LLIPSVLYISGDARANENTHLTSMHLLLARQHNTLHLSFFSVVFIRYKRGDARANENTHLTSMHLLLARQHNTLARQLVT 81 (116)
Q Consensus 2 ~~~~S~iYGs~~~~~~~LRs~~~~~g~l~~~~~g~~lp~~~~~~~~f~~Gd~R~ne~~~l~~~h~lf~ReHN~ia~~L~~ 81 (116)
-||+|+||||+++++++||+|. +|+|+.+.++ .+|.. ...||++||.| |++|||+++||||+|||||||++|++
T Consensus 213 ~lD~S~IYGss~~~~~~LRtf~--~GkLk~~~~~-~l~~~--~~~~~~~Gd~r-n~~pGL~~lhtLF~REHNrIad~L~~ 286 (633)
T PLN02283 213 WWDGSVIYGSNEKGLRRVRTFK--DGKLKISEDG-LLLHD--EDGIPISGDVR-NSWAGVSLLQALFVKEHNAVCDALKE 286 (633)
T ss_pred eeecccccCCCHHHHHhhhCCC--CCccCcCCCC-CCCCC--ccCCcccCccc-cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999984 7899886555 34443 24599999999 89999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHHHHHHhhhcccccc
Q psy9907 82 LNPDWDDETVYQESRRILGAQMQHVTSLENYLC 114 (116)
Q Consensus 82 ~~p~w~de~lfq~AR~iv~a~~q~I~~~e~lp~ 114 (116)
+||+|+||+|||+||+||+|+||||||+||||+
T Consensus 287 ~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~ 319 (633)
T PLN02283 287 EYPDFDDEELYRHARLVTSAVIAKIHTIDWTVE 319 (633)
T ss_pred hCCCCcHHHHHHHHHHHHHHHheeeeeeeccHH
Confidence 999999999999999999999999999999996
No 3
>KOG2408|consensus
Probab=100.00 E-value=4.5e-39 Score=279.55 Aligned_cols=114 Identities=37% Similarity=0.511 Sum_probs=103.5
Q ss_pred ccccCccccCCHHHHhhhhcCCCcCccceec-----CCcccccccc------------ccceeeecCCcccccchhHHHH
Q psy9907 2 LLIPSVLYISGDARANENTHLTSMHLLLARQ-----HNTLHLSFFS------------VVFIRYKRGDARANENTHLTSM 64 (116)
Q Consensus 2 ~~~~S~iYGs~~~~~~~LRs~~~~~g~l~~~-----~~g~~lp~~~------------~~~~~f~~Gd~R~ne~~~l~~~ 64 (116)
-||+|+||||+++.+++||.|+++.|+|+.+ .++..+|+.. ....||.+||.|+|++|+|+++
T Consensus 308 ~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~~~~pgL~~~ 387 (719)
T KOG2408|consen 308 FLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGDERANEQPGLAAL 387 (719)
T ss_pred cccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCccccccCcchHHH
Confidence 3899999999999999999998878999876 2344566653 3478999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhhhccccccC
Q psy9907 65 HLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTSLENYLCD 115 (116)
Q Consensus 65 h~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~~~e~lp~~ 115 (116)
||+|+|||||||.+|+..||+|+||+||||||||++|++|||||+||||..
