Query psy9912
Match_columns 366
No_of_seqs 308 out of 2164
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:50:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234|consensus 100.0 8.5E-79 1.9E-83 581.0 30.4 345 1-348 89-437 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 6.9E-65 1.5E-69 528.5 33.7 331 3-339 274-637 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 1.7E-46 3.7E-51 337.8 13.6 148 2-150 74-222 (222)
4 PRK07238 bifunctional RNase H/ 100.0 4.4E-44 9.4E-49 350.1 21.6 297 27-330 40-358 (372)
5 PRK14116 gpmA phosphoglyceromu 100.0 6.3E-39 1.4E-43 293.1 17.4 183 151-333 2-223 (228)
6 PRK13463 phosphatase PhoE; Pro 100.0 1.9E-38 4.1E-43 285.2 19.0 184 150-335 2-195 (203)
7 PRK14119 gpmA phosphoglyceromu 100.0 2.3E-38 5E-43 289.6 18.2 182 150-331 1-221 (228)
8 PRK15004 alpha-ribazole phosph 100.0 3.7E-38 8E-43 282.5 18.9 183 151-335 1-192 (199)
9 PRK14117 gpmA phosphoglyceromu 100.0 3.6E-38 7.7E-43 288.4 19.1 187 150-336 1-226 (230)
10 PRK01112 phosphoglyceromutase; 100.0 3.4E-38 7.3E-43 287.9 18.7 183 150-334 1-223 (228)
11 PRK14118 gpmA phosphoglyceromu 100.0 1E-37 2.2E-42 285.0 18.3 179 151-329 1-218 (227)
12 PRK13462 acid phosphatase; Pro 100.0 2.6E-37 5.6E-42 277.5 20.1 184 148-337 3-192 (203)
13 PRK01295 phosphoglyceromutase; 100.0 1.7E-37 3.7E-42 279.4 18.7 180 149-328 1-194 (206)
14 PRK14120 gpmA phosphoglyceromu 100.0 7.4E-37 1.6E-41 282.1 19.9 182 148-329 2-220 (249)
15 COG0406 phoE Broad specificity 100.0 1.4E-36 3E-41 274.0 19.4 183 149-331 1-192 (208)
16 TIGR01258 pgm_1 phosphoglycera 100.0 1.4E-36 3E-41 280.0 19.3 189 151-339 1-228 (245)
17 PRK14115 gpmA phosphoglyceromu 100.0 1.4E-36 3.1E-41 280.2 19.3 188 151-338 1-227 (247)
18 TIGR03848 MSMEG_4193 probable 100.0 4.4E-36 9.6E-41 270.1 19.6 181 152-336 1-196 (204)
19 PRK03482 phosphoglycerate muta 100.0 5.2E-36 1.1E-40 271.8 19.8 178 150-329 1-187 (215)
20 TIGR03162 ribazole_cobC alpha- 100.0 4E-36 8.8E-41 264.1 16.1 168 153-324 1-177 (177)
21 PF00300 His_Phos_1: Histidine 100.0 2.8E-31 6.1E-36 227.7 11.7 148 152-299 1-158 (158)
22 KOG0235|consensus 100.0 1.1E-30 2.4E-35 231.6 15.4 181 148-328 3-200 (214)
23 PTZ00123 phosphoglycerate muta 100.0 2E-30 4.3E-35 238.2 17.3 173 163-335 1-212 (236)
24 smart00855 PGAM Phosphoglycera 100.0 2E-30 4.3E-35 223.1 13.1 144 152-299 1-155 (155)
25 COG0588 GpmA Phosphoglycerate 100.0 3.4E-30 7.3E-35 224.1 13.1 181 150-330 1-220 (230)
26 PTZ00122 phosphoglycerate muta 99.9 3.2E-24 6.9E-29 202.8 15.5 155 151-329 103-277 (299)
27 cd07067 HP_PGM_like Histidine 99.9 2.8E-24 6E-29 184.1 13.6 134 152-329 1-144 (153)
28 cd07040 HP Histidine phosphata 99.9 6.6E-21 1.4E-25 162.4 13.3 136 152-328 1-143 (153)
29 TIGR00249 sixA phosphohistidin 99.8 9.1E-20 2E-24 156.3 16.1 140 151-330 1-142 (152)
30 PRK06193 hypothetical protein; 99.8 2.6E-19 5.7E-24 159.6 14.0 142 149-330 41-190 (206)
31 PRK10848 phosphohistidine phos 99.8 2.4E-18 5.2E-23 148.6 15.6 138 151-328 1-140 (159)
32 COG2062 SixA Phosphohistidine 99.8 2.1E-18 4.6E-23 147.4 13.4 142 150-329 1-143 (163)
33 KOG4754|consensus 99.7 4.3E-17 9.4E-22 141.8 13.1 157 148-305 12-201 (248)
34 PRK15416 lipopolysaccharide co 99.7 1.8E-16 3.8E-21 140.3 14.9 135 150-332 54-191 (201)
35 KOG4609|consensus 99.7 1.6E-16 3.4E-21 138.2 11.3 160 149-333 93-266 (284)
36 KOG3734|consensus 99.7 2.7E-16 5.8E-21 143.9 13.2 175 147-326 9-232 (272)
37 PRK07708 hypothetical protein; 98.4 8.7E-08 1.9E-12 86.7 2.6 91 29-121 115-207 (219)
38 COG0328 RnhA Ribonuclease HI [ 98.1 9.9E-06 2.1E-10 68.8 6.5 96 25-123 36-146 (154)
39 PRK13907 rnhA ribonuclease H; 97.9 1E-05 2.2E-10 67.1 4.0 89 28-121 37-126 (128)
40 cd07061 HP_HAP_like Histidine 97.6 8.3E-05 1.8E-09 68.3 5.3 56 151-215 4-69 (242)
41 PF00328 His_Phos_2: Histidine 96.6 0.0038 8.3E-08 59.7 6.2 44 172-215 60-112 (347)
42 PF13671 AAA_33: AAA domain; P 96.6 0.024 5.3E-07 47.1 10.0 84 9-96 56-140 (143)
43 PF13456 RVT_3: Reverse transc 96.5 0.00045 9.7E-09 52.4 -0.8 84 32-120 1-85 (87)
44 COG4639 Predicted kinase [Gene 96.5 0.0078 1.7E-07 51.2 6.4 59 11-70 54-115 (168)
45 TIGR01663 PNK-3'Pase polynucle 95.4 0.083 1.8E-06 54.1 9.6 83 10-96 408-490 (526)
46 PHA02530 pseT polynucleotide k 95.0 0.32 6.9E-06 46.0 11.8 87 11-106 63-150 (300)
47 cd06222 RnaseH RNase H (RNase 94.9 0.014 3.1E-07 46.4 1.7 86 29-118 38-128 (130)
48 PRK10173 glucose-1-phosphatase 94.3 0.11 2.3E-06 51.8 6.6 65 151-215 33-124 (413)
49 KOG3720|consensus 93.6 0.12 2.6E-06 51.4 5.6 64 152-215 37-123 (411)
50 PRK06548 ribonuclease H; Provi 92.5 0.24 5.2E-06 42.7 5.1 101 28-136 38-151 (161)
51 PRK10172 phosphoanhydride phos 92.3 0.37 8.1E-06 48.1 6.9 65 151-215 36-126 (436)
52 PRK00203 rnhA ribonuclease H; 90.2 0.74 1.6E-05 39.0 5.8 91 28-122 39-142 (150)
53 cd02027 APSK Adenosine 5'-phos 89.4 1.8 3.9E-05 36.5 7.5 54 14-70 62-115 (149)
54 TIGR03574 selen_PSTK L-seryl-t 88.7 3.5 7.6E-05 37.9 9.6 54 16-71 62-115 (249)
55 PRK08719 ribonuclease H; Revie 87.2 0.66 1.4E-05 39.3 3.4 42 29-75 47-91 (147)
56 cd02021 GntK Gluconate kinase 86.6 3.4 7.4E-05 34.4 7.6 56 14-72 63-118 (150)
57 PRK06762 hypothetical protein; 82.1 4.6 0.0001 34.3 6.5 62 10-72 55-116 (166)
58 PF08433 KTI12: Chromatin asso 82.0 14 0.0003 34.6 10.1 76 14-97 63-138 (270)
59 KOG1057|consensus 80.4 1.9 4E-05 45.5 3.9 44 172-215 509-567 (1018)
60 cd00227 CPT Chloramphenicol (C 79.4 8.5 0.00018 33.2 7.3 56 12-71 74-130 (175)
61 TIGR00455 apsK adenylylsulfate 78.9 10 0.00022 32.9 7.7 54 13-69 80-133 (184)
62 TIGR01313 therm_gnt_kin carboh 74.0 18 0.00038 30.6 7.7 59 7-71 55-113 (163)
63 TIGR03575 selen_PSTK_euk L-ser 71.9 11 0.00024 36.6 6.5 49 23-72 127-175 (340)
64 KOG1382|consensus 68.8 6.6 0.00014 39.2 4.2 44 172-215 130-178 (467)
65 PRK14531 adenylate kinase; Pro 58.3 45 0.00097 28.9 7.3 73 24-107 80-153 (183)
66 PF00075 RNase_H: RNase H; In 57.8 9.2 0.0002 30.9 2.6 84 29-118 37-129 (132)
67 PF01424 R3H: R3H domain; Int 54.1 59 0.0013 22.7 6.1 46 4-52 1-46 (63)
68 PRK14532 adenylate kinase; Pro 49.9 1.3E+02 0.0028 25.8 8.9 76 23-106 78-155 (188)
69 KOG3062|consensus 49.0 53 0.0011 30.1 6.1 70 23-97 74-143 (281)
70 PRK14527 adenylate kinase; Pro 45.7 96 0.0021 26.9 7.4 77 23-107 83-161 (191)
71 PRK03846 adenylylsulfate kinas 44.4 71 0.0015 28.0 6.3 54 12-68 85-138 (198)
72 PRK04266 fibrillarin; Provisio 44.3 76 0.0017 28.8 6.6 45 9-54 156-206 (226)
73 PF01583 APS_kinase: Adenylyls 40.6 1.4E+02 0.0031 25.5 7.3 54 4-63 56-109 (156)
74 PF12048 DUF3530: Protein of u 39.7 71 0.0015 30.5 5.9 42 268-309 174-217 (310)
75 PF06414 Zeta_toxin: Zeta toxi 35.0 2.1E+02 0.0045 25.0 7.9 63 10-73 80-142 (199)
76 PRK05506 bifunctional sulfate 34.6 1.3E+02 0.0029 31.7 7.5 61 4-68 514-574 (632)
77 PRK13785 adenylosuccinate synt 33.8 1.8E+02 0.0039 29.4 7.8 30 266-295 412-443 (454)
78 PRK09191 two-component respons 33.5 1.4E+02 0.0031 26.8 6.8 56 232-305 101-158 (261)
79 PF08303 tRNA_lig_kinase: tRNA 33.1 3.3E+02 0.0071 23.7 8.3 105 12-121 43-164 (168)
80 COG4088 Predicted nucleotide k 32.2 4E+02 0.0086 24.4 9.8 83 4-97 57-139 (261)
81 TIGR00824 EIIA-man PTS system, 29.1 87 0.0019 25.1 4.0 46 260-305 34-82 (116)
82 KOG3672|consensus 28.8 59 0.0013 32.0 3.3 42 174-215 168-222 (487)
83 PF02571 CbiJ: Precorrin-6x re 27.1 1.7E+02 0.0036 27.0 6.0 46 11-57 54-100 (249)
84 cd07397 MPP_DevT Myxococcus xa 26.9 1.2E+02 0.0026 27.8 4.9 35 264-298 126-160 (238)
85 PRK11545 gntK gluconate kinase 26.8 3.4E+02 0.0075 22.8 7.6 39 28-71 72-110 (163)
86 PRK00279 adk adenylate kinase; 25.1 3.8E+02 0.0083 23.6 7.9 80 25-107 80-183 (215)
87 PRK08057 cobalt-precorrin-6x r 24.4 1.8E+02 0.004 26.8 5.7 45 12-57 54-99 (248)
88 PRK00889 adenylylsulfate kinas 22.8 3.9E+02 0.0085 22.5 7.3 46 19-69 72-117 (175)
89 COG2454 Uncharacterized conser 22.2 4.2E+02 0.0092 23.7 7.1 59 7-66 111-173 (211)
90 TIGR01552 phd_fam prevent-host 21.9 1.9E+02 0.0041 19.1 4.1 30 266-295 3-32 (52)
91 PF08602 Mgr1: Mgr1-like, i-AA 21.1 3.9E+02 0.0084 26.1 7.2 68 10-100 161-239 (363)
92 COG1117 PstB ABC-type phosphat 21.0 1.1E+02 0.0023 28.1 3.3 27 271-297 185-211 (253)
93 COG1058 CinA Predicted nucleot 20.5 2E+02 0.0042 26.8 5.0 40 39-80 24-63 (255)
94 cd02325 R3H R3H domain. The na 20.1 2.5E+02 0.0055 18.4 4.5 38 12-52 5-43 (59)
No 1
>KOG0234|consensus
Probab=100.00 E-value=8.5e-79 Score=581.00 Aligned_cols=345 Identities=58% Similarity=0.964 Sum_probs=331.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCchHHHHHHHHHHHHh-hcCCeEEEEEEEeCCHHHHHHhHHHHhcCCC
Q psy9912 1 MRIRTQCAIDALTDVIAWLETG-GEVAVFDATNSTIDRRKMIHEMVVD-KMGYKLFFVESVCDDPSIIEQNIMEVKVNSP 78 (366)
Q Consensus 1 ~~~r~~~~~~~~~d~~~~l~~~-g~vai~daTN~t~e~r~~i~~~~~~-~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~p 78 (366)
.++|+++|+.|++|+..||..+ |+||||||||+|++||++|..+ ++ +.+++++|||++|+|+.+|..||++.|..+|
T Consensus 89 ~~lr~~~a~~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~-~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~sp 167 (438)
T KOG0234|consen 89 SKLRKQLALLALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDF-AEREAGFKVFFIESVCNDPNLINNNIREVKHVSP 167 (438)
T ss_pred hhhhHHHHHHHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHH-HhhcCCceEEEEEeecCCchhHHhhhhhhhhcCC
Confidence 3689999999999999999977 9999999999999999999999 85 7899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhHHhhceeCchhhHHhhhhHhhhccCCceEeccccchhhhhHHHHhhcCCCCCeeEEEeec
Q psy9912 79 DYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQARIVYYLMNIHIVPRTIYLTRH 158 (366)
Q Consensus 79 dy~~~~~e~a~~~~~~r~~~~~~~y~p~~~~~~~~~~~ik~id~g~~~~~~~~~g~l~~~i~~~l~n~~~~~~~I~LvRH 158 (366)
||++++.+.|+++|++|+..|+..|+|++++.+.+++|+|+||+|+++++++++||++|++||||||.|..+++|||.||
T Consensus 168 dy~~~~~e~a~~dfl~ri~~ye~~YePld~~~d~~lsyik~in~g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~ 247 (438)
T KOG0234|consen 168 DYKGKDQEEALKDFLKRIRNYEKYYEPLDRARDKDLSYIKIINVGEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRH 247 (438)
T ss_pred CcCCCCHHHHHHHHHHHHHhhhhccCcCChhhccccceEEEecccceEEEecccceehhhhhhhhhccccCCceEEEEec
Confidence 99999999999999999999999999999777789999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccCCCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCc--eeeccccccccCccCCC
Q psy9912 159 GESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQ--ERWKALNEIDAGICEEM 236 (366)
Q Consensus 159 Ges~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~--~~~~~L~E~~~G~~eg~ 236 (366)
||+++|+.|+.+||.+||++|.++|+.+++++.........||||++.||+|||+.++.+. .+|..|+|++.|.|+|+
T Consensus 248 geS~~n~~griggds~ls~~g~~ya~~l~~f~~~~~~~dl~vwts~~~rti~ta~~l~~~~~~~~~~~Ldei~ag~~~g~ 327 (438)
T KOG0234|consen 248 GESEFNVEGRIGGDSPLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRTIQTAEGLKLDYSVEQWKALDEIDAGVCEGL 327 (438)
T ss_pred CCCccccccccCCcccccHHHHHHHHHHHHHHhhhcccCceeccchHHHHhhhHhhcCcchhhhhHhhcCcccccccccc
Confidence 9999999999999999999999999999999988877666999999999999999887666 79999999999999999
Q ss_pred CHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEechHHHHHHHHHHhcCCCCCCCCccc
Q psy9912 237 TYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQV 316 (366)
Q Consensus 237 ~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~ 316 (366)
|++|+...||+++..+..|++.|+||+||||.|+..|++|+|.+++++.+|+||||..+||||++||++.++.+.|.+.+
T Consensus 328 t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~Vlvi~Hqavircll~Yf~~~~~~e~p~l~~ 407 (438)
T KOG0234|consen 328 TYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQENVLVITHQAVIRCLLAYFLNCSPVELPYLTV 407 (438)
T ss_pred cHHHHHHhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhcccEEEEecHHHHHHHHHHHhcCCHhhcccccc
Confidence 99999999999999999999999999999999999999999999999977999999999999999999999999999999
Q ss_pred CCceEEEEEEecCccEEEEEeeCCCCCCCCCC
Q psy9912 317 PLHTIIKLTPVAYGCKMEMIKLPIDAVDTHRP 348 (366)
Q Consensus 317 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~r~ 348 (366)
|.++|++|++.++++.++.+.+++.+ ++ |.
