RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9913
(309 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 329 bits (845), Expect = e-114
Identities = 127/283 (44%), Positives = 159/283 (56%), Gaps = 46/283 (16%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICT 85
I M E+ ++ VLD +A+ IK +TT ELD AHE I +GAYP+PL Y G+PKSICT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 86 SVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQA 145
SVN V CHGIPD R L+DGDIVN+DV V L+GYHGD + TF VGEV K LV V ++A
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 146 LHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDYPG 205
L+ I VKPG IG IE A++N VV E GHGIG FH P I +
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPN------- 173
Query: 206 KMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPV 265
+ + K++PGM FTIEP+
Sbjct: 174 ---------------------------------------YGRPGTGPKLKPGMVFTIEPM 194
Query: 266 LTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
+ G +V L DGWT+VT+D S +AQFEHTVL+T DG ++LT
Sbjct: 195 INLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILT 237
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 319 bits (820), Expect = e-110
Identities = 125/289 (43%), Positives = 158/289 (54%), Gaps = 46/289 (15%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+KT +I M + +LA VLD I H+K +TT ELD A E I + GA P+PL Y G+
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
PKSICTSVN V CHGIP + L++GDIVN+DVTV +GYHGD S TF VGE+ K L
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLC 124
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHT 199
V ++AL+ I+ VKPG IG I+ A+ VV E GHGIG FH P I H
Sbjct: 125 EVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPH- 183
Query: 200 KNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
Y PG GP ++ GM
Sbjct: 184 ---YG---APG---------------------------DGP------------VLKEGMV 198
Query: 260 FTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FTIEP++ G +V L+DGWT+VT+D S +AQ+EHTV VT DG ++LT
Sbjct: 199 FTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGPEILT 247
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 280 bits (719), Expect = 5e-93
Identities = 132/308 (42%), Positives = 162/308 (52%), Gaps = 51/308 (16%)
Query: 6 FASGKPGKSPE-----VPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFA 60
G P P E+KT QI+ M E+C++AR VLD A IK +TT+E+D
Sbjct: 118 ALDGTPKIEPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVV 177
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE I G YPSPLNY +PKS CTSVN V CHGIPD+R LEDGDIVNVDVTVY G HG
Sbjct: 178 HEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHG 237
Query: 121 DCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPE 180
D + TF VG VD + + LV + L AI++VKPG + +G +I A + L VV
Sbjct: 238 DLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKS 297
Query: 181 ILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGP 240
GHGIG FH AP+I H
Sbjct: 298 YCGHGIGELFHCAPNIPH------------------------------------------ 315
Query: 241 PDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVT 300
+ +N G M+ G FTIEP++ G + M DGWT VT D R+AQFEHT+LVT
Sbjct: 316 ----YARNKAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVT 371
Query: 301 YDGYKVLT 308
G +VLT
Sbjct: 372 ETGVEVLT 379
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 275 bits (706), Expect = 9e-93
Identities = 106/291 (36%), Positives = 146/291 (50%), Gaps = 45/291 (15%)
Query: 18 PEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYK 77
E+K+ ++ M + ++ L + + ++ MTT ELD A + + +GA PSP Y
Sbjct: 8 MEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYY 67
Query: 78 GYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
G+P S C SVN HGIP R ++DGD+VN+DV+ YL+GYHGD TF VG V +
Sbjct: 68 GFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEK 127
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L VA++AL A I VK G + IG IE+ AK+N VV ++ GHG+G H P +
Sbjct: 128 LCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSVI 187
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
T Y + N + PG
Sbjct: 188 LT---YTDPL------PNR------------------------------------LLRPG 202
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MT +EP L G L+DGWT+VT D S +AQFEHTV+VT DG ++LT
Sbjct: 203 MTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEILT 253
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 273 bits (701), Expect = 5e-92
