RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9912
(366 letters)
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 439 bits (1131), Expect = e-153
Identities = 208/352 (59%), Positives = 273/352 (77%), Gaps = 2/352 (0%)
Query: 1 MRIRTQCAIDALTDVIAWL-ETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESV 59
++IR QCA+ AL DV +L E GG VAVFDATN+T +RR MI ++ GYK FFVES+
Sbjct: 100 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG-EQNGYKTFFVESI 158
Query: 60 CDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRI 119
C DP +I NI++VK+ SPDY + + + A +DF++RI YE YE+L+EE + LS+++I
Sbjct: 159 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKI 218
Query: 120 YNTGEKVLVHKHEGHIQARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGGDSSLSERG 179
+ G+ +V++ HIQ+RIVYYLMNIH+ PR+IYL RHGESE NL+G IGGD LS RG
Sbjct: 219 MDVGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRG 278
Query: 180 QLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEIDAGICEEMTYE 239
+ +S+ L +FI+ Q+I L+++TS +KRTIQT P E++K LNEIDAG+CEEMTYE
Sbjct: 279 REFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYE 338
Query: 240 QIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQGNVLVVSHQAVLRCL 299
+I + YP +F+ RD K+ YRYP+GESYEDLV RLEPVIMELERQ NVLV+ HQAV+RCL
Sbjct: 339 EIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQAVMRCL 398
Query: 300 LAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMIKLPIDAVDTHRPKPK 351
LAYFLDK+A+ELPYL+ PLHT++KLTPVAYGCK+E I L + AV+THR +P+
Sbjct: 399 LAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAVNTHRDRPQ 450
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 439 bits (1130), Expect = e-152
Identities = 206/361 (57%), Positives = 277/361 (76%), Gaps = 3/361 (0%)
Query: 1 MRIRTQCAIDALTDVIAWL-ETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESV 59
M++R QCA+ AL DV ++L + GG++AVFDATN+T +RR MI + +K FF+ESV
Sbjct: 96 MKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFA-KENDFKAFFIESV 154
Query: 60 CDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEALNE-ESEAALSFMR 118
CDDP+++ NIMEVK++SPDY+D N A+ DF++RI YE Y+ L+ + + LS ++
Sbjct: 155 CDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIK 214
Query: 119 IYNTGEKVLVHKHEGHIQARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGGDSSLSER 178
+ + G + LV++ + HIQ+RIVYYLMNIH+ PRTIYL RHGE+EHNLQG IGGDS LS R
Sbjct: 215 VIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSR 274
Query: 179 GQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTVATCPAPQERWKALNEIDAGICEEMTY 238
G+ ++ AL KF+ +Q++ LR+WTS LK TIQT P E+WKALNEIDAG+CEE+TY
Sbjct: 275 GKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTY 334
Query: 239 EQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQGNVLVVSHQAVLRC 298
E+I + YP++++ R+ K+ YRYP GESY+DLV RLEPVIMELERQ NVLV+ HQAVLRC
Sbjct: 335 EEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRC 394
Query: 299 LLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKMEMIKLPIDAVDTHRPKPKVGSELVI 358
LLAYFLDKSA+E+PYL+ PLHT++KLTPVAYGC++E I L +++V THR + + +
Sbjct: 395 LLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPN 454
Query: 359 P 359
P
Sbjct: 455 P 455
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 137 bits (347), Expect = 5e-39
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
+ L RHGE+ + G G + L++ G+ ++ G+ + + ++ + S +R
Sbjct: 10 NHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSPRRR 69
Query: 208 TIQTV-ATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGES 266
T+ T E L E D G E +T QI E PD P GES
Sbjct: 70 TLDTAKLAGLTVNEVTGLLAEWDYGSYEGLTTPQIRESEPDWLVWTH------GCPAGES 123
Query: 267 YEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
+ R + + +VL VSH R ++ ++ E +P
Sbjct: 124 VAQVNDRADSAVALALEHMSSRDVLFVSHGHFSRAVITRWVQLPLAEGSRFAMP 177
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 135 bits (343), Expect = 2e-38
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
T+YLTRHGE++ N++ + G DS L+E+G+ + LGK + + I+TS R +
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE--AVELAAIYTSTSGRAL 60
Query: 210 QT----VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGE 265
+T P + + L EI G E T+++I + P F A Y RGE
Sbjct: 61 ETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGE 120
Query: 266 SYEDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELP 312
+ D+ R + + + VL+V+H VL+ L+A F D D L
Sbjct: 121 RFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLW 170
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 123 bits (312), Expect = 2e-34