T Consensus 408 plhtv~~l~~~~y~~~~e~~~~~~~a-~t-r~ 437 (438)
T KOG0234|consen 408 PLHTVIKLTPDAYGTTVESIRLNDTA-NT-RL 437 (438)
T ss_pred cceeEEEEeeccccceeEEeeccccc-cc-cC
Confidence 99999999999999999999999888 55 43
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=6.9e-65 Score=528.49 Aligned_cols=331 Identities=28% Similarity=0.491 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCC----eEEEEEEEeCCHHHHHHhHHHHhcCCC
Q psy9912 3 IRTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGY----KLFFVESVCDDPSIIEQNIMEVKVNSP 78 (366)
Q Consensus 3 ~r~~~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~----~~~~iE~~~d~~~vi~~ni~~~k~~~p 78 (366)
.+.+++..+++||.+|+.++|.||||||||.|++||..+++. +++.+. +++||||+|+++..++.|+.+.+..+|
T Consensus 274 ~e~~~~~~~~~d~~~~v~~~GgvaI~DatN~t~~rR~~~~~~-~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~ 352 (664)
T PTZ00322 274 VEFRIAKAIAHDMTTFICKTDGVAVLDGTNTTHARRMALLRA-IRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFP 352 (664)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHH-HHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCC
Confidence 456789999999999999887899999999999999999998 777664 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhHHhhceeCchhhHHhhhhHhhhccCCceEeccccchhhhhHHHHhhcCCCCCeeEEEeec
Q psy9912 79 DYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQARIVYYLMNIHIVPRTIYLTRH 158 (366)
Q Consensus 79 dy~~~~~e~a~~~~~~r~~~~~~~y~p~~~~~~~~~~~ik~id~g~~~~~~~~~g~l~~~i~~~l~n~~~~~~~I~LvRH 158 (366)
+ +.+++.++|.+|++.|+..|+|.+...+.+++|||++| |+++.+|+++|||+++|+|||||+|..+++|||+||
T Consensus 353 ~----~~e~~~~~~~~~~~~~~~~Ye~~~~~~d~~~~~ik~~~-g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRH 427 (664)
T PTZ00322 353 G----APEDFVDRYYEVIEQLEAVYKSLNPVTDCDLTYIRIED-TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRA 427 (664)
T ss_pred C----CHHHHHHHHHHHHHHHHhhcccCCccccCCCceEEEec-CcEEEEeccccccchhhheeeeeeccCCceEEEEec
Confidence 8 57888899999999999999998765566899999755 999999999999999999999999999999999999
Q ss_pred cccccccCCcccCCCCCCHhhHHHHHHHHHHHhcC-CCCCcEEEecchHHHHHHHHhcC---------------------
Q psy9912 159 GESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQ-DIPGLRIWTSWLKRTIQTVATCP--------------------- 216 (366)
Q Consensus 159 Ges~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~-~~~~~~i~tSpl~Ra~qTA~~i~--------------------- 216 (366)
|||.+|..++++||+|||+.|++||++++++|+.. ...++.|||||++||+|||+++.
T Consensus 428 GeT~~n~~~r~~Gd~pLt~~G~~qA~~l~~~l~~~~~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~ 507 (664)
T PTZ00322 428 GEYVDLLSGRIGGNSRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLN 507 (664)
T ss_pred ccchhhhcCccCCCCccCHHHHHHHHHHHHHHHhccCCCCcEEEcCCcHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99999999999999999999999999999999875 34466999999999999998773
Q ss_pred CCceeeccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHH-HHHHHHHHHHHcC-CeEEEEechH
Q psy9912 217 APQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLV-ARLEPVIMELERQ-GNVLVVSHQA 294 (366)
Q Consensus 217 ~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~-~R~~~~i~~l~~~-~~vlIVsH~~ 294 (366)
.++..++.|+|+++|.|||++++|+.+.+|+.+..|..+++.+++|+|||+.|+. .|+.+++.++.+. ++|||||||+
T Consensus 508 ~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~ 587 (664)
T PTZ00322 508 CRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLH 587 (664)
T ss_pred ccccchhhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcH
Confidence 2456789999999999999999999999999999999999999999999999976 7999999999766 8899999999
Q ss_pred HHHHHHHHHhcC-----CCCCCCCcccCCceEEEEEEecCccEEEEEeeC
Q psy9912 295 VLRCLLAYFLDK-----SADELPYLQVPLHTIIKLTPVAYGCKMEMIKLP 339 (366)
Q Consensus 295 ~ir~l~~~~~~~-----~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~~~~ 339 (366)
+||++++|+++. ++...+.+.+|++++++|++.+++...+.+.+.
T Consensus 588 vir~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~l~ 637 (664)
T PTZ00322 588 LLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIKIRMVGFNRVAELIDLS 637 (664)
T ss_pred HHHHHHHHHhcCCccccCcccCceeeccCCcEEEEEEeccCceEEEEech
Confidence 999999999995 678889999999999999999988888888775
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=1.7e-46 Score=337.84 Aligned_cols=148 Identities=55% Similarity=0.936 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCC
Q psy9912 2 RIRTQCAIDALTDVIAWLETG-GEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDY 80 (366)
Q Consensus 2 ~~r~~~~~~~~~d~~~~l~~~-g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy 80 (366)
++|+++|+.||+||++||+++ |+||||||||+|++||++|.+. +++.+++++||||+|||+.+|++||.+.+.+||||
T Consensus 74 ~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~-~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY 152 (222)
T PF01591_consen 74 KLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVER-FKEHGIKVLFIESICDDPEIIERNIREKKQNSPDY 152 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHH-HHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCccc
Confidence 689999999999999999955 9999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHHhhceeCchhhHHhhhhHhhhccCCceEeccccchhhhhHHHHhhcCCCCC
Q psy9912 81 QDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQARIVYYLMNIHIVP 150 (366)
Q Consensus 81 ~~~~~e~a~~~~~~r~~~~~~~y~p~~~~~~~~~~~ik~id~g~~~~~~~~~g~l~~~i~~~l~n~~~~~ 150 (366)
+++++++|++||++|+++|++.|||++++++.+++|||+||+|+++++|+++|||+|+|+|||||+|..|
T Consensus 153 ~~~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 153 KGMDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred ccCCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999997677899999999999999999999999999999999999865
No 4
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=100.00 E-value=4.4e-44 Score=350.15 Aligned_cols=297 Identities=22% Similarity=0.229 Sum_probs=247.3
Q ss_pred EEeCCCchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHhHHhhcee
Q psy9912 27 VFDATNSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEA 105 (366)
Q Consensus 27 i~daTN~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~~~~~y~p 105 (366)
+..+|||++|+.++|..+ .+.+.+++ .|++.+||+.|+++..++|+++++++..+-.+ +..+.+++..++..|+|
T Consensus 40 ~~~~tnn~AE~~All~gL~~a~~~g~~--~v~i~~DS~lvi~~i~~~~~~~~~~l~~~~~~--i~~l~~~f~~~~i~~v~ 115 (372)
T PRK07238 40 IGRATNNVAEYRGLIAGLEAAAELGAT--EVEVRMDSKLVVEQMSGRWKVKHPDMKPLAAQ--ARELASQFGRVTYTWIP 115 (372)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhCCCC--eEEEEeCcHHHHHHhCCCCccCChHHHHHHHH--HHHHHhcCCceEEEECC
Confidence 357899999999999976 46666664 58999999999999999999999988776544 24778888899999999
Q ss_pred CchhhHHhhhhHhhhccCCceEeccccc----hhh--------hhHHHHhhcCCCCCeeEEEeeccccccccCCcccC--
Q psy9912 106 LNEESEAALSFMRIYNTGEKVLVHKHEG----HIQ--------ARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGG-- 171 (366)
Q Consensus 106 ~~~~~~~~~~~ik~id~g~~~~~~~~~g----~l~--------~~i~~~l~n~~~~~~~I~LvRHGes~~n~~~~~~g-- 171 (366)
++.|..+|.+..++++.......-..+. --| .....|- ..+.++++||||||||+.+|..++++|
T Consensus 116 r~~N~~AD~LA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~LvRHGet~~n~~~~~~g~~ 194 (372)
T PRK07238 116 RARNAHADRLANEAMDAAAGGEPWGPSAAAADADPAKSAAPPAPTAPGWT-GARGTPTRLLLLRHGQTELSVQRRYSGRG 194 (372)
T ss_pred chhhhHHHHHHHHHHHhhccCCCccccccccCCCCccccCCCCCCCCCCC-CCCCCceEEEEEeCCCCCcccCCeeeCCC
Confidence 9999999999999987654332211110 001 1111221 123466899999999999999999887
Q ss_pred CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeeccccccccCccCCCCHHHHHhhCch
Q psy9912 172 DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWKALNEIDAGICEEMTYEQIAEKYPD 247 (366)
Q Consensus 172 D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~ 247 (366)
|.|||+.|++||+.+++.|+... +++.|||||+.||+|||+.+ +.++...+.|+|+++|.|+|++++++.+.+|+
T Consensus 195 D~~Lt~~G~~QA~~l~~~l~~~~-~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~ 273 (372)
T PRK07238 195 NPELTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRARDTAAAAAKALGLDVTVDDDLIETDFGAWEGLTFAEAAERDPE 273 (372)
T ss_pred CCCcCHHHHHHHHHHHHHHhccC-CCCEEEECChHHHHHHHHHHHHhcCCCcEECccceeCCCCccCCCCHHHHHHHCHH
Confidence 99999999999999999998762 45699999999999999987 45788999999999999999999999999999
Q ss_pred HHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEE
Q psy9912 248 DFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKL 324 (366)
Q Consensus 248 ~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l 324 (366)
.+..|..++ .+.+|+|||+.++..|+..++.++... ++|||||||++|++++++++|.+.+....+.+++++++.+
T Consensus 274 ~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~ir~ll~~~l~~~~~~~~~~~~~~~~~s~l 352 (372)
T PRK07238 274 LHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPIKTLLRLALDAGPGVLYRLHLDLASLSIA 352 (372)
T ss_pred HHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHHHHHHHHHhCCCHHHhhhcccCCceEEEE
Confidence 888777665 577899999999999999999998653 6899999999999999999999998888889999999999
Q ss_pred EEecCc
Q psy9912 325 TPVAYG 330 (366)
Q Consensus 325 ~~~~~~ 330 (366)
.+...+
T Consensus 353 ~~~~~~ 358 (372)
T PRK07238 353 EFYPDG 358 (372)
T ss_pred EEECCC
Confidence 986554
No 5
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=6.3e-39 Score=293.13 Aligned_cols=183 Identities=25% Similarity=0.306 Sum_probs=160.4
Q ss_pred eeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCcee
Q psy9912 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQER 221 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~~ 221 (366)
++|||||||||.+|..++++| |.|||+.|++||+.+++.|+..+.+++.|||||+.||+|||++|. .++..
T Consensus 2 ~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~~~~ 81 (228)
T PRK14116 2 AKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESDQLWIPETK 81 (228)
T ss_pred CEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCcCCCCccc
Confidence 689999999999999999999 999999999999999999987656678999999999999999872 36778
Q ss_pred eccccccccCccCCCCHHHHHhhCchH-HHhhhhC------------------------CCccCCCCCCCHHHHHHHHHH
Q psy9912 222 WKALNEIDAGICEEMTYEQIAEKYPDD-FSARDCA------------------------KFTYRYPRGESYEDLVARLEP 276 (366)
Q Consensus 222 ~~~L~E~~~G~~eg~~~~ei~~~~p~~-~~~~~~~------------------------~~~~~~p~gES~~d~~~R~~~ 276 (366)
++.|+|+++|.|||++++++.+.+|+. +..|..+ ...+.+|+|||+.++.+|+.+
T Consensus 82 ~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv~~ 161 (228)
T PRK14116 82 TWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIP 161 (228)
T ss_pred CcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999986 3333322 113467999999999999999
Q ss_pred HHHHHHc-----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEE
Q psy9912 277 VIMELER-----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKM 333 (366)
Q Consensus 277 ~i~~l~~-----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~ 333 (366)
++.++.. .++|||||||++|++++++++|.+.+.++.+.+++++++.++++..+.-+
T Consensus 162 ~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK14116 162 FWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVV 223 (228)
T ss_pred HHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCCcc
Confidence 9988542 27899999999999999999999999999999999999999988765443
No 6
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=1.9e-38 Score=285.23 Aligned_cols=184 Identities=25% Similarity=0.326 Sum_probs=165.3
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeec
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWK 223 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~ 223 (366)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|+... ++.|||||+.||+|||+.+ +.++..++
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 79 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKDLS--IHAIYSSPSERTLHTAELIKGERDIPIIADE 79 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhcCCC--CCEEEECCcHHHHHHHHHHHhcCCCCceECc
Confidence 4789999999999999999998 99999999999999999998654 4599999999999999988 34788999
Q ss_pred cccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHH
Q psy9912 224 ALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLL 300 (366)
Q Consensus 224 ~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~ 300 (366)
.|+|+++|.|+|++..++.+.||+.+..|..++..+.+|+|||+.|+..|+..++.++.+. ++|||||||++|++++
T Consensus 80 ~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~~ 159 (203)
T PRK13463 80 HFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLV 159 (203)
T ss_pred CceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHHH
Confidence 9999999999999999999999999988888888889999999999999999999988653 6899999999999999
Q ss_pred HHHhcCCCCCCCCcc-cCCceEEEEEEecCccEEEE
Q psy9912 301 AYFLDKSADELPYLQ-VPLHTIIKLTPVAYGCKMEM 335 (366)
Q Consensus 301 ~~~~~~~~~~~~~l~-~~~~~v~~l~~~~~~~~~~~ 335 (366)
++++|.+.+..+... +++++++.++++..++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 195 (203)
T PRK13463 160 GHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEVKQ 195 (203)
T ss_pred HHHhCCCHHHHhhccCccCceEEEEEEeCCcEEEEE
Confidence 999999988766653 68899999998766655543
No 7
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.3e-38 Score=289.57 Aligned_cols=182 Identities=22% Similarity=0.253 Sum_probs=158.7
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCce
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQE 220 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~ 220 (366)
|++|||||||||++|..++++| |.|||+.|++||+.++++|+..+.+++.|||||++||+|||+++. .++.
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~~~ 80 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVY 80 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCccHHHHHHHHHHHHhcccCCCCee
Confidence 3589999999999999999998 999999999999999999987666678999999999999999982 4678
Q ss_pred eeccccccccCccCCCCHHHHHhhCchHH-HhhhhCCC------------------------ccCCCCCCCHHHHHHHHH
Q psy9912 221 RWKALNEIDAGICEEMTYEQIAEKYPDDF-SARDCAKF------------------------TYRYPRGESYEDLVARLE 275 (366)
Q Consensus 221 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~-~~~~~~~~------------------------~~~~p~gES~~d~~~R~~ 275 (366)
.++.|+|+++|.|||++++++.+.+|+.+ ..|..+.. ...+|+|||+.++..|+.
T Consensus 81 ~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~ 160 (228)
T PRK14119 81 KSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVI 160 (228)
T ss_pred ECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHHH
Confidence 88999999999999999999999999863 33432211 123689999999999999
Q ss_pred HHHHHHHc-----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCcc
Q psy9912 276 PVIMELER-----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGC 331 (366)
Q Consensus 276 ~~i~~l~~-----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~ 331 (366)
+++.++.. +++|||||||++|++++++++|.+.+....+.+++++++.++.+....
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T PRK14119 161 PFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLE 221 (228)
T ss_pred HHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCCc
Confidence 99998632 268999999999999999999999998889999999999999876643
No 8
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=3.7e-38 Score=282.52 Aligned_cols=183 Identities=23% Similarity=0.271 Sum_probs=165.8
Q ss_pred eeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeecc
Q psy9912 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWKA 224 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~~ 224 (366)
++||||||||+.+|..++++| |.|||+.|++||+.+++.|+..+ ++.|||||+.||+|||+++ +.++.+++.
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~~~~--~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 78 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLRDVP--FDLVLCSELERAQHTARLVLSDRQLPVHIIPE 78 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHhCCC--CCEEEECchHHHHHHHHHHHhcCCCCceeChh
Confidence 479999999999999999998 99999999999999999998654 4599999999999999998 347889999
Q ss_pred ccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHHH
Q psy9912 225 LNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLA 301 (366)
Q Consensus 225 L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~~ 301 (366)
|+|+++|.|+|++..++...+|+.+..|..++....+|+|||+.|+..|+..++.++.+. ++|||||||++|+++++
T Consensus 79 L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l~~ 158 (199)
T PRK15004 79 LNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLIA 158 (199)
T ss_pred heeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHHHH
Confidence 999999999999999999999999888877776778899999999999999999999764 68999999999999999
Q ss_pred HHhcCCCCCCCCcccCCceEEEEEEecCccEEEE
Q psy9912 302 YFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEM 335 (366)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~ 335 (366)
+++|.+.+.+..+.+++++++.++++..++.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (199)
T PRK15004 159 RLLGMPAEAMWHFRVEQGCWSAIDINQGFATLRV 192 (199)
T ss_pred HHhCCCHHHHhccccCCceEEEEEecCCcEEEEE
Confidence 9999999988899999999999999765555443
No 9
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=3.6e-38 Score=288.43 Aligned_cols=187 Identities=25% Similarity=0.238 Sum_probs=162.5
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCce
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQE 220 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~ 220 (366)
|++|||||||||++|..++++| |.|||+.|++||+.++++|+..+..++.|||||++||+|||+++. .++.
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~ 80 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASDQLWVPVE 80 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHcCCCCCEEEECCcHHHHHHHHHHHHhcccCCCCce
Confidence 3689999999999999999999 999999999999999999987556677999999999999999762 4778
Q ss_pred eeccccccccCccCCCCHHHHHhhCchHH-HhhhhC------------------------CCccCCCCCCCHHHHHHHHH
Q psy9912 221 RWKALNEIDAGICEEMTYEQIAEKYPDDF-SARDCA------------------------KFTYRYPRGESYEDLVARLE 275 (366)
Q Consensus 221 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~-~~~~~~------------------------~~~~~~p~gES~~d~~~R~~ 275 (366)
.++.|+|+++|.|||++++++.+++|+.+ ..|..+ ...+.+|+|||+.++.+|+.
T Consensus 81 ~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~ 160 (230)
T PRK14117 81 KSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERAL 160 (230)
T ss_pred eCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 88999999999999999999999999863 333321 12346799999999999999
Q ss_pred HHHHHHH--c---CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEEEE
Q psy9912 276 PVIMELE--R---QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMI 336 (366)
Q Consensus 276 ~~i~~l~--~---~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~ 336 (366)
+++.++. . .++|||||||++|++++++++|.+.+....+.+++++++.|+++.....+..+
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~~~~ 226 (230)
T PRK14117 161 PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKEY 226 (230)
T ss_pred HHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCceeecc
Confidence 9999864 2 26899999999999999999999999888999999999999997776665544
No 10
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=3.4e-38 Score=287.87 Aligned_cols=183 Identities=27% Similarity=0.258 Sum_probs=164.3
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-----------
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP----------- 216 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~----------- 216 (366)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|+.. +++.|||||++||+|||+.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~~~--~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~ 78 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKDL--PIDCIFTSTLVRSLMTALLAMTNHSSGKIPYI 78 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhhcC--CCCEEEEcCcHHHHHHHHHHHHhhcccccccc
Confidence 4689999999999999999999 9999999999999999999875 456999999999999999763
Q ss_pred ----------------------CCceeeccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHH
Q psy9912 217 ----------------------APQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARL 274 (366)
Q Consensus 217 ----------------------~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~ 274 (366)
.++...+.|+|+++|.|+|++++++.+++|+.+..++.+++.+++|+|||+.|+..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~Rv 158 (228)
T PRK01112 79 VHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRT 158 (228)
T ss_pred cccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHHHH
Confidence 2566789999999999999999999999998877666767778999999999999999
Q ss_pred HHHHHHHH-c----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEE
Q psy9912 275 EPVIMELE-R----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKME 334 (366)
Q Consensus 275 ~~~i~~l~-~----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~ 334 (366)
.+++.++. + .++|||||||++|+++++++++.+.+..+.+.+|+++++.+.++..+.+.+
T Consensus 159 ~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK01112 159 LPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKH 223 (228)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcccc
Confidence 99998642 2 278999999999999999999999999999999999999999987776653
No 11
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1e-37 Score=284.98 Aligned_cols=179 Identities=25% Similarity=0.253 Sum_probs=156.6
Q ss_pred eeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCcee
Q psy9912 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQER 221 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~~ 221 (366)
|+|||||||||.+|..++++| |.|||+.|++||+.+++.|+.....++.|||||+.||+|||+.|. .++..