Identities = 109/293 (37%), Positives = 147/293 (50%), Gaps = 49/293 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+KT +I M E+ K+A L +A +K +TT ELD A E I GAYP+ L YKG
Sbjct: 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKG 63
Query: 79 YPKSICTSVNNVACHGIP-DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV-DASGK 136
+P C SVN V HGIP D + L++GDIV +DV +++GY GD + TF VGEV D K
Sbjct: 64 FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAK 123
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDI 196
L+ ++AL+A I VKPG IG I+ A+ VV + GHGIG H P I
Sbjct: 124 RLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEPSI 183
Query: 197 FHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEP 256
+ D +++
Sbjct: 184 PNYGKD----------------------------------------------GTGVRLKE 197
Query: 257 GMTFTIEPVLTNGNGQV-TMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GM F IEP++ G+G+V D WT+VT+D S +AQFEHTV+VT DG ++LT
Sbjct: 198 GMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTEDGCEILT 250
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 233 bits (597), Expect = 2e-76
Identities = 100/290 (34%), Positives = 151/290 (52%), Gaps = 46/290 (15%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+K+ +I + ++ +LA VL+ + +K ++T ELD A + I +GA P+ L Y G
Sbjct: 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYG 61
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+P S+C SVN V HGIPD + L+DGDIVN+DV V +GYHGD + TF VG++ + L
Sbjct: 62 FPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKL 121
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+ +++L+ AI KPG IG+ I+ A+ VV E GHGIG FH P I +
Sbjct: 122 LECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIPN 181
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
+ K +++ GM
Sbjct: 182 ----------------------------------------------YGKKFTNVRLKEGM 195
Query: 259 TFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FTIEP++ G ++T DGWT+ T+D S +AQFEHT+++T +G ++LT
Sbjct: 196 VFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNGPEILT 245
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 208 bits (530), Expect = 8e-66
Identities = 103/292 (35%), Positives = 153/292 (52%), Gaps = 50/292 (17%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG- 78
+KT QI + ++C++ +LD + E K +TTNELD + EL A P+PLNY
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSP 102
Query: 79 -YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
+PK+ICTS+N V CHGIP+ PL++GDI+N+DV+ ++GY+GDCS +GEV K
Sbjct: 103 PFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKK 162
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
+ + + L+AAI+++KPG IG +IEN A + VV + +GHG+G FH P +
Sbjct: 163 VCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVP 222
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
H +N P + PG
Sbjct: 223 HHRN----------------------------------SSKIP-------------LAPG 235
Query: 258 MTFTIEPVLTNGNGQ-VTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
M FTIEP++ G + V + W T D+ +AQ+EHT+L+T GY++LT
Sbjct: 236 MIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILITETGYEILT 287
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 154 bits (391), Expect = 4e-46
Identities = 73/276 (26%), Positives = 99/276 (35%), Gaps = 71/276 (25%)
Query: 27 RLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICTS 86
LM ++ ++A L+ I+ +T EL + G +P + +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA----RGPAFPPIVASG 56
Query: 87 VNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQAL 146
N H IP R L+DGD+V +DV +GYH D + TF VG+ + L +A
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 147 HAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPDIFHTKNDYPG 205
AAI+ VKPG + + V ++ G G YF HG
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEE-----------GGYGEYFPHG------------- 152
Query: 206 KMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHG-PPDIFHTKNDYPGKMEPGMTFTIEP 264
LGHGIG H P I ND +EPGM FTIEP
Sbjct: 153 -----------------------LGHGIGLDVHDEGPYISRGGNDRV--LEPGMVFTIEP 187
Query: 265 VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVT 300
I + E TVLVT
Sbjct: 188 ----------------GIYFIPGWGGVRIEDTVLVT 207
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 149 bits (377), Expect = 1e-43
Identities = 94/289 (32%), Positives = 131/289 (45%), Gaps = 46/289 (15%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+KT+++I LMHES KL IA+ +K +TT E++ F + +GA Y GY