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 16/170 (9%)
Query: 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
++L RHGE+ N +G + G D L+ G+ ++ L + L ++S L R +
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP-----SLPAFSSDLLRARR 57
Query: 211 TVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDL 270
T + L EI G E +E + +Y + + P GES
Sbjct: 58 TAELAGFSPRLYPELREIHFGALEGALWETLDPRYKEALLRFQ----GFHPPGGESLSAF 113
Query: 271 VARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDK---SADELPYLQVP 317
R+ + L+ ++ +H V+R +L + + P
Sbjct: 114 QERVFRFLEGLK--APAVLFTHGGVVRAVLRALGEDGLVPPGSAVAVDWP 161
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 109 bits (275), Expect = 4e-28
Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 50/206 (24%)
Query: 151 RTIYLTRHGESEHNLQGIIGG---DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
+ + RHGE+++N ++ G D+ LS+ G + A G+++ D+ ++ S L+R
Sbjct: 4 FALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK--DLHFTNVFVSNLQR 61
Query: 208 TIQT--------VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTY 259
IQT + + L E G+ E E + + Y
Sbjct: 62 AIQTAEIILGNNLHSSATEMILDPLLRERGFGVAEGRPKEHLKNMANAAGQSC----RDY 117
Query: 260 RYPRGESYEDLVARLEPVIMELERQ---------------------------------GN 286
P GE+ E + R + + L ++ +
Sbjct: 118 TPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEADQPVIAGLADDGAQNVPVH 177
Query: 287 VLVVSHQAVLRCLLAYFLDKSADELP 312
L+VSH A +R + + ++ LP
Sbjct: 178 ALMVSHGAFIRISVRHLVEDLQCCLP 203
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 108 bits (272), Expect = 4e-28
Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 16/175 (9%)
Query: 150 PRTIYLTRHGESEHN--LQGIIGGDSSLSERGQLYSQA-LGKFIAQQDIPGLRIWTSWLK 206
IYL RHG+ + L G D + E Q Q + D+ I +S L
Sbjct: 5 TLNIYLMRHGKVDAAPGLHGQT--DLKVKEAEQ--QQIAMAWKTKGYDV--AGIISSPLS 58
Query: 207 RTIQT----VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYP 262
R P L E+D G + M ++ + E + A + + P
Sbjct: 59 RCHDLAQILAEQQLLPMTTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLP 117
Query: 263 RGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLLAYFLDKSADELPYLQ 315
ES R+ ++ N+L+V+H V+R +LA+ L +
Sbjct: 118 NAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIRIILAHVLGVDWRNPQWYS 172
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 102 bits (257), Expect = 5e-26
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 21/189 (11%)
Query: 129 HKHEGHIQARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGK 188
H H H R N++ H + + + + + LSERG ++ +
Sbjct: 5 HHHHHHSSGRE-----NLYFQGMHALYITHPQVKIDP-AVPVPEWGLSERGAERAREASR 58
Query: 189 FIAQQDIPGLRIWTSWLKRTIQTVA----TCPAPQERWKALNEIDAGICEEMTYEQIAEK 244
+ + RI +S + I+T T A E +A++E D + + +
Sbjct: 59 LPWAKAL--RRIVSSAETKAIETAHMLAETSGAAIEIIEAMHENDRSATGFLPPPEFEKA 116
Query: 245 YPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMEL----ERQGNVLVVSHQAVLRCLL 300
F+ + + E D AR+ + + + + + V H V L
Sbjct: 117 ADWFFAHPE-----ESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGGVGTLLK 171
Query: 301 AYFLDKSAD 309
+ +
Sbjct: 172 CHIEGRGIS 180
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 101 bits (253), Expect = 4e-25
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 31/188 (16%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
T+Y+TRHG++ N G DS L E+G + LG + DI + ++S R I
Sbjct: 15 TLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK--DIHFMNAYSSDSGRAI 72
Query: 210 QT-------VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDF---SARDCAKFTY 259
+T E+ K L E++ GI E + + + S + KF+
Sbjct: 73 ETANLVLKYSEQSKLKLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSI 132
Query: 260 R-----------YPRGESYEDLVARLEPVI------MELERQGNVLVVSHQAVLRCLLAY 302
+ + E +E R++ I + GNVLVV H ++ L+
Sbjct: 133 QEVIDLIRAADPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHGLLITTLIEM 192
Query: 303 FLDKSADE 310
Sbjct: 193 LDSSKTKL 200
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 96.7 bits (241), Expect = 3e-23
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 29/203 (14%)
Query: 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGL-----RIWTS 203
+ RHG++E + G G D L+ G+ G+ + + + I+TS
Sbjct: 6 PRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTS 65
Query: 204 WLKRTIQT----------VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFS--A 251
R QT L E + G E M +I E
Sbjct: 66 PRLRARQTVDLVLKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKE 125
Query: 252 RDCAKFTYRYPRGESYEDLVARLEPVI----------MELERQGNVLVVSHQAVLRCLLA 301
R + GE+ + + RL I R +++V +H LR A
