BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9913
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 161/317 (50%), Gaps = 56/317 (17%)
Query: 1 MQACEFASGKPGKSPEVPEVKTESQIRL--------MHESCKLARFVLDCIAEHIKVNMT 52
+Q ++A G S +K SQI+L M C+LAR VLD A IK +T
Sbjct: 24 IQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVT 83
Query: 53 TNELDVFAHELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVT 112
T E+D H I YPSPLNY +PKS CTSVN V CHGIPD RPL++GDIVNVD+T
Sbjct: 84 TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDIT 143
Query: 113 VYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQ 172
+Y NGYHGD + TF VGEVD + LV + L AI VKPG + +G+II+ A+
Sbjct: 144 LYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQA 203
Query: 173 NKLRVVPEILGHGIGSYFHGAPDIFH-TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGH 231
N VV GHGI FH AP++ H KN G M+ G +
Sbjct: 204 NGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHV------------------- 244
Query: 232 GIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTA 291
FTIEP++ G Q DGWT VT D R+A
Sbjct: 245 ----------------------------FTIEPMICEGGWQDETWPDGWTAVTRDGKRSA 276
Query: 292 QFEHTVLVTYDGYKVLT 308
QFEHT+LVT G ++LT
Sbjct: 277 QFEHTLLVTDTGCEILT 293
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 161/317 (50%), Gaps = 56/317 (17%)
Query: 1 MQACEFASGKPGKSPEVPEVKTESQIRL--------MHESCKLARFVLDCIAEHIKVNMT 52
+Q ++A G S +K SQI+L M C+LAR VLD A IK +T
Sbjct: 23 IQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVT 82
Query: 53 TNELDVFAHELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVT 112
T E+D H I YPSPLNY +PKS CTSVN V CHGIPD RPL++GDIVNVD+T
Sbjct: 83 TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDIT 142
Query: 113 VYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQ 172
+Y NGYHGD + TF VGEVD + LV + L AI VKPG + +G+II+ A+
Sbjct: 143 LYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQA 202
Query: 173 NKLRVVPEILGHGIGSYFHGAPDIFH-TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGH 231
N VV GHGI FH AP++ H KN G M+ G +
Sbjct: 203 NGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHV------------------- 243
Query: 232 GIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTA 291
FTIEP++ G Q DGWT VT D R+A
Sbjct: 244 ----------------------------FTIEPMICEGGWQDETWPDGWTAVTRDGKRSA 275
Query: 292 QFEHTVLVTYDGYKVLT 308
QFEHT+LVT G ++LT
Sbjct: 276 QFEHTLLVTDTGCEILT 292
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 161/317 (50%), Gaps = 56/317 (17%)
Query: 1 MQACEFASGKPGKSPEVPEVKTESQIRL--------MHESCKLARFVLDCIAEHIKVNMT 52
+Q ++A G S +K SQI+L M C+LAR VLD A IK +T
Sbjct: 48 IQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVT 107
Query: 53 TNELDVFAHELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVT 112
T E+D H I YPSPLNY +PKS CTSVN V CHGIPD RPL++GDIVNVD+T
Sbjct: 108 TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDIT 167
Query: 113 VYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQ 172
+Y NGYHGD + TF VGEVD + LV + L AI VKPG + +G+II+ A+
Sbjct: 168 LYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQA 227
Query: 173 NKLRVVPEILGHGIGSYFHGAPDIFH-TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGH 231
N VV GHGI FH AP++ H KN G M+ G +
Sbjct: 228 NGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHV------------------- 268
Query: 232 GIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTA 291
FTIEP++ G Q DGWT VT D R+A
Sbjct: 269 ----------------------------FTIEPMICEGGWQDETWPDGWTAVTRDGKRSA 300
Query: 292 QFEHTVLVTYDGYKVLT 308
QFEHT+LVT G ++LT
Sbjct: 301 QFEHTLLVTDTGCEILT 317
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 163/301 (54%), Gaps = 47/301 (15%)
Query: 9 GKPG-KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINN 67
GKP + P V+T I M + ++A L + + +TT+ELD AHE +++N
Sbjct: 32 GKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN 91
Query: 68 GAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFC 127
GAYPS L YKG+PKS CTS+N V CHGIPDS + DGDIVN+DVT Y+ G HGD +ATF
Sbjct: 92 GAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP 151
Query: 128 VGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
G+V + LV+ ++A AI+ VKPG S IG +IE+ A + VV + GHGIG
Sbjct: 152 AGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIG 211
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
+ FH + H D P +E +
Sbjct: 212 TTFHNGLVVLH--YDQPA-------VETI------------------------------- 231
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVL 307
M+PGMTFTIEP++ G + +DGWT+VT+D TAQFEHT+LVT G ++L
Sbjct: 232 ------MQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 285
Query: 308 T 308
T
Sbjct: 286 T 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 163/301 (54%), Gaps = 47/301 (15%)
Query: 9 GKPG-KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINN 67
GKP + P V+T I M + ++A L + + +TT+ELD AHE +++N
Sbjct: 35 GKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN 94
Query: 68 GAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFC 127
GAYPS L YKG+PKS CTS+N V CHGIPDS + DGDIVN+DVT Y+ G HGD +ATF
