RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9912
(366 letters)
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 181 bits (460), Expect = 3e-56
Identities = 130/199 (65%), Positives = 162/199 (81%)
Query: 153 IYLTRHGESEHNLQGIIGGDSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQTV 212
IYL RHGESE NL+G IGGD LS RG+ +S+ L +FI+ Q+I L+++TS +KRTIQT
Sbjct: 2 IYLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTA 61
Query: 213 ATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVA 272
P E++K LNEIDAG+CEEMTYE+I + YP +F+ RD K+ YRYP+GESYEDLV
Sbjct: 62 EALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQ 121
Query: 273 RLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLTPVAYGCK 332
RLEPVIMELERQ NVLV+ HQAV+RCLLAYFLDK+A+ELPYL+ PLHT++KLTPVAYGCK
Sbjct: 122 RLEPVIMELERQENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCK 181
Query: 333 MEMIKLPIDAVDTHRPKPK 351
+E I L + AV+THR +P+
Sbjct: 182 VESIFLNVAAVNTHRDRPQ 200
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 112 bits (279), Expect = 7e-30
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 14/188 (7%)
Query: 144 MNIHIVPRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIW 201
M P + LTRHGESE N + G D +LSE G ++ G+ + + +
Sbjct: 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAF 60
Query: 202 TSWLKRTIQTVATCPAPQERW-------KALNEIDAGICEEMTYEQIAEKYPDDFSARDC 254
TS L+R +T + LNE G + + + +K+ +
Sbjct: 61 TSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWR 120
Query: 255 AKFTYRYPRGESYEDLVARLEP-----VIMELERQGNVLVVSHQAVLRCLLAYFLDKSAD 309
+ P GES +D R+ P ++ + + VL+ +H LR L+ + D
Sbjct: 121 RSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGD 180
Query: 310 ELPYLQVP 317
++ ++
Sbjct: 181 QIVKRELA 188
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 107 bits (267), Expect = 4e-28
Identities = 77/152 (50%), Positives = 107/152 (70%), Gaps = 2/152 (1%)
Query: 1 MRIRTQCAIDALTDVIAWLET-GGEVAVFDATNSTIDRRKMIHEMVVDKMGYKLFFVESV 59
++IR QCA+ AL DV +L GG VAVFDATN+T +RR MI GYK FFVES+
Sbjct: 63 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQN-GYKTFFVESI 121
Query: 60 CDDPSIIEQNIMEVKVNSPDYQDMNREAALQDFLQRIMHYEERYEALNEESEAALSFMRI 119
C DP +I NI++VK+ SPDY + + + A +DF++RI YE YE+L+EE + LS+++I
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKI 181
Query: 120 YNTGEKVLVHKHEGHIQARIVYYLMNIHIVPR 151
+ G+ +V++ HIQ+RIVYYLMNIH+ PR
Sbjct: 182 MDVGQSYVVNRVADHIQSRIVYYLMNIHVTPR 213
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 104 bits (260), Expect = 8e-27
Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 39/212 (18%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTI 209
+ L RHGES+ N + G D LSE+G ++A GK + ++ +TS LKR I
Sbjct: 4 KLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAI 63
Query: 210 QT-------VATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSA----------- 251
T + P E+ LNE G + + + AEKY D+
Sbjct: 64 HTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPP 123
Query: 252 --------------RDCAKFTYRYPRGESYEDLVARLEPVIM-----ELERQGNVLVVSH 292
R P ES + R+ P ++ V++ +H
Sbjct: 124 ELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAH 183
Query: 293 QAVLRCLLAYFLDKSADELPYLQVPLHTIIKL 324
LR L+ Y + S +E+ L +P +
Sbjct: 184 GNSLRALVKYLDNMSEEEILELNIPTGVPLVY 215
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 100 bits (249), Expect = 3e-25
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 39/214 (18%)
Query: 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
T+ L RHGES N + G D LSE+G+ + A GK++ +++ ++TS LKR
Sbjct: 4 YTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRA 63
Query: 209 IQTVATCPAPQ-------ERWKALNEIDAGICEEMTYEQIAEKYPD-------------- 247
I T + LNE G + + + A+KY +
Sbjct: 64 ICTAWNVLKTADLLHVPVVKTWRLNERHYGSLQGLNKSETAKKYGEEQVKIWRRSYDIPP 123
Query: 248 -----------DFSARDCAKFTYRYPRGESYEDLVARLEPVIM-----ELERQGNVLVVS 291
+ P E +D V R+ P ++ V+V +
Sbjct: 124 PKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAA 183
Query: 292 HQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLT 325
H LR L+ + + S ++ L +P +
Sbjct: 184 HGNSLRGLVKHLDNLSEADVLELNIPTGVPLVYE 217
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 92.4 bits (228), Expect = 2e-22
Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 46/239 (19%)
Query: 151 RTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRT 208
++ L RHGES+ N + G D L+++GQ + G+ IA+ D+ ++TS L+R
Sbjct: 4 GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRA 63
Query: 209 IQTVATCPAPQE-------RWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRY 261
I T + R LNE G + + + +Y ++ +
Sbjct: 64 ITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPP 123
Query: 262 -----------------------PRGESYEDLVARLEPVIM-----ELERQGNVLVVSHQ 293
P E D+VAR P +L VL+V+H
Sbjct: 124 PPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHG 183
Query: 294 AVLRCLLAYFLDKSADELPYLQVPLHTII------KLTPVAYGCKM---EMIKLPIDAV 343
LR L+ + S DE+ L +P + + P+ G E AV
Sbjct: 184 NSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAV 242
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 89.3 bits (220), Expect = 1e-21
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 152 TIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRI--WTSWLKR 207
