RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9913
(309 letters)
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 375 bits (965), Expect = e-132
Identities = 116/304 (38%), Positives = 159/304 (52%), Gaps = 46/304 (15%)
Query: 5 EFASGKPGKSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELI 64
E+ + P V+T I M + ++A L + + +TT+ELD AHE +
Sbjct: 26 EYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYL 85
Query: 65 INNGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSA 124
++NGAYPS L YKG+PKS CTS+N V CHGIPDS + DGDIVN+DVT Y+ G HGD +A
Sbjct: 86 VDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNA 145
Query: 125 TFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGH 184
TF G+V + LV+ ++A AI+ VKPG S IG +IE+ A + VV + GH
Sbjct: 146 TFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGH 205
Query: 185 GIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIF 244
GIG+ FH + H
Sbjct: 206 GIGTTFHNGLVVLH---------------------------------------------- 219
Query: 245 HTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGY 304
+ + M+PGMTFTIEP++ G + +DGWT+VT+D TAQFEHT+LVT G
Sbjct: 220 YDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGV 279
Query: 305 KVLT 308
++LT
Sbjct: 280 EILT 283
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 371 bits (955), Expect = e-129
Identities = 107/305 (35%), Positives = 148/305 (48%), Gaps = 49/305 (16%)
Query: 7 ASGKPGKSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIIN 66
S K V E +I+ + E+C L R LD + +TT+E+D HE II
Sbjct: 90 ESELIYKRKSDIYVNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIK 149
Query: 67 NGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATF 126
N AYPS LNY +PKS CTSVN + CHGIPD RPL+ GDI+N+D++V+ G H D + T+
Sbjct: 150 NNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETY 209
Query: 127 CVGEVDAS---GKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILG 183
VG+++ GK LV +L AI KPG ++ IG++I+ + VV G
Sbjct: 210 FVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSG 269
Query: 184 HGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDI 243
HG+G FH P + H
Sbjct: 270 HGVGKLFHSNPTVPH--------------------------------------------- 284
Query: 244 FHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDG 303
KN G M+PG FTIEP++ G+ + D WT T D +AQFEHT+L+T +G
Sbjct: 285 -FKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNG 343
Query: 304 YKVLT 308
++LT
Sbjct: 344 VEILT 348
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 369 bits (949), Expect = e-129
Identities = 124/302 (41%), Positives = 154/302 (50%), Gaps = 46/302 (15%)
Query: 7 ASGKPGKSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIIN 66
S + K ++ + I M C+LAR VLD A IK +TT E+D H I
Sbjct: 62 ESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA 121
Query: 67 NGAYPSPLNYKGYPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATF 126
YPSPLNY +PKS CTSVN V CHGIPD RPL++GDIVNVD+T+Y NGYHGD + TF
Sbjct: 122 RNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETF 181
Query: 127 CVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGI 186
VGEVD + LV + L AI VKPG + +G+II+ A+ N VV GHGI
Sbjct: 182 FVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGI 241
Query: 187 GSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHT 246
FH AP++ H +
Sbjct: 242 HKLFHTAPNVPH----------------------------------------------YA 255
Query: 247 KNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKV 306
KN G M+ G FTIEP++ G Q DGWT VT D R+AQFEHT+LVT G ++
Sbjct: 256 KNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEI 315
Query: 307 LT 308
LT
Sbjct: 316 LT 317
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 329 bits (845), Expect = e-114
Identities = 112/291 (38%), Positives = 159/291 (54%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
++ TE M + KLA LD I +H+K N+TTN L+ H I ++ A P+PLNYKG
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+PKSICTS+N+V CHGIP+ +PL++GDIVN+DVTV L+G++GD S + VG+V K L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+ V A+ I VV+PG IG I++ A+++ VV + GHGIG FH P I +
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
Y G+ G ++ GM
Sbjct: 187 ----Y-GRNGTG-----------------------------------------LTLKEGM 200
Query: 259 TFTIEPVLTNGNGQVTMLE-DGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
FT+EP++ GN + + DGWT+ T D S +AQFEHT+ VT DG+++ T
Sbjct: 201 FFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 251
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 325 bits (836), Expect = e-112
Identities = 104/292 (35%), Positives = 155/292 (53%), Gaps = 48/292 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIIN-NGAYPSPLNYK 77
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y
Sbjct: 3 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 62
Query: 78 GYPKSICTSVNNVACHGIP-DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
GYPKS+C S+N V CHGIP D++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 122
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDI 196
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 123 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQV 182
Query: 197 FHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEP 256
H + + ++P
Sbjct: 183 LH----------------------------------------------YDSRETNVVLKP 196
Query: 257 GMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GMTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 197 GMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 313 bits (805), Expect = e-108
Identities = 92/291 (31%), Positives = 132/291 (45%), Gaps = 48/291 (16%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
VKTE +++ + E + V + + K +TT ELD A EL GA +P++ + +
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA-SGKFL 138
P C SVN HGIP R + +GD+VN+DV+ NGY+ D +F VGE D + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAP-DIF 197
+VA A AI+ VKPG S IG + N A+QN L+V+ + GHG+G H AP +
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
