RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9912
(366 letters)
>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzyme occurs as
a bifunctional enzyme with fructose-2,6-bisphosphatase.
The bifunctional enzyme catalyzes both the synthesis and
degradation of fructose-2,6-bisphosphate, a potent
regulator of glycolysis. This enzyme contains a P-loop
motif.
Length = 219
Score = 186 bits (475), Expect = 9e-58
Identities = 77/151 (50%), Positives = 114/151 (75%), Gaps = 3/151 (1%)
Query: 1 MRIRTQCAIDALTDVIAWL-ETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESV 59
M+IR QCA+ AL DV+A+L E G+VA+FDATN+T +RRKMI + ++ G K+FF+ES+
Sbjct: 71 MKIREQCALAALNDVLAYLNEESGQVAIFDATNTTRERRKMILDFA-EENGLKVFFLESI 129
Query: 60 CDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRI 119
CDDP II +NI VK +SPDY+ E A+ DF++RI YE++YE L+E E LS++++
Sbjct: 130 CDDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRIECYEKQYEPLDEHDE-DLSYIKV 188
Query: 120 YNTGEKVLVHKHEGHIQARIVYYLMNIHIVP 150
+ G+ ++V+ +G++Q+RIVYYLMNIH+ P
Sbjct: 189 IDVGQSIVVNNVQGYLQSRIVYYLMNIHVTP 219
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 140 bits (354), Expect = 5e-40
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 149 VPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLK 206
+ +YL RHGE+E N++G + G DS L+E G+ ++AL + +A +DI I++S LK
Sbjct: 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60
Query: 207 RTIQTVA----TCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYP 262
R QT P E L EID G E +T +++AE+ P++ +A + P
Sbjct: 61 RAQQTAEPLAEELGLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPP 120
Query: 263 RGESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLH 319
GES D+ R+ + EL R NVLVVSH V+R LLAY L +EL L++
Sbjct: 121 GGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRALLAYLLGLDLEELWRLRLDNA 180
Query: 320 TIIKL 324
++ L
Sbjct: 181 SVTVL 185
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 137 bits (346), Expect = 2e-39
Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQ-DIPGLRIWTSWLKRT 208
+YL RHGE+E N +G + G D L+E G+ ++ALG+ +A +++S LKR
Sbjct: 1 RLYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRA 60
Query: 209 IQTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPR---GE 265
QT L E D G E +T+++IA KYP+++ A + P GE
Sbjct: 61 RQTAEALAIALGLP-GLRERDFGAWEGLTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGE 119
Query: 266 SYEDLVARLEPVIMELERQ-----GNVLVVSHQAVLRCL 299
S DLV R+EP + EL NVL+VSH V+R L
Sbjct: 120 SLADLVERVEPALDELIATADASGQNVLIVSHGGVIRAL 158
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 121 bits (305), Expect = 2e-33
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Query: 152 TIYLTRHGESEHNLQGIIG-GDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+YL RHGE+E N++ + G DS L+E G+ ++ALGK + RI++S L R IQ
Sbjct: 1 RLYLVRHGETEWNVERLQGDTDSPLTELGREQARALGKRLKGIPF--DRIYSSPLLRAIQ 58
Query: 211 TVA----TCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGES 266
T P L E D G E +T+++I ++P++ A +R P GES
Sbjct: 59 TAEILAEALGLPIIVDPRLRERDFGDWEGLTFDEIKAEFPEELRAWLEDPADFRPPGGES 118
Query: 267 YEDLVARLEPVIMEL---ERQGNVLVVSHQAVLRCL 299
D+ R+E + EL GNVL+VSH V+R L
Sbjct: 119 LADVYERVEAALEELLAKHPGGNVLIVSHGGVIRAL 154
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 116 bits (293), Expect = 1e-31
Identities = 58/189 (30%), Positives = 77/189 (40%), Gaps = 54/189 (28%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
+YL RHGESE N +G G D L+E+G+ ++ALGK + + I RI++S LKR I
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 210 QTV-----ATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRG 264
QT P E L E
Sbjct: 61 QTAEIILEELPGLPVEVDPRLRE------------------------------------- 83
Query: 265 ESYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTI 321