T Consensus 388 hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~i 438 (719)
T KOG2408|consen 388 HTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKL 438 (719)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999963
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=79.88 E-value=1.1 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.827 Sum_probs=13.5
Q ss_pred hhCCCCCchhhHHHH
Q psy9907 81 TLNPDWDDETVYQES 95 (116)
Q Consensus 81 ~~~p~w~de~lfq~A 95 (116)
+.+|+||..+|||.|
T Consensus 19 e~hP~WDQ~Rl~~aA 33 (57)
T PF10929_consen 19 ETHPNWDQYRLFQAA 33 (57)
T ss_pred HcCCCchHHHHHHHH
Confidence 459999999999998
No 5
>KOG2948|consensus
Probab=51.49 E-value=24 Score=29.03 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=28.8
Q ss_pred HHHHHhhCCCCCc------hhhHHHHHHHHHHHHH-Hhhhc--ccccc
Q psy9907 76 ARQLVTLNPDWDD------ETVYQESRRILGAQMQ-HVTSL--ENYLC 114 (116)
Q Consensus 76 a~~L~~~~p~w~d------e~lfq~AR~iv~a~~q-~I~~~--e~lp~ 114 (116)
...+...||+|.+ ++-||+|=.+++-++- .+.+. -|||+
T Consensus 151 ~~rv~~~N~~w~e~~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPa 198 (327)
T KOG2948|consen 151 SHRVGRFNPDWNEDSDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPA 198 (327)
T ss_pred HHHHhhcCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence 3567778999983 7899999999988773 33333 58876
No 6
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=41.59 E-value=71 Score=22.16 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhh
Q psy9907 62 TSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107 (116)
Q Consensus 62 ~~~h~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~ 107 (116)
.-+|+| -|.|.+|+ ++....|.-++++++..+|.....-||.-+
T Consensus 33 ~RLHIL-krf~qyl~-~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~ 76 (105)
T PRK14102 33 NRLHIL-KQFSQLIA-EIDANFPDLSEEEKLEKYQLALEEAYQVFL 76 (105)
T ss_pred HHHHHH-HHHHHHHH-HhccccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 446754 67888776 344456778999999999999988887543
No 7
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=41.32 E-value=16 Score=22.25 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q psy9907 92 YQESRRILGAQMQHVTSLE 110 (116)
Q Consensus 92 fq~AR~iv~a~~q~I~~~e 110 (116)
||.+|+++ =.+|+|.|+.
T Consensus 4 Fqv~RRv~-NklQ~ilFn~ 21 (51)
T PF11522_consen 4 FQVCRRVI-NKLQHILFNT 21 (51)
T ss_dssp THHHHHHH-HHHT--SS-S
T ss_pred hHHHHHHH-HHHHHHHhCC
Confidence 89999874 5789998874
No 8
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=38.21 E-value=23 Score=22.52 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHH
Q psy9907 89 ETVYQESRRILG 100 (116)
Q Consensus 89 e~lfq~AR~iv~ 100 (116)
.+|||+||..|.
T Consensus 3 N~LFqqAr~aV~ 14 (63)
T PF12758_consen 3 NRLFQQARDAVE 14 (63)
T ss_pred chHHHHHHHHHH
Confidence 579999999997
No 9
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=37.20 E-value=87 Score=21.61 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhhh
Q psy9907 62 TSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS 108 (116)
Q Consensus 62 ~~~h~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~~ 108 (116)
.-+|+| -|.|.+++.. ...+.-+++++++.+|....--||..+-
T Consensus 33 ~RLHIL-krF~~yL~~~--~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 33 NRLHIL-KRFGQYLRAA--DFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred hhHHHH-HHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 346644 6888888865 2237789999999999999888887654
No 10
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=34.17 E-value=21 Score=27.71 Aligned_cols=25 Identities=36% Similarity=0.690 Sum_probs=15.6
Q ss_pred HHHHHhhCCCCCc--------------hhhHHHHHHHHH
Q psy9907 76 ARQLVTLNPDWDD--------------ETVYQESRRILG 100 (116)
Q Consensus 76 a~~L~~~~p~w~d--------------e~lfq~AR~iv~ 100 (116)
-..+..-+|.|+| |+|.++||+.|.