Sbjct: 126 RPWNIWRDGCENGETTQQIGLRLSRAIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAA 185
Query: 302 YFLDKSADELPYLQVPLHTIIKL 324
+ + + +
Sbjct: 186 IWFGLGVQKKCETIEEIQNVKSY 208
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 87.9 bits (218), Expect = 2e-20
Identities = 26/180 (14%), Positives = 48/180 (26%), Gaps = 34/180 (18%)
Query: 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQ--QDIPGLRIWTSWLKRT 208
+ I L RHG+ E + L++ G + GK + + I+ S + R
Sbjct: 22 KHIILVRHGQYERRYKDDE-NSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRA 80
Query: 209 IQTVAT-----CPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPR 263
+T A LNE + + + +
Sbjct: 81 KETANIISKYFPDANLINDPNLNEGTPYLPDPLPR--------------------HSKFD 120
Query: 264 GESYEDLVARLEPVIMEL------ERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
+ ++ R+ + LV+ H V+R L L
Sbjct: 121 AQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRALQIPLFAWLRFSSY 180
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 88.6 bits (219), Expect = 2e-20
Identities = 31/253 (12%), Positives = 66/253 (26%), Gaps = 58/253 (22%)
Query: 150 PRTIYLTRHGESEHNL-----------------------------QGIIGG--DSSLSER 178
R ++ RHGE G G D+ L+
Sbjct: 4 RRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRL 63
Query: 179 GQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQT-VATCPAPQERWKALNEIDAGICEEMT 237
G +Q +G+ + + ++ S R ++T + +++ G+ E
Sbjct: 64 GWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKN 123
Query: 238 Y------------EQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQ- 284
+ E D + + + E+ ++ R E +
Sbjct: 124 WHMPKGIDFMTPIELCKAGLNVDMTYK---PYVEMDASAETMDEFFKRGEVAMQAAVNDT 180
Query: 285 ----GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCKME-----M 335
GNV+ + H L ++ D + + P M +
Sbjct: 181 EKDGGNVIFIGHAITLDQMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKPWDV 240
Query: 336 IKLPIDAVDTHRP 348
+ P +
Sbjct: 241 VSPPCPPS-INSS 252
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 86.3 bits (213), Expect = 2e-19
Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 51/213 (23%)
Query: 150 PRTIYLTRHGESEHNL-------------------------------QGIIGG--DSSLS 176
R I + RHGE + GI D LS
Sbjct: 9 RRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLS 68
Query: 177 ERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQT-VATCPAPQERWKALNEIDAGIC-- 233
G ++ G+ + + ++ S R +QT + K ++ GI
Sbjct: 69 SCGIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEW 128
Query: 234 ----------EEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMEL-- 281
+T E++ E + A ESY+ V R + ++
Sbjct: 129 MKWEASKATLTFLTLEELKEANFNVDLDYRPALPRCSLMPAESYDQYVERCAVSMGQIIN 188
Query: 282 ---ERQGNVLVVSHQAVLRCLLAYFLDKSADEL 311
+ G L+VSH + L L E
Sbjct: 189 TCPQDMGITLIVSHSSALDSCTRPLLGLPPREC 221
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 82.5 bits (204), Expect = 3e-18
Identities = 46/216 (21%), Positives = 69/216 (31%), Gaps = 57/216 (26%)
Query: 152 TIYLTRHGESEHNLQGIIGG---DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
+ + RHGE+ N + II G D LSE G + A G F+ ++ ++S L RT
Sbjct: 10 ALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN--NVKFTHAFSSDLMRT 67
Query: 209 IQTVATC--------PAPQERWKALNEIDAGICEEMTYEQIAEKYP-------------- 246
QT+ + L E G+ E ++
Sbjct: 68 KQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPPGG 127
Query: 247 ---DDFSAR----------------DCAKFTYRYPRGESYEDLVARLEP----VIMELER 283
D R D + + E +A + P ++
Sbjct: 128 ETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNS 187
Query: 284 QG-------NVLVVSHQAVLRCLLAYFLDKSADELP 312
+VLVVSH A +R L YFL LP
Sbjct: 188 DSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLP 223
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 79.5 bits (196), Expect = 1e-17
Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
R I+L RH + ++ G + D +L+ G+ ++ G +A + +I S + R I+
Sbjct: 11 RHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIE 68
Query: 211 TVATCPAPQERWKALNEIDAGICEEMTYEQ---IAEKYPDDFSARDCAKFTYRYPRGESY 267
T + + E E ++ P+ + ++
Sbjct: 69 TTD--IISRHLPGVCKVSTDLLREGAPIEPDPPVSHWKPEAVQYYEDGA-----RIEAAF 121
Query: 268 EDLVARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
+ + R + E + + H V+R ++ L + L +
Sbjct: 122 RNYIHRADA---RQEEDSYEIFICHANVIRYIVCRALQFPPEGWLRLSLN 168
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 74.7 bits (183), Expect = 2e-15
Identities = 32/213 (15%), Positives = 67/213 (31%), Gaps = 55/213 (25%)
Query: 151 RTIYLTRHGE---------------------------SEHNLQGIIGG------DSSLSE 177
R +++ RHGE H+L GG D+ ++