AR+ P + EL NVL+VSH VLR LLAY L S +++ L +P +I
Sbjct: 84 -------ARVLPALEELIAPHDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPNGSI 136
Query: 322 IKLTPVAYG 330
L G
Sbjct: 137 SVLELDENG 145
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 110 bits (276), Expect = 2e-26
Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 52/381 (13%)
Query: 1 MRIRTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVD----KMGYKLFFV 56
RI A D +T I +T G VAV D TN+T RR + + + +M ++ FV
Sbjct: 276 FRIAKAIAHD-MTTFIC--KTDG-VAVLDGTNTTHARRMALLRAIRETGLIRMT-RVVFV 330
Query: 57 ESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQR----IMHYEERYEALNEESEA 112
E V ++ I +N++ K P A +DF+ R I E Y++LN ++
Sbjct: 331 EVVNNNSETIRRNVLRAKEMFPG--------APEDFVDRYYEVIEQLEAVYKSLNPVTDC 382
Query: 113 ALSFMRIYNTGEKVLVHKHEGHIQARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGGD 172
L+++RI +T + ++ G + +R+ Y L N++ P +YLTR GE L G IGG+
Sbjct: 383 DLTYIRIEDT-QTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIGGN 441
Query: 173 SSLSERGQLYSQALGK-FIAQQDIPGLRIWTSWLKRTIQTV-----------ATCPAPQE 220
S L+ERG+ YS+AL + F + + +S KR +TV +T A
Sbjct: 442 SRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASS 501
Query: 221 RWKALN----------EIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDL 270
+ +LN +I+ G CE + P+ + + +P GE +
Sbjct: 502 QSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQV 561
Query: 271 V-ARLEPVIMELERQGN-VLVVSHQAVLRCLLAYFLDKSADELP-----YLQVPLHTIIK 323
ARLEP I +++ VLVVSH +L+ L +YF+ + + + +P +IK
Sbjct: 562 FNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIK 621
Query: 324 LTPVAYGCKMEMIKLPIDAVD 344
+ V + E+I L VD
Sbjct: 622 IRMVGFNRVAELIDLS-KEVD 641
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 98.5 bits (246), Expect = 1e-24
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 153 IYLTRHGESEHNLQGIIG-GDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQT 211
+YL RHGE++ N G D L+E G+ + AL + + D+P +++S L R +
Sbjct: 1 LYLIRHGETDVNAGLCYGQTDVPLAESGEEQAAALREKL--ADVPFDAVYSSPLSRCREL 58
Query: 212 VATC----PAPQERWKALNEIDAGICEEMTYEQIAEKYP--DDFSARDCAKFTYRYPRGE 265
P + L E+D G E ++++I E YP D ++A R P GE
Sbjct: 59 AEILAERRGLPIIKDDRLREMDFGDWEGRSWDEIPEAYPELDAWAAD---WQHARPPGGE 115
Query: 266 SYEDLVARLEPV---IMELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
S+ D R+ +++ NVL+V+H V+R LLA+ L ++ V
Sbjct: 116 SFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHLLGLPLEQWWSFAVE 170
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 96.7 bits (241), Expect = 3e-24
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 48/181 (26%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
+YL RHGE E N +G G D L+E+G+ ++ LGK + ++ I RI++S LKR I
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60
Query: 210 QTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYED 269
QT I G+ E + E
Sbjct: 61 QT-------------AEIILEGLFEGLPVEVDPR-------------------------- 81
Query: 270 LVARLEPVIMELERQ-----GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKL 324
AR+ ++EL + NVL+VSH +R LLA L S +E+ L +P +I+ L
Sbjct: 82 --ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLPNGSILVL 139
Query: 325 T 325
Sbjct: 140 E 140
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 75.1 bits (185), Expect = 6e-16
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
++L RHGE++ N+ G+ G + L+ RG +Q L + +D+P + S L+R
Sbjct: 3 LWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLL--RDVPFDLVLCSELERAQH 60
Query: 211 T----VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYP-RGE 265
T ++ P LNE+ G E + + ++ ++++A C + + P GE
Sbjct: 61 TARLVLSDRQLPVHIIPELNEMFFGDWEMRHHRDLMQEDAENYAAW-CNDWQHAIPTNGE 119
Query: 266 SYEDLVARLEPVIMEL---ERQGNVLVVSHQAVLRCLLAYFLD 305
++ R+E I L + N+L+VSHQ VL L+A L