T Consensus 32 e~i~~Th~pTWdDcqqLL~~LfT~EEr~rI~~~Ark~v~ 70 (211)
T PF02093_consen 32 ESIFQTHQPTWDDCQQLLQTLFTTEERERILQEARKYVP 70 (211)
T ss_dssp HHHHHHT---HHHHHHHHHHHS-HHHHHHHHHHHHHT-B
T ss_pred HHHHHhcCCCHHHHHHHHHHHcCHHHHHHHHHHHHHHhc
Confidence 3455666889987 788999999773
No 11
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=34.11 E-value=79 Score=26.78 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHh------hCCCCCc------------------------hhhHHHHHHHHHHHH
Q psy9907 70 RQHNTLARQLVT------LNPDWDD------------------------ETVYQESRRILGAQM 103 (116)
Q Consensus 70 ReHN~ia~~L~~------~~p~w~d------------------------e~lfq~AR~iv~a~~ 103 (116)
|||=-+|++|+. .||-|+| .++++.+|+-+...-
T Consensus 196 rehv~w~re~a~gkf~~~fnppwgdink~gksgi~l~at~m~k~~eldg~~~~ed~k~~l~~l~ 259 (442)
T PF02477_consen 196 REHVDWGRELAAGKFQVVFNPPWGDINKAGKSGIPLAATGMAKLAELDGKKVLEDIKKTLLDLK 259 (442)
T ss_dssp --HHHHHHHHHHT--GGGGS-SSSSTT-BSSSSBHHHHHHHHHTTT----THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCeeEEEeCCCccccccccccCchHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 899888888876 5999976 567788877765543
No 12
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=32.42 E-value=42 Score=18.68 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=15.5
Q ss_pred HHHHHHHhhCCCCCchhhHHH
Q psy9907 74 TLARQLVTLNPDWDDETVYQE 94 (116)
Q Consensus 74 ~ia~~L~~~~p~w~de~lfq~ 94 (116)
-..+.|+...|+|+.+.|-..
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~ 23 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAV 23 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHH
Confidence 356789999999999877543
No 13
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=31.69 E-value=83 Score=22.20 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhCCCCCc-hhhHHHH
Q psy9907 61 LTSMHLLLARQHNTLARQLVTLNPDWDD-ETVYQES 95 (116)
Q Consensus 61 l~~~h~lf~ReHN~ia~~L~~~~p~w~d-e~lfq~A 95 (116)
..++..+|.+.+..+...+....+++.+ |+|.|++
T Consensus 9 ~~af~~l~~~~~~~l~~~~~~~~~~~~~AEDlvQe~ 44 (172)
T PRK09651 9 SLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDT 44 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHH
Confidence 3467777888888888887777776655 7777775
No 14
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=31.27 E-value=34 Score=22.72 Aligned_cols=32 Identities=16% Similarity=0.524 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHh
Q psy9907 73 NTLARQLVTLNPDWDDETVYQESRRILGAQMQHV 106 (116)
Q Consensus 73 N~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I 106 (116)
+.||.-+..+-.||.+. |-+|+--+-+.+++|
T Consensus 38 shiaKsMPpL~kHWN~~--~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 38 SHIAKSMPPLAKHWNGT--YPEAKEEIKELIEEI 69 (82)
T ss_pred HHHHHhCcHHHHhhccc--CchHHHHHHHHHHHH
Confidence 45666666666789887 888888888888777
No 15
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=29.14 E-value=21 Score=14.39 Aligned_cols=7 Identities=14% Similarity=-0.430 Sum_probs=5.2
Q ss_pred ccccccC
Q psy9907 109 LENYLCD 115 (116)
Q Consensus 109 ~e~lp~~ 115 (116)
+||||-.
T Consensus 2 ~eYLpP~ 8 (9)
T PF02757_consen 2 NEYLPPV 8 (9)
T ss_pred ccccCCC
Confidence 5899854
No 16
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=27.66 E-value=55 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=20.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHH
Q psy9907 83 NPDWDDETVYQESRRILGAQMQH 105 (116)
Q Consensus 83 ~p~w~de~lfq~AR~iv~a~~q~ 105 (116)
-|..+.++||+.|+.++...++.