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~~ 80 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVK 80 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCeec
Confidence 479999999999999999999 999999999999999999987655677999999999999999983 36678
Q ss_pred eccccccccCccCCCCHHHHHhhCchHH-HhhhhCC------------------------CccCCCCCCCHHHHHHHHHH
Q psy9912 222 WKALNEIDAGICEEMTYEQIAEKYPDDF-SARDCAK------------------------FTYRYPRGESYEDLVARLEP 276 (366)
Q Consensus 222 ~~~L~E~~~G~~eg~~~~ei~~~~p~~~-~~~~~~~------------------------~~~~~p~gES~~d~~~R~~~ 276 (366)
++.|+|+++|.|||++++++.+.+|+.+ ..|..+. ....+|+|||+.++.+|+.+
T Consensus 81 ~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~ 160 (227)
T PRK14118 81 NWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLP 160 (227)
T ss_pred CCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHHHH
Confidence 8899999999999999999999999763 3333211 12457899999999999999
Q ss_pred HHHHHHc-----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecC
Q psy9912 277 VIMELER-----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 277 ~i~~l~~-----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~ 329 (366)
++.++.. .++|||||||++|++++++++|.+....+.+.+++++++.+..+..
T Consensus 161 ~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 161 FWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 9988642 2789999999999999999999999988999999999999998655
No 12
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=2.6e-37 Score=277.53 Aligned_cols=184 Identities=22% Similarity=0.257 Sum_probs=162.1
Q ss_pred CCCeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCc-eeecc
Q psy9912 148 IVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQ-ERWKA 224 (366)
Q Consensus 148 ~~~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~-~~~~~ 224 (366)
..+++||||||||+++|..++++| |.|||+.|++||+.+++.|+..+++.+.|||||+.||+|||+.++.++ ..++.
T Consensus 3 ~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 82 (203)
T PRK13462 3 VRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKLAGLTVDEVSGL 82 (203)
T ss_pred ccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECchHHHHHHHHHhcCcccccCcc
Confidence 356899999999999999999988 899999999999999999988766655899999999999999997665 67899
Q ss_pred ccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHHH
Q psy9912 225 LNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLA 301 (366)
Q Consensus 225 L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~~ 301 (366)
|+|+++|.|+|+++.++.+.+|+... | ...+|+|||+.++..|+..++.++... ++|||||||++|+++++
T Consensus 83 LrE~~~G~~eG~~~~ei~~~~~~~~~-~-----~~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ll~ 156 (203)
T PRK13462 83 LAEWDYGSYEGLTTPQIRESEPDWLV-W-----THGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAVIT 156 (203)
T ss_pred ccccCCccccCCcHHHHHHhCchHHh-h-----cCCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999997432 2 234589999999999999999998653 68999999999999999
Q ss_pred HHhcCCCCCCCCcccCCceEEEEEEecCccEEEEEe
Q psy9912 302 YFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMIK 337 (366)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~~ 337 (366)
++++.+++....+.+++++++.+++......+..++
T Consensus 157 ~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~ 192 (203)
T PRK13462 157 RWVELPLAEGSRFAMPTASIAICGFEHGVRQLSALG 192 (203)
T ss_pred HHhCCCHHHhhhcccCCceEEEEEeeCCceEEEeec
Confidence 999999888888999999999999977666655543
No 13
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-37 Score=279.40 Aligned_cols=180 Identities=27% Similarity=0.304 Sum_probs=158.6
Q ss_pred CCeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCc
Q psy9912 149 VPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQ 219 (366)
Q Consensus 149 ~~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~ 219 (366)
++++||||||||+++|..++++| |.|||+.|++||+.++++|++.+.+++.|||||+.||+|||++|. .++
T Consensus 1 ~~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 80 (206)
T PRK01295 1 MSRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLET 80 (206)
T ss_pred CCceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCCe
Confidence 46789999999999999999998 999999999999999999987666778999999999999999982 467
Q ss_pred eeeccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHH-HHHHc----CCeEEEEechH
Q psy9912 220 ERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVI-MELER----QGNVLVVSHQA 294 (366)
Q Consensus 220 ~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i-~~l~~----~~~vlIVsH~~ 294 (366)
..++.|+|+++|.|+|++++++.+.+|+....++.+++.+++|+|||+.|+..|+.+++ ..+.. +++|||||||+
T Consensus 81 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~ 160 (206)
T PRK01295 81 IRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGN 160 (206)
T ss_pred EECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChH
Confidence 88999999999999999999999999987655445556788999999999999999975 44532 27899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCcccCCceEEEEEEec
Q psy9912 295 VLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVA 328 (366)
Q Consensus 295 ~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~ 328 (366)
+|+++++++++.+.+..+.+.+.+++.+.+.++.
T Consensus 161 ~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
T PRK01295 161 SLRALVMVLDGLTPEQILKLELATGVPIVYRLNA 194 (206)
T ss_pred HHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecC
Confidence 9999999999999998888999888777776543
No 14
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=7.4e-37 Score=282.14 Aligned_cols=182 Identities=26% Similarity=0.330 Sum_probs=158.8
Q ss_pred CCCeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc-------CCC
Q psy9912 148 IVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC-------PAP 218 (366)
Q Consensus 148 ~~~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i-------~~~ 218 (366)
+++++||||||||+.+|..++++| |.|||+.|++||+.+++.|+..+..++.|||||+.||+|||+++ ..+
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~~~ 81 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAADRLWIP 81 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEecChHHHHHHHHHHHHhcccCCCC
Confidence 466899999999999999999998 99999999999999999998765567799999999999999987 236
Q ss_pred ceeeccccccccCccCCCCHHHHHhhCchH-HHhhhhCCCcc----------------------CCCCCCCHHHHHHHHH
Q psy9912 219 QERWKALNEIDAGICEEMTYEQIAEKYPDD-FSARDCAKFTY----------------------RYPRGESYEDLVARLE 275 (366)
Q Consensus 219 ~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~~~----------------------~~p~gES~~d~~~R~~ 275 (366)
+..++.|+|+++|.|+|++++++.+++|+. +..|..+.... .+|+|||+.++..|+.
T Consensus 82 i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv~ 161 (249)
T PRK14120 82 VRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFL 161 (249)
T ss_pred eEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHHHH
Confidence 788899999999999999999999999974 55444332111 2489999999999999
Q ss_pred HHHHHH--H---cCCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecC
Q psy9912 276 PVIMEL--E---RQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 276 ~~i~~l--~---~~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~ 329 (366)
.++.++ . ..++|||||||++|+++++++++.+.+....+.+++++++.+.++..
T Consensus 162 ~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 220 (249)
T PRK14120 162 PYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220 (249)
T ss_pred HHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCC
Confidence 998873 2 22789999999999999999999999999999999999999998664
No 15
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=273.96 Aligned_cols=183 Identities=37% Similarity=0.467 Sum_probs=170.9
Q ss_pred CCeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceee
Q psy9912 149 VPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERW 222 (366)
Q Consensus 149 ~~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~ 222 (366)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|....++++.|||||+.||+|||+.+ +.++..+
T Consensus 1 ~~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~~ 80 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELGLPLEVD 80 (208)
T ss_pred CceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCEEEECchHHHHHHHHHHHHhcCCCceec
Confidence 36799999999999999999998 99999999999999999999766777799999999999999998 3467889
Q ss_pred ccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHH
Q psy9912 223 KALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCL 299 (366)
Q Consensus 223 ~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l 299 (366)
+.|+|+++|.|+|++.+++.+.+|..+..|..+++.+.+|+|||+.++..|+.+++.++... ++|||||||++|++|
T Consensus 81 ~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~l 160 (208)
T COG0406 81 DRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRAL 160 (208)
T ss_pred CCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886 359999999999999
Q ss_pred HHHHhcCCCCCCCCcccCCceEEEEEEecCcc
Q psy9912 300 LAYFLDKSADELPYLQVPLHTIIKLTPVAYGC 331 (366)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~ 331 (366)
++++++.+......+.+++++++.+.++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~~ 192 (208)
T COG0406 161 LAYLLGLDLEELWRLRLDNASVTVLEFDDGRF 192 (208)
T ss_pred HHHhcCCChhhHHhcCCCCceEEEEEeeCCCc
Confidence 99999999887889999999999999988764
No 16
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=100.00 E-value=1.4e-36 Score=279.99 Aligned_cols=189 Identities=27% Similarity=0.310 Sum_probs=162.9
Q ss_pred eeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCcee
Q psy9912 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQER 221 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~~ 221 (366)
++|||||||||.+|..++++| |.|||+.|++||+.++++|+..++.++.|||||++||+|||+++. .++..
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i~~ 80 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQLWIPVKK 80 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCeee
Confidence 479999999999999999998 999999999999999999987666778999999999999999983 36677
Q ss_pred eccccccccCccCCCCHHHHHhhCchH-HHhhhhCCC------------------cc------CCCCCCCHHHHHHHHHH
Q psy9912 222 WKALNEIDAGICEEMTYEQIAEKYPDD-FSARDCAKF------------------TY------RYPRGESYEDLVARLEP 276 (366)
Q Consensus 222 ~~~L~E~~~G~~eg~~~~ei~~~~p~~-~~~~~~~~~------------------~~------~~p~gES~~d~~~R~~~ 276 (366)
.+.|+|+++|.|+|++++++.+.+|.. +..|..+.. .| .+|+|||+.++..|+..
T Consensus 81 ~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv~~ 160 (245)
T TIGR01258 81 SWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLP 160 (245)
T ss_pred CcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999975 333432210 12 37899999999999999
Q ss_pred HHHHHHc-----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEEEEeeC
Q psy9912 277 VIMELER-----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMIKLP 339 (366)
Q Consensus 277 ~i~~l~~-----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~~~~ 339 (366)
++.++.. .++|||||||++|+++++++++.+....+.+.+++++++.++++...-.+..+.+.
T Consensus 161 ~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (245)
T TIGR01258 161 YWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKHYYLG 228 (245)
T ss_pred HHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeeeeecC
Confidence 9988642 26899999999999999999999999999999999999999987766666655543
No 17
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.4e-36 Score=280.25 Aligned_cols=188 Identities=28% Similarity=0.330 Sum_probs=164.7
Q ss_pred eeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCcee
Q psy9912 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQER 221 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~~ 221 (366)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|+..+++++.|||||++||+|||++|. .++..
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~~~ 80 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPVEK 80 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCceE
Confidence 479999999999999999998 999999999999999999987777788999999999999999982 26788
Q ss_pred eccccccccCccCCCCHHHHHhhCchH-HHhhhhCC--------------------C----ccCCCCCCCHHHHHHHHHH
Q psy9912 222 WKALNEIDAGICEEMTYEQIAEKYPDD-FSARDCAK--------------------F----TYRYPRGESYEDLVARLEP 276 (366)
Q Consensus 222 ~~~L~E~~~G~~eg~~~~ei~~~~p~~-~~~~~~~~--------------------~----~~~~p~gES~~d~~~R~~~ 276 (366)
++.|+|+++|.|+|++++++.+.+|+. +..|..+. + ...+|+|||+.++..|+.+
T Consensus 81 ~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~ 160 (247)
T PRK14115 81 SWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLP 160 (247)
T ss_pred CccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999976 33333210 0 2357999999999999999
Q ss_pred HHHHHHc-----CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEEEEee
Q psy9912 277 VIMELER-----QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMIKL 338 (366)
Q Consensus 277 ~i~~l~~-----~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~~~ 338 (366)
++.++.. .++|||||||++|+++++++++.+......+.+++++++.++++.....+..+.+
T Consensus 161 ~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (247)
T PRK14115 161 YWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPIKHYYL 227 (247)
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEeeeEec
Confidence 9987532 2789999999999999999999999999999999999999999888877777765
No 18
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=4.4e-36 Score=270.06 Aligned_cols=181 Identities=24% Similarity=0.260 Sum_probs=159.0
Q ss_pred eEEEeeccccccccCCcccC---CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeecc
Q psy9912 152 TIYLTRHGESEHNLQGIIGG---DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWKA 224 (366)
Q Consensus 152 ~I~LvRHGes~~n~~~~~~g---D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~~ 224 (366)
+||||||||+.+|..++++| |.|||+.|++||++++++|+.. +++.|||||+.||+|||+++ +.++..++.
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 78 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLADL--PIAAIVSSPLERCRETAEPIAEARGLPPRVDER 78 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHhcC--CCCEEEeCcHHHHHHHHHHHHHhcCCCceECcc
Confidence 58999999999999999888 4899999999999999999864 45699999999999999998 458899999
Q ss_pred ccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHc-------C-CeEEEEechHHH
Q psy9912 225 LNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELER-------Q-GNVLVVSHQAVL 296 (366)
Q Consensus 225 L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~-------~-~~vlIVsH~~~i 296 (366)
|+|+++|.|+|++++++.+. ..+..|..++..+.+|+|||+.++..|+.+++.++.. . ++|||||||++|
T Consensus 79 L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~i 156 (204)
T TIGR03848 79 LGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVI 156 (204)
T ss_pred cccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHH
Confidence 99999999999999998753 3455566667778899999999999999999988742 2 679999999999
Q ss_pred HHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEEEE
Q psy9912 297 RCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMI 336 (366)
Q Consensus 297 r~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~~ 336 (366)
++++++++|.+.+.+..+.++++++++|.+...+..+..+
T Consensus 157 r~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~~~ 196 (204)
T TIGR03848 157 KSVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVLRV 196 (204)
T ss_pred HHHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEEEe
Confidence 9999999999999888999999999999998776655443
No 19
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=5.2e-36 Score=271.77 Aligned_cols=178 Identities=24% Similarity=0.267 Sum_probs=154.7
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeec
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWK 223 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~ 223 (366)
|++||||||||+++|..++++| |.|||+.|++||+.++++|+..++ +.|||||+.||+|||+++ +.++..++
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~~~~~--~~I~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 78 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGI--THIISSDLGRTRRTAEIIAQACGCDIIFDP 78 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHhcCCC--CEEEECCcHHHHHHHHHHHHhcCCCeeECh
Confidence 4689999999999999988887 999999999999999999987654 599999999999999987 45788899
Q ss_pred cccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHH
Q psy9912 224 ALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLL 300 (366)
Q Consensus 224 ~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~ 300 (366)
.|+|+++|.|+|++++++...++.+...+...+..+.+|+|||+.++..|+..++.++... ++|||||||++|++++
T Consensus 79 ~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~l~ 158 (215)
T PRK03482 79 RLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGCLV 158 (215)
T ss_pred hccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHH
Confidence 9999999999999999987654433322333344577899999999999999999998653 6899999999999999
Q ss_pred HHHhcCCCCCCCCcccCCceEEEEEEecC
Q psy9912 301 AYFLDKSADELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~v~~l~~~~~ 329 (366)
+++++.+.+....+.+++++++.+.+...
T Consensus 159 ~~l~~~~~~~~~~~~~~n~sis~~~~~~~ 187 (215)
T PRK03482 159 STILGLPAWAERRLRLRNCSISRVDYQES 187 (215)
T ss_pred HHHhCCChhhhhccCCCCcEEEEEEEeCC
Confidence 99999999888888999999999998753
No 20
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=4e-36 Score=264.08 Aligned_cols=168 Identities=31% Similarity=0.433 Sum_probs=152.9
Q ss_pred EEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC----CCceeecccc
Q psy9912 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP----APQERWKALN 226 (366)
Q Consensus 153 I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~----~~~~~~~~L~ 226 (366)
||||||||+.+|..+++ | |+|||+.|++||+.+++.|+.. .++.|||||+.||+|||+++. .++..++.|+
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~L~ 77 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLADV--PFDAVYSSPLSRCRELAEILAERRGLPIIKDPRLR 77 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhcCC--CCCEEEECchHHHHHHHHHHHhhcCCCceECCccc
Confidence 69999999999999988 5 9999999999999999999754 456999999999999999983 5788999999
Q ss_pred ccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHHHHH
Q psy9912 227 EIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYF 303 (366)
Q Consensus 227 E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~~~~ 303 (366)
|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++..|+.+++.++.+. ++|||||||++++++++++
T Consensus 78 E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~~~ 156 (177)
T TIGR03162 78 EMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHL 156 (177)
T ss_pred cccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 99999999999999999998 5666777777788999999999999999999998753 7899999999999999999
Q ss_pred hcCCCCCCCCcccCCceEEEE
Q psy9912 304 LDKSADELPYLQVPLHTIIKL 324 (366)
Q Consensus 304 ~~~~~~~~~~l~~~~~~v~~l 324 (366)
+|.+++..+.+.+++++++.|
T Consensus 157 ~~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 157 LGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred hCCCHHHHhccccCCeeEEeC
Confidence 999999888899999998764
No 21
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.97 E-value=2.8e-31 Score=227.68 Aligned_cols=148 Identities=41% Similarity=0.604 Sum_probs=133.4
Q ss_pred eEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhc----CCCceeeccc
Q psy9912 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATC----PAPQERWKAL 225 (366)
Q Consensus 152 ~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i----~~~~~~~~~L 225 (366)
+|||||||++.+|..+.+++ |+|||+.|+.||+.+++.|......++.|||||+.||+|||+.+ +.++..++.|
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~~l 80 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAERDIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDPRL 80 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHTTSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEGGG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhcccccccccCceEEecCCcchhhhhhchhhccccccccccccc
Confidence 69999999999999988888 66899999999999999999666677799999999999999998 3578999999
Q ss_pred cccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHc----CCeEEEEechHHHHHH
Q psy9912 226 NEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELER----QGNVLVVSHQAVLRCL 299 (366)
Q Consensus 226 ~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~----~~~vlIVsH~~~ir~l 299 (366)
.|+++|.|+|++..++.+.+|..+..|..+.+.+.+|+|||+.++..|+..++.++.. .++|+|||||++|++|
T Consensus 81 ~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 81 REIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp SCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 9999999999999999999998888888888889999999999999999999999984 2899999999999986
No 22
>KOG0235|consensus
Probab=99.97 E-value=1.1e-30 Score=231.61 Aligned_cols=181 Identities=28% Similarity=0.311 Sum_probs=160.0
Q ss_pred CCCeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CC
Q psy9912 148 IVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------AP 218 (366)
Q Consensus 148 ~~~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~ 218 (366)
+.+.+++|||||||+||.+++++| |.+||+.|.+||+.+++.|...+++++.+|||+++||.|||+.|. .|
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~~~~~~~p 82 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEELKQKKVP 82 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhcCCcccEEecCHHHHHHHHHHHHHHhhccCCcc
Confidence 356799999999999999999999 999999999999999999999999999999999999999999982 47
Q ss_pred ceeeccccccccCccCCCCHHHHHhhCchH--HH-hhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC-----CeEEEE
Q psy9912 219 QERWKALNEIDAGICEEMTYEQIAEKYPDD--FS-ARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ-----GNVLVV 290 (366)
Q Consensus 219 ~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~--~~-~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~-----~~vlIV 290 (366)
+.....|+|.++|+++|+...|+.+++|+. .. .+..+.....+|.|||..++..|+.+++.+.... ++|||+
T Consensus 83 v~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~ 162 (214)
T KOG0235|consen 83 VLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIV 162 (214)
T ss_pred eEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEE
Confidence 888999999999999999999999999987 33 3333323455789999999999999999975432 899999
Q ss_pred echHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEec
Q psy9912 291 SHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVA 328 (366)
Q Consensus 291 sH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~ 328 (366)
+||..+|+++.++.|.+.+.+-.+++|.+-.+.+..+.