Sbjct: 120 GFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLIARLLG 162
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 66.9 bits (164), Expect = 7e-13
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 39/206 (18%)
Query: 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
+ L RHG+SE N + + G D L+E+G ++A GK + ++ + +TS LKR
Sbjct: 2 MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRA 61
Query: 209 IQT--VATCPA-----PQERWKALNEIDAGICEEMTYEQIAEKY---------------- 245
I+T + + P + LNE G + + + A KY
Sbjct: 62 IKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPP 121
Query: 246 -PDDFSARDCAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNVLVVS 291
+ RY P ES +D V R+ P I L+ NVL+V+
Sbjct: 122 PKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVA 181
Query: 292 HQAVLRCLLAYFLDKSADELPYLQVP 317
H LR L+ Y S +++ L +P
Sbjct: 182 HGNSLRALIKYLEGISDEDILDLNIP 207
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 64.3 bits (156), Expect = 4e-12
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
T+Y+TRHGE+E N+ + G +S+L+E G L ++ LG+ + +D+ I++S +RT+
Sbjct: 4 TVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERM--KDLSIHAIYSSPSERTL 61
Query: 210 QTVATCPA----PQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGE 265
T P + EI+ GI E T + I +YPDD ++ GE
Sbjct: 62 HTAELIKGERDIPIIADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGE 121
Query: 266 SYEDLVAR-LEPVIMELERQG--NVLVVSHQAVLRCLLAYF 303
++E + R +E + + LE+ ++L+VSH A + L+ +F
Sbjct: 122 NFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLVGHF 162
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 60.0 bits (146), Expect = 5e-10
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
P + L RHG++E ++Q G + L+E G+ + A +++A + + +S L+R
Sbjct: 171 PTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARGGIDA-VVSSPLQR 229
Query: 208 TIQTVATCPA----PQERWKALNEIDAGICEEMTYEQIAEKYPDDFSA--RDCAKFTYRY 261
T A L E D G E +T+ + AE+ P+ A D +
Sbjct: 230 ARDTAAAAAKALGLDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTS---VAP 286
Query: 262 PRGESYEDLVARLEPVIMELERQ---GNVLVVSH 292
P GES++ + R+ L + VLVVSH
Sbjct: 287 PGGESFDAVARRVRRARDRLIAEYPGATVLVVSH 320
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 55.1 bits (133), Expect = 1e-08
Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 41/203 (20%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGESE N + G D LSE+GQ ++ G+ + ++ +TS LKR I T+
Sbjct: 5 LVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTL 64
Query: 213 ATCP-------APQER-WKALNEIDAGICEEMTYEQIAEKY-----------------PD 247
P ++ W+ LNE G + + + A KY P
Sbjct: 65 NIALDELDQLWIPVKKSWR-LNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPI 123
Query: 248 DFSARDCAKFTYRY--------PRGESYEDLVARLEP-----VIMELERQGNVLVVSHQA 294
D S RY P ES +D +AR+ P + +L VL+V+H
Sbjct: 124 DESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGN 183
Query: 295 VLRCLLAYFLDKSADELPYLQVP 317
LR L+ + S +E+ L +P
Sbjct: 184 SLRALVKHLEGISDEEILELNIP 206
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 51.6 bits (124), Expect = 2e-07
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
T+ L RHGESE N + + G D L+E+G+ ++ G+ +A+ + ++TS L+R
Sbjct: 4 TYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRR 63
Query: 208 TIQT--VATCPA-----PQER-WKALNEIDAGICEEMTYEQIAEKYPDD-FSA------- 251
I+T +A A P R W+ LNE G + + +Y ++ F
Sbjct: 64 AIRTANLALDAADRLWIPVRRSWR-LNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDT 122
Query: 252 -----RDCAKFTY----RY------PRGESYEDLVARLEP-----VIMELERQGNVLVVS 291
D ++++ RY PR E +D+VAR P ++ +L+ VL+ +
Sbjct: 123 PPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAA 182
Query: 292 HQAVLRCLLAYFLDKSADELPYLQVP 317
H LR L+ + S +++ L +P
Sbjct: 183 HGNSLRALVKHLDGISDEDIAGLNIP 208
