RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9907
(116 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 83.6 bits (206), Expect = 2e-20
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 47 RYKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHV 106
++ G L + R+HN + L +P+W DE ++Q SR IL + +
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 107 TSLE 110
+
Sbjct: 313 VIED 316
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 77.9 bits (191), Expect = 2e-18
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 48 YKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
+ GD R++E LTSMH LL R+HN LA +L +LNP WD E +YQE+R+I+GA +Q +T
Sbjct: 121 FLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIIT 180
Query: 108 SLE 110
+
Sbjct: 181 YRD 183
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 77.8 bits (191), Expect = 3e-18
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 48 YKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
G L + R+HN + L +P W DE ++Q +R IL + +
Sbjct: 254 MAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIV 313
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 77.7 bits (190), Expect = 3e-18
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 48 YKRGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT 107
+ GD RA+E L + H LL R+HN LAR+L LNP W+ E +YQE+R+ILGA +Q +T
Sbjct: 249 FLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIIT 308
Query: 108 SLE 110
+
Sbjct: 309 FRD 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.5
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 38 LSFFSVVFIRYKRGDARAN---ENTHLTSMHLLLARQHNTLARQLVTLNPD-----WDDE 89
+S S+V + + RG + S + ++A +NP + E
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA------------INPGRVAASFSQE 1824
Query: 90 TVYQESRRILGAQMQHVTSLENY 112
+ R+ G + + + NY
Sbjct: 1825 ALQYVVERV-GKRTGWLVEIVNY 1846
Score = 25.4 bits (55), Expect = 5.9
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 75 LARQLVTLNPDWDDETVYQESRRIL 99
+ ++ L W+ T ++ + IL
Sbjct: 479 IVDCIIRLPVKWETTTQFKAT-HIL 502
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 25.2 bits (56), Expect = 6.7
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 94 ESRRILGAQM 103
+RR+LG Q
Sbjct: 395 PTRRVLGIQG 404
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 25.2 bits (56), Expect = 7.0
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 94 ESRRILGAQM 103
++R ILG +
Sbjct: 383 KTRVILGGAL 392
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 25.1 bits (56), Expect = 7.2
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 94 ESRRILGAQM 103
++R+LGAQ+
Sbjct: 378 VTQRVLGAQL 387
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 24.8 bits (55), Expect = 7.3
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 94 ESRRILGAQM 103
+SRRILGAQM
Sbjct: 428 DSRRILGAQM 437
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 24.7 bits (55), Expect = 7.7
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 94 ESRRILGAQM 103
E+ +ILGAQ+
Sbjct: 382 ETTQILGAQL 391
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 24.8 bits (55), Expect = 7.7
Identities = 3/10 (30%), Positives = 9/10 (90%)
Query: 94 ESRRILGAQM 103
+++++LG Q+
Sbjct: 419 DTKQLLGGQV 428
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 24.8 bits (55), Expect = 7.7
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 94 ESRRILGAQM 103
+R+IL A
Sbjct: 377 SNRQILRAAA 386
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 24.8 bits (55), Expect = 7.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 94 ESRRILGAQM 103
E+ R+LG Q+
Sbjct: 381 ETNRLLGVQV 390
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 24.9 bits (55), Expect = 9.0
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 94 ESRRILGAQM 103
I GAQ
Sbjct: 404 VKGTIFGAQA 413
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.388
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,670,230
Number of extensions: 82462
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 29
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)