Sbjct: 1 RCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITV 60
Query: 178 RGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQT---VATCPAPQERWKALNEIDAGICE 234
G + ++ +G+ + + + ++ S R +QT + K ++ G+ E
Sbjct: 61 FGCMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIR--VEPGLFE 118
Query: 235 ------------EMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMEL- 281
+ ++A + + ESY+ + R V E+
Sbjct: 119 WTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEII 178
Query: 282 ----ERQGNVLVVSHQAVLRCLLAYFLDKSADE 310
+ N+L+V+H + L S
Sbjct: 179 SECKSKGNNILIVAHASSLEACTCQLQGLSPQN 211
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 62.1 bits (152), Expect = 2e-11
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 144 MNIHIVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIW 201
M P + LTRHGESE N + G D +LSE G ++ G+ + + +
Sbjct: 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAF 60
Query: 202 TSWLKRTIQTVATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDC 254
TS L+R +T + + LNE G + + + +K+ +
Sbjct: 61 TSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAE------ 114
Query: 255 AKF-TYR--Y----PRGESYEDLVARLEP----VIMELERQG-NVLVVSHQAVLRCLLAY 302
+ +R Y P GES +D R+ P I+ +G VL+ +H LR L+
Sbjct: 115 -QVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMD 173
Query: 303 FLDKSADELPYLQVP 317
+ D++ ++
Sbjct: 174 LEGLTGDQIVKRELA 188
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 59.8 bits (146), Expect = 1e-10
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 39/217 (17%)
Query: 140 VYYLMNIHIVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPG 197
+ + + H+ T+ L RHGES N + G D LSE+G+ + A GK++ +++
Sbjct: 1 MAHHHHHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKF 60
Query: 198 LRIWTSWLKRTIQTVATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY----- 245
++TS LKR I T P + LNE G + + + A+KY
Sbjct: 61 DVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQV 120
Query: 246 ----------PDDFSARD--CAKFTYRY--------PRGESYEDLVARLEP----VIM-E 280
P D Y P E +D V R+ P I +
Sbjct: 121 KIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVERVLPFWFDHIAPD 180
Query: 281 LERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
+ V+V +H LR L+ + + S ++ L +P
Sbjct: 181 ILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNIP 217
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 58.7 bits (143), Expect = 4e-10
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGES+ N + G D LSE+G ++A GK + ++ +TS LKR I T+
Sbjct: 7 LVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTL 66
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY---------------PDDFS 250
P E+ LNE G + + + AEKY P + +
Sbjct: 67 WNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELT 126
Query: 251 ARD--CAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSHQAV 295
D RY P ES + R+ P I+ ++ V++ +H
Sbjct: 127 KDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNS 186
Query: 296 LRCLLAYFLDKSADELPYLQVP 317
LR L+ Y + S +E+ L +P
Sbjct: 187 LRALVKYLDNMSEEEILELNIP 208
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 58.7 bits (143), Expect = 4e-10
Identities = 51/207 (24%), Positives = 80/207 (38%), Gaps = 40/207 (19%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
P+ + L RHG+SE N + + G D LS +GQ + G+ + ++ + ++TS L R
Sbjct: 1 PKLV-LVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSR 59
Query: 208 TIQTVATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY--------------- 245
IQT P R LNE G + + +K+
Sbjct: 60 AIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVP 119
Query: 246 PDDFSARD--CAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNVLVV 290
P A K RY P ES ++ RL P VI +L V++
Sbjct: 120 PPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIA 179
Query: 291 SHQAVLRCLLAYFLDKSADELPYLQVP 317
+H LR L+ + S ++ L +P
Sbjct: 180 AHGNSLRGLVKHLEGISDADIAKLNIP 206
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 57.5 bits (140), Expect = 1e-09
Identities = 48/202 (23%), Positives = 72/202 (35%), Gaps = 39/202 (19%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGES N + G D L+E+G ++ G+ + + +TS LKR I+T+
Sbjct: 14 LIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTL 73
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY-----------------PDD 248
P LNE G + + A KY +
Sbjct: 74 WHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALE 133
Query: 249 FSARDCAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSHQAV 295
RY P E +D VAR+ P I ++ VL+ +H
Sbjct: 134 PGDERAPYADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNS 193