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 51.3 bits (123), Expect = 2e-07
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+YL RHGE++ N + I G DS L+ +G+ + + + + I I +S L RT +
Sbjct: 4 VYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGIT--HIISSDLGRTRR 61
Query: 211 T----VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTY--RYPRG 264
T C L E++ G+ E+ + + E+ ++ R T R P G
Sbjct: 62 TAEIIAQACGCDIIFDPRLRELNMGVLEKRHIDSLTEE--EEGWRRQLVNGTVDGRIPEG 119
Query: 265 ESYEDLVARLEPVI---MELERQGNVLVVSHQAVLRCLLAYFL 304
ES ++L R+ + +EL + L+VSH L CL++ L
Sbjct: 120 ESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGCLVSTIL 162
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase family
protein (pfam00300). Another member of the trio is a
probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 48.5 bits (116), Expect = 1e-06
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 35/176 (19%)
Query: 152 TIYLTRHGESEHNLQGIIGGDS---SLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
T+ L RHG S N G + G + L ERG+ + AL + +A D+P I +S L+R
Sbjct: 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA--DLPIAAIVSSPLERC 58
Query: 209 IQTV----ATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDF--------SARDCAK 256
+T P + L E D G + T ++ E + SA
Sbjct: 59 RETAEPIAEARGLPPRVDERLGECDYG---DWTGRELKELAKEPLWPVVQAHPSA----- 110
Query: 257 FTYRYPRGESYEDLVARLEPVIMELERQGNV--------LVVSHQAVLRCLLAYFL 304
+P GES + AR + E + + + SH V++ +LA L
Sbjct: 111 --AVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSVLADAL 164
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 47.3 bits (113), Expect = 4e-06
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 41/194 (21%)
Query: 164 NLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVAT------- 214
N + G D LSE+G ++ GK + ++ ++TS LKR I+T
Sbjct: 2 NKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQ 61
Query: 215 CPAPQER-WKALNEIDAGICEEMTYEQIAEKYPDD--------FSAR--DCAKFTYRY-- 261
P + W+ LNE G + + + AEK+ ++ + K RY
Sbjct: 62 LHVPVIKSWR-LNERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG 120
Query: 262 -------------PRGESYEDLVARLEP----VIMELERQG-NVLVVSHQAVLRCLLAYF 303
P E +D V R+ P I G VLV +H LR L+ Y
Sbjct: 121 NDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYL 180
Query: 304 LDKSADELPYLQVP 317
S +++ L +P
Sbjct: 181 DKMSEEDILELNIP 194
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 46.6 bits (111), Expect = 5e-06
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRI---WTSW 204
RT+ L RHG+SE NL+ + G D L+E+G ++A G+ + GL+ +TS
Sbjct: 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA---GLKFDIAFTSA 58
Query: 205 LKRTIQT-------VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKF 257
L R T + R +ALNE D G + + K+ ++ +
Sbjct: 59 LSRAQHTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSY 118
Query: 258 TYRYPRGESYEDLVAR--------LEPVIMELERQGNVLVVSHQAVLRCLL 300
P GES +D AR + P ++ ER VLV +H LR L+
Sbjct: 119 DVPPPGGESLKDTGARVLPYYLQEILPRVLRGER---VLVAAHGNSLRALV 166
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 46.1 bits (109), Expect = 9e-06
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 39/196 (19%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHG+SE NL G D LSE+G ++ G+ I + + + +TS L R I+T+
Sbjct: 6 LIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTL 65
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKYPDD---------------FS 250
P+ + LNE G + + ++ AEKY D+
Sbjct: 66 HYALEESDQLWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLD 125
Query: 251 ARD--CAKFTYRY--------PRGESYEDLVARLEP-----VIMELERQGNVLVVSHQAV 295
A D A RY P GE+ + + R+ P + +L NV++ +H
Sbjct: 126 ADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNS 185
Query: 296 LRCLLAYFLDKSADEL 311
LR L Y + S +++
Sbjct: 186 LRALTKYIENISDEDI 201