Sbjct: 4 IKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGY 63
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
P +IC SVN+ CH P PL +GDIV +D+ V LNG D + T+ VG+V + L+
Sbjct: 64 PYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLL 123
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHT 199
VA+ AL+ I G IG IE+ V + GHGIG H P IFH
Sbjct: 124 LVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFH- 182
Query: 200 KNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
G GP +++ GM
Sbjct: 183 ---------------------------------FGKQGQGP------------ELQEGMV 197
Query: 260 FTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP++ G + +GWT T D +AQ+EHT+ +T DG +LT
Sbjct: 198 ITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGPIILT 246
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 113 bits (284), Expect = 3e-30
Identities = 63/281 (22%), Positives = 99/281 (35%), Gaps = 76/281 (27%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICT 85
I + ++ ++A + AE I+ +T E+ + + G YP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAGPT--------IV 52
Query: 86 SVNNVA--CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQ 143
H PD R L++GD+V VD+ +GYH D + TF +GE + L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 144 QALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDY 203
+A AA++ ++PG + + V ++ HG+G F
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEE-----------HGLGPNF------------- 148
Query: 204 PGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIE 263
GHGIG H PP + K +EPGM F +E
Sbjct: 149 ----------------------GHRTGHGIGLEIHEPPVL---KAGDDTVLEPGMVFAVE 183
Query: 264 PVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGY 304
P + + E TVLVT DG
Sbjct: 184 P-----------------GLYLPGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 105 bits (264), Expect = 2e-26
Identities = 66/247 (26%), Positives = 97/247 (39%), Gaps = 66/247 (26%)
Query: 34 KLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS-PLNYKGYPKSICTSVNNVAC 92
K+A V + A+ IK ++ F I GA P+ P N S+N VA
Sbjct: 10 KIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPAFPCN---------ISINEVAA 60
Query: 93 HGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVNVAQQALH 147
H P D R +GD+V +D+ +++GY D + T VD GK+ LV +++AL
Sbjct: 61 HYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVT-----VDLGGKYEDLVEASEEALE 115
Query: 148 AAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDYPGKM 207
AAI VV+PG IG +IE + + + + GHG+ Y H
Sbjct: 116 AAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERY------ELHA-------- 161
Query: 208 EPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLT 267
G I N + K+E G + IEP T
Sbjct: 162 --GPSIPNYDEGGG------------------------------VKLEEGDVYAIEPFAT 189
Query: 268 NGNGQVT 274
+G G+V
Sbjct: 190 DGEGKVV 196
Score = 35.9 bits (84), Expect = 0.020
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 291 AQFEHTVLVTYDGYKVLT 308
+Q EHTV+VT DG +V T
Sbjct: 273 SQAEHTVIVTEDGCEVTT 290
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 105 bits (265), Expect = 4e-26
Identities = 72/292 (24%), Positives = 112/292 (38%), Gaps = 74/292 (25%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGA-YPSPLNYKG 78
+K+ ++I + ++ ++A L+ E I+ MT E+ + GA PS
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTI-- 211
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+ + N H P R L DGD+V +D+ NGY D + TF +G+ + +
Sbjct: 212 ----VASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+A AAI+ ++PG G ++ A R V E G+G+ + HG
Sbjct: 268 YEAVLEAQEAAIAAIRPG----VTGGEVDAAA-----RQVLEKAGYGLY-FLHG------ 311
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYF--HGPPDIFHTKNDYPGKMEP 256
GHG+G H P +EP
Sbjct: 312 ------------------------------TGHGVGFVLDVHEHPQYL--SPGSDTTLEP 339
Query: 257 GMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GM F+IEP + + G + ED TVLVT DG++VLT
Sbjct: 340 GMVFSIEPGI--------YIPGGGGVRIED---------TVLVTEDGFEVLT 374
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 89.9 bits (224), Expect = 1e-21
Identities = 66/244 (27%), Positives = 92/244 (37%), Gaps = 64/244 (26%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHEL---IINNGAYPSPLNYKGYPKS 82
I L+ ++ ++A + + E IK MT E +V A EL + GA + +
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMT--EREV-AAELEYFMRKLGAEGPSFD------T 51