T Consensus 163 aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~ 200 (214)
T KOG0235|consen 163 AHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDK 200 (214)
T ss_pred cCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccc
Confidence 99999999999999999999999999998877776543
No 23
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.97 E-value=2e-30 Score=238.16 Aligned_cols=173 Identities=24% Similarity=0.249 Sum_probs=146.8
Q ss_pred cccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCceeeccccccccCcc
Q psy9912 163 HNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQERWKALNEIDAGIC 233 (366)
Q Consensus 163 ~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~~~~~L~E~~~G~~ 233 (366)
+|..++++| |.|||+.|++||+.+++.|+..++.++.|||||+.||+|||+++. .++..++.|+|+++|.|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G~~ 80 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYGAL 80 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccccc
Confidence 477888888 999999999999999999987777788999999999999999983 36778899999999999
Q ss_pred CCCCHHHHHhhCchHHHhhhhCCC-------------------------ccCCCCCCCHHHHHHHHHHHHHHHH-c----
Q psy9912 234 EEMTYEQIAEKYPDDFSARDCAKF-------------------------TYRYPRGESYEDLVARLEPVIMELE-R---- 283 (366)
Q Consensus 234 eg~~~~ei~~~~p~~~~~~~~~~~-------------------------~~~~p~gES~~d~~~R~~~~i~~l~-~---- 283 (366)
+|++++++.+.+|+.+..++.+.+ .+++|+|||+.++..|+.+++.++. .
T Consensus 81 EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~ 160 (236)
T PTZ00123 81 QGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILA 160 (236)
T ss_pred cCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999986432222111 1345899999999999999998753 1
Q ss_pred CCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEEEE
Q psy9912 284 QGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEM 335 (366)
Q Consensus 284 ~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~~~ 335 (366)
.++|||||||++|+++++++++.+++....+.+++++++.++++..-..+..
T Consensus 161 ~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 212 (236)
T PTZ00123 161 GKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDENLKPIKK 212 (236)
T ss_pred CCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCCEeee
Confidence 2689999999999999999999999989999999999999999765444443
No 24
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.97 E-value=2e-30 Score=223.11 Aligned_cols=144 Identities=36% Similarity=0.412 Sum_probs=124.1
Q ss_pred eEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcC-CCCCcEEEecchHHHHHHHHhcCC---Cceeeccc
Q psy9912 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQ-DIPGLRIWTSWLKRTIQTVATCPA---PQERWKAL 225 (366)
Q Consensus 152 ~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~-~~~~~~i~tSpl~Ra~qTA~~i~~---~~~~~~~L 225 (366)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++.. .....+.|
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~L 80 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIALGLGEVDPRL 80 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCEEEeCchHHHHHHHHHHHHhcCCCCCChhh
Confidence 58999999999998887775 9999999999999999999875 356679999999999999999832 12477899
Q ss_pred cccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHc-----CCeEEEEechHHHHHH
Q psy9912 226 NEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELER-----QGNVLVVSHQAVLRCL 299 (366)
Q Consensus 226 ~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~-----~~~vlIVsH~~~ir~l 299 (366)
+|+++|.|+|++++++.+.+|..+.. ++.+.+|+|||+.++..|+.+++.++.. .++|||||||++|+++
T Consensus 81 ~E~~~G~~~g~~~~~~~~~~~~~~~~----~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 81 RERDYGAWEGLTKEEERAKAWTRPAD----WLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred hhcccceecCCcHHHHHHHHHHHHhc----cCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 99999999999999998887775432 3567889999999999999999999864 2689999999999864
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=224.09 Aligned_cols=181 Identities=27% Similarity=0.323 Sum_probs=161.0
Q ss_pred CeeEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-------CCce
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-------APQE 220 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-------~~~~ 220 (366)
+++++|+|||||+||..+.+.| |.+||++|..+|...|+.|++.++.+|.+|||-+.||++|++++. .|+.
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~ 80 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVI 80 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchh
Confidence 4689999999999999999999 999999999999999999999999999999999999999999973 3666
Q ss_pred eeccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCC-------------------------CCCCHHHHHHHHH
Q psy9912 221 RWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYP-------------------------RGESYEDLVARLE 275 (366)
Q Consensus 221 ~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p-------------------------~gES~~d~~~R~~ 275 (366)
...+|+|.++|.++|+...+..++|.++....+..+|...+| .+||..++..|+.
T Consensus 81 kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~ 160 (230)
T COG0588 81 KSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVL 160 (230)
T ss_pred hHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhh
Confidence 667999999999999999999999998876555444545444 4599999999999
Q ss_pred HHHHHH-----HcCCeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCc
Q psy9912 276 PVIMEL-----ERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYG 330 (366)
Q Consensus 276 ~~i~~l-----~~~~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~ 330 (366)
|++.+. ..+++|||++||..+|+|+.|+.|++.+++..+++|++.-+.++++...
T Consensus 161 Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l 220 (230)
T COG0588 161 PYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNL 220 (230)
T ss_pred HHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCC
Confidence 998763 3348999999999999999999999999999999999998888877554
No 26
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.92 E-value=3.2e-24 Score=202.81 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=121.1
Q ss_pred eeEEEeeccccccccCCcccCCCC---CCHhhHHHHHHHHHHHhcCC------CCCcEEEecchHHHHHHHHhcC-----
Q psy9912 151 RTIYLTRHGESEHNLQGIIGGDSS---LSERGQLYSQALGKFIAQQD------IPGLRIWTSWLKRTIQTVATCP----- 216 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~gD~~---LT~~G~~qA~~l~~~l~~~~------~~~~~i~tSpl~Ra~qTA~~i~----- 216 (366)
++||||||||+..+ + ..|.+ ||+.|++||+.++++|++.. ..++.|||||+.||+|||++|.
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 89999999996543 2 23444 99999999999999998741 2567999999999999999983
Q ss_pred CCceeeccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC------CeEEEE
Q psy9912 217 APQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ------GNVLVV 290 (366)
Q Consensus 217 ~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~------~~vlIV 290 (366)
.++..++.|+| |++..+. | ....+.+|++|+ .+...|+..++.++... +.+|||
T Consensus 179 ~~v~~d~~LrE-------G~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAE-------GVPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCccccc-------CCccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 46778888888 2332211 1 011234455566 66799999999988632 458999
Q ss_pred echHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecC
Q psy9912 291 SHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 291 sH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~ 329 (366)
|||++|+++++++++.+.+.+..+.+++++++.|.+.+.
T Consensus 239 sHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~ 277 (299)
T PTZ00122 239 CHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSE 277 (299)
T ss_pred eCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCC
Confidence 999999999999999999888888999999999998754
No 27
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.92 E-value=2.8e-24 Score=184.06 Aligned_cols=134 Identities=43% Similarity=0.540 Sum_probs=115.1
Q ss_pred eEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcC-----CCceeecc
Q psy9912 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCP-----APQERWKA 224 (366)
Q Consensus 152 ~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~-----~~~~~~~~ 224 (366)
+|||+|||++.++..+..++ |.|||+.|++||+.++++|......++.|||||+.||+|||+.+. .++...+.
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~~~ 80 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVDPR 80 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeCcc
Confidence 58999999999988765544 899999999999999999998766677999999999999999983 24455555
Q ss_pred ccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHc---CCeEEEEechHHHHHHHH
Q psy9912 225 LNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELER---QGNVLVVSHQAVLRCLLA 301 (366)
Q Consensus 225 L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~---~~~vlIVsH~~~ir~l~~ 301 (366)
|+| .|+.+++.++.+ .++|+||||+++|+.+++
T Consensus 81 L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~~~ 116 (153)
T cd07067 81 LRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGGVLRALLA 116 (153)
T ss_pred chH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHH
Confidence 555 788888888765 379999999999999999
Q ss_pred HHhcCCCCCCCCcccCCceEEEEEEecC
Q psy9912 302 YFLDKSADELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~v~~l~~~~~ 329 (366)
++++.+....+.+.+++++++.+.+...
T Consensus 117 ~l~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 117 YLLGLSDEDILRLNLPNGSISVLELDEN 144 (153)
T ss_pred HHhCCCHHHHHhcCCCCceEEEEEEeCC
Confidence 9999988877788999999999998764
No 28
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.85 E-value=6.6e-21 Score=162.45 Aligned_cols=136 Identities=38% Similarity=0.511 Sum_probs=108.2
Q ss_pred eEEEeeccccccccCCcccC--CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCceeeccccccc
Q psy9912 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEID 229 (366)
Q Consensus 152 ~I~LvRHGes~~n~~~~~~g--D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~~~~~~L~E~~ 229 (366)
+|||+|||++.++..+..++ |.|||+.|++||+.+++.|+....+++.|||||+.||+|||+.+.........+. ..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~-~~ 79 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVE-VD 79 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHHHHHHhcCCCCeE-EC
Confidence 48999999999988876444 9999999999999999999987555679999999999999999843210000000 00
Q ss_pred cCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC-----CeEEEEechHHHHHHHHHHh
Q psy9912 230 AGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ-----GNVLVVSHQAVLRCLLAYFL 304 (366)
Q Consensus 230 ~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~-----~~vlIVsH~~~ir~l~~~~~ 304 (366)
+. .|+.+++.++... +++++|||+++|+.++.+++
T Consensus 80 --------------------------------~~--------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~ 119 (153)
T cd07040 80 --------------------------------PR--------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALL 119 (153)
T ss_pred --------------------------------HH--------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 00 7777777776652 79999999999999999999
Q ss_pred cCCCCCCCCcccCCceEEEEEEec
Q psy9912 305 DKSADELPYLQVPLHTIIKLTPVA 328 (366)
Q Consensus 305 ~~~~~~~~~l~~~~~~v~~l~~~~ 328 (366)
+.+....+.+.++++++..++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ 143 (153)
T cd07040 120 GLSDEEILSLNLPNGSILVLELDE 143 (153)
T ss_pred CcCHHHhccccCCCCceEEEEEcC
Confidence 988877778889999999998754
No 29
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.84 E-value=9.1e-20 Score=156.33 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=101.5
Q ss_pred eeEEEeeccccccccCCcccCCCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCceeecccccccc
Q psy9912 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEIDA 230 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~~~~~~L~E~~~ 230 (366)
++|||||||+++++.. -..|.|||+.|++||+.++++|+..+..++.|||||+.||+|||+.+....... ...
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~-----~~~ 73 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLNLP-----SSA 73 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHHcCCC-----cce
Confidence 4799999999998765 223889999999999999999998777788999999999999999984321100 001
Q ss_pred CccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC--CeEEEEechHHHHHHHHHHhcCCC
Q psy9912 231 GICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLLAYFLDKSA 308 (366)
Q Consensus 231 G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~--~~vlIVsH~~~ir~l~~~~~~~~~ 308 (366)
..++++ +|+ ++..++. .++.++... ++|+||+|++.+..++.++.+.+.
T Consensus 74 ~~~~~l------------------------~p~-~~~~~~~----~~l~~~~~~~~~~vliVgH~P~i~~l~~~l~~~~~ 124 (152)
T TIGR00249 74 EVLEGL------------------------TPC-GDIGLVS----DYLEALTNEGVASVLLVSHLPLVGYLVAELCPGEN 124 (152)
T ss_pred EEccCc------------------------CCC-CCHHHHH----HHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhCCCC
Confidence 111221 132 3334433 334444332 689999999999999999998532
Q ss_pred CCCCCcccCCceEEEEEEecCc
Q psy9912 309 DELPYLQVPLHTIIKLTPVAYG 330 (366)
Q Consensus 309 ~~~~~l~~~~~~v~~l~~~~~~ 330 (366)
. ..+|.+++..|+++..+
T Consensus 125 ~----~~~~~~~~~~l~~~~~~ 142 (152)
T TIGR00249 125 P----IMFTTGAIASLLWDESK 142 (152)
T ss_pred C----CcCcceeEEEEEEecCC
Confidence 2 46899999999987444
No 30
>PRK06193 hypothetical protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=159.61 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=106.8
Q ss_pred CCeeEEEeeccccccccCCcccC-------CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCcee
Q psy9912 149 VPRTIYLTRHGESEHNLQGIIGG-------DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQER 221 (366)
Q Consensus 149 ~~~~I~LvRHGes~~n~~~~~~g-------D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~~~ 221 (366)
...+|||||||++++|..+.+.| |.|||++|++||+.++++|+..++.++.|||||+.||+|||+.+......
T Consensus 41 ~~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~~~~~d~V~sSpl~Ra~qTA~il~~~~~~ 120 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHEK 120 (206)
T ss_pred cCCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhccccc
Confidence 45799999999999888776655 35999999999999999999888788899999999999999987422211
Q ss_pred eccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEechHHHHHHH
Q psy9912 222 WKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ-GNVLVVSHQAVLRCLL 300 (366)
Q Consensus 222 ~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~-~~vlIVsH~~~ir~l~ 300 (366)
...+++. ....|.+|++..+..|+..+|.++... ++||||||+..++.+.
T Consensus 121 ~~~l~~~-----------------------------~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~l~ 171 (206)
T PRK06193 121 EIRLNFL-----------------------------NSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEAAT 171 (206)
T ss_pred Ccccccc-----------------------------cccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHHHh
Confidence 0000000 011124578888889999999998765 8899999999999998
Q ss_pred HHHhcCCCCCCCCcccCCceEEEEEEecCc
Q psy9912 301 AYFLDKSADELPYLQVPLHTIIKLTPVAYG 330 (366)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~ 330 (366)
+++.+ +.++.+.+.+.+.|
T Consensus 172 g~~~~-----------~~g~~~~~~~~~~g 190 (206)
T PRK06193 172 GIYPE-----------PEGEAAVFEPLGGE 190 (206)
T ss_pred CCCCc-----------cCccEEEEEeCCCC
Confidence 86544 24455556554444
No 31
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.79 E-value=2.4e-18 Score=148.55 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=94.8
Q ss_pred eeEEEeeccccccccCCcccCCCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCceeecccccccc
Q psy9912 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEIDA 230 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~~~~~~L~E~~~ 230 (366)
++|||||||++.++.. ...|.|||++|++||+.++.+|...+..++.|||||+.||+|||+++...........+.
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~~~~~~~~~-- 76 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEVVGECLNLPASAEVL-- 76 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCHHHHHHHHHHHHHHhCCCCceEEc--
Confidence 4799999999998742 112679999999999999999998777788999999999999999884211000000000
Q ss_pred CccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC--CeEEEEechHHHHHHHHHHhcCCC
Q psy9912 231 GICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLLAYFLDKSA 308 (366)
Q Consensus 231 G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~--~~vlIVsH~~~ir~l~~~~~~~~~ 308 (366)
+ .-+|++ +.. .+..++..+... ++|+||||.+.+..+..++.+...
T Consensus 77 ---~------------------------~l~~~~-~~~----~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~L~~~~~ 124 (159)
T PRK10848 77 ---P------------------------ELTPCG-DVG----LVSAYLQALANEGVASVLVISHLPLVGYLVAELCPGET 124 (159)
T ss_pred ---c------------------------CCCCCC-CHH----HHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHHHhCCCC
Confidence 0 011221 111 222233333222 699999999999999999987432
Q ss_pred CCCCCcccCCceEEEEEEec
Q psy9912 309 DELPYLQVPLHTIIKLTPVA 328 (366)
Q Consensus 309 ~~~~~l~~~~~~v~~l~~~~ 328 (366)
. + .+|++++..+++..
T Consensus 125 ~--~--~~~t~~i~~l~~~~ 140 (159)
T PRK10848 125 P--P--MFTTSAIACVTLDE 140 (159)
T ss_pred C--C--CcCCceEEEEEecc
Confidence 2 1 38999999999874
No 32
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.78 E-value=2.1e-18 Score=147.42 Aligned_cols=142 Identities=25% Similarity=0.300 Sum_probs=105.0
Q ss_pred CeeEEEeeccccccccCCcccCCCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCceeeccccccc
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEID 229 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~~~~~~L~E~~ 229 (366)
+++|||+|||++++...+.-..|.|||++|+++|+.+|++|+++++.+|.|+|||..||+|||+.+...+- +-.
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~------~~~ 74 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLG------EKK 74 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhC------ccc
Confidence 57999999999999877654559999999999999999999999999999999999999999998843221 100
Q ss_pred cCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEechHHHHHHHHHHhcCCC
Q psy9912 230 AGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ-GNVLVVSHQAVLRCLLAYFLDKSA 308 (366)
Q Consensus 230 ~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~-~~vlIVsH~~~ir~l~~~~~~~~~ 308 (366)
...+++.+ |++.+ .-+...+.++... .++++|+|.+.+..+...+.+.