Query: 296 LRCLLAYFLDKSADELPYLQVP 317
LR L+ Y S ++ L +P
Sbjct: 194 LRALIKYLDGISDADIVGLNIP 215
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 57.6 bits (140), Expect = 1e-09
Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 39/228 (17%)
Query: 129 HKHEGHIQARIVYYLMNIHIVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQAL 186
H H G ++A+ + + L RHGESE N + + G D LS++G +
Sbjct: 6 HHHMGTLEAQTQGPGSMLGDFMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEA 65
Query: 187 GKFIAQQDIPGLRIWTSWLKRTIQTVATCPA-------PQERWKALNEIDAGICEEMTYE 239
G + Q+ ++S L R T+ ++ LNE G + +
Sbjct: 66 GLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKS 125
Query: 240 QIAEKY---------------PDDFSARD--CAKFTYRY--------PRGESYEDLVARL 274
+ A KY P D RY P E +D VAR+
Sbjct: 126 ETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVARV 185
Query: 275 EP----VIM-ELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
P I E+ V+V +H LR L+ YF + S +++ L +P
Sbjct: 186 IPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIP 233
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 57.2 bits (139), Expect = 2e-09
Identities = 51/205 (24%), Positives = 77/205 (37%), Gaps = 39/205 (19%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
+ L RHGESE N + G D SLSE+G + G+ + ++ ++TS LKR I
Sbjct: 22 KLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAI 81
Query: 210 QTVATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY---------------PD 247
T T P LNE G + + + A K+ P
Sbjct: 82 MTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPP 141
Query: 248 DFSARD--CAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSH 292
D Y P E +D V R++P VI + +VLV +H
Sbjct: 142 VLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAH 201
Query: 293 QAVLRCLLAYFLDKSADELPYLQVP 317
LR LL + +++ + +P
Sbjct: 202 GNSLRALLYLLEGMTPEQILEVNIP 226
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 56.8 bits (138), Expect = 2e-09
Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 41/204 (20%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGES NL+ G D+ LS G ++ G+ + +TS KR I+T+
Sbjct: 8 LIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTL 67
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY-------------------- 245
T P R LNE G + + A K+
Sbjct: 68 WTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPME 127
Query: 246 -PDDFSARDCAKFTYRY------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSHQ 293
F + Y P ES +D +AR P I+ +++ VL+ +H
Sbjct: 128 PDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHG 187
Query: 294 AVLRCLLAYFLDKSADELPYLQVP 317
LR ++ + S + + L +P
Sbjct: 188 NSLRGIVKHLEGLSEEAIMELNLP 211
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 56.8 bits (138), Expect = 2e-09
Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGES+ N + + G D L+++G+ + G+ +A+ ++ ++TS L+R I T
Sbjct: 32 LLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTA 91
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY---------------PDDFS 250
P R LNE G + + +Y P
Sbjct: 92 HLALDTADWLWIPVRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIE 151
Query: 251 ARD--CAKFTYRY------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSHQAVLR 297
RY P E D+V R P VI+ +L VL+V+H LR
Sbjct: 152 KGSEFSQDADPRYTDIGGGPLTECLADVVTRFLPYFTDVIVPDLRTGRTVLIVAHGNSLR 211
Query: 298 CLLAYFLDKSADELPYLQVP 317
L+ + + S DE+ L VP
Sbjct: 212 ALVKHLDEMSDDEVVGLNVP 231
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 56.8 bits (138), Expect = 2e-09
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 37/200 (18%)
Query: 155 LTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
L RHGES+ N + G D L+++GQ + G+ IA+ D+ ++TS L+R I T
Sbjct: 9 LLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTA 68
Query: 213 ATCPA-------PQERWKALNEIDAGICEEMTYEQIAEKY-----------------PDD 248
P R LNE G + + + +Y P +
Sbjct: 69 HLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIE 128
Query: 249 FSARDCAKFTYRY------PRGESYEDLVARLEP----VIM-ELERQGNVLVVSHQAVLR 297
++ RY P E D+VAR P VI+ +L VL+V+H LR
Sbjct: 129 RGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLR 188
Query: 298 CLLAYFLDKSADELPYLQVP 317
L+ + S DE+ L +P
Sbjct: 189 ALVKHLDQMSDDEIVGLNIP 208
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 54.9 bits (133), Expect = 1e-08
Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 45/210 (21%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
+ + RHGE N + D L+ G ++ GK + + ++TS L R+I
Sbjct: 5 KLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSI 64