Query: 83 ICTSVNNVA-CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNV 141
I S N A HG+P R +E+GD+V +D +GY D + T VGE K + +
Sbjct: 52 IVASGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEI 111
Query: 142 AQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPDIFHTK 200
+A AAI VKPG ++ A+ I G G YF H
Sbjct: 112 VLEAQQAAIKAVKPG----VTAKEVDKAARDV-------IEEAGYGEYFIHR-------- 152
Query: 201 NDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTF 260
GHG+G H P I +E GM F
Sbjct: 153 ----------------------------TGHGVGLEVHEAPYI---SPGSDDVLEEGMVF 181
Query: 261 TIEP 264
TIEP
Sbjct: 182 TIEP 185
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 91.2 bits (227), Expect = 3e-21
Identities = 80/311 (25%), Positives = 119/311 (38%), Gaps = 59/311 (18%)
Query: 31 ESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS-PLNYKGYPKSICTSVNN 89
E+ ++ R V IK MT E+ F I GA P+ P+N S+N
Sbjct: 6 EAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPAFPVN---------LSINE 56
Query: 90 VACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVNVAQQ 144
A H P D L++GD+V +D +++GY D + T VD K+ L+ A++
Sbjct: 57 CAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFT-----VDFDPKYDDLLEAAKE 111
Query: 145 ALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSY-FHGAPDIFHTKNDY 203
AL+AAI P IG IE V + + + + GH I Y H I + K
Sbjct: 112 ALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKGGE 171
Query: 204 PGKMEPGSI--IENVAKHNKLRVVPEILGHGIGSYFHGPP-DIFHTKNDYPGKMEPG--- 257
++E G + IE A G G GP I+ D P ++
Sbjct: 172 GTRLEEGDVYAIEPFATT------------GKGYVHDGPECSIYMLNRDKPLRLPRARKL 219
Query: 258 ----------MTFT----IEPVLTNGNGQVTMLED-----GWTIVTE-DDSRTAQFEHTV 297
+ F T + L + ++ E AQFEHT+
Sbjct: 220 LDVIYENFGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTI 279
Query: 298 LVTYDGYKVLT 308
+V DG +V T
Sbjct: 280 IVREDGKEVTT 290
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 79.8 bits (197), Expect = 4e-17
Identities = 64/248 (25%), Positives = 94/248 (37%), Gaps = 62/248 (25%)
Query: 31 ESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICTSVNNV 90
E+ K+ V A+ I + E+ F I GA P +P +I S+N
Sbjct: 10 EAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPCNI--SINEC 61
Query: 91 ACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALH 147
A H P D +DGD+V +D+ +++GY D + T ++ LV A+ AL+
Sbjct: 62 AAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNLVKAAKDALY 118
Query: 148 AAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDYPGKM 207
AI ++ G IG I+ V I SY +
Sbjct: 119 TAIKEIRAGVRVGEIGKAIQEV----------------IESY----------------GV 146
Query: 208 EPGSIIENVAKHNKLRVVPEILGHGIGSY-FHGPPDIFHTKNDYPGKMEPGMTFTIEPVL 266
+P I N+ GH + Y HG I + K K+E G IEP
Sbjct: 147 KP---ISNLT------------GHSMAPYRLHGGKSIPNVKERDTTKLEEGDVVAIEPFA 191
Query: 267 TNGNGQVT 274
T+G G VT
Sbjct: 192 TDGVGYVT 199
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 76.8 bits (189), Expect = 4e-16
Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 74/262 (28%)
Query: 75 NYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTV--------------------- 113
YP + C +N+ H P L++GD++ VD+ +
Sbjct: 63 AMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQ 122
Query: 114 ---YLNGYHG---DCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIE 167
Y Y G D + VG K L++V ++A++ I G IG+ I+
Sbjct: 123 MKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQ 182
Query: 168 NVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPE 227
A+ VV +++GHG+G H P + +
Sbjct: 183 EYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYG--------------------------- 215
Query: 228 ILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQV-TMLEDGWTIVTED 286
G G+ ++ GM TIEP++ G ++ T ++ GW T D
Sbjct: 216 TAGRGL-------------------RLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLD 256
Query: 287 DSRTAQFEHTVLVTYDGYKVLT 308
+ Q+EH ++T DG +LT
Sbjct: 257 GGLSCQYEHQFVITKDGPVILT 278
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 56.0 bits (135), Expect = 6e-09
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 76 YKGYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV 131
KG C SVNN H P L++GD+V +D+ +++G+ + TF VG
Sbjct: 72 EKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVA 131
Query: 132 DA---SGKF--LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGH 184
+G+ ++ A A AA+ +VKPG + + I VA V +L H
Sbjct: 132 QEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSH 189