T Consensus 75 ~~~~~~l~------------------------p~~d~-----~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~~~-- 123 (163)
T COG2062 75 VEVFEELL------------------------PNGDP-----GTVLDYLEALGDGVGSVLLVGHNPLLEELALLLAGG-- 123 (163)
T ss_pred ceeccccC------------------------CCCCH-----HHHHHHHHHhcccCceEEEECCCccHHHHHHHHccc--
Confidence 11111111 22211 1122333344333 7899999999999999999885
Q ss_pred CCCCCcccCCceEEEEEEecC
Q psy9912 309 DELPYLQVPLHTIIKLTPVAY 329 (366)
Q Consensus 309 ~~~~~l~~~~~~v~~l~~~~~ 329 (366)
.-....+|.+++..|++++.
T Consensus 124 -~~~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 124 -ARLPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred -cccccCCCcccEEEEEeccc
Confidence 22345799999999999854
No 33
>KOG4754|consensus
Probab=99.73 E-value=4.3e-17 Score=141.75 Aligned_cols=157 Identities=25% Similarity=0.298 Sum_probs=119.9
Q ss_pred CCCeeEEEeeccccccccCCccc------C---CCCCCHhhHHHHHHHHHHHhcCCCC--CcEEEecchHHHHHHHHhc-
Q psy9912 148 IVPRTIYLTRHGESEHNLQGIIG------G---DSSLSERGQLYSQALGKFIAQQDIP--GLRIWTSWLKRTIQTVATC- 215 (366)
Q Consensus 148 ~~~~~I~LvRHGes~~n~~~~~~------g---D~~LT~~G~~qA~~l~~~l~~~~~~--~~~i~tSpl~Ra~qTA~~i- 215 (366)
..-++||||||||..+|+.+.-. - |+.||+.|++|+.+++..+.+.++. +..|++||++||+||+.+.
T Consensus 12 ~r~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f 91 (248)
T KOG4754|consen 12 NRCKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAF 91 (248)
T ss_pred CcceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHh
Confidence 34689999999999999876321 1 8999999999999999998776665 7799999999999999874
Q ss_pred ----------CCCceeeccc----cccccCcc--C-CCCHHHHHhhCchHHH-hhhhC-CCccCCCCCCCHHHHHHHHHH
Q psy9912 216 ----------PAPQERWKAL----NEIDAGIC--E-EMTYEQIAEKYPDDFS-ARDCA-KFTYRYPRGESYEDLVARLEP 276 (366)
Q Consensus 216 ----------~~~~~~~~~L----~E~~~G~~--e-g~~~~ei~~~~p~~~~-~~~~~-~~~~~~p~gES~~d~~~R~~~ 276 (366)
..|+.+.|.+ +| ..|++ + +....+.++.||...- .-..+ .+.+++--.|++.+...|-..
T Consensus 92 ~~~~~e~g~~~~p~~vsp~~i~~~rE-~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re 170 (248)
T KOG4754|consen 92 GGYLAEDGEDPAPVKVSPPFIAVCRE-TLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSRE 170 (248)
T ss_pred cceeccCCCcCCceeecchHHHHHHH-HhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHH
Confidence 1256667777 55 13543 3 5567788888886432 11111 122333357999999999999
Q ss_pred HHHHHHcC--CeEEEEechHHHHHHHHHHhc
Q psy9912 277 VIMELERQ--GNVLVVSHQAVLRCLLAYFLD 305 (366)
Q Consensus 277 ~i~~l~~~--~~vlIVsH~~~ir~l~~~~~~ 305 (366)
++..+... +.|.||+|++.|+.++..+..
T Consensus 171 ~~~~l~~r~ek~iavvths~fl~~llk~i~k 201 (248)
T KOG4754|consen 171 FLEWLAKRPEKEIAVVTHSGFLRSLLKKIQK 201 (248)
T ss_pred HHHHHHhCccceEEEEEehHHHHHHHHHhcc
Confidence 99999876 789999999999999987743
No 34
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.71 E-value=1.8e-16 Score=140.27 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=90.6
Q ss_pred CeeEEEeeccccccccCCcccC-CCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCC--Cceeecccc
Q psy9912 150 PRTIYLTRHGESEHNLQGIIGG-DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPA--PQERWKALN 226 (366)
Q Consensus 150 ~~~I~LvRHGes~~n~~~~~~g-D~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~--~~~~~~~L~ 226 (366)
.++|||+||||+.....+.... +.|||++|++||+.++++|++.... +.|||||+.||+|||+.+.. ++..++.|.
T Consensus 54 ~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~~~~-d~I~sSpa~Ra~qTAe~ia~~~~v~~~~~Ly 132 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSADIPD-YDLYSSNTVRTIQSATWFSAGKKLTVDKRLS 132 (201)
T ss_pred CCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-CEEEECCCHHHHHHHHHHhcCCCcEecHHHh
Confidence 3579999999983222121111 3699999999999999999875443 69999999999999999843 344444444
Q ss_pred ccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEechHHHHHHHHHHhcC
Q psy9912 227 EIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDK 306 (366)
Q Consensus 227 E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~~~vlIVsH~~~ir~l~~~~~~~ 306 (366)
|.+.+ ....+..++.+... ++||||+|++.+..+.....+.
T Consensus 133 e~~~~--------------------------------------~~~~i~~~i~~~~~-~tVLIVGHnp~i~~La~~~~~~ 173 (201)
T PRK15416 133 DCGNG--------------------------------------IYSAIKDLQRKSPD-KNIVIFTHNHCLTYIAKDKRGV 173 (201)
T ss_pred hcCch--------------------------------------hHHHHHHHHHhCCC-CEEEEEeCchhHHHHHHHhcCC
Confidence 43211 11222233333322 6899999999999999976643
Q ss_pred CCCCCCCcccCCceEEEEEEecCccE
Q psy9912 307 SADELPYLQVPLHTIIKLTPVAYGCK 332 (366)
Q Consensus 307 ~~~~~~~l~~~~~~v~~l~~~~~~~~ 332 (366)
+ ++++.+..|.....+..
T Consensus 174 ~--------~~~~~~~~l~~~~~~~~ 191 (201)
T PRK15416 174 K--------FKPDYLDALVMHVEKGK 191 (201)
T ss_pred C--------CCCCceEEEEEEccCcE
Confidence 2 55666666666544443
No 35
>KOG4609|consensus
Probab=99.69 E-value=1.6e-16 Score=138.22 Aligned_cols=160 Identities=24% Similarity=0.280 Sum_probs=116.7
Q ss_pred CCeeEEEeeccccccccCCcccCCCCCCHhhHHHHHHHHHHHhcCCCCCcEEEecchHHHHHHHHhcCCCc------eee
Q psy9912 149 VPRTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQ------ERW 222 (366)
Q Consensus 149 ~~~~I~LvRHGes~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~~~~~~~i~tSpl~Ra~qTA~~i~~~~------~~~ 222 (366)
..+.|+||||||-... +.-..||+.|++||+.+|+.|.+.+++++.|..|++.||.+||.+|...+ ...
T Consensus 93 atRhI~LiRHgeY~~~-----g~~~hLTelGReQAE~tGkRL~elglk~d~vv~StM~RA~ETadIIlk~l~d~lk~~s~ 167 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD-----GSLEHLTELGREQAELTGKRLAELGLKFDKVVASTMVRATETADIILKHLPDDLKRVSC 167 (284)
T ss_pred hhceEEEEeccceecc-----CchhhcchhhHHHHHHHhHHHHHcCCchhhhhhhhhhhhHHHHHHHHHhCCCccceecc
Confidence 4689999999996532 22248999999999999999999999999999999999999999985422 233
Q ss_pred ccccccccCccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHc--------CCeEEEEechH
Q psy9912 223 KALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELER--------QGNVLVVSHQA 294 (366)
Q Consensus 223 ~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~--------~~~vlIVsH~~ 294 (366)
+.|.| |.+ +|..-... +++ |-.--|..=-.|++..+..... +.--|||+|+.
T Consensus 168 ~ll~E-------GaP-------~ppdPp~k-----~wr-p~~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~HaN 227 (284)
T KOG4609|consen 168 PLLRE-------GAP-------YPPDPPVK-----HWR-PLDPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCHAN 227 (284)
T ss_pred ccccc-------CCC-------CCCCCCcc-----cCC-ccChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEeecc
Confidence 34443 222 21110000 011 1111222234677777766532 15689999999
Q ss_pred HHHHHHHHHhcCCCCCCCCcccCCceEEEEEEecCccEE
Q psy9912 295 VLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKM 333 (366)
Q Consensus 295 ~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~~~~~~~~ 333 (366)
|||.+++..+..|++.|.++++.+|+++-|+..+.|...
T Consensus 228 VIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vs 266 (284)
T KOG4609|consen 228 VIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVS 266 (284)
T ss_pred hhhhhhhhhhcCCcchhheecccCcceEEEEEccCCcEE
Confidence 999999999999999999999999999999998776543
No 36
>KOG3734|consensus
Probab=99.69 E-value=2.7e-16 Score=143.87 Aligned_cols=175 Identities=24% Similarity=0.245 Sum_probs=124.4
Q ss_pred CCCCeeEEEeeccccccccC------------C---------------ccc---C---CCCCCHhhHHHHHHHHHHHhcC
Q psy9912 147 HIVPRTIYLTRHGESEHNLQ------------G---------------IIG---G---DSSLSERGQLYSQALGKFIAQQ 193 (366)
Q Consensus 147 ~~~~~~I~LvRHGes~~n~~------------~---------------~~~---g---D~~LT~~G~~qA~~l~~~l~~~ 193 (366)
....+.|+++||||+..+.- + +.. | |+|||..|..||+..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 35678999999999876221 1 111 1 8999999999999999999999
Q ss_pred CCCCcEEEecchHHHHHHHHhc----C----CCceeecccccccc----CccC-CCCHHHHHhhCchHHHhhhhCCCccC
Q psy9912 194 DIPGLRIWTSWLKRTIQTVATC----P----APQERWKALNEIDA----GICE-EMTYEQIAEKYPDDFSARDCAKFTYR 260 (366)
Q Consensus 194 ~~~~~~i~tSpl~Ra~qTA~~i----~----~~~~~~~~L~E~~~----G~~e-g~~~~ei~~~~p~~~~~~~~~~~~~~ 260 (366)
++.+++||+||..||+|||..+ + ..+.++|.|-|... |.++ -.+..|+....+........- +.+.
T Consensus 89 ~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~P~-~~~~ 167 (272)
T KOG3734|consen 89 GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDPV-YKET 167 (272)
T ss_pred CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccchh-hhhc
Confidence 9999999999999999999987 2 35677788877632 1112 123445544333221111110 0123
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcC---CeEEEEechHHHHHHHHHHhcCCCCCCCCcccCCceEEEEEE
Q psy9912 261 YPRGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTP 326 (366)
Q Consensus 261 ~p~gES~~d~~~R~~~~i~~l~~~---~~vlIVsH~~~ir~l~~~~~~~~~~~~~~l~~~~~~v~~l~~ 326 (366)
+-++||++++..|+..++.+|... +++||||||..+....+.|.|.+.... ...+.+.+.++
T Consensus 168 ~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~~~~~~----~D~~~~~~~~~ 232 (272)
T KOG3734|consen 168 PRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGLPVRYR----VDFCQIVEPTP 232 (272)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCCCceee----cchhheeeccc
Confidence 457899999999999999999875 679999999999999999988665432 22445555544
No 37
>PRK07708 hypothetical protein; Validated
Probab=98.45 E-value=8.7e-08 Score=86.74 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=75.4
Q ss_pred eCCCchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHh-HHhhceeC
Q psy9912 29 DATNSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMH-YEERYEAL 106 (366)
Q Consensus 29 daTN~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~-~~~~y~p~ 106 (366)
.+|||.+||.+++..+ .+.+.|++-.-|.+..||+.|++|..++|+.++|++..+..+ + .++.+++.. +...|+||
T Consensus 115 ~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~-i-~~l~~~~~l~~~~~~VpR 192 (219)
T PRK07708 115 IYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQVVLNQLAGEWPCYDEHLNHWLDR-I-EQKLKQLKLTPVYEPISR 192 (219)
T ss_pred cccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccHHHHHHhCCCceeCChhHHHHHHH-H-HHHHhhCCceEEEEECCc
Confidence 5899999999999976 577888766668899999999999999999999998776433 2 455566542 56679999
Q ss_pred chhhHHhhhhHhhhc
Q psy9912 107 NEESEAALSFMRIYN 121 (366)
Q Consensus 107 ~~~~~~~~~~ik~id 121 (366)
+.|..+|.++..+++
T Consensus 193 ~~N~~AD~LAk~Al~ 207 (219)
T PRK07708 193 KQNKEADQLATQALE 207 (219)
T ss_pred hhhhHHHHHHHHHHh
Confidence 999999999999987
No 38
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=98.06 E-value=9.9e-06 Score=68.82 Aligned_cols=96 Identities=15% Similarity=0.033 Sum_probs=74.5
Q ss_pred EEEEeCCCchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCC----------HHHHHHHHH
Q psy9912 25 VAVFDATNSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMN----------REAALQDFL 93 (366)
Q Consensus 25 vai~daTN~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~----------~e~a~~~~~ 93 (366)
+++..+|||.+|++++|..+ .+++.+. ..|+++.||+.|++++. .|..+.++..-.. .=+.+..+.
T Consensus 36 ~~~~~tTNNraEl~A~i~AL~~l~~~~~--~~v~l~tDS~yv~~~i~-~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~ 112 (154)
T COG0328 36 GGEGRTTNNRAELRALIEALEALKELGA--CEVTLYTDSKYVVEGIT-RWIVKWKKNGWKTADKKPVKNKDLWEELDELL 112 (154)
T ss_pred eeeecccChHHHHHHHHHHHHHHHhcCC--ceEEEEecHHHHHHHHH-HHHhhccccCccccccCccccHHHHHHHHHHH
Confidence 45568999999999999987 3555454 67999999999999999 7877777654442 122446777
Q ss_pred HHHHhHHhhcee----CchhhHHhhhhHhhhccC
Q psy9912 94 QRIMHYEERYEA----LNEESEAALSFMRIYNTG 123 (366)
Q Consensus 94 ~r~~~~~~~y~p----~~~~~~~~~~~ik~id~g 123 (366)
+++..+...|+| ...|+.+|.+..+++...
T Consensus 113 ~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 113 KRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred hhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 888788999999 778888999999887643
No 39
>PRK13907 rnhA ribonuclease H; Provisional
Probab=97.91 E-value=1e-05 Score=67.09 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=69.7
Q ss_pred EeCCCchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHhHHhhceeC
Q psy9912 28 FDATNSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEAL 106 (366)
Q Consensus 28 ~daTN~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~~~~~y~p~ 106 (366)
..+||+.+|+.+++..+ .+.+.++.. |++..||+.|+++..++|+ +++.++++-.+. .++.+++..+...|+|+
T Consensus 37 ~~~tn~~AE~~All~aL~~a~~~g~~~--v~i~sDS~~vi~~~~~~~~-~~~~~~~l~~~~--~~l~~~f~~~~~~~v~r 111 (128)
T PRK13907 37 GTMSNHEAEYHALLAALKYCTEHNYNI--VSFRTDSQLVERAVEKEYA-KNKMFAPLLEEA--LQYIKSFDLFFIKWIPS 111 (128)
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCE--EEEEechHHHHHHHhHHHh-cChhHHHHHHHH--HHHHhcCCceEEEEcCc
Confidence 35899999999999876 466777644 6777899999999999886 566666655442 35667777777799999
Q ss_pred chhhHHhhhhHhhhc
Q psy9912 107 NEESEAALSFMRIYN 121 (366)
Q Consensus 107 ~~~~~~~~~~ik~id 121 (366)
+.|..+|....++++
T Consensus 112 ~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 112 SQNKVADELARKAIL 126 (128)
T ss_pred hhchhHHHHHHHHHh
Confidence 999989988888765
No 40
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.60 E-value=8.3e-05 Score=68.34 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=46.4
Q ss_pred eeEEEeeccccccccCCcccCCCCCCHhhHHHHHHHHHHHhcC----------CCCCcEEEecchHHHHHHHHhc
Q psy9912 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQ----------DIPGLRIWTSWLKRTIQTVATC 215 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~~~~gD~~LT~~G~~qA~~l~~~l~~~----------~~~~~~i~tSpl~Ra~qTA~~i 215 (366)
.-.++.|||+... ..||+.|++|+..+|+++++. ......+++|+..||+|||+.+
T Consensus 4 ~v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 4 QVQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 3567899999864 579999999999999999752 1223479999999999999987
No 41
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=96.62 E-value=0.0038 Score=59.70 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCCCCHhhHHHHHHHHHHHhcC-------C--CCCcEEEecchHHHHHHHHhc
Q psy9912 172 DSSLSERGQLYSQALGKFIAQQ-------D--IPGLRIWTSWLKRTIQTVATC 215 (366)
Q Consensus 172 D~~LT~~G~~qA~~l~~~l~~~-------~--~~~~~i~tSpl~Ra~qTA~~i 215 (366)
...||+.|.+|...+|+++++. . .+...|+||...||++||+.+
T Consensus 60 ~g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 60 WGQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp TTSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 3459999999999999998753 1 133579999999999999986
No 42
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.57 E-value=0.024 Score=47.10 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=53.8
Q ss_pred HHHHHHHH-HHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHH
Q psy9912 9 IDALTDVI-AWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREA 87 (366)
Q Consensus 9 ~~~~~d~~-~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~ 87 (366)
...+.+++ ..+..| .=.|+|.||...+.|..+.+. ++..|+++..|.+-|+.+.+.+++..+. .+.++..-..++
T Consensus 56 ~~~~~~~~~~~l~~g-~~~vvd~~~~~~~~r~~~~~~-~~~~~~~~~~v~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~ 131 (143)
T PF13671_consen 56 YQILNAAIRKALRNG-NSVVVDNTNLSREERARLREL-ARKHGYPVRVVYLDAPEETLRERLAQRN--REGDKRFEVPEE 131 (143)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESS--SHHHHHHHHHH-HHHCTEEEEEEEECHHHHHHHHHHHTTH--CCCTTS----HH
T ss_pred HHHHHHHHHHHHHcC-CCceeccCcCCHHHHHHHHHH-HHHcCCeEEEEEEECCHHHHHHHHHhcC--CcccccccCcHH
Confidence 33443444 566665 446689999999999999998 9999999999999998888777776432 232333334444
Q ss_pred HHHHHHHHH
Q psy9912 88 ALQDFLQRI 96 (366)
Q Consensus 88 a~~~~~~r~ 96 (366)
++.++.+++
T Consensus 132 ~~~~~~~~~ 140 (143)
T PF13671_consen 132 VFDRMLARF 140 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 656666554
No 43
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=96.52 E-value=0.00045 Score=52.44 Aligned_cols=84 Identities=7% Similarity=0.069 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHhHHhhceeCchhh
Q psy9912 32 NSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEALNEES 110 (366)
Q Consensus 32 N~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~~~~~y~p~~~~~ 110 (366)
|+.+|..+++..+ .+.++|++ -|++..|+..++++..+.++..+ ++..+-. .+..+.+++..+...|+||+.|.
