RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9907
(116 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 111 bits (280), Expect = 1e-30
Identities = 33/57 (57%), Positives = 42/57 (73%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
GD R NE LTSMH L R+HN +A +L LNP WDDE ++QE+R+I+ AQMQH+T
Sbjct: 69 GDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARKIVIAQMQHIT 125
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 97.8 bits (244), Expect = 4e-25
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
GD+R NEN LT++H L R+HN +A +L LNP W DE ++QE+R I+ AQ Q +T
Sbjct: 206 GDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARLIVIAQYQKIT 262
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 93.1 bits (232), Expect = 1e-23
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
GD RANE LTSMH L R+HN +A +L+ LNP WD ET+Y E+R+I+GAQMQH+T
Sbjct: 111 GDHRANEQLGLTSMHTLWLREHNRIASELLELNPHWDGETIYHETRKIVGAQMQHIT 167
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 82.7 bits (205), Expect = 7e-20
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
GD RANEN LT++H L R+HN LA +L NP DE +YQ +R I+ A++Q +T
Sbjct: 116 GDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEIYQAARAIVIAEIQAIT 172
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 80.9 bits (200), Expect = 2e-19
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 48 YKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
+ GD R NEN L ++H L R+HN LA +L +P+WDDE +YQE+R I+ AQ Q +T
Sbjct: 68 FIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARLIVIAQYQLIT 127
Query: 108 SLENYL 113
YL
Sbjct: 128 -YNEYL 132
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 79.4 bits (196), Expect = 9e-19
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
GD R +EN L ++H LL R+HN LAR+L LNP WD ET+YQE+R+I+GA +Q +T
Sbjct: 87 GDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQEARKIVGAMVQIIT 143
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 78.2 bits (193), Expect = 4e-18
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTSLE 110
GD RA+E LT+ H L R+HN LAR L ++NP WD E +YQE+R+I+GA Q +T
Sbjct: 224 GDGRASEVLTLTASHTLWLREHNRLARALKSINPHWDGEQIYQEARKIVGALHQIIT-FR 282
Query: 111 NYL 113
+Y+
Sbjct: 283 DYI 285
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 70.0 bits (172), Expect = 2e-15
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 48 YKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHV 106
+K G+ R NEN L + +L R HN LA+++ +PDW DE ++QE+R+ + A Q++
Sbjct: 201 FKLGNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEARKWVIATYQNI 259
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 47.8 bits (114), Expect = 1e-07
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 27/100 (27%)
Query: 9 YISGDARANENTHLTSMHLLLARQHNTLHLSFFSVVFIRYKRGDARANENTHLTSMHLLL 68
+++GD R NEN LT++H + R+HN L
Sbjct: 178 FVAGDGRVNENIGLTAVHTVFHREHN-------------------------RLVDQIKDT 212
Query: 69 ARQHNTLARQLVTLNPD--WDDETVYQESRRILGAQMQHV 106
Q LA + WD E ++Q +R Q QH+
Sbjct: 213 LLQSADLAFANEAGGNNLAWDGERLFQAARFANEMQYQHL 252
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 45.3 bits (108), Expect = 1e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL 99
G R N L ++ + R+HN + L +PDWDDE ++Q +R IL
Sbjct: 202 GHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDERLFQTARNIL 250
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 38.0 bits (89), Expect = 4e-04
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 61 LTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQM 103
L+ +H L R+HN + L PDW DE ++ ++R + A M
Sbjct: 148 LSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKARLVNAALM 190
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 34.6 bits (80), Expect = 0.006
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL 99
GD R +EN + +HL R HN + L D+ +++E+RR++
Sbjct: 147 GDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEARRLV 193
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 27.0 bits (60), Expect = 2.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 51 GDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGA 101
GD R N ++ + L ++HN + L PD+DDE +Y+ +R + A
Sbjct: 257 GDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSA 306
>gnl|CDD|221461 pfam12204, DUF3598, Domain of unknown function (DUF3598). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 230 and
398 amino acids in length. These proteins are formed
entirely from B sheets which form a barrel structure
similar to those seen in the lipocalin superfamily.
Length = 250
Score = 26.6 bits (59), Expect = 3.6
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 42 SVVFIRYKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESR 96
+ IR R A E LT LL T + T+ PD S
Sbjct: 125 RITLIREHRAGTDAAERPPLTVEQLL-----GTWRGEAQTIYPDLRSPDTTTTST 174
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 26.4 bits (58), Expect = 3.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 45 FIRYKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL 99
++ RG R E LAR+H LA + P+ DDE V SRR L
Sbjct: 367 YLGKSRGIQRTRE----------LAREHANLAAAAIESLPETDDEDV-LTSRRAL 410
>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding
peptidoglycan. LysM, a small globular domain with
approximately 40 amino acids, is a widespread protein
module involved in binding peptidoglycan in bacteria
and chitin in eukaryotes. The domain was originally
identified in enzymes that degrade bacterial cell
walls, but proteins involved in many other biological
functions also contain this domain. It has been
reported that the LysM domain functions as a signal for
specific plant-bacteria recognition in bacterial
pathogenesis. Many of these enzymes are modular and are
composed of catalytic units linked to one or several
repeats of LysM domains. LysM domains are found in
bacteria and eukaryotes.
Length = 45
Score = 24.4 bits (54), Expect = 4.6
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 68 LARQHNTLARQLVTLNPDWDDETVY 92
+A+++ +L NP + + +Y
Sbjct: 14 IAKKYGVTVEELAAANPLINPDCIY 38
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 26.3 bits (58), Expect = 4.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 53 ARANENTH--LTSMHLLLARQHNTLARQ 78
ARA E+ H +T HLLLA N AR+
Sbjct: 15 ARAREHRHEFMTVEHLLLALLSNPSARE 42
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 26.0 bits (57), Expect = 5.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 58 NTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHV 106
S+ L+LA +TL +Q ++ P D E V+ + G+ HV
Sbjct: 410 APKFKSLDLVLAVSKDTLEQQCIS-TPFSDLEDVFPVPSKYTGSNAAHV 457
>gnl|CDD|216704 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosyltransferase.
This is a family of alpha-1,2 mannosyl-transferases
involved in N-linked and O-linked glycosylation of
proteins. Some of the enzymes in this family have been
shown to be involved in O- and N-linked glycan
modifications in the Golgi.
Length = 273
Score = 25.9 bits (58), Expect = 5.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 84 PDWDDETVYQESRRILGAQ 102
P+W D+ ESR +G +
Sbjct: 73 PEWIDQDKAAESREKMGEK 91
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain. This short domain
is found in one or two copies at the amino terminus of
ClpA and ClpB proteins from bacteria and eukaryotes.
The function of these domains is uncertain but they may
form a protein binding site.
Length = 53
Score = 24.0 bits (53), Expect = 8.4
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 53 ARANENTHLTSMHLLLA--RQHNTLARQL 79
A+ + ++ + HLLLA + + +A +L
Sbjct: 5 AKELGHQYIGTEHLLLALLEEDDGIAARL 33
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.388
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,752,561
Number of extensions: 482534
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 40
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.3 bits)