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 54.9 bits (133), Expect = 8e-09
Identities = 72/293 (24%), Positives = 100/293 (34%), Gaps = 61/293 (20%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELD-VFAHELIINNGAYPSPLNYKGYPKSIC 84
I LM ++C ++ + + M+ EL+ F +E
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLAYS------YIVAA 54
Query: 85 TSVNNVAC-HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF------ 137
S N A H + + +PL+DGD+V +D GY D + TF +GKF
Sbjct: 55 GS--NAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTF-----PVNGKFTDEQRE 107
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L A AAI+ KPG + I + V + + GI G D
Sbjct: 108 LYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAE-------GLKELGI---LKGDVD-- 155
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
E V + P LGH +G H + +EPG
Sbjct: 156 ----------------EIVESGAYAKFFPHGLGHYLGLDVHDVGG-YLRYLRRARPLEPG 198
Query: 258 MTFTIEPVL--TNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
M TIEP + V G I EDD VLVT DG + LT
Sbjct: 199 MVITIEPGIYFIPDLLDVPEYFRGGGIRIEDD---------VLVTEDGPENLT 242
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 50.8 bits (121), Expect = 4e-07
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 16 EVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLN 75
E+ +K+ +I + +S ++ + + A+ I+V T EL ++ ++P N
Sbjct: 173 EIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVM---SFPET-N 228
Query: 76 YKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASG 135
+ + ++ + +N + I D+ P + GD++ D + + GY D + TF +GE D
Sbjct: 229 FSRF--NLISVGDNFSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLT 286
Query: 136 KFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEI----LGHGIGSYF 190
+ + + + +S+V PG + V K + L P LGHG G +
Sbjct: 287 QQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGL---PHYNRGHLGHGDGVFL 342
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 49.6 bits (118), Expect = 8e-07
Identities = 68/303 (22%), Positives = 98/303 (32%), Gaps = 94/303 (31%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTN--------ELDVFAHELIINNGAY 70
++KT ++ + +C +A D AEHI+ + EL+ F + GA
Sbjct: 126 QIKTPEEVEKIRLACGIA----DRGAEHIRRFIQAGMSEREIAAELEWFMRQ----QGAE 177
Query: 71 PSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGE 130
+ + + + HG + + G+ V +D GY D + T V
Sbjct: 178 KA-----SFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNG 232
Query: 131 VDASGKF--LVNVAQ---QALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHG 185
S + L NV Q QA AAIS ++PG + V I G
Sbjct: 233 EGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRV-----------ITEAG 281
Query: 186 IGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFH 245
G YF HN GH IG H P
Sbjct: 282 YGDYF---------------------------GHNT--------GHAIGIEVHEDPRFSP 306
Query: 246 TKNDYPGKMEPGMTFTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGY 304
++PGM T+EP + G G V + E VLVT G
Sbjct: 307 RDTT---TLQPGMLLTVEPGIYLPGQGGV------------------RIEDVVLVTPQGA 345
Query: 305 KVL 307
+VL
Sbjct: 346 EVL 348
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 48.5 bits (116), Expect = 9e-07
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 75 NYKGYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGE 130
KG C SVNN CH P + L+DGD+V +D+ +++GY + T VG
Sbjct: 53 LEKGIAFPTCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGA 112
Query: 131 VDASGKF-----LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGH 184
+ ++ A AL AA+ +++PG S I I+ V V +L H
Sbjct: 113 EAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSH 171
Score = 27.3 bits (61), Expect = 8.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 290 TAQFEHTVLVTYDGYKVLT 308
AQF+ TVL+T +G VLT
Sbjct: 209 VAQFKLTVLLTPNGVTVLT 227
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 46.2 bits (110), Expect = 1e-05
Identities = 48/195 (24%), Positives = 67/195 (34%), Gaps = 49/195 (25%)
Query: 86 SVNNVACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVN 140
S+N+ A H P D L D+ +D ++NG DC+ T K+ L+
Sbjct: 216 SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNP-----KYDPLLQ 270
Query: 141 VAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTK 200
+ A + I S IG+ I+ V I SY +
Sbjct: 271 ATKDATNTGIKEAGIDVRLSDIGAAIQEV----------------IESY----------E 304
Query: 201 NDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSY-FHGPPDIFHTKNDYPGKMEPGMT 259
+ GK P I N+ GH IG Y HG + K +ME G