Sbjct: 95 GAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP 154
Query: 128 VGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
G+V + LV+ ++A AI+ VKPG S IG +IE+ A + VV + GHGIG
Sbjct: 155 AGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIG 214
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
+ FH + H D P +E +
Sbjct: 215 TTFHNGLVVLH--YDQPA-------VETI------------------------------- 234
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVL 307
M+PGMTFTIEP++ G + +DGWT+VT+D TAQFEHT+LVT G ++L
Sbjct: 235 ------MQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 288
Query: 308 T 308
T
Sbjct: 289 T 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 163/301 (54%), Gaps = 47/301 (15%)
Query: 9 GKPG-KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINN 67
GKP + P V+T I M + ++A L + + +TT+ELD AHE +++N
Sbjct: 29 GKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN 88
Query: 68 GAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFC 127
GAYPS L YKG+PKS CTS+N V CHGIPDS + DGDIVN+DVT Y+ G HGD +ATF
Sbjct: 89 GAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP 148
Query: 128 VGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
G+V + LV+ ++A AI+ VKPG S IG +IE+ A + VV + GHGIG
Sbjct: 149 AGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIG 208
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
+ FH + H D P +E +
Sbjct: 209 TTFHNGLVVLH--YDQPA-------VETI------------------------------- 228
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVL 307
M+PGMTFTIEP++ G + +DGWT+VT+D TAQFEHT+LVT G ++L
Sbjct: 229 ------MQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 282
Query: 308 T 308
T
Sbjct: 283 T 283
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 162/301 (53%), Gaps = 47/301 (15%)
Query: 9 GKPG-KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINN 67
GKP + P V+T I M + ++A L + + +TT+ELD AHE +++N
Sbjct: 35 GKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDN 94
Query: 68 GAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFC 127
GAYPS L YKG+PKS TS+N V CHGIPDS + DGDIVN+DVT Y+ G HGD +ATF
Sbjct: 95 GAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP 154
Query: 128 VGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
G+V + LV+ ++A AI+ VKPG S IG +IE+ A + VV + GHGIG
Sbjct: 155 AGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIG 214
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
+ FH + H D P +E +
Sbjct: 215 TTFHNGLVVLH--YDQPA-------VETI------------------------------- 234
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVL 307
M+PGMTFTIEP++ G + +DGWT+VT+D TAQFEHT+LVT G ++L
Sbjct: 235 ------MQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEIL 288
Query: 308 T 308
T
Sbjct: 289 T 289
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 158/291 (54%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
++ TE M + KLA LD I +H+K N+TTN L+ H I ++ A P+PLNYKG
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+PKSICTS+N+V CHGIP+ +PL++GDIVN+DVTV L+G++GD S + VG+V K L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+ V A+ I VV+PG IG I++ A+++ VV + GHGIG FH P I +
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
+ +N ++ GM
Sbjct: 187 ----------------------------------------------YGRNGTGLTLKEGM 200
Query: 259 TFTIEPVLTNGNGQVTMLE-DGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FT+EP++ GN + + DGWT+ T D S +AQFEHT+ VT DG+++ T
Sbjct: 201 FFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 251
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 158/291 (54%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
++ TE M + KLA LD I +H+K N+TTN L+ H I ++ A P+PLNYKG
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+PKSICTS+N+V CHGIP+ +PL++GDIVN+DVTV L+G++GD S + VG+V K L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+ V A+ I VV+PG IG I++ A+++ VV + GHGIG FH P I +
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
+ +N ++ GM
Sbjct: 187 ----------------------------------------------YGRNGTGLTLKEGM 200
Query: 259 TFTIEPVLTNGNGQVTMLE-DGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FT+EP++ GN + + DGWT+ T D S +AQFEHT+ VT DG+++ T
Sbjct: 201 FFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 251
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 148/289 (51%), Gaps = 48/289 (16%)
Query: 21 KTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYP 80
K ++I+ + C+L+R VLD K +TT+ELD HE + YPSPLNY G+P
Sbjct: 64 KKTAEIQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFP 123
Query: 81 KSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVN 140
KS+CTSVN V CHGIPDSR LE+GDI+N+DV+ YLNG+HGD + T +G D LV+
Sbjct: 124 KSVCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVH 183
Query: 141 VAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTK 200
A + L A I VVKP + +G IE A Q + VV GHG+G FH +P + H
Sbjct: 184 AAYECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYA 243
Query: 201 NDYP-GKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
N+ G M PG +
Sbjct: 244 NNKSLGMMRPGHV----------------------------------------------- 256