T Consensus 7 vpg~sk~~ly~~~~~W~~~~~~~ 29 (91)
T PF14730_consen 7 VPGMSKDQLYDRAKKWLAKNFKS 29 (91)
T ss_pred cCCCCHHHHHHHHHHHHHHhccc
Confidence 47889999999999999888764
No 17
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=26.66 E-value=33 Score=28.28 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=32.3
Q ss_pred HhhhHHHHHHHHhhCCCCCc-----hhhHHHHHHHHHHHHHHhhhccccccC
Q psy9907 69 ARQHNTLARQLVTLNPDWDD-----ETVYQESRRILGAQMQHVTSLENYLCD 115 (116)
Q Consensus 69 ~ReHN~ia~~L~~~~p~w~d-----e~lfq~AR~iv~a~~q~I~~~e~lp~~ 115 (116)
+|||-.+-+.|.. -|.|+. =+.|..-=+-=.-.+||-.|.||+|.+
T Consensus 255 ~~~HSPiL~DIs~-Vk~WSKVn~GmIKMY~~EVL~K~PV~QHF~Fg~~~P~~ 305 (353)
T COG5057 255 FREHSPILYDISA-VKTWSKVNEGMIKMYDVEVLSKLPVVQHFIFGEFLPKD 305 (353)
T ss_pred ccccChhhhhhhc-cccHHHHHHHHHHHHHHHHhhccchhhhhhhcccccCC
Confidence 5999999998888 788863 233322211113458999999999986
No 18
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=26.63 E-value=1.2e+02 Score=24.84 Aligned_cols=41 Identities=15% Similarity=0.447 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCCCch-------hhHHHHHHHHHHHHHHhh---hcccccc
Q psy9907 74 TLARQLVTLNPDWDDE-------TVYQESRRILGAQMQHVT---SLENYLC 114 (116)
Q Consensus 74 ~ia~~L~~~~p~w~de-------~lfq~AR~iv~a~~q~I~---~~e~lp~ 114 (116)
-+...+...||.|+++ +-|.+|=.++..++..-+ ..-|+||
T Consensus 144 ~ls~~V~~~Np~w~~~~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpA 194 (318)
T PF03690_consen 144 SLSSRVSRLNPSWNEPDDDEDEDERFEKAMELAGEEFENRVKYYAKSWLPA 194 (318)
T ss_pred CHHHHHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3455777889999864 678888888888875432 3456665
No 19
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=25.11 E-value=1.2e+02 Score=24.87 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCCch--------hhHHHHHHHHHHHHHHhhhcccccc
Q psy9907 75 LARQLVTLNPDWDDE--------TVYQESRRILGAQMQHVTSLENYLC 114 (116)
Q Consensus 75 ia~~L~~~~p~w~de--------~lfq~AR~iv~a~~q~I~~~e~lp~ 114 (116)
+.+.+...||+|+|| +-+|.|++.+...+-.|+ -|+|+
T Consensus 145 l~~iv~~~np~~~~e~~~d~~F~~al~~a~~~l~~~~~~~~--~w~~a 190 (306)
T COG4286 145 LPDIVESFNPDWSDEDADDEGFLEALAFASDFLDNLFKTIV--SWLRA 190 (306)
T ss_pred hHHHHHhcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 778888899999862 235667788888887777 66664
No 20
>KOG0030|consensus
Probab=23.21 E-value=58 Score=24.05 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=25.4
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHH--HHHHhhhcccccc
Q psy9907 75 LARQLVTLNPDWDDETVYQESRRILGA--QMQHVTSLENYLC 114 (116)
Q Consensus 75 ia~~L~~~~p~w~de~lfq~AR~iv~a--~~q~I~~~e~lp~ 114 (116)
+++.|++.--.-++.++-+..++-..- .+|.|+|++|||.