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 44.3 bits (105), Expect = 3e-05
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 42/203 (20%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHG+S N + + G D LS++G + A G+ I +D+P I+TS L R++ T
Sbjct: 6 LLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKI--KDLPIDCIFTSTLVRSLMTA 63
Query: 213 ATC--------------PAPQERW-------------------KALNEIDAGICEEMTYE 239
++W ALNE G +
Sbjct: 64 LLAMTNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKA 123
Query: 240 QIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPV----IMELERQG-NVLVVSHQA 294
+ AEK+ ++ + P+GES ED R P I+ +QG NV V +H
Sbjct: 124 ETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGN 183
Query: 295 VLRCLLAYFLDKSADELPYLQVP 317
LR L+ S +E+ L++P
Sbjct: 184 SLRSLIMDLEKLSEEEVLSLELP 206
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 40.2 bits (95), Expect = 8e-04
Identities = 58/204 (28%), Positives = 84/204 (41%), Gaps = 50/204 (24%)
Query: 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQ----DIPGLRIWTSW 204
+ L RHGES+ N + G D LSE+G ++A GK + ++ D+ +TS
Sbjct: 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVA----YTSV 56
Query: 205 LKRTIQTVATCPA-------PQER-WKALNEIDAGICEEMTYEQIAEKY----------- 245
LKR I+T+ P E+ W+ LNE G + + + A KY
Sbjct: 57 LKRAIRTLWIVLDELDQMWLPVEKSWR-LNERHYGALQGLNKAETAAKYGDEQVKIWRRS 115
Query: 246 ----PDDFSARD--CAKFTYRY--------PRGESYEDLVARLEP----VIMELERQGN- 286
P D RY P ES +D +AR+ P I + G
Sbjct: 116 YDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKR 175
Query: 287 VLVVSHQAVLRCLLAYFLDKSADE 310
VL+ +H LR L+ Y LD +DE
Sbjct: 176 VLIAAHGNSLRALVKY-LDNISDE 198
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 40.0 bits (93), Expect = 0.001
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 157 RHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVAT 214
RHGESE N + G D LSE+G + GK I + I +TS LKR I+T
Sbjct: 8 RHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNL 67
Query: 215 CP-------APQERWKALNEIDAGICEEMTYEQIAEKYPDD 248
P E+ LNE G + AE++ D+
Sbjct: 68 ALEASDQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDE 108
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 38.0 bits (89), Expect = 0.002
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+YL RHG++E GI D L+ERG+ ++ + ++A Q + + S R Q
Sbjct: 2 MRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQ 61
Query: 211 TVATCPAPQERW-KALNEIDAGICEEMTYE 239
T E + L E + EE+
Sbjct: 62 TA-------EIVAEHLGEKKVEVFEELLPN 84
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 36.9 bits (85), Expect = 0.011
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 51/206 (24%)
Query: 157 RHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVAT 214
RHG SE N + + G D +L+ERG ++A GK + + +TS L R I+T
Sbjct: 7 RHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNI 66
Query: 215 CPA-------PQERWKALNEIDAGICEEMTYEQIAEKY---------------PDDFSAR 252
PQ + LNE G + + + AE+Y P D +
Sbjct: 67 VLEESNQLWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQ 126
Query: 253 D--CAKFTYRY--------PRGES-----------YEDLVARLEPVIMELERQGNVLVVS 291
D A RY P E+ +ED +A P ++ +R VLV +
Sbjct: 127 DPNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIA---PALLSGKR---VLVAA 180
Query: 292 HQAVLRCLLAYFLDKSADELPYLQVP 317
H LR L + S ++ L++P
Sbjct: 181 HGNSLRALAKHIEGISDADIMDLEIP 206
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 36.4 bits (84), Expect = 0.014
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 149 VPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLK 206
+P+ I L RHG+SE N + + G D +LSE+G + G+ + + +I +TS L
Sbjct: 1 MPKLI-LCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLT 59
Query: 207 RTIQT 211
R + T
Sbjct: 60 RALDT 64
>gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional.