Query: 260 FTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FTIEP++ G Q D WT T+D R+AQFEHT++VT G ++ T
Sbjct: 257 FTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 147/293 (50%), Gaps = 51/293 (17%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
V E +I+ + E+C L R LD + +TT+E+D HE II N AYPS LNY +
Sbjct: 103 VNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKF 162
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVD---ASGK 136
PKS CTSVN + CHGIPD RPL+ GDI+N+D++V+ G H D + T+ VG+++ GK
Sbjct: 163 PKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGK 222
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDI 196
LV +L AI KPG ++ IG++I+ + VV GHG+G FH P +
Sbjct: 223 ELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTV 282
Query: 197 FH-TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKME 255
H KN G M+PG +
Sbjct: 283 PHFKKNKAVGIMKPGHV------------------------------------------- 299
Query: 256 PGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FTIEP++ G+ + D WT T D +AQFEHT+L+T +G ++LT
Sbjct: 300 ----FTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILT 348
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 124
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 125 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 184
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 185 HYDS------------------RETNVV----------------------------LKPG 198
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 199 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 124
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 125 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVL 184
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 185 HYDS------------------RETNVV----------------------------LKPG 198
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 199 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 124
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 125 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVL 184
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 185 HYDS------------------RETNVV----------------------------LKPG 198
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 199 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 124
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 125 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 184
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 185 HYDS------------------RETNVV----------------------------LKPG 198
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 199 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 124
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 125 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVL 184
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 185 HYDS------------------RETNVV----------------------------LKPG 198
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 199 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVL 183
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 184 HYDS------------------RETNVV----------------------------LKPG 197
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 198 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 184 HYDS------------------RETNVV----------------------------LKPG 197
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 198 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 184 HYDS------------------RETNVV----------------------------LKPG 197
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 198 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 184 HYDS------------------RETNVV----------------------------LKPG 197
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 198 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 64 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 123
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 124 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 183
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 184 HYDS------------------RETNVV----------------------------LKPG 197
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 198 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNG-AYPSPLNYKG 78
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y G
Sbjct: 2 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 61
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
YPKS+C S+N V CHGIPD ++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 62 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGER 121
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 122 LCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVL 181
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H + + VV ++PG
Sbjct: 182 HYDS------------------RETNVV----------------------------LKPG 195
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 196 MTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 246
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 131/285 (45%), Gaps = 46/285 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
VKTE +++ + E + V + + K +TT ELD A EL GA +P++ + +