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~--~i~v~sDs~~vv~~i~~~~~~~~-~~~~~~~--~i~~~~~~~~~~~~~~i~r~~N~ 75 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIR--KIIVESDSQLVVDAINGRSSSRS-ELRPLIQ--DIRSLLDRFWNVSVSHIPREQNK 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-S--CEEEEES-HHHHHHHTTSS---S-CCHHHHH--HHHHHHCCCSCEEEEE--GGGSH
T ss_pred CcHHHHHHHHHHHHHHHHCCCC--EEEEEecCccccccccccccccc-cccccch--hhhhhhccccceEEEEEChHHhH
Confidence 4578999999876 47777775 47888999999999877655554 4444333 34578888889999999999999
Q ss_pred HHhhhhHhhh
Q psy9912 111 EAALSFMRIY 120 (366)
Q Consensus 111 ~~~~~~ik~i 120 (366)
.+|.....+.
T Consensus 76 ~A~~LA~~a~ 85 (87)
T PF13456_consen 76 VADALAKFAL 85 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887766543
No 44
>COG4639 Predicted kinase [General function prediction only]
Probab=96.50 E-value=0.0078 Score=51.15 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHHHHHHHhhc---CCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhH
Q psy9912 11 ALTDVIAWLET---GGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNI 70 (366)
Q Consensus 11 ~~~d~~~~l~~---~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni 70 (366)
+.+-+...++. -|..+||||||...|-|+-+.++ +.++|++..+|.+-.-=++..+.|.
T Consensus 54 ~~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~L-a~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 54 VWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDL-AKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHH-HHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 44444455543 28999999999999999999999 9999998877554333345555553
No 45
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.45 E-value=0.083 Score=54.11 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHH
Q psy9912 10 DALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAAL 89 (366)
Q Consensus 10 ~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~ 89 (366)
.|++-+...|..|..| |+|+||.+++.|+...++ +++.|+.+.++.+-++.+.+.++|..+ ....+.-..+. ++++
T Consensus 408 ~~~~~a~~~L~~G~sV-VIDaTn~~~~~R~~~i~l-Ak~~gv~v~~i~~~~p~e~~~~Rn~~R-~~~~~s~~~vp-~~v~ 483 (526)
T TIGR01663 408 NCLTACERALDQGKRC-AIDNTNPDAASRAKFLQC-ARAAGIPCRCFLFNAPLAQAKHNIAFR-ELSDSAHIKIK-DMVF 483 (526)
T ss_pred HHHHHHHHHHhCCCcE-EEECCCCCHHHHHHHHHH-HHHcCCeEEEEEeCCCHHHHHHHHHhh-ccCCcccCCCC-HHHH
Confidence 3566677788776444 689999999999999999 999999888887777766665555433 32222222333 4465
Q ss_pred HHHHHHH
Q psy9912 90 QDFLQRI 96 (366)
Q Consensus 90 ~~~~~r~ 96 (366)
..|.+++
T Consensus 484 ~~~~k~f 490 (526)
T TIGR01663 484 NGMKKKF 490 (526)
T ss_pred HHHHhhC
Confidence 6666554
No 46
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.05 E-value=0.32 Score=45.97 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHHH-HHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHH
Q psy9912 11 ALTDV-IAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAAL 89 (366)
Q Consensus 11 ~~~d~-~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~ 89 (366)
.+.++ ...+.. |...|+|+||.+.++|..+.++ ++++++.+.+|.+-|+.+.+.+++..+ .. ... +++.+
T Consensus 63 ~~~~~~~~~l~~-g~~vIid~~~~~~~~~~~~~~l-a~~~~~~~~~v~l~~~~e~~~~R~~~R---~~---~~~-~~~~i 133 (300)
T PHA02530 63 AQEAAALAALKS-GKSVIISDTNLNPERRRKWKEL-AKELGAEFEEKVFDVPVEELVKRNRKR---GE---RAV-PEDVL 133 (300)
T ss_pred HHHHHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHH-HHHcCCeEEEEEeCCCHHHHHHHHHcc---Cc---CCC-CHHHH
Confidence 33343 334444 5667899999999999988888 888888777777777666666666543 11 123 34466
Q ss_pred HHHHHHHHhHHhhceeC
Q psy9912 90 QDFLQRIMHYEERYEAL 106 (366)
Q Consensus 90 ~~~~~r~~~~~~~y~p~ 106 (366)
+...+|++.|...-.|+
T Consensus 134 ~~~~~~~~~~~~~~~p~ 150 (300)
T PHA02530 134 RSMFKQMKEYRGLVWPV 150 (300)
T ss_pred HHHHHHHHHhcCCCCce
Confidence 77788888887665565
No 47
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=94.87 E-value=0.014 Score=46.40 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=57.9
Q ss_pred eCCCchHHHHHHHHHH-HHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHhHHhhceeC-
Q psy9912 29 DATNSTIDRRKMIHEM-VVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEAL- 106 (366)
Q Consensus 29 daTN~t~e~r~~i~~~-~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~~~~~y~p~- 106 (366)
..||+.+|..+++..+ .+...+. .-|++.+|++.++....+......+++..+..+ +.++.++....+..|+|+
T Consensus 38 ~~s~~~aEl~al~~al~~~~~~~~--~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~i~~v~~h 113 (130)
T cd06222 38 NTTNNRAELLALIEALELALELGG--KKVNIYTDSQYVINALTGWYEGKPVKNVDLWQR--LLALLKRFHKVRFEWVPGH 113 (130)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCC--ceEEEEECHHHHHHHhhccccCCChhhHHHHHH--HHHHHhCCCeEEEEEcCCC
Confidence 5688999999999875 2434444 558899999999998876544334443333322 234444556677889999
Q ss_pred ---chhhHHhhhhHh
Q psy9912 107 ---NEESEAALSFMR 118 (366)
Q Consensus 107 ---~~~~~~~~~~ik 118 (366)
..|..+|....+
T Consensus 114 ~~~~~n~~ad~la~~ 128 (130)
T cd06222 114 SGIEGNERADALAKE 128 (130)
T ss_pred CCCcchHHHHHHHHh
Confidence 778777766544
No 48
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=94.28 E-value=0.11 Score=51.79 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=45.3
Q ss_pred eeEEEeeccccccccCC-----c--------cc-CCCCCCHhhHHHHHHHHHHHhcC----C---------CCCcEEEec
Q psy9912 151 RTIYLTRHGESEHNLQG-----I--------IG-GDSSLSERGQLYSQALGKFIAQQ----D---------IPGLRIWTS 203 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~~-----~--------~~-gD~~LT~~G~~qA~~l~~~l~~~----~---------~~~~~i~tS 203 (366)
+-++|.|||-...-... . +. ....||.+|..+-..+|+++++. + .....+|++
T Consensus 33 ~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~ 112 (413)
T PRK10173 33 QVLMMSRHNLRAPLANNGSVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYAYAN 112 (413)
T ss_pred EEEEEeecccCCCCCCcchhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeC
Confidence 56889999975432211 1 11 14579999999988888866532 1 112478999
Q ss_pred chHHHHHHHHhc
Q psy9912 204 WLKRTIQTVATC 215 (366)
Q Consensus 204 pl~Ra~qTA~~i 215 (366)
+..||++||+.+
T Consensus 113 ~~~RT~~Sa~af 124 (413)
T PRK10173 113 SLQRTVATAQFF 124 (413)
T ss_pred CchHHHHHHHHH
Confidence 999999999876
No 49
>KOG3720|consensus
Probab=93.59 E-value=0.12 Score=51.44 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=45.8
Q ss_pred eEEEeecccccc-cc---CCc------c-cCCCCCCHhhHHHHHHHHHHHhc---CCC---------CCcEEEecchHHH
Q psy9912 152 TIYLTRHGESEH-NL---QGI------I-GGDSSLSERGQLYSQALGKFIAQ---QDI---------PGLRIWTSWLKRT 208 (366)
Q Consensus 152 ~I~LvRHGes~~-n~---~~~------~-~gD~~LT~~G~~qA~~l~~~l~~---~~~---------~~~~i~tSpl~Ra 208 (366)
.-.+-|||.... +. ... + +|--.||+.|.+|+..||++|++ .-. +-..|.||+..||
T Consensus 37 v~~i~RHGdRaP~~~~yp~dp~~~~~~~~~G~GqLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~nRt 116 (411)
T KOG3720|consen 37 VQVIFRHGDRAPVDTPYPLDPFKEEDFWPRGWGQLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDVNRT 116 (411)
T ss_pred EEEEeecCCCCcccCCCCCCcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHhhccccCCcccCcceEEEecCCccHH
Confidence 445679997653 11 011 1 23558999999999999999988 311 1236899999999
Q ss_pred HHHHHhc
Q psy9912 209 IQTVATC 215 (366)
Q Consensus 209 ~qTA~~i 215 (366)
+.||+..
T Consensus 117 l~SAqs~ 123 (411)
T KOG3720|consen 117 LMSAQSV 123 (411)
T ss_pred HHHHHHH
Confidence 9999986
No 50
>PRK06548 ribonuclease H; Provisional
Probab=92.50 E-value=0.24 Score=42.70 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=56.8
Q ss_pred EeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH---HHhcCCCCC---CCC-CHH--HHHHHHHHHHHh
Q psy9912 28 FDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM---EVKVNSPDY---QDM-NRE--AALQDFLQRIMH 98 (366)
Q Consensus 28 ~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~---~~k~~~pdy---~~~-~~e--~a~~~~~~r~~~ 98 (366)
.++|||.+|.+++|..+.....+. ..|+++.||+-+|+.... .||.+...= ++. ..+ +.+..++++ ..
T Consensus 38 ~~~TNnraEl~Aii~aL~~~~~~~--~~v~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~ 114 (161)
T PRK06548 38 DIATNNIAELTAVRELLIATRHTD--RPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RN 114 (161)
T ss_pred CCCCHHHHHHHHHHHHHHhhhcCC--ceEEEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc-Cc
Confidence 468999999999998651222222 247889999999998874 455443211 111 111 122222332 13
Q ss_pred HHhhceeCc----hhhHHhhhhHhhhccCCceEeccccchhh
Q psy9912 99 YEERYEALN----EESEAALSFMRIYNTGEKVLVHKHEGHIQ 136 (366)
Q Consensus 99 ~~~~y~p~~----~~~~~~~~~ik~id~g~~~~~~~~~g~l~ 136 (366)
++..|++-- .|+.+|.++.++.+. .....||+|
T Consensus 115 v~~~wVkgHsg~~gNe~aD~LA~~aa~~-----~~~~~~~~~ 151 (161)
T PRK06548 115 IRMSWVNAHTGHPLNEAADSLARQAANN-----FSTRSAHIP 151 (161)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHH-----hcccCCCCC
Confidence 566676642 366677777765432 124556665
No 51
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=92.31 E-value=0.37 Score=48.14 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=44.7
Q ss_pred eeEEEeeccccccccC---------Ccc----cCCCCCCHhhHHHHHHHHHHHhcCC----C---------CCcEEEecc
Q psy9912 151 RTIYLTRHGESEHNLQ---------GII----GGDSSLSERGQLYSQALGKFIAQQD----I---------PGLRIWTSW 204 (366)
Q Consensus 151 ~~I~LvRHGes~~n~~---------~~~----~gD~~LT~~G~~qA~~l~~~l~~~~----~---------~~~~i~tSp 204 (366)
+-+.|.|||-...... ..+ .|.-.||++|..|-..+|+++++.- + ....|++++
T Consensus 36 ~Vvil~RHG~RaP~~~~~~~~~~t~~~w~~W~~~~GqLT~~G~~~~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~v~a~~ 115 (436)
T PRK10172 36 SVVIVSRHGVRAPTKATQLMQDVTPDAWPQWPVKLGWLTPRGGELVTLLGHYQRQRLVADGLLAAKGCPQPGQVAAIADV 115 (436)
T ss_pred EEEEEeeCCCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEeCC
Confidence 3466889997543210 111 1245799999999999999876431 1 123788889
Q ss_pred hHHHHHHHHhc
Q psy9912 205 LKRTIQTVATC 215 (366)
Q Consensus 205 l~Ra~qTA~~i 215 (366)
..||+.||+.+
T Consensus 116 ~~RTi~SAqaf 126 (436)
T PRK10172 116 DQRTRKTGEAF 126 (436)
T ss_pred chHHHHHHHHH
Confidence 99999999876
No 52
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=90.21 E-value=0.74 Score=39.01 Aligned_cols=91 Identities=12% Similarity=-0.042 Sum_probs=53.4
Q ss_pred EeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH---HHhcCCCC---CCCCCHH---HHHHHHHHHHHh
Q psy9912 28 FDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM---EVKVNSPD---YQDMNRE---AALQDFLQRIMH 98 (366)
Q Consensus 28 ~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~---~~k~~~pd---y~~~~~e---~a~~~~~~r~~~ 98 (366)
.+.||+.+|.++++..+ ...... .-|.++.||+.+++.... .||.+..- =++.... +.+..++++ ..
T Consensus 39 ~~~TN~~aEL~Ai~~AL-~~~~~~--~~v~I~tDS~yvi~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~-~~ 114 (150)
T PRK00203 39 ALTTNNRMELMAAIEAL-EALKEP--CEVTLYTDSQYVRQGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKR-HQ 114 (150)
T ss_pred CCCcHHHHHHHHHHHHH-HHcCCC--CeEEEEECHHHHHHHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhcc-Cc
Confidence 36899999999998876 222112 237899999988876553 34443211 1112111 112233333 34
Q ss_pred HHhhcee----CchhhHHhhhhHhhhcc
Q psy9912 99 YEERYEA----LNEESEAALSFMRIYNT 122 (366)
Q Consensus 99 ~~~~y~p----~~~~~~~~~~~ik~id~ 122 (366)
....|+| ..-|+.+|.+..+.++.
T Consensus 115 v~~~wV~~H~~~~~N~~AD~lA~~a~~~ 142 (150)
T PRK00203 115 IKWHWVKGHAGHPENERCDELARAGAEE 142 (150)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888 55677788888777653
No 53
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=89.38 E-value=1.8 Score=36.55 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhH
Q psy9912 14 DVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNI 70 (366)
Q Consensus 14 d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni 70 (366)
.....|.+.|.+.|.|+|+...+.|..+.++ ++ +..+.+|.+.|+-+...++++
T Consensus 62 ~~a~~l~~~G~~VIid~~~~~~~~R~~~~~l-~~--~~~~~~i~l~~~~e~~~~R~~ 115 (149)
T cd02027 62 EVAKLLADAGLIVIAAFISPYREDREAARKI-IG--GGDFLEVFVDTPLEVCEQRDP 115 (149)
T ss_pred HHHHHHHhCCCEEEEccCCCCHHHHHHHHHh-cC--CCCEEEEEEeCCHHHHHHhCc
Confidence 3444555568999999999999999888877 65 566667777777666555543
No 54
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=88.69 E-value=3.5 Score=37.85 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=40.8
Q ss_pred HHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH
Q psy9912 16 IAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM 71 (366)
Q Consensus 16 ~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~ 71 (366)
...+.. |.+.|.|++|..+++|..+... ++..+.....|-+-|+.+.+++.|..
T Consensus 62 ~~~l~~-~~~VI~D~~~~~~~~r~~l~~~-ak~~~~~~~~I~l~~p~e~~~~Rn~~ 115 (249)
T TIGR03574 62 KTALKN-KYSVIVDDTNYYNSMRRDLINI-AKEYNKNYIIIYLKAPLDTLLRRNIE 115 (249)
T ss_pred HHHHhC-CCeEEEeccchHHHHHHHHHHH-HHhCCCCEEEEEecCCHHHHHHHHHh
Confidence 334433 5778899999999998888887 77777766667777777788887764
No 55
>PRK08719 ribonuclease H; Reviewed
Probab=87.19 E-value=0.66 Score=39.35 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=29.8
Q ss_pred eCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHh---HHHHhc
Q psy9912 29 DATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQN---IMEVKV 75 (366)
Q Consensus 29 daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~n---i~~~k~ 75 (366)
.+||+.+|..+++..+ -..... ..++.||+.|++.. +..|+.
T Consensus 47 ~~Tnn~aEl~A~~~aL-~~~~~~----~~i~tDS~yvi~~i~~~~~~W~~ 91 (147)
T PRK08719 47 YTDNAELELLALIEAL-EYARDG----DVIYSDSDYCVRGFNEWLDTWKQ 91 (147)
T ss_pred CccHHHHHHHHHHHHH-HHcCCC----CEEEechHHHHHHHHHHHHHHHh
Confidence 4799999999998876 222111 25889999999886 444444
No 56
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.64 E-value=3.4 Score=34.44 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHH
Q psy9912 14 DVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIME 72 (366)
Q Consensus 14 d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~ 72 (366)
.+...+...|...|+|+|+...++|..+.++ + .+..+.+|.+.|+.+.+.+++..+
T Consensus 63 ~~~~~l~~~~~~vVid~~~~~~~~r~~~~~~-~--~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 63 ALLAKLASAGEGVVVACSALKRIYRDILRGG-A--ANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred HHHHHHHhCCCCEEEEeccccHHHHHHHHhc-C--CCCCEEEEEEECCHHHHHHHHHhc
Confidence 3344443235556789999999999888877 6 566777888888877777777654
No 57
>PRK06762 hypothetical protein; Provisional
Probab=82.09 E-value=4.6 Score=34.33 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHH
Q psy9912 10 DALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIME 72 (366)
Q Consensus 10 ~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~ 72 (366)
..+.++..+..+.|.+.|.|+++....+|..+..+ .+..+.++.+|-+-++-+..++++..+
T Consensus 55 ~~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l-~~~~~~~~~~v~Ldap~e~~~~R~~~R 116 (166)
T PRK06762 55 DLIEQLVRYGLGHCEFVILEGILNSDRYGPMLKEL-IHLFRGNAYTYYFDLSFEETLRRHSTR 116 (166)
T ss_pred HHHHHHHHHHHhCCCEEEEchhhccHhHHHHHHHH-HHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence 34555666654557888899999999999888777 777666655666666666666666543
No 58
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=82.01 E-value=14 Score=34.62 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=46.7
Q ss_pred HHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHH
Q psy9912 14 DVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFL 93 (366)
Q Consensus 14 d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~ 93 (366)
.+...|.. ..|-|.|++|-.+-+|--+..+ +++.+.....|.+-|+-+..++.|..+ ..++ ...++.+.++.