T Consensus 33 ~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm 74 (152)
T KOG0030|consen 33 VGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPM 74 (152)
T ss_pred HHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHH
Confidence 345555543333577777766555544 4589999999984
No 21
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=23.05 E-value=2.1e+02 Score=19.98 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhh
Q psy9907 62 TSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107 (116)
Q Consensus 62 ~~~h~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~ 107 (116)
.-+|+| -|.|.+++. ...++-++++++..+|....--||.-+
T Consensus 37 ~RLHIL-KrF~~yL~~---~~~~~~~e~~~~~~yr~aL~~AY~dF~ 78 (113)
T PRK00810 37 ARLHIL-KRMGQYLAQ---EDFAGLPEAEARARCRAVLERAYADFV 78 (113)
T ss_pred hHHHHH-HHHHHHHHh---cccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 446644 688888873 225777899999999999888777543
No 22
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.65 E-value=1.8e+02 Score=23.33 Aligned_cols=67 Identities=15% Similarity=-0.025 Sum_probs=35.3
Q ss_pred ccceecCCccccccccccceeeecCCcccccchhHHHHHHHHHhhhHHHHHHHHhhCCCCCchhhHHH
Q psy9907 27 LLLARQHNTLHLSFFSVVFIRYKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQE 94 (116)
Q Consensus 27 g~l~~~~~g~~lp~~~~~~~~f~~Gd~R~ne~~~l~~~h~lf~ReHN~ia~~L~~~~p~w~de~lfq~ 94 (116)
++++.-+|....+......++.+.||.-+.-+|-...==|+=+.+=-.+++.|+.. |+.+|.+.-.+
T Consensus 112 ~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~-~dl~d~~~v~~ 178 (276)
T PF08491_consen 112 GRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI-PDLSDTKAVLE 178 (276)
T ss_pred CCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh-cCcccHHHHHH
Confidence 34444344332222233456888999976666544332233334444566666666 77777654333
No 23
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=22.55 E-value=2.2e+02 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=36.4
Q ss_pred HHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHhhhc
Q psy9907 66 LLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTSL 109 (116)
Q Consensus 66 ~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I~~~ 109 (116)
-+.-+.|..+.+.+...=-.|+++++=+--..++.-++|.|+++
T Consensus 305 ~~v~~~~~~i~~~V~~~l~~~~~~~l~~~i~~~v~~dL~~Irin 348 (367)
T PF04286_consen 305 RIVESNHIDIGEIVEEKLNSLDDEELEELIESKVGKDLQWIRIN 348 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhHhhhhh
Confidence 34445567788777777778999999999999999999999875
No 24
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.44 E-value=61 Score=18.98 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHH
Q psy9907 88 DETVYQESRRILG 100 (116)
Q Consensus 88 de~lfq~AR~iv~ 100 (116)
||+|+++|+++.+
T Consensus 8 Dd~Ll~eA~~l~g 20 (47)
T PF09957_consen 8 DDELLAEAMRLTG 20 (47)
T ss_pred CHHHHHHHHHHhC
Confidence 7899999998865
No 25
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=20.42 E-value=65 Score=19.45 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHhh
Q psy9907 70 RQHNTLARQLVTL 82 (116)
Q Consensus 70 ReHN~ia~~L~~~ 82 (116)
|+.|..|+.|++.
T Consensus 71 r~~N~~A~~LA~~ 83 (87)
T PF13456_consen 71 REQNKVADALAKF 83 (87)
T ss_dssp GGGSHHHHHHHHH
T ss_pred hHHhHHHHHHHHH
Confidence 8999999998863
No 26
>KOG1566|consensus
Probab=20.39 E-value=2.7e+02 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=35.9
Q ss_pred HHHHHhhhHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHh
Q psy9907 65 HLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHV 106 (116)
Q Consensus 65 h~lf~ReHN~ia~~L~~~~p~w~de~lfq~AR~iv~a~~q~I 106 (116)
-.+++|.+.++.+.++...|+-++++=|..-|.-++-+++..
T Consensus 295 ~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~~i~eI~~l 336 (342)
T KOG1566|consen 295 RDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAYLIKEIRQL 336 (342)
T ss_pred HHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhc
Confidence 456679999999999999999988888988888888887764
No 27
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=20.35 E-value=75 Score=18.49 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=12.7
Q ss_pred HHhhCCCCCchhhHHHH
Q psy9907 79 LVTLNPDWDDETVYQES 95 (116)
Q Consensus 79 L~~~~p~w~de~lfq~A 95 (116)
+....|+-+||.||+.|
T Consensus 29 ~~nvk~~Atdedl~~Va 45 (47)
T PF07872_consen 29 FSNVKPDATDEDLYDVA 45 (47)
T ss_pred hhhcCCCCCHHHHHHHh
Confidence 44556888889888876
Done!