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
P C SVN HGIP R + +GD+VN+DV+ NGY+ D +F VGE D K V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 140 -NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+VA A AI+ VKPG S IG + N A+QN L+V+ + GHG+G H AP H
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAP--AH 180
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
N YF T+ GM
Sbjct: 181 VLN----------------------------------YFDPKDKTLLTE---------GM 197
Query: 259 TFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDG 303
IEP +++ VT ++ W T D S AQ EHTV+VT DG
Sbjct: 198 VLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG 242
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 132/291 (45%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+KT S+I M ++ K L + + I T +++ E+ P+ Y G
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 79 YPKSICTSVNNVACHGIP-DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
Y + C SVN HG+P + ++GDIV+VDV G +GD + T+ VGE D GK
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
LV V ++ L AI ++KPG + I+ + V+ + +GHG+G H P I
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQI- 193
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
P PG+ + + G
Sbjct: 194 ------PNYGTPGTGV---------------------------------------VLRKG 208
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MT IEP+++ G+ +V + EDGWT VT D SR A FEHT+L+T +G ++LT
Sbjct: 209 MTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILT 259
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 132/298 (44%), Gaps = 53/298 (17%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
E +T ++ M + + L + + K ++T ELD A +I GA PS L Y G
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHG 92
Query: 79 YPKSICTSVNNVACHGIPDSRP-LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
+P SIC+SVN+ HGIP + L DGD+V++D L+G+HGD + TF VG V S +
Sbjct: 93 FPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEA 152
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIE----NVAKQ--NKLRVVPEILGHGIGSYFH 191
L + ++ A I+ + PG + + IE KQ +V GHGIG H
Sbjct: 153 LSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMH 212
Query: 192 GAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYP 251
P F PGK GP
Sbjct: 213 LDP--FLPNEGAPGK--------------------------------GP----------- 227
Query: 252 GKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLTY 309
+ G IEP+LT G Q +L D WT+VT D SR A +EHTV VT G ++LT
Sbjct: 228 -LLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRILTM 284
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 46/289 (15%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+K+ +I +M ES +L V + IK +T+ +++VF + I ++G + + Y+GY
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
+ C S+N+ CHG P + L+DGD++ VD+ V L G D ++ VGE L+
Sbjct: 64 KYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLM 123
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHT 199
V ++AL+ I + G IG I+ + VV + +GHGIG H +P I H
Sbjct: 124 EVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHY 183
Query: 200 KNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
G G+ +++ GM
Sbjct: 184 GE---------------------------AGKGL-------------------RLKEGMV 197
Query: 260 FTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP++ G ++ M +GWT TED + Q+EH++ +T +G ++LT
Sbjct: 198 ITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 59/314 (18%)
Query: 29 MHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS-PLNYKGYPKSICTSV 87
+ ++ ++A+ V + + + M EL ++I+ G P+ P+N S+
Sbjct: 6 LMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNL---------SI 56
Query: 88 NNVACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQ 144
N +A H P D+ L++GD + +DV V+++G+ D + T VG + L+ A++
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKE 113
Query: 145 ALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSY-FHGA---PDIFHTK 200
AL+AAISV + G +G IEN ++ + + + GH I Y H P+I+
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPH 173
Query: 201 NDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPD-IFHTKNDYPGKMEPGMT 259
++Y V K + + G G PP I+ D P ++
Sbjct: 174 DNY------------VLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDVPVRVAQA-R 220
Query: 260 FTIEPV-------------LTNG--NGQVTM----LED-----GWTIVTE-DDSRTAQFE 294
F + + L N GQ+ + LE G+ ++ E + AQFE
Sbjct: 221 FLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFE 280
Query: 295 HTVLVTYDGYKVLT 308
HT++V D V T
Sbjct: 281 HTIIVEKDSVIVTT 294
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 20/183 (10%)
Query: 29 MHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS-PLNYKGYPKSICTSV 87
+ ++ ++A+ V + + + M EL ++I+ G P+ P+N S+
Sbjct: 6 LMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNL---------SI 56
Query: 88 NNVACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQ 144
N +A H P D+ L++GD + +DV V+++G+ D + T VG + L+ A++
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKE 113
Query: 145 ALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSY-FHGA---PDIFHTK 200
AL+AAISV + G +G IEN ++ + + + GH I Y H P+I+