Length = 203
Score = 34.8 bits (80), Expect = 0.042
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGE+E + G G + L+E G+ ++ G+ + + ++ + +S +R + T
Sbjct: 10 LLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTA 69
Query: 213 ATCP-APQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLV 271
E L E D G E +T QI E PD +T+ P GES +
Sbjct: 70 KLAGLTVDEVSGLLAEWDYGSYEGLTTPQIRESEPDWLV------WTHGCPGGESVAQVN 123
Query: 272 ARLEPVI---MELERQGNVLVVSHQAVLRCLLAYFLD 305
R + + +E +V+ VSH R ++ +++
Sbjct: 124 ERADRAVALALEHMESRDVVFVSHGHFSRAVITRWVE 160
>gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. [Regulatory
functions, Protein interactions].
Length = 152
Score = 32.9 bits (75), Expect = 0.12
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 153 IYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQT 211
+++ RHG++ L L+ G S+ + +++ Q + RI S R QT
Sbjct: 3 LFIMRHGDAA--LDAASDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQT 59
>gnl|CDD|190601 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
protein.
Length = 468
Score = 33.2 bits (77), Expect = 0.23
Identities = 11/62 (17%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 40 MIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHY 99
++ E + L +++ + D +I + I++ +N ++ +E L++ L++I+
Sbjct: 16 IVREFKIGGRKAALVYIDGLVDK-DLINEYILKPLMNEELEEEEEKEDILEEILKKILPI 74
Query: 100 EE 101
E
Sbjct: 75 SE 76
>gnl|CDD|212548 cd11710, GINS_A_psf1, Alpha-helical domain of GINS complex protein
Psf1. Psf1 is a component of the GINS tetrameric
protein complex. Psf1 is mainly expressed in highly
proliferative tissues, such as blastocysts, adult bone
marrow, and testis, in which the stem cell system is
active. Loss of Psf1 causes embryonic lethality. GINS is
a complex of four subunits (Sld5, Psf1, Psf2 and Psf3)
that is involved in both initiation and elongation
stages of eukaryotic chromosome replication. Besides
being essential for the maintenance of genomic
integrity, GINS plays a central role in coordinating DNA
replication with cell cycle checkpoints and is involved
in cell growth. The eukaryotic GINS subunits are
homologous and homologs are also found in the archaea;
the complex is not found in bacteria. The four subunits
of the complex consist of two domains each, termed the
alpha-helical (A) and beta-strand (B) domains. The A and
B domains of Sld5/Psf1 are permuted with respect to
Psf1/Psf3.
Length = 129
Score = 31.1 bits (71), Expect = 0.31
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 265 ESYEDLVARLEPVIMELERQGNV--LVVSHQAVL---RCLLAY 302
+ YE+ A LE E E G + L+V H ++L RCLLAY
Sbjct: 36 DLYEENQALLEEAQEEEEDPGLIPGLLVRHLSILRNKRCLLAY 78
>gnl|CDD|119438 cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and
MGMT) reverses O6-alkylation DNA damage by transferring
O6-alkyl adducts to an active site cysteine
irreversibly, without inducing DNA strand breaks. ATases
are specific for repair of guanines with O6-alkyl
adducts, however human ATase is not limited to
O6-methylguanine, repairing many other adducts at the
O6-position of guanine as well. ATase is widely
distributed among species. Most ATases have N- and
C-terminal domains. The C-terminal domain contains the
conserved active-site cysteine motif (PCHR), the
O6-alkylguanine binding channel, and the
helix-turn-helix (HTH) DNA-binding motif. The active
site is located near the recognition helix of the HTH
motif. While the C-terminal domain of ATase contains
residues that are necessary for DNA binding and alkyl
transfer, the function of the N-terminal domain is still
unknown. Removal of the N-terminal domain abolishes the
activity of the C-terminal domain, suggesting an
important structural role for the N-terminal domain in
orienting the C-terminal domain for proper catalysis.