Sbjct: 305 VEIKGKTYPIKSIRNLN------------GHSIGPYIIHGGKSVPIVKGGENTRMEEGEL 352
Query: 260 FTIEPVLTNGNGQVT 274
F IE + G G V
Sbjct: 353 FAIETFASTGRGYVN 367
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 41.2 bits (97), Expect = 4e-04
Identities = 59/255 (23%), Positives = 95/255 (37%), Gaps = 58/255 (22%)
Query: 61 HELIINNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHG 120
HE + YPS Y + + N H + + DGD+V +D GY G
Sbjct: 215 HEFNRHGARYPS------YNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAG 268
Query: 121 DCSATFCVGEVDASGKF------LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNK 174
D + TF V +GKF + ++ ++L ++ + +PG ++I + V +
Sbjct: 269 DITRTFPV-----NGKFTPAQREIYDIVLESLETSLRLYRPG---TSIREVTGEVVRI-- 318
Query: 175 LRVVPEILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIG 234
+V ++ GI G D +N + G L H +G
Sbjct: 319 --MVSGLVKLGI---LKGDVDQLIAENAHRPFFMHG------------------LSHWLG 355
Query: 235 SYFHGPPDIFHTKNDYPGKMEPGMTFTIEPVL-TNGNGQVTMLEDGWTIVTEDDSRTAQF 293
H D+ D +EPGM T+EP L + V G I EDD
Sbjct: 356 LDVH---DVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDD------ 406
Query: 294 EHTVLVTYDGYKVLT 308
+++T G + LT
Sbjct: 407 ---IVITETGNENLT 418
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 230 GHGIGSYF--H-GPPDIFHTKNDYPGKMEPGMTFTIEP 264
GHG+GS+ H GP I N+ P ++ GM + EP
Sbjct: 161 GHGVGSFLNVHEGPQSISPAPNNVP--LKAGMILSNEP 196
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 35.5 bits (81), Expect = 0.029
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 16 EVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLN 75
E+ +K+ +I+ + +S ++ + + ++ I+V T+ EL AY + +
Sbjct: 174 ELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------TAAYKAAVM 223
Query: 76 YKG---YPKSICTSVN-NVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV 131
K + + SV + + IP + GD++ D V ++GY D + TF VGE
Sbjct: 224 SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEP 283
Query: 132 DASGKFLVNVAQQALHAAISVVKPGEYFSTI-GSIIENVAKQNKLRVVPEILGHGIGSYF 190
+ + + +S+V PG + S +E + K LGHG G +
Sbjct: 284 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFL 343
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 35.1 bits (80), Expect = 0.033
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 16 EVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLN 75
E+ +K+ +I+ + +S ++ + + ++ I+V T+ EL AY + +
Sbjct: 91 ELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------TAAYKAAVM 140
Query: 76 YKG---YPKSICTSVN-NVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV 131
K + + SV + + IP + GD++ D V ++GY D + TF VGE
Sbjct: 141 SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVGEP 200
Query: 132 DASGKFLVNVAQQALHAAISVVKPGEYFSTI-GSIIENVAKQNKLRVVPEILGHGIGSYF 190
+ + + +S+V PG + S +E + K LGHG G +
Sbjct: 201 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFL 260
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 32.4 bits (74), Expect = 0.26
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 24/84 (28%)
Query: 94 GIPDSRPLEDGDIV-----NVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHA 148
G+ PL GD+V +V V V L G + D +LVNV Q L
Sbjct: 89 GVNRIAPLTTGDVVLQSARSVAVGVML-GIDPA--------QKDPLTPYLVNVKQTDL-- 137
Query: 149 AISVVKPGEYFSTIGSIIENVAKQ 172
+PG+Y +G E +A Q
Sbjct: 138 -----QPGKYNVILG---EQLAGQ 153
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 30.6 bits (69), Expect = 0.89
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 87 VNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV-DASGKFL-VNVAQQ 144
+N H +R ++ GDI++++ + GY+ T + EV DA K NVA
Sbjct: 63 INTDGAHNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVA-- 120
Query: 145 ALHAAISVVKPGEYFSTIGSII-ENVAKQNKLRVVPEILGHGIG--SYFHGAPDIFHTKN 201
+ ++KPG I + + E + + LR GH G S+++G +
Sbjct: 121 VHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSHYYGREAGLELRE 180
Query: 202 DYPGKMEPGSII 213
D +EPG ++
Sbjct: 181 DIDTVLEPGMVV 192
Score = 29.0 bits (65), Expect = 2.3
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 207 MEPGSIIENVA--------KHNKLRVVPEILGHGIG--SYFHGPPDIFHTKNDYPGKMEP 256
++PG+ +++A +H+ LR GH G S+++G + D +EP
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSHYYGREAGLELREDIDTVLEP 188
Query: 257 GMTFTIEPVLTNGNGQ 272
GM ++EP++ GQ
Sbjct: 189 GMVVSMEPMIMLPEGQ 204
>gnl|CDD|221481 pfam12239, DUF3605, Protein of unknown function (DUF3605). This
family of proteins is found in eukaryotes and viruses.