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPH 173
Query: 201 NDY 203
++Y
Sbjct: 174 DNY 176
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 75/291 (25%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+KT+ +I ++ ++C++A + E I E+ L+ NGA +
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFD---- 179
Query: 80 PKSICTSVNNVAC-HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+I S + A HG+ + +E GD+V +D+ N Y+ D + T VG + + +
Sbjct: 180 --TIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREI 237
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+ +A A+ KPG + SI + K+ +G G YF H
Sbjct: 238 YEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKE-----------YGYGDYF------IH 280
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
+ LGHG+G H P I ++ GM
Sbjct: 281 S-----------------------------LGHGVGLEIHEWPRISQYDETV---LKEGM 308
Query: 259 TFTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP + G V + E TVL+T +G K LT
Sbjct: 309 VITIEPGIYIPKLGGV------------------RIEDTVLITENGAKRLT 341
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 106/290 (36%), Gaps = 73/290 (25%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+K+E +I+++ ++C++A + E I E+ L+ NGA P +
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
I + + HG+ + +E GD+V +D+ Y+ D + T VG + K +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHT 199
+ +A A+ KPG + SI N+ I +G G YF+ H+
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNI-----------IAEYGYGEYFN------HS 284
Query: 200 KNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
LGHG+G H P + + GM
Sbjct: 285 -----------------------------LGHGVGLEVHEWPRVSQYDETV---LREGMV 312
Query: 260 FTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP + G V + E T+L+T +G K LT
Sbjct: 313 ITIEPGIYIPKIGGV------------------RIEDTILITKNGSKRLT 344
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 17/196 (8%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMT----TNELDVFAHELIINNGAYPSPLN 75
+KT+S+I+++ E+ ++A + I I+ ++ +NEL+ F GA S +
Sbjct: 130 IKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMR----KQGATSSSFD 185
Query: 76 YKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASG 135
+ + + + HG+ + +E GD V +D Y GY D + T VGE
Sbjct: 186 I-----IVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKL 240
Query: 136 KFLVNVAQQALHAAISVVKPGEYFSTIGSIIEN-VAKQNKLRVVPEILGHGIGSYFHGAP 194
K + N+ +A ++ +K G ++ + + ++ GHGIG H AP
Sbjct: 241 KEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAP 300
Query: 195 DIFHTKNDYPGKMEPG 210
+ + +EPG
Sbjct: 301 GLAFRSDTV---LEPG 313
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 16 EVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELI--INNGAYPSP 73
E+ +K + ++++M + ++A V + I + M EL + LI +++G P
Sbjct: 127 ELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEP 186
Query: 74 LNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA 133
+ + + N H P R + GDI+ +D GY D + T +GE+D
Sbjct: 187 I--------VASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDE 238
Query: 134 SGKFLVNVAQQALHAAISVVKPGEYFSTIGS-IIENVAKQNKLRVVPEILGHGIGSYFHG 192
+ V + A +A V+ G + S E ++K GHG+G H
Sbjct: 239 RLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLGLDVHE 298
Query: 193 APDI-----FHTKNDYPGKMEPG 210
P I KN +EPG
Sbjct: 299 EPYIGPDGEVILKNGMTFTIEPG 321
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 78 GYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVG---- 129
+P SI SVNN CH P L++GD+V +D+ V+++G+ + + TF +G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQG 125
Query: 130 -EVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGS 188
+V ++ A AA+ +VKPG + + VA + +L H +
Sbjct: 126 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 185
Query: 189 Y-FHGAPDIFHTKNDYPGK 206
+ G I D K
Sbjct: 186 HVIDGEKTIIQNPTDQQKK 204
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
VK E +I + ++ +++ + I+ MT E+ + GA +
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA-----F 187
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
+ + + HG + +E GD++ +D Y D + +GE K +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQN-KLRVVPEI----LGHGIGSYFHGAP 194
++ +A A+ + K G G ++++VA++ + + E LGHGIG H P
Sbjct: 248 SIVLEAQERALKIAKAG----VTGKLLDSVAREFIREKGYGEFFGHSLGHGIGLEVHEGP 303
Query: 195 DIFHTKNDYP 204
I +ND P
Sbjct: 304 AI-SFRNDSP 312
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 78 GYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVG---- 129
+P SI SVNN CH P L++GD+V +D+ V+++G+ + + TF V
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 132
Query: 130 -EVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGS 188
+V ++ A AA+ +VKPG + + VA + +L H +
Sbjct: 133 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 192
Query: 189 Y-FHGAPDIFHTKNDYPGK 206
+ G I D K
Sbjct: 193 HVIDGEKTIIQNPTDQQKK 211
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 78 GYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVG---- 129
+P SI SVNN CH P L++GD+V +D+ V+++G+ + + TF V
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 139
Query: 130 -EVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGS 188