T Consensus 63 ~v~r~ls~-~~iVI~Dd~nYiKg~RYelycl-Ar~~~~~~c~i~~~~~~e~~~~~N~~R---~~~~---~~~~e~i~~m~ 134 (270)
T PF08433_consen 63 AVERALSK-DTIVILDDNNYIKGMRYELYCL-ARAYGTTFCVIYCDCPLETCLQRNSKR---PEPE---RYPEETIDDMI 134 (270)
T ss_dssp HHHHHHTT--SEEEE-S---SHHHHHHHHHH-HHHTT-EEEEEEEE--HHHHHHHHHHT---T-S-----S-HHHHHHHH
T ss_pred HHHHhhcc-CeEEEEeCCchHHHHHHHHHHH-HHHcCCCEEEEEECCCHHHHHHhhhcc---CCCC---CCCHHHHHHHH
Confidence 34444544 5899999999999999999998 999888777788888888888888643 1111 23455777887
Q ss_pred HHHH
Q psy9912 94 QRIM 97 (366)
Q Consensus 94 ~r~~ 97 (366)
.||+
T Consensus 135 ~RfE 138 (270)
T PF08433_consen 135 QRFE 138 (270)
T ss_dssp HH--
T ss_pred HHhc
Confidence 7765
No 59
>KOG1057|consensus
Probab=80.39 E-value=1.9 Score=45.49 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=36.7
Q ss_pred CCCCCHhhHHHHHHHHHHHhcCCC---------------CCcEEEecchHHHHHHHHhc
Q psy9912 172 DSSLSERGQLYSQALGKFIAQQDI---------------PGLRIWTSWLKRTIQTVATC 215 (366)
Q Consensus 172 D~~LT~~G~~qA~~l~~~l~~~~~---------------~~~~i~tSpl~Ra~qTA~~i 215 (366)
.-.||+.|+.||+.||+.++..-. ....||+|.-.|-+-||+.+
T Consensus 509 GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaF 567 (1018)
T KOG1057|consen 509 GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAF 567 (1018)
T ss_pred CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHH
Confidence 357999999999999999975311 23479999999999999997
No 60
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=79.36 E-value=8.5 Score=33.17 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCeEEEEeCCCc-hHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH
Q psy9912 12 LTDVIAWLETGGEVAVFDATNS-TIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM 71 (366)
Q Consensus 12 ~~d~~~~l~~~g~vai~daTN~-t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~ 71 (366)
+.+...-+.+.|...|.|+|+. ..+.|..+..+ .+..+.+|.+.|+.+.+.+++..
T Consensus 74 ~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~----~~~~~~~v~l~~~~~~l~~R~~~ 130 (175)
T cd00227 74 WYEAVAAMARAGANVIADDVFLGRAALQDCWRSF----VGLDVLWVGVRCPGEVAEGRETA 130 (175)
T ss_pred HHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHh----cCCCEEEEEEECCHHHHHHHHHh
Confidence 3333333333467778999998 56666665544 24567899999999877777764
No 61
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=78.93 E-value=10 Score=32.90 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHh
Q psy9912 13 TDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQN 69 (366)
Q Consensus 13 ~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~n 69 (366)
.++...+...|.+.|.|+|+...++|..+... +... ...+|.+-|+.+.+++++
T Consensus 80 ~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~-~~~~--~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 80 GEVAKLFVRNGIIVITSFISPYRADRQMVREL-IEKG--EFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHHh-CcCC--CeEEEEEeCCHHHHHHhC
Confidence 33444444558999999999999999888887 6543 335566667777666654
No 62
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=73.97 E-value=18 Score=30.57 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH
Q psy9912 7 CAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM 71 (366)
Q Consensus 7 ~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~ 71 (366)
+.....+.+...+..|+.+ |.|+|+...++|..+. ..+..+.+|-+.|+.+.+.+++..
T Consensus 55 ~~~~~~~~~~~~l~~~~~~-Vi~~t~~~~~~r~~~~-----~~~~~~~~i~l~~~~e~~~~R~~~ 113 (163)
T TIGR01313 55 WLQNLNDASTAAAAKNKVG-IITCSALKRHYRDILR-----EAEPNLHFIYLSGDKDVILERMKA 113 (163)
T ss_pred HHHHHHHHHHHHHhcCCCE-EEEecccHHHHHHHHH-----hcCCCEEEEEEeCCHHHHHHHHHh
Confidence 3344455666677666444 9999999888887654 335555667667776666665543
No 63
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=71.94 E-value=11 Score=36.61 Aligned_cols=49 Identities=14% Similarity=0.039 Sum_probs=41.1
Q ss_pred CeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHH
Q psy9912 23 GEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIME 72 (366)
Q Consensus 23 g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~ 72 (366)
+.+.|.|+||..+.+|..+..+ ++..+.....|.+-|+.+...++|..+
T Consensus 127 pllvilDd~fy~ks~Ryel~~L-Ar~~~~~~~~V~ld~ple~~l~RN~~R 175 (340)
T TIGR03575 127 PLCLVLDDNFYYQSMRYEVYQL-ARKYSLGFCQLFLDCPVESCLLRNKQR 175 (340)
T ss_pred CCCceecCCCCCHHHHHHHHHH-HHHhCCCEEEEEEeCCHHHHHHHHhcC
Confidence 5688999999999999999998 888887777777777887888887653
No 64
>KOG1382|consensus
Probab=68.78 E-value=6.6 Score=39.24 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCCCCHhhHHHHHHHHHHHhcC-----CCCCcEEEecchHHHHHHHHhc
Q psy9912 172 DSSLSERGQLYSQALGKFIAQQ-----DIPGLRIWTSWLKRTIQTVATC 215 (366)
Q Consensus 172 D~~LT~~G~~qA~~l~~~l~~~-----~~~~~~i~tSpl~Ra~qTA~~i 215 (366)
+..|...|++-|..+++.+-++ +.....|+|+-..||.+||+.+
T Consensus 130 ~~~l~~~g~~~a~R~~r~f~~~y~~~~n~~~y~i~tt~~~R~~dSA~~F 178 (467)
T KOG1382|consen 130 VDQLEDEGRMLAKRLARRFPALYYELENPTVYNINTTASQRVVDSAQAF 178 (467)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcCCceEEeeccchHHHHHHHHHH
Confidence 4567788999998888766432 3344579999999999999987
No 65
>PRK14531 adenylate kinase; Provisional
Probab=58.27 E-value=45 Score=28.87 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=47.4
Q ss_pred eEEEEeCCCchHHHHHHHHHHHHhhcCCeE-EEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHHhHHhh
Q psy9912 24 EVAVFDATNSTIDRRKMIHEMVVDKMGYKL-FFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEER 102 (366)
Q Consensus 24 ~vai~daTN~t~e~r~~i~~~~~~~~~~~~-~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~~~~~~ 102 (366)
.--|+|+..-+.+-+..+.+. +...+..+ .+|.+-|+.+.+++...++ ..+| +.+ ..+.+|++.|+..
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~-~~~~~~~~~~vi~l~~~~~~l~~Rl~~R---~r~d----D~~---e~i~~Rl~~y~~~ 148 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPL-LEELKQPIEAVVLLELDDAVLIERLLAR---GRAD----DNE---AVIRNRLEVYREK 148 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHH-HHHcCCCCCeEEEEECCHHHHHHHhhcC---CCCC----CCH---HHHHHHHHHHHHH
Confidence 335789999998888777776 66555433 3577777776666655432 1111 222 2577899999887
Q ss_pred ceeCc
Q psy9912 103 YEALN 107 (366)
Q Consensus 103 y~p~~ 107 (366)
..|+-
T Consensus 149 ~~pv~ 153 (183)
T PRK14531 149 TAPLI 153 (183)
T ss_pred HHHHH
Confidence 77764
No 66
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=57.79 E-value=9.2 Score=30.87 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=47.7
Q ss_pred eCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhc----CCCCCCCCCHHHHHHHHHHHHHhHHhhce
Q psy9912 29 DATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKV----NSPDYQDMNREAALQDFLQRIMHYEERYE 104 (366)
Q Consensus 29 daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~----~~pdy~~~~~e~a~~~~~~r~~~~~~~y~ 104 (366)
..||+.+|..+++..+ - .... -.|.+++||+.+++........ ..+..+.+-.+ . .+++.+-..++..|+
T Consensus 37 ~~s~~~aEl~Ai~~AL-~-~~~~--~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~-i-~~~~~~~~~v~~~~V 110 (132)
T PF00075_consen 37 GQSNNRAELQAIIEAL-K-ALEH--RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNE-I-WELLSRGIKVRFRWV 110 (132)
T ss_dssp SECHHHHHHHHHHHHH-H-THST--SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHH-H-HHHHHHSSEEEEEES
T ss_pred ccchhhhheehHHHHH-H-Hhhc--ccccccccHHHHHHHHHHhccccccccccccccchhh-e-eeccccceEEeeeec
Confidence 7899999999999877 3 2112 3366899999999855542111 11222233332 2 233344445677888
Q ss_pred eCc-----hhhHHhhhhHh
Q psy9912 105 ALN-----EESEAALSFMR 118 (366)
Q Consensus 105 p~~-----~~~~~~~~~ik 118 (366)
|-. .|+.+|.++-+
T Consensus 111 ~~H~~~~~~N~~aD~lAk~ 129 (132)
T PF00075_consen 111 PGHSGVPQGNERADRLAKE 129 (132)
T ss_dssp SSSSSSHHHHHHHHHHHHH
T ss_pred cCcCCCchhHHHHHHHHHH
Confidence 875 34455555443
No 67
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=54.08 E-value=59 Score=22.71 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCe
Q psy9912 4 RTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYK 52 (366)
Q Consensus 4 r~~~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~ 52 (366)
|++......+++..|+.+++..-.|... ++..|.+|.++ +...|..
T Consensus 1 r~~~l~~~~~~~~~~~~~~~~~~~f~pm--~~~~R~~iH~~-a~~~gL~ 46 (63)
T PF01424_consen 1 RREELEKIEEKLIEFFLSSGESLEFPPM--NSFERKLIHEL-AEYYGLK 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSEEEEEC----SHHHHHHHHH-HHHCTEE
T ss_pred ChHHHHHHHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHH-HHHCCCE
Confidence 5566678888999999766656669984 55678999998 8776653
No 68
>PRK14532 adenylate kinase; Provisional
Probab=49.85 E-value=1.3e+02 Score=25.80 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=50.7
Q ss_pred CeEEEEeCCCchHHHHHHHHHHHHhhcCCeE-EEEEEEeCCHHHHHHhHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhHH
Q psy9912 23 GEVAVFDATNSTIDRRKMIHEMVVDKMGYKL-FFVESVCDDPSIIEQNIMEVK-VNSPDYQDMNREAALQDFLQRIMHYE 100 (366)
Q Consensus 23 g~vai~daTN~t~e~r~~i~~~~~~~~~~~~-~~iE~~~d~~~vi~~ni~~~k-~~~pdy~~~~~e~a~~~~~~r~~~~~ 100 (366)
|...|+|++=-+.+.+..+.++ +...|..+ ..|.+-|+++.++++..++.. ...|| +.+ ..|.+|+..|.
T Consensus 78 ~~g~vldg~pr~~~q~~~~~~~-l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~d----d~~---~~~~~Rl~~~~ 149 (188)
T PRK14532 78 AGGAIFDGFPRTVAQAEALDKM-LASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPD----DNP---EVFVTRLDAYN 149 (188)
T ss_pred cCcEEEeCCCCCHHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCC----CCH---HHHHHHHHHHH
Confidence 5567899998888888887776 66666544 567888888888877664422 12232 111 36788888887
Q ss_pred hhceeC
Q psy9912 101 ERYEAL 106 (366)
Q Consensus 101 ~~y~p~ 106 (366)
..-.|+
T Consensus 150 ~~~~~i 155 (188)
T PRK14532 150 AQTAPL 155 (188)
T ss_pred HHHHHH
Confidence 665554
No 69
>KOG3062|consensus
Probab=49.03 E-value=53 Score=30.12 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=46.8
Q ss_pred CeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Q psy9912 23 GEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIM 97 (366)
Q Consensus 23 g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~~~e~a~~~~~~r~~ 97 (366)
|++.|.|+-|-.+-+|=.+.=. ++..+..--.|.+-|.-++.-+-|. .-.+|+--++++| .++++..|++
T Consensus 74 ~~iVI~DslNyIKGfRYeLyC~-ak~~~tt~Cvv~t~vp~e~~r~~Ns---~~~~p~e~gy~~e-~le~L~~RyE 143 (281)
T KOG3062|consen 74 GDIVIVDSLNYIKGFRYELYCE-AKAARTTYCVVHTAVPQELCREWNS---EREDPGEDGYDDE-LLEALVQRYE 143 (281)
T ss_pred CcEEEEecccccccceeeeeee-hhccceeEEEEEecCCHHHHHHhcc---cCCCCCCCCCCHH-HHHHHHHHhh
Confidence 7999999999999998666533 4444433234555555555555552 2357877777777 6688888765
No 70
>PRK14527 adenylate kinase; Provisional
Probab=45.68 E-value=96 Score=26.89 Aligned_cols=77 Identities=18% Similarity=0.337 Sum_probs=49.6
Q ss_pred CeEEEEeCCCchHHHHHHHHHHHHhhcCCeEE-EEEEEeCCHHHHHHhHHHHhc-CCCCCCCCCHHHHHHHHHHHHHhHH
Q psy9912 23 GEVAVFDATNSTIDRRKMIHEMVVDKMGYKLF-FVESVCDDPSIIEQNIMEVKV-NSPDYQDMNREAALQDFLQRIMHYE 100 (366)
Q Consensus 23 g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~-~iE~~~d~~~vi~~ni~~~k~-~~pdy~~~~~e~a~~~~~~r~~~~~ 100 (366)
+.--|+|+.-.+.+-+..+... +...|..+. .|..-|+++.++++...+... ..+| +.+ +-+.+|++.|.
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~-~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d----d~~---~~~~~R~~~y~ 154 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRL-LEELGARLLAVVLLEVPDEELIRRIVERARQEGRSD----DNE---ETVRRRQQVYR 154 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHH-HHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCC----CCH---HHHHHHHHHHH
Confidence 4446799987666666666666 666665554 466778888887777654322 1122 112 36788999999
Q ss_pred hhceeCc
Q psy9912 101 ERYEALN 107 (366)
Q Consensus 101 ~~y~p~~ 107 (366)
....|+-
T Consensus 155 ~~~~~v~ 161 (191)
T PRK14527 155 EQTQPLV 161 (191)
T ss_pred HHhHHHH
Confidence 8777764
No 71
>PRK03846 adenylylsulfate kinase; Provisional
Probab=44.44 E-value=71 Score=28.00 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHH
Q psy9912 12 LTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQ 68 (366)
Q Consensus 12 ~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ 68 (366)
+.++...+...|.+.|-+..+..+++|..+.++ +...++ ++|.+.|+.+.+.++
T Consensus 85 l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~-l~~~~~--i~V~L~~~~e~~~~R 138 (198)
T PRK03846 85 VGEVAKLMVDAGLVVLTAFISPHRAERQMVRER-LGEGEF--IEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHH-cccCCE--EEEEEcCCHHHHHhc
Confidence 444455555557888888888889999999988 655443 446666666655554
No 72
>PRK04266 fibrillarin; Provisional
Probab=44.32 E-value=76 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcCCeEEE------EeCCCchHHHHHHHHHHHHhhcCCeEE
Q psy9912 9 IDALTDVIAWLETGGEVAV------FDATNSTIDRRKMIHEMVVDKMGYKLF 54 (366)
Q Consensus 9 ~~~~~d~~~~l~~~g~vai------~daTN~t~e~r~~i~~~~~~~~~~~~~ 54 (366)
..+++.+..+|+.||.++| .|......++.+...+. +++.|+++.
T Consensus 156 ~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~-l~~aGF~~i 206 (226)
T PRK04266 156 EIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRK-LEEGGFEIL 206 (226)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHH-HHHcCCeEE
Confidence 3468899999999999999 67766654444444466 677788654
No 73
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=40.58 E-value=1.4e+02 Score=25.47 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCH
Q psy9912 4 RTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDP 63 (366)
Q Consensus 4 r~~~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~ 63 (366)
|.+-+. -+.++-..|.+.|.+.|-.+....++.|.++.+. .... -|+||+++-+
T Consensus 56 R~e~~r-r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~-~~~~----~f~eVyv~~~ 109 (156)
T PF01583_consen 56 REENIR-RIAEVAKLLADQGIIVIVAFISPYREDREWAREL-IPNE----RFIEVYVDCP 109 (156)
T ss_dssp HHHHHH-HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHH-HHTT----EEEEEEEES-
T ss_pred HHHHHH-HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHh-CCcC----ceEEEEeCCC
Confidence 444443 4567777887779999999999999999999988 5432 5678877765
No 74
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=39.68 E-value=71 Score=30.50 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHcC--CeEEEEechHHHHHHHHHHhcCCCC
Q psy9912 268 EDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLLAYFLDKSAD 309 (366)
Q Consensus 268 ~d~~~R~~~~i~~l~~~--~~vlIVsH~~~ir~l~~~~~~~~~~ 309 (366)
..+..|+..++..+... ++++||+||.--..++.|+...+..