Proteins in this family are typically between 161 and
256 amino acids in length.
Length = 156
Score = 28.9 bits (65), Expect = 2.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 206 KMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
K + GSI+ + + +LR L G+ F P D ND+P EPG+
Sbjct: 36 KAKYGSIMRYILQE-RLRWGEGELEDLSGAPFADPSDYRILLNDWPYGFEPGIV 88
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 29.5 bits (66), Expect = 2.4
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNEL--DVFAHELIINN---GAYPS-- 72
VK+ ++I M + ++ + I E I+ M +L +++ + + G YP+
Sbjct: 158 VKSPTEIAYMRIAARIVENMHQRIFERIEPGMRKCDLVAEIYDAGIRGADGFGGDYPAIV 217
Query: 73 PLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGE-- 130
PL + + + A H D P++ G+ ++ YH S T +G+
Sbjct: 218 PL--------LPSGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPT 269
Query: 131 ---VDASGKFLVNVAQQALHAAISVVKPG 156
+DA L + + A ++ KPG
Sbjct: 270 QAFLDAEKAVL-----EGMEAGLAAAKPG 293
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose
isomerase; Validated.
Length = 948
Score = 29.6 bits (67), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 11/35 (31%)
Query: 209 PGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDI 243
PGS +E VAK + R + FHG PDI
Sbjct: 552 PGSSLEKVAKEDGFRKI-----------FHGDPDI 575
Score = 28.4 bits (64), Expect = 5.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 140 NVAQQALHAAISVV---KPGEYFSTI---GSIIENVAKQNKLRVVPEILGHGIGSYFHGA 193
N+ + A + V K G +F + GS +E VAK++ R + FHG
Sbjct: 524 NIFKDYFFARVKEVLGAKAGRHFVAVTDPGSSLEKVAKEDGFRKI-----------FHGD 572
Query: 194 PDI 196
PDI
Sbjct: 573 PDI 575
>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA)
domain PoS1-like. This group includes various PA
domain-containing proteins similar to Pleurotus
ostreatus (Po)S1. PoSl, the main extracellular protease
in P. ostreatus is a subtilisin-like serine protease
belonging to the peptidase S8 family. Ca2+ and Mn2+ both
stimulate the protease activity of (Po)S1. Ca2+ protects
PoS1 from autolysis. PoS1 is a monomeric glycoprotein,
which may play a role in the regulation of laccases in
lignin formation. (Po)S1 participates in the degradation
of POXA1b, and in the activation of POXA3, (POXA1b and
POXA3 are laccase isoenzymes), but its effect may be
indirect. The significance of the PA domain to PoS1 has
not been ascertained. It may be a protein-protein
interaction domain. At peptidase active sites, the PA
domain may participate in substrate binding and/or
promoting conformational changes, which influence the
stability and accessibility of the site to substrate.
Length = 129
Score = 28.1 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIV 107
+ S+ TSV + AC +PD P G IV
Sbjct: 31 WALSLDTSVADDACQPLPDDTPDLSGYIV 59
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 29.0 bits (66), Expect = 3.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 97 DSRPLEDGDIVNVDVTVYLNG 117
+ R E GD V +D +++G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDG 163
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 29.0 bits (66), Expect = 3.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 95 IPDSRPLEDGDIVNVDVTVYLNG 117
+P RP E+GD V +D ++G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDG 174
>gnl|CDD|129540 TIGR00448, rpoE, DNA-directed RNA polymerase (rpoE), archaeal and
eukaryotic form. This family seems to be confined to
the archea and eukaryotic taxa and are quite dissimilar
to E.coli rpoE [Transcription, DNA-dependent RNA
polymerase].
Length = 179
Score = 27.8 bits (62), Expect = 5.0
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 240 PPDIFHTK----------NDYPGKMEP--GMTFTIEPVLTNGNGQVTM 275
PPD F + G+++ G+ TI + G G+V
Sbjct: 14 PPDQFGEDLEEVITHQLNEKFEGRLDKNVGLCITIYDIEDIGEGKVIP 61
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 27.7 bits (62), Expect = 7.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 122 CSATFCVGEV--------DASGKFLVNVAQQALHAAISVVKPG 156
CS T + +A L + ++ L AA +VKPG
Sbjct: 165 CSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPG 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.416
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,845,765
Number of extensions: 1525832
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 69
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)