+V ++ A AA+ +VKPG + + VA + +L H +
Sbjct: 140 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 199
Query: 189 Y-FHGAPDIFHTKNDYPGK 206
+ G I D K
Sbjct: 200 HVIDGEKTIIQNPTDQQKK 218
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 93 HGIPDSRPLEDGDIVNVDVT-VYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAIS 151
HG D R L+ GDIV VD+ Y GY+ D + T+ +G+ + Q+A AA+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 152 VVKPGEYFSTIGSIIENVAKQNKL-RVVPEILGHGIGSYFHGAPDIFHTKNDYP 204
V+PG + + + +V L GHGIG H P I N+ P
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLAEYFVHRTGHGIGLCVHEEPYIV-AGNELP 329
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 65/312 (20%)
Query: 15 PEVPEV---KTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELD-VFAHELIINNGAY 70
PE+ E KT+ ++ ++ + K++ + + +KV M EL+ +F H G
Sbjct: 179 PEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGG-- 236
Query: 71 PSPLNYKGYPKSICTSVNNVAC-----HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSAT 125
+ + Y IC S N A G P+ R +++GD+ D+ + D + +
Sbjct: 237 ---MRHSSY-TCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCS 292
Query: 126 F-CVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGH 184
F G+ A K + ++ A + +KPG ++ + + + R+ E L H
Sbjct: 293 FPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLAD--------RIHLEELAH 344
Query: 185 -GIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFH---GP 240
GI S GS+ V H +P LGH +G H G
Sbjct: 345 MGILS---------------------GSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGY 383
Query: 241 PDIFHTKNDYPG--------KMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQ 292
P+ + D PG ++PGM T+EP + ++ D +R +
Sbjct: 384 PEGVE-RIDEPGLRSLRTARHLQPGMVLTVEP-------GIYFIDHLLDEALADPARASF 435
Query: 293 FEHTVLVTYDGY 304
F VL + G+
Sbjct: 436 FNREVLQRFRGF 447
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMAGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+ P L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPG 156
D + TF V G+ + + + ++ ++L ++ + +PG
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+ P L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V + GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
D + TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 DITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 39/229 (17%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 217 HEFNRHGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAG 270
Query: 121 DCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVP 179
+ TF V G+ + + + ++ ++L ++ + +PG SI+E + ++ +V
Sbjct: 271 AITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGT------SILEVTGEVVRI-MVS 323
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG 239
++ GI G + E +A++ L H +G H
Sbjct: 324 GLVKLGILK---------------------GDVDELIAQNAHRPFFMHGLSHWLGLDVH- 361
Query: 240 PPDIFHTKNDYPGKMEPGMTFTIEPVLTNG-NGQVTMLEDGWTIVTEDD 287
D+ D +EPGM T+EP L + +V G I EDD
Sbjct: 362 --DVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDD 408
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 85 TSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQ 144
+ +N H +R + GDI++++ + GY+ T + L V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 145 ALHAAISVVKPGEYFSTIGSIIENV-AKQNKLRVVPEILGHGIG--SYFHGAPDIFHTKN 201
A + ++KPG S I + + K + L+ GH G S+++G +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 202 DYPGKMEPGSII 213
D +EPG ++
Sbjct: 343 DIDTVLEPGMVV 354
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 85 TSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQ 144
+ +N H +R + GDI++++ + GY+ T + L V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 145 ALHAAISVVKPGEYFSTIGSIIENV-AKQNKLRVVPEILGHGIG--SYFHGAPDIFHTKN 201
A + ++KPG S I + + K + L+ GH G S+++G +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE 342
Query: 202 DYPGKMEPGSII 213
D +EPG ++
Sbjct: 343 DIDTVLEPGMVV 354
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 101 LEDGDIVNVDVTVYLNGYHGDCSATFCV-GEVDASGKFLVNVAQQALHAAISVVKPG 156
+ DGD+V +D GY GD + TF V G+ + + + ++ ++L ++ + +PG
Sbjct: 252 MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPG 308
>pdb|4B28|A Chain A, Crystal Structure Of Dmsp Lyase Rddddp From Roseobacter
Denitrificans
Length = 470
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 18/60 (30%)
Query: 249 DYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
DYP +EPGMT +E +++ G ++ + E VL+T DGY+ LT
Sbjct: 417 DYP--LEPGMTLCVEALISEEGGDFSI----------------KLEDQVLITEDGYENLT 458
>pdb|2A1X|A Chain A, Human Phytanoyl-Coa 2-Hydroxylase In Complex With Iron And
2- Oxoglutarate
Length = 308
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 232 GIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQ 272
G+ FHG D K ME G T P+L +G+GQ
Sbjct: 198 GVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQ 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,607,875
Number of Sequences: 62578
Number of extensions: 476728
Number of successful extensions: 1276
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 98
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)