Query: 210 QTVATCPA-------PQER-WKALNEIDAGICEEMTYEQIAEKY---------------- 245
T P E W+ LNE G + EQ+A +
Sbjct: 65 HTAWLILEELGQEWVPVESSWR-LNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTP 123
Query: 246 -----PDDFSARDCAKFTYRY--------PRGESYEDLVARLEP----VIM-ELERQGNV 287
+ Y+ PR ES +D++ RL P I E+ R +
Sbjct: 124 PPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTI 183
Query: 288 LVVSHQAVLRCLLAYFLDKSADELPYLQVP 317
L+ +H R LL + S +++ + +P
Sbjct: 184 LISAHGNSSRALLKHLEGISDEDIINITLP 213
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG, function; 2.00A {Nostoc SP}
Length = 172
Score = 51.5 bits (124), Expect = 4e-08
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 36/160 (22%)
Query: 153 IYLTRHGESEHNLQGIIGGDSS--LSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+YL RHG +E G D L++ G+ ++ + + + I TS L R Q
Sbjct: 3 LYLIRHGIAEAQKTG--IKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQ 60
Query: 211 TVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDL 270
T + L +G+ + E+ P+ + +
Sbjct: 61 T----------AEILLA--SGLSCQ--LEESNHLAPNG-----------------NIFNW 89
Query: 271 VARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADE 310
+ + +V H+ L L A +
Sbjct: 90 LDYWL-KPKNFPENAQIAIVGHEPCLSNWTEILLWGEAKD 128
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 49.2 bits (118), Expect = 2e-07
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 42/145 (28%)
Query: 153 IYLTRHGESEHNLQGIIGGDS----SLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
+++ RHG++ + S L+ G S+ + ++ Q + R+ S R
Sbjct: 3 VFIMRHGDAALD------AASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRA 56
Query: 209 IQTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYE 268
Q T E++ + SA + T
Sbjct: 57 EQ--------------------------TLEEVGDCLNLPSSAEVLPELTP----CGDVG 86
Query: 269 DLVARLEPVIMELERQGNVLVVSHQ 293
+ A L+ + E +VLV+SH
Sbjct: 87 LVSAYLQALT--NEGVASVLVISHL 109
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 49.3 bits (118), Expect = 2e-07
Identities = 22/161 (13%), Positives = 42/161 (26%), Gaps = 35/161 (21%)
Query: 150 PRTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
P +YL RH ++ G D L+E G ++ + A + I +S R
Sbjct: 8 PTRVYLLRHAKAAWAAPGERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAARCR 67
Query: 210 QTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYED 269
Q T + + + + Y
Sbjct: 68 Q--------------------------TTQAWQRAFNEGIDIVYIDEM---------YNA 92
Query: 270 LVARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADE 310
+I +V++V H + L + +
Sbjct: 93 RSETYLSLIAAQTEVQSVMLVGHNPTMEATLEAMIGEDLLH 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 3e-07
Identities = 51/341 (14%), Positives = 102/341 (29%), Gaps = 90/341 (26%)
Query: 27 VFDATNSTIDRR---KMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDM 83
V D S + + +I +LF ++ + Q +E +V +Y
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVE-EVLRINY--- 91
Query: 84 NREAALQDFLQRIMHYEERYEALNEES-EAALSFMRIYNTGE---KVLVHKHEGHIQARI 139
FL + E+R ++ R+YN + K V + + +++ R
Sbjct: 92 -------KFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 140 VYYLMNIHIVPRTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLR 199
L+ + + G + G G + ++ + Q + +
Sbjct: 143 A--LLELRPAK---NVLIDG-----VLGS--GKTWVA------LDVCLSYKVQCKMDF-K 183
Query: 200 IWTSWLKRTIQTVATCPAPQERWKALN----EIDAGICE--------EMTYEQIAEK--- 244
I+ WL + C +P+ + L +ID ++ I +
Sbjct: 184 IF--WL-----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 245 ------YP------DDFSARDCAK-FTYRYP-----RGESYEDLVARLEPVIMELERQGN 286
Y + F R + D ++ + L+
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 287 VLVVSHQAVLRCLLAYFLDKSADELPYLQV----PLH-TII 322
L + V LL +LD +LP +V P +II
Sbjct: 297 TL--TPDEVKS-LLLKYLDCRPQDLP-REVLTTNPRRLSII 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 58/357 (16%), Positives = 107/357 (29%), Gaps = 136/357 (38%)
Query: 76 NSPDY----QDMNR--EAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTG---EKV 126
N+ DY +D+ + + D ++ E L+E L +++ G +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSA------ETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 127 LVHKHEGHIQARIVYYLMNIHI-VPRTIYLT--------------RHGESEHNLQGIIG- 170
L E YL++I I P I + GE L+G G
Sbjct: 219 L----ENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 171 ------------GDS--SLSERGQLYSQALGKFI----AQQDIPGLRIWTSWLKRTIQTV 212
DS S + L F + P + S L+ +++
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 213 ATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGE------- 265
P+P L+ +T EQ+ + Y + ++ P G+