Some ATase C-terminal domain homologs are either
single-domain proteins that lack an N-terminal domain,
or have a tryptophan substituted in place of the
acceptor cysteine (i.e. the motif PCHR is replaced by
PWHR). ATase null mutant mice are viable, fertile, and
have a normal lifespan.
Length = 79
Score = 28.6 bits (65), Expect = 0.97
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 219 QER-WKALNEIDAGICEEMTYEQIAEKYPDDFSAR 252
Q R W+AL +I G E TY QIA+ +AR
Sbjct: 2 QRRVWEALRQIPYG--EVTTYGQIAKLAGTPKAAR 34
>gnl|CDD|201565 pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase,
DNA binding domain. This domain is a 3 helical bundle.
Length = 84
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 219 QERWKALNEIDAGICEEMTYEQIAEK 244
+ +AL +I G E TY IA+
Sbjct: 5 RRVLEALRQIPYG--EVTTYGDIAKA 28
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 29.3 bits (66), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 175 LSERGQLYSQALGKFIAQQDIPGLRIWTS---WLKRTIQTVATCPAPQERWKAL 225
L ER +LY QAL Q++P LR+W S +L + A A + KA
Sbjct: 291 LQERDRLY-QAL------QELPQLRVWPSAANFLYLRLSQDAALAALHQALKAQ 337
>gnl|CDD|213970 TIGR04357, CofD_rel_GAK, CofD-related protein, GAK system. Members
of this family are distantly related to CofD, the enzyme
LPPG:FO 2-phospho-L-lactate transferase, involved in
coenzyme F420 biosynthesis. This family appears to
belong to a biosynthesis cassette of unknown function.
Length = 368
Score = 29.1 bits (66), Expect = 3.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 257 FTYRYPRGESYEDLVARLEPVIMELERQGNVLVVSHQAVLRCL----LAYFLDK 306
F YR P+ S E L A L + + LV + +R L L +FL+
Sbjct: 77 FNYRLPKDASQEALRAEL----KAMASGRHPLVAAIPDPMRKLIRQHLRFFLEA 126
>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
Length = 416
Score = 29.1 bits (65), Expect = 3.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 76 NSPDYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVH 129
+ D D + ALQ +RI Y+E + N++ E ++ IY+ E V ++
Sbjct: 64 AAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESVECYEIYHPLESVGIY 117
>gnl|CDD|236718 PRK10574, PRK10574, putative major pilin subunit; Provisional.
Length = 146
Score = 28.1 bits (63), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 78 PDYQDMNREAALQDFLQRIMHY 99
P YQ+ ++AAL D LQ + Y
Sbjct: 28 PAYQNYLQKAALTDMLQTFVPY 49
>gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 390
Score = 28.3 bits (64), Expect = 6.6
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 265 ESYEDLVAR-LEPVIMELERQGNVLVVSHQAVL 296
E + D + LE I+EL+ + N +++S +AV+
Sbjct: 143 EDFSDFKGKTLEVKIIELDPEKNRVILSRRAVV 175
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 27.6 bits (62), Expect = 9.9
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 40 MIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMH- 98
+++E +V G F E+ P I QNI+ K+ P+ +++ EA D + +++
Sbjct: 190 ILYEFLV---GIPPFHGET----PEEIFQNILNGKIEWPEDVEVSDEA--IDLISKLLVP 240
Query: 99 -YEER 102
E+R
Sbjct: 241 DPEKR 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,202,988
Number of extensions: 1882426
Number of successful extensions: 1712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1665
Number of HSP's successfully gapped: 50
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)