T Consensus 174 ~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~ 217 (310)
T PF12048_consen 174 ERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPP 217 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCc
Confidence 45667888888777665 5699999999999999999886654
No 75
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=34.97 E-value=2.1e+02 Score=24.97 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHH
Q psy9912 10 DALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEV 73 (366)
Q Consensus 10 ~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~ 73 (366)
...+.+++..-+.+.=-|+|.|....+.-..+++. +++.|+++..+=+-|+.+.-+..+..++
T Consensus 80 ~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~-~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 80 RLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIRE-AKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHH-HHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHH-HHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 34455555555555555589999887776667777 7888988665555555444444444433
No 76
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=34.56 E-value=1.3e+02 Score=31.69 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHH
Q psy9912 4 RTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQ 68 (366)
Q Consensus 4 r~~~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ 68 (366)
|........ ++...+...|.+.|.||++...++|.+..+. +...+ +.+|.+-++.+.+.++
T Consensus 514 r~~~~~~l~-~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l-~~~~~--~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 514 RVENIRRVA-EVARLMADAGLIVLVSFISPFREERELARAL-HGEGE--FVEVFVDTPLEVCEAR 574 (632)
T ss_pred HHHHHHHHH-HHHHHHHhCCCEEEEECCCCCHHHHHHHHHh-cccCC--eEEEEECCCHHHHHhh
Confidence 444443333 3334444447899999999999999887776 54432 2444444444544444
No 77
>PRK13785 adenylosuccinate synthetase; Provisional
Probab=33.75 E-value=1.8e+02 Score=29.41 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHcC--CeEEEEechHH
Q psy9912 266 SYEDLVARLEPVIMELERQ--GNVLVVSHQAV 295 (366)
Q Consensus 266 S~~d~~~R~~~~i~~l~~~--~~vlIVsH~~~ 295 (366)
+|.++-.-...++..+++. -+|-+||.|+-
T Consensus 412 ~~~~LP~~a~~yi~~iE~~~g~pv~~is~Gp~ 443 (454)
T PRK13785 412 GYDALPENARTYLEYVSDELDTPIYAVGVGPG 443 (454)
T ss_pred ChhhcCHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4888888888888888775 68999999864
No 78
>PRK09191 two-component response regulator; Provisional
Probab=33.53 E-value=1.4e+02 Score=26.78 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=43.2
Q ss_pred ccCCCCHHHHHhhCchHHHhhhhCCCccCCCCCCCHHHHHHHHHHHHHHHHcC--CeEEEEechHHHHHHHHHHhc
Q psy9912 232 ICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLLAYFLD 305 (366)
Q Consensus 232 ~~eg~~~~ei~~~~p~~~~~~~~~~~~~~~p~gES~~d~~~R~~~~i~~l~~~--~~vlIVsH~~~ir~l~~~~~~ 305 (366)
.++|+++.|+.+.. |-|...+..|+..++..+.+. ..++||......+..+...+.
T Consensus 101 ~~~~~s~~eIA~~l------------------~~s~~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~l~~~L~ 158 (261)
T PRK09191 101 ALEGFSVEEAAEIL------------------GVDPAEAEALLDDARAEIARQVATRVLIIEDEPIIAMDLEQLVE 158 (261)
T ss_pred HHhcCCHHHHHHHH------------------CCCHHHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHHh
Confidence 46789999988743 466778889998888888765 689999998887776666653
No 79
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=33.11 E-value=3.3e+02 Score=23.66 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=53.3
Q ss_pred HHHHHHHhhcC-CeEEEEeCCCchHHHHHHHHHHHHhhc---------CCeEEEEEEEeC--CHHHHHHhHHHHhcC---
Q psy9912 12 LTDVIAWLETG-GEVAVFDATNSTIDRRKMIHEMVVDKM---------GYKLFFVESVCD--DPSIIEQNIMEVKVN--- 76 (366)
Q Consensus 12 ~~d~~~~l~~~-g~vai~daTN~t~e~r~~i~~~~~~~~---------~~~~~~iE~~~d--~~~vi~~ni~~~k~~--- 76 (366)
++.+++-|.+. ..|.|.|-.|-...-|+.|.+. +... +.+.+-+-..-+ .+++.+-...+....
T Consensus 43 ~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~-~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDN 121 (168)
T PF08303_consen 43 IKAVLELLAKDTHPVVIADRNNHQKRERKQLFED-VSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDN 121 (168)
T ss_pred HHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHH-HHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcC
Confidence 34455556544 8999999999988877777765 3322 333333333332 333333333222222
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHhHHhhceeCchhhHHhhhhHhhhc
Q psy9912 77 SPDYQDMN--REAALQDFLQRIMHYEERYEALNEESEAALSFMRIYN 121 (366)
Q Consensus 77 ~pdy~~~~--~e~a~~~~~~r~~~~~~~y~p~~~~~~~~~~~ik~id 121 (366)
|--.+.-. .+ ....=+.-+-..|+|.+.+.+.|..|=-+||
T Consensus 122 HQTika~~~~~~----~~~~Im~gFi~rfep~~~~~~pD~~FD~vI~ 164 (168)
T PF08303_consen 122 HQTIKADSKDEK----KVEGIMEGFIKRFEPVDPDREPDSGFDHVID 164 (168)
T ss_pred cceeecCCCCHH----HHHHHHHHHHHhcCCCCCCCCCccccCEeEe
Confidence 22222222 22 2223333445678888766555555555544
No 80
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.16 E-value=4e+02 Score=24.36 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCCCCC
Q psy9912 4 RTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDM 83 (366)
Q Consensus 4 r~~~~~~~~~d~~~~l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy~~~ 83 (366)
|+-.-..+..-+.+-++ ....|-|+||--+.-|..+.-. ++++...--.|-..|-=..+++.|.. .+. ++
T Consensus 57 res~~ks~~rlldSalk--n~~VIvDdtNYyksmRrqL~ce-ak~~~tt~ciIyl~~plDtc~rrN~e-----rge--pi 126 (261)
T COG4088 57 RESFLKSVERLLDSALK--NYLVIVDDTNYYKSMRRQLACE-AKERKTTWCIIYLRTPLDTCLRRNRE-----RGE--PI 126 (261)
T ss_pred HHHHHHHHHHHHHHHhc--ceEEEEecccHHHHHHHHHHHH-HHhcCCceEEEEEccCHHHHHHhhcc-----CCC--CC
Confidence 33344444444444454 4788999999999877666655 66665555668888888888888842 222 44
Q ss_pred CHHHHHHHHHHHHH
Q psy9912 84 NREAALQDFLQRIM 97 (366)
Q Consensus 84 ~~e~a~~~~~~r~~ 97 (366)
..| .++.+..|++
T Consensus 127 p~E-vl~qly~RfE 139 (261)
T COG4088 127 PEE-VLRQLYDRFE 139 (261)
T ss_pred CHH-HHHHHHHhhc
Confidence 555 6577766654
No 81
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=29.09 E-value=87 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=34.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec---hHHHHHHHHHHhc
Q psy9912 260 RYPRGESYEDLVARLEPVIMELERQGNVLVVSH---QAVLRCLLAYFLD 305 (366)
Q Consensus 260 ~~p~gES~~d~~~R~~~~i~~l~~~~~vlIVsH---~~~ir~l~~~~~~ 305 (366)
.+..+++..++.+++...+.++..++.|+|.+- |++-.....++..
T Consensus 34 ~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~ 82 (116)
T TIGR00824 34 PFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD 82 (116)
T ss_pred EcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh
Confidence 345689999999999999999866677888876 4566665555533
No 82
>KOG3672|consensus
Probab=28.76 E-value=59 Score=31.98 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=33.6
Q ss_pred CCCHhhHHHHHHHHHHHhcC-------------CCCCcEEEecchHHHHHHHHhc
Q psy9912 174 SLSERGQLYSQALGKFIAQQ-------------DIPGLRIWTSWLKRTIQTVATC 215 (366)
Q Consensus 174 ~LT~~G~~qA~~l~~~l~~~-------------~~~~~~i~tSpl~Ra~qTA~~i 215 (366)
.||.+|..|--.+|++++.. ...-..|+|+-..||.|+|-.+
T Consensus 168 ~LT~~G~~QhL~~G~~~r~~Y~k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~ 222 (487)
T KOG3672|consen 168 MLTAEGALQHLRLGKYFRHRYEKTKLKADPNQRSVADLYVVTTKYNRTVQSALAF 222 (487)
T ss_pred ceeHHhHHHHHhhhHHHHHHHhhccccCCccccccceeEEEeccccHHHHHHHHH
Confidence 58999999999999988642 1122359999999999999876
No 83
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.09 E-value=1.7e+02 Score=27.04 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCchHHHH-HHHHHHHHhhcCCeEEEEE
Q psy9912 11 ALTDVIAWLETGGEVAVFDATNSTIDRR-KMIHEMVVDKMGYKLFFVE 57 (366)
Q Consensus 11 ~~~d~~~~l~~~g~vai~daTN~t~e~r-~~i~~~~~~~~~~~~~~iE 57 (366)
..++|.+|+++.+==+|.|||..-+..- +.+.+. |++.|+..+..|
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a-~~~~~ipylR~e 100 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEA-CRELGIPYLRFE 100 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHH-HhhcCcceEEEE
Confidence 3578999998887777899999999864 455566 888888665444
No 84
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=26.87 E-value=1.2e+02 Score=27.84 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEechHHHHH
Q psy9912 264 GESYEDLVARLEPVIMELERQGNVLVVSHQAVLRC 298 (366)
Q Consensus 264 gES~~d~~~R~~~~i~~l~~~~~vlIVsH~~~ir~ 298 (366)
-+|+.|..+|+...+......+..++|||+++...
T Consensus 126 i~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 126 VISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGL 160 (238)
T ss_pred CCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCC
Confidence 56899999999888864444467899999997543
No 85
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=26.78 E-value=3.4e+02 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=27.9
Q ss_pred EeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHH
Q psy9912 28 FDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIM 71 (366)
Q Consensus 28 ~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~ 71 (366)
..+|+....+|.++.+ .+..+.||.+.|+.+.+.+....
T Consensus 72 iv~s~~~~~~r~~~~~-----~~~~~~~v~l~a~~~~l~~Rl~~ 110 (163)
T PRK11545 72 IVCSALKKHYRDLLRE-----GNPNLSFIYLKGDFDVIESRLKA 110 (163)
T ss_pred EEEecchHHHHHHHHc-----cCCCEEEEEEECCHHHHHHHHHh
Confidence 3489998888866443 45667888888888777666544
No 86
>PRK00279 adk adenylate kinase; Reviewed
Probab=25.11 E-value=3.8e+02 Score=23.55 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCeE-EEEEEEeCCHHHHHHhHHHHh------cCCCC----------------CC
Q psy9912 25 VAVFDATNSTIDRRKMIHEMVVDKMGYKL-FFVESVCDDPSIIEQNIMEVK------VNSPD----------------YQ 81 (366)
Q Consensus 25 vai~daTN~t~e~r~~i~~~~~~~~~~~~-~~iE~~~d~~~vi~~ni~~~k------~~~pd----------------y~ 81 (366)
--|+|+.=.+.+....+.+. +...+..+ .+|.+-|+++.+++...++.. +.|-. +.
T Consensus 80 g~VlDGfPr~~~qa~~l~~~-l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEM-LKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CEEEecCCCCHHHHHHHHHH-HHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 45799976666666666555 55555443 578888999888887776532 01111 11
Q ss_pred -CCCHHHHHHHHHHHHHhHHhhceeCc
Q psy9912 82 -DMNREAALQDFLQRIMHYEERYEALN 107 (366)
Q Consensus 82 -~~~~e~a~~~~~~r~~~~~~~y~p~~ 107 (366)
.-+. ....+.+|+..|.....|+.
T Consensus 159 ~r~dd--~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 159 QRADD--NEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred CCCCC--CHHHHHHHHHHHHHhhHHHH
Confidence 1111 22367889999999888875
No 87
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.37 E-value=1.8e+02 Score=26.79 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCeEEEEeCCCchHHHH-HHHHHHHHhhcCCeEEEEE
Q psy9912 12 LTDVIAWLETGGEVAVFDATNSTIDRR-KMIHEMVVDKMGYKLFFVE 57 (366)
Q Consensus 12 ~~d~~~~l~~~g~vai~daTN~t~e~r-~~i~~~~~~~~~~~~~~iE 57 (366)
.++|.+||++.+==+|.|||..-+..= +.+.+. |++.++..+..|
T Consensus 54 ~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~a-c~~~~ipyiR~e 99 (248)
T PRK08057 54 AEGLAAYLREEGIDLVIDATHPYAAQISANAAAA-CRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHH-HHHhCCcEEEEe
Confidence 478999998775556799999999864 555566 888888766554
No 88
>PRK00889 adenylylsulfate kinase; Provisional
Probab=22.81 E-value=3.9e+02 Score=22.46 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=30.4
Q ss_pred hhcCCeEEEEeCCCchHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHHHHh
Q psy9912 19 LETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQN 69 (366)
Q Consensus 19 l~~~g~vai~daTN~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~n 69 (366)
+...|.+.|.|+++..++.|..+... . .++.+|.+-|+.+.+.+.+
T Consensus 72 ~~~~g~~vi~~~~~~~~~~~~~l~~~-~----~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 LTRHGVIVLVSAISPYRETREEVRAN-I----GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHhh-c----CCeEEEEEcCCHHHHHHhC
Confidence 33447888899998877777776665 3 2335566667766666664
No 89
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=4.2e+02 Score=23.73 Aligned_cols=59 Identities=19% Similarity=0.084 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcC--CeEEE-EeCCC-chHHHHHHHHHHHHhhcCCeEEEEEEEeCCHHHH
Q psy9912 7 CAIDALTDVIAWLETG--GEVAV-FDATN-STIDRRKMIHEMVVDKMGYKLFFVESVCDDPSII 66 (366)
Q Consensus 7 ~~~~~~~d~~~~l~~~--g~vai-~daTN-~t~e~r~~i~~~~~~~~~~~~~~iE~~~d~~~vi 66 (366)
....||+-|+.|+++- +.|-| |||.| ...|=++.+.+. .++.++++-..=|-|-|.++.
T Consensus 111 ~t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~-mK~~~I~g~~~lvk~~D~eLk 173 (211)
T COG2454 111 KTDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEK-MKSLGIPGEASLVKNADFELK 173 (211)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHH-HHhcCCCceeEeccCcCHHHH
Confidence 4567899999999764 66666 56666 566777777777 778787754445556666655
No 90
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=21.90 E-value=1.9e+02 Score=19.10 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEechHH
Q psy9912 266 SYEDLVARLEPVIMELERQGNVLVVSHQAV 295 (366)
Q Consensus 266 S~~d~~~R~~~~i~~l~~~~~vlIVsH~~~ 295 (366)
++.++..++..++.++..++.|+|.-||..
T Consensus 3 ~~te~r~~~~~~l~~v~~~~pv~It~~g~~ 32 (52)
T TIGR01552 3 SLSEAKNKLGELLKRVRDGEPVTITKRGRP 32 (52)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 467888889999988887667888888764
No 91
>PF08602 Mgr1: Mgr1-like, i-AAA protease complex subunit; InterPro: IPR013911 The Saccharomyces cerevisiae (Baker's yeast) Mgr1 protein has been shown to be required for mitochondrial viability in yeast lacking mitochondrial DNA. It is a mitochondrial inner membrane protein, which interacts with Yme1 and is a new subunit of the i-AAA protease complex [, ].
Probab=21.06 E-value=3.9e+02 Score=26.14 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcC---CeEEEEeCCCch------HHHHHHHH-HHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCC-
Q psy9912 10 DALTDVIAWLETG---GEVAVFDATNST------IDRRKMIH-EMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSP- 78 (366)
Q Consensus 10 ~~~~d~~~~l~~~---g~vai~daTN~t------~e~r~~i~-~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~p- 78 (366)
.-.+|++.|-++| ..|-+-||+|.+ .|=++-++ ..++.+.|-++ .|=+.|
T Consensus 161 kffndiik~yhegidptk~kvkd~~sg~~~s~n~pevkqsval~Raq~eagnp~-------------------skWFGP~ 221 (363)
T PF08602_consen 161 KFFNDIIKYYHEGIDPTKIKVKDAMSGNPLSTNIPEVKQSVALVRAQAEAGNPP-------------------SKWFGPY 221 (363)
T ss_pred HHHHHHHHHHhcCCCcceeEeeecCCCCcccCCcHHHHHHHHHHHHHHHCCCCC-------------------cccccCc
Confidence 4578999999999 568888997643 45555544 22144444332 122444
Q ss_pred CCCCCCHHHHHHHHHHHHHhHH
Q psy9912 79 DYQDMNREAALQDFLQRIMHYE 100 (366)
Q Consensus 79 dy~~~~~e~a~~~~~~r~~~~~ 100 (366)
+|++|+.. +|.+|+++|-
T Consensus 222 eYKPMSf~----E~ldklE~~L 239 (363)
T PF08602_consen 222 EYKPMSFN----EWLDKLEYWL 239 (363)
T ss_pred ccccCCHH----HHHHHHHHHH
Confidence 79999877 6777777663
No 92
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.03 E-value=1.1e+02 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEechHHHH
Q psy9912 271 VARLEPVIMELERQGNVLVVSHQAVLR 297 (366)
Q Consensus 271 ~~R~~~~i~~l~~~~~vlIVsH~~~ir 297 (366)
..+++.+|.+|...-+|+||||..--.
T Consensus 185 T~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 185 TLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred HHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 467888999999778999999986433
No 93
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.53 E-value=2e+02 Score=26.81 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeCCHHHHHHhHHHHhcCCCCC
Q psy9912 39 KMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDY 80 (366)
Q Consensus 39 ~~i~~~~~~~~~~~~~~iE~~~d~~~vi~~ni~~~k~~~pdy 80 (366)
++|.+. +.++|+.+.++.++.|++.-|..-++...-+ +|+
T Consensus 24 ~~la~~-L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~ 63 (255)
T COG1058 24 AFLADE-LTELGVDLARITTVGDNPDRIVEALREASER-ADV 63 (255)
T ss_pred HHHHHH-HHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCE
Confidence 677887 8889999999999999999888888765544 775
No 94
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.06 E-value=2.5e+02 Score=18.38 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHHHHHHhhcC-CeEEEEeCCCchHHHHHHHHHHHHhhcCCe
Q psy9912 12 LTDVIAWLETG-GEVAVFDATNSTIDRRKMIHEMVVDKMGYK 52 (366)
Q Consensus 12 ~~d~~~~l~~~-g~vai~daTN~t~e~r~~i~~~~~~~~~~~ 52 (366)
-+.+..|+++. ++.-.|... ++..|.++.++ +...+.+
T Consensus 5 ~~~l~~f~~~~~~~~~~~~p~--~~~~R~~vH~l-a~~~~L~ 43 (59)
T cd02325 5 EEELEAFAKDAAGKSLELPPM--NSYERKLIHDL-AEYYGLK 43 (59)
T ss_pred HHHHHHHHHhhcCCeEEcCCC--CHHHHHHHHHH-HHHCCCE
Confidence 45677888877 788888888 67788999998 8887743
Done!