Sbjct: 332 EGVPSPM-----LS------ISNLTQEQV-QDYVNKTNS--------HLPAGKQVEISLV 371
Query: 266 -SYEDLV-----ARLEPVIMELER--------QGNV------LVVSHQAVLRCLLAYFLD 305
++LV L + + L + Q + L S++ FL
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---------FLP 422
Query: 306 KSADELPYLQVPLHTIIKLTPVAYGCKMEMIKLPIDAVDTHRPKPKV---GSELVIP 359
++ P H+ + L P + D ++ K V ++ IP
Sbjct: 423 VAS--------PFHSHL-LVPAS------------DLINKDLVKNNVSFNAKDIQIP 458
Score = 36.2 bits (83), Expect = 0.020
Identities = 42/214 (19%), Positives = 59/214 (27%), Gaps = 83/214 (38%)
Query: 151 RTIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
R + L+ HG EH L + + FIA Q L+
Sbjct: 7 RPLTLS-HGSLEHVL--------LVPT--ASF------FIASQ-----------LQEQFN 38
Query: 211 TVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDL 270
P P E + A +E P + +L
Sbjct: 39 --KILPEPTEGFAADDE----------------------------------P--TTPAEL 60
Query: 271 VAR-LEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQV-PLHTII----KL 324
V + L V +E V VL L F E YL+ +H + +
Sbjct: 61 VGKFLGYVSSLVEPSK---VGQFDQVLNLCLTEF------ENCYLEGNDIHALAAKLLQE 111
Query: 325 TPVAYGCKMEMIKLPIDA-VDTHRPKPKVG-SEL 356
E+IK I A + RP K S L
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Score = 31.9 bits (72), Expect = 0.36
Identities = 53/355 (14%), Positives = 100/355 (28%), Gaps = 148/355 (41%)
Query: 49 MG---YKLFFV-ESVCD--DPSIIEQ---NIMEVKVNSP-----------------DYQD 82
MG YK + V + D + +I+++ +N+P +Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 83 MNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQARIVYY 142
M E + L+ E+ ++ +NE S + +F EK L+ + Q +
Sbjct: 1691 MIFETIVDGKLKT----EKIFKEINEHSTS-YTF-----RSEKGLLSATQ-FTQPALT-- 1737
Query: 143 LMNIHIVPRTIYLTRHGESEHNLQGIIGGDS-----SLSERGQLYSQALGKFIAQQDIPG 197
LM + +S+ G+I D+ SL E Y+ AL
Sbjct: 1738 LMEKAAF-EDL------KSK----GLIPADATFAGHSLGE----YA-AL----------- 1770
Query: 198 LRIWTSWLKRTIQTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKF 257
+ A + S +
Sbjct: 1771 --------------ASL---------------ADV----------------MSIESLVEV 1785
Query: 258 TYRYPRGESYEDLVARLE----PVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADEL-- 311
+ RG + + V R E M G V Q L+ ++ ++ +
Sbjct: 1786 VFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 312 -----PYLQVPLHTII--------KLTPVAYGCKMEMIKL-------PIDAVDTH 346
Q + +T V K++ I + ++ V+ H
Sbjct: 1844 VNYNVENQQY----VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 28.1 bits (62), Expect = 6.0
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 8 AIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLF 54
A+D +T+V+ +++ ID ++ + ++++ LF
Sbjct: 1861 ALDTVTNVLNFIKLQK-----------IDIIELQKSLSLEEVEGHLF 1896
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 33.0 bits (76), Expect = 0.15
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 74 KVNSPDYQDM-NREAALQD------FLQR----------IMHYEERYEALNEESEAALSF 116
+N +++ N E ++D F + I Y +E ++ +++ SF
Sbjct: 470 YLN-DSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSF 528
Query: 117 MRIYNTGEKVLV 128
+ YN + +
Sbjct: 529 TKKYN-NKTLFA 539
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 0.48
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 2 RIRTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCD 61
I T D ++ ++ V + TN +RR + G+K+
Sbjct: 58 GIVTGMQFDTAKSILYGGDSVKGV-IISDTNLNPERRLAWETF-AKEYGWKVEHKVFDVP 115
Query: 62 DPSIIEQN 69
++++N
Sbjct: 116 WTELVKRN 123
>1vyi_A RNA polymerase alpha subunit; transferase, replication,
transcription, RNA-directed RNA polymerase,
phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP:
d.293.1.1
Length = 112
Score = 29.7 bits (66), Expect = 0.62
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 222 WKALNEIDAGICEEMTYEQIAEKYPD--DFSARDCAKFTYRYPRGESYEDLVARLEPVIM 279
W A NE D E QIAE + F +R F Y ++E L L+ ++
Sbjct: 1 WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLY------NFEQLKMNLDDIVK 54
Query: 280 ELERQGNVLVVSHQAV---LRCLLAY 302
E + V ++H LRC+L +
Sbjct: 55 EAKNVPGVTRLAHDGSKIPLRCVLGW 80
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 31.0 bits (71), Expect = 0.65
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 74 KVNSPDYQDMNREAALQD------FLQRIM---HYEE-----RYEALNEESEAALSFMRI 119
+N P+Y ++N E + ++++ H+ Y+ LN + ++ R
Sbjct: 453 HIN-PNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVYGAYQDLNPQDNTVYAYTRT 511
Query: 120 YNTGEKVLV 128
E+ LV
Sbjct: 512 LG-NERYLV 519
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.4 bits (68), Expect = 0.91
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 2 RIRTQCAIDALTDVIAWLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCD 61