T+YLTRHGE++ N++ + G DS L+E+G+ + LGK + ++ + L+
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 208 TIQTVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESY 267
P + + L EI G E T+++I + P F A Y RGE +
Sbjct: 63 AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERF 122
Query: 268 EDLVARLEPVIMELERQ---GNVLVVSHQAVLRCLLAYFLDKSADELPYLQVPLHTII 322
D+ R + + + VL+V+H VL+ L+A F D D L T +
Sbjct: 123 CDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSV 180
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 87.0 bits (214), Expect = 2e-20
Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 40/215 (18%)
Query: 150 PRTIYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKR 207
P+ + L RHG+SE N + + G D LS +GQ + G+ + ++ + ++TS L R
Sbjct: 1 PK-LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSR 59
Query: 208 TIQTVATCPAPQER-------WKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYR 260
IQT +R LNE G + + +K+ ++ F
Sbjct: 60 AIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVP 119
Query: 261 -------------------------YPRGESYEDLVARLEPVIM-----ELERQGNVLVV 290
P ES ++ RL P +L V++
Sbjct: 120 PPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIA 179
Query: 291 SHQAVLRCLLAYFLDKSADELPYLQVPLHTIIKLT 325
+H LR L+ + S ++ L +P +
Sbjct: 180 AHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFE 214
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 87.0 bits (214), Expect = 3e-20
Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 43/208 (20%)
Query: 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
+ + RHGE N + D L+ G ++ GK + + ++TS L R+I
Sbjct: 4 LIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIH 63
Query: 211 TVATCPAPQ-------ERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYR--- 260
T E LNE G + EQ+A + ++ +
Sbjct: 64 TAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPP 123
Query: 261 --------------------------YPRGESYEDLVARLEPVIMEL-----ERQGNVLV 289
PR ES +D++ RL P E R +L+
Sbjct: 124 IEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILI 183
Query: 290 VSHQAVLRCLLAYFLDKSADELPYLQVP 317
+H R LL + S +++ + +P
Sbjct: 184 SAHGNSSRALLKHLEGISDEDIINITLP 211
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 68.6 bits (166), Expect = 2e-14
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 153 IYLTRHGESEHNLQGIIGG--DSSLSERGQLYSQALGKFIAQQDIPGLRIWTSWLKRTIQ 210
++L RHGE+ N +G + G D L+ G+ ++ L + ++S L R +
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSL-----PAFSSDLLRARR 57
Query: 211 TVATCPAPQERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDL 270
T + L EI G E +E + +Y + E +
Sbjct: 58 TAELAGFSPRLYPELREIHFGALEGALWETLDPRYKEALLRFQGFHPPGGESLSAFQERV 117
Query: 271 VARLEPVIMELERQGNVLVVSHQAVLRCLLAYFLDK---SADELPYLQVPLHTIIKLT 325
LE + ++ +H V+R +L + + P +++L
Sbjct: 118 FRFLE------GLKAPAVLFTHGGVVRAVLRALGEDGLVPPGSAVAVDWPRRVLVRLA 169
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 28.7 bits (64), Expect = 0.26
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 219 QERWKALNEIDAGICEEMTYEQIAEKYPDDFSARDCAKFTYRYP 262
Q WK L + G E ++Y+Q+A + +AR P
Sbjct: 6 QVLWKLLKVVKFG--EVISYQQLAALAGNPKAARAVGGAMRGNP 47
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies
virus, strain CVS-11 [TaxId: 11292]}
Length = 111
Score = 26.8 bits (59), Expect = 1.8
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 222 WKALNEIDAGICEEMTYEQIAEKYPD--DFSARDCAKFTYRYPRGESYEDLVARLEPVIM 279
W A NE D E QIAE + F +R F Y ++E L L+ ++
Sbjct: 1 WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLY------NFEQLKMNLDDIVK 54
Query: 280 ELERQGNVLVVSHQAV---LRCLLAY 302
E + V ++H LRC+L +
Sbjct: 55 EAKNVPGVTRLAHDGSKIPLRCVLGW 80
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
DNA-binding domain {Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.9 bits (57), Expect = 3.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 31 TNSTIDRRKMIHEMVVDKMGYKLFFVESVCD 61
TN+ R+ + E ++ M + +E VC
Sbjct: 83 TNTNTGRKCSMIEHIMQSMQFPAELIEKVCG 113
>d1tvla_ c.1.16.4 (A:) Putative monooxygenase YtnJ {Bacillus
subtilis [TaxId: 1423]}
Length = 430
Score = 26.8 bits (58), Expect = 5.0
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 237 TYEQIAEKYPDDFSARDCAKFTYRYPRGESYEDLVARLEPVIMELERQG 285
T E++A F+A F + + V E VI L+ +G
Sbjct: 364 TPERVASLIETWFNAEAADGFIVGSDIPGTLDAFV---EKVIPILQERG 409
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 26.7 bits (58), Expect = 5.9
Identities = 7/75 (9%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 13 TDVIAWLETGGEVAVFDATNSTID------RRKMIHEMV----VDKMGYKLFFVESVCDD 62
++ + V D + E++ V +G+ ++ V + +
Sbjct: 36 DWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSSDSQELLFSALVPAVGFSIYSVSQMPNR 95
Query: 63 PSIIEQNIMEVKVNS 77
+I+ + + +
Sbjct: 96 DLVIQNEYLRARFDP 110
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB
{Bordetella pertussis [TaxId: 520]}
Length = 68
Score = 24.2 bits (53), Expect = 7.8
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 262 PRGESYEDLVARLEPVIMELER 283
P + +E +A LE ++ +E
Sbjct: 3 PLPQDFETALAELESLVSAMEN 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,403,796
Number of extensions: 67471
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 24
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)