I T D ++ ++ V + TN +RR + G+K+
Sbjct: 58 GIVTGMQFDTAKSILYGGDSVKGV-IISDTNLNPERRLAWETF-AKEYGWKVEHKVFDVP 115
Query: 62 DPSIIEQNIM 71
++++N
Sbjct: 116 WTELVKRNSK 125
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 30.2 bits (69), Expect = 1.3
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 74 KVNSPDYQDMNREAALQD------FLQRIM---HYEE-----RYEALNEESEAALSFMRI 119
KVN +Y+ +N EA +D F ++++ E Y+ L E + ++ R
Sbjct: 436 KVN-ENYRTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTYDLLLENHPSIYAYTRT 494
Query: 120 YNTGEKVLV 128
++ LV
Sbjct: 495 LG-RDRALV 502
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 29.8 bits (68), Expect = 1.4
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 74 KVNSPDYQDMNREAALQD------FLQRIM---HYEE-----RYEALNEESEAALSFMRI 119
KVN P+Y ++N + D F + ++ H Y ++ + ++ R
Sbjct: 439 KVN-PNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSNADVYAYTRS 497
Query: 120 YNTGEKVLV 128
+ GE LV
Sbjct: 498 QD-GETYLV 505
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 29.8 bits (68), Expect = 1.6
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 74 KVNSPDYQDMNREAALQD------FLQRIM---HYEE-----RYEALNEESEAALSFMRI 119
VN P+Y+++N + A+Q+ + ++++ E Y+ + E + + +++R
Sbjct: 440 TVN-PNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRT 498
Query: 120 YNTGEKVLV 128
Y EK+LV
Sbjct: 499 YG-VEKLLV 506
>3lho_A Putative hydrolase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}
Length = 267
Score = 28.0 bits (62), Expect = 4.1
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 41 IHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYE 100
H D K+F E + ++ S Q + ++ D + + +
Sbjct: 82 KHFEHPDPKQPKVFISELLVEEFSPEVQKSIHGLIDQVDIAATTADNFIYSGRHWDVDKA 141
Query: 101 ERYEALNEESE--AALSFMRIYNTGEKVLVHKHEG 133
Y+AL ESE A ++ + V ++
Sbjct: 142 T-YQALLAESEYAAWVAALGYRANHFTVSINDLPE 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.2
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 17/39 (43%)
Query: 172 DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+SL +LY A P L I K T++
Sbjct: 26 QASL----KLY--------ADDSAPALAI-----KATME 47
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure,
ATP binding, CHOL biosynthesis, structural genomics,
PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5
d.58.26.2
Length = 416
Score = 28.3 bits (62), Expect = 4.5
Identities = 25/203 (12%), Positives = 44/203 (21%), Gaps = 27/203 (13%)
Query: 18 WLETGGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESVCDDPSIIEQNIMEVKVNS 77
W + V V + + + V +K E+ V
Sbjct: 209 WPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFK--------------ERIEHVVPKRF 254
Query: 78 PDYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQA 137
+ E F + M + A +S + +M + H
Sbjct: 255 EVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGE 314
Query: 138 RIVYYLM----NIHIVPRTIYLTRHGES-----EHNLQGIIGGDSSLSERGQLYSQALGK 188
IV Y N + YL + + G D + +
Sbjct: 315 TIVAYTFDAGPNAVL----YYLAENESKLFAFIYKLFGSVPGWDKKFTTEQLEAFNHQFE 370
Query: 189 FIAQQDIPGLRIWTSWLKRTIQT 211
+ R I T
Sbjct: 371 SSNFTARELDLELQKDVARVILT 393
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 27.7 bits (61), Expect = 5.7
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 94 QRIMHYEERYEALNEESEAALSFMRIYNTGEKVLVHKHEGHIQARIVYYLMNI--HIVPR 151
+RI + +E + R +N+ ++L+ + ++ + IV
Sbjct: 180 ERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239
Query: 152 TIYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGK 188
R G +L+ER Q ++ L
Sbjct: 240 LTSHFRSEYI---------GRGALAERQQKLAKHLAD 267
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 28.0 bits (61), Expect = 6.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 256 KFTYRYPRGESYEDLVARLEPVIMELERQGN-----VLVVSHQAVLRCLLAYFLDKSADE 310
+F P YEDL+ ++E + N L+ Q V+ + +Y K DE
Sbjct: 230 EFLQNNPD-AVYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKDDDE 288
Query: 311 LPYLQVP-LHTIIKLTPVAYGCK 332
P P + +I L V+ G +
Sbjct: 289 TPIFLSPCMRALIHLAGVSLGQR 311
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif,
RNA-modifying enzyme, lyase; 1.50A {Escherichia coli}
SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Length = 264
Score = 27.0 bits (61), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 242 AEKYPDDFSARDCAKF-TYRY 261
+ PDDF AR A YRY
Sbjct: 94 VKTVPDDFHARFSATARRYRY 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,847,128
Number of extensions: 362894
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 72
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)