+ Y P + G
Sbjct: 183 N----Y-FD--PK---------------------------DKT------------LLTEG 196
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
M IEP +++ VT ++ W T D S AQ EHTV+VT DG + T
Sbjct: 197 MVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTT 247
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 299 bits (769), Expect = e-102
Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 46/289 (15%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+K+ +I +M ES +L V + IK +T+ +++VF + I ++G + + Y+GY
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLV 139
+ C S+N+ CHG P + L+DGD++ VD+ V L G D ++ VGE L+
Sbjct: 64 KYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLM 123
Query: 140 NVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHT 199
V ++AL+ I + G IG I+ + VV + +GHGIG H +P I H
Sbjct: 124 EVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPH- 182
Query: 200 KNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMT 259
Y G+ G G +++ GM
Sbjct: 183 ---Y-GE--AG---------------------------KGL------------RLKEGMV 197
Query: 260 FTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP++ G ++ M +GWT TED + Q+EH++ +T +G ++LT
Sbjct: 198 ITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 298 bits (766), Expect = e-102
Identities = 89/291 (30%), Positives = 133/291 (45%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+KT S+I M ++ K L + + I T +++ E+ P+ Y G
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 79 YPKSICTSVNNVACHGIP-DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
Y + C SVN HG+P + ++GDIV+VDV G +GD + T+ VGE D GK
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
LV V ++ L AI ++KPG + I+ + V+ + +GHG+G H P I
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 194
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
+ Y G PG G + G
Sbjct: 195 N----Y-GT--PG---------------------------TGV------------VLRKG 208
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MT IEP+++ G+ +V + EDGWT VT D SR A FEHT+L+T +G ++LT
Sbjct: 209 MTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILT 259
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 293 bits (753), Expect = e-100
Identities = 91/292 (31%), Positives = 130/292 (44%), Gaps = 43/292 (14%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
E +T ++ M + + L + + K ++T ELD A +I GA PS L Y G
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHG 92
Query: 79 YPKSICTSVNNVACHGIPDSRP-LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
+P SIC+SVN+ HGIP + L DGD+V++D L+G+HGD + TF VG V S +
Sbjct: 93 FPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEA 152
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L + ++ A I+ + PG + + IE R + G
Sbjct: 153 LSEATRLSMEAGIAAMIPGNRLTDVSHAIELGT-----RAAEKQFDRAFG---------- 197
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPG-KMEP 256
+V GHGIG H P + + G +
Sbjct: 198 --------------------------IVDGYGGHGIGRSMHLDPFLPNEGAPGKGPLLAV 231
Query: 257 GMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
G IEP+LT G Q +L D WT+VT D SR A +EHTV VT G ++LT
Sbjct: 232 GSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRILT 283
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 204 bits (522), Expect = 1e-63
Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 52/290 (17%)
Query: 18 PEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGA---YPSPL 74
+ + + +A VL + E ++ L +I+
Sbjct: 17 QTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKE 76
Query: 75 NYKGYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVG- 129
KG SVNN CH P L++GD+V +D+ V+++G+ + + TF V
Sbjct: 77 MKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDV 136
Query: 130 ----EVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHG 185
+V ++ A AA+ +VKPG + + VA + +L H
Sbjct: 137 AQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQ 196
Query: 186 IGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFH 245
+ + G P
Sbjct: 197 LKQHVI---------------------------------------DG-EKTIIQNPTDQQ 216
Query: 246 TKNDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEH 295
K+ + E + ++ ++++G G+ TI D S+ +
Sbjct: 217 KKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKM 266
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 183 bits (467), Expect = 2e-56
Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 61/266 (22%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICT 85
+ ++ ++A+ V + + + M EL ++I+ G P +P +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP------AFP--VNL 54
Query: 86 SVNNVACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVA 142
S+N +A H P D+ L++GD + +DV V+++G+ D + T VG + L+ A
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAA 111
Query: 143 QQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSY-FHGAPDIFHTKN 201
++AL+AAISV + G +G IEN ++ + + + GH I Y H I +
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPN--- 168
Query: 202 DYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFT 261
I ++ G F
Sbjct: 169 -------------------------------IYRPHDNY------------VLKEGDVFA 185
Query: 262 IEPVLTNGNGQVTMLEDGWTIVTEDD 287
IEP T G GQV + + D
Sbjct: 186 IEPFATIGAGQVIEVPPTLIYMYVRD 211
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 160 bits (407), Expect = 5e-46
Identities = 51/300 (17%), Positives = 91/300 (30%), Gaps = 58/300 (19%)
Query: 13 KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS 72
+ + + +E E+ + R V + IK MT E+ +
Sbjct: 153 EEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG 212
Query: 73 PLNYKGYPKSICTSVNNVACHGIP---DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVG 129
+P S+NN A H P D+ L+ DI +D +++G DC+ T
Sbjct: 213 LNAGLAFP--TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFN 270
Query: 130 EVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSY 189
+ L+ + A + I +G I+ V +
Sbjct: 271 PKYDT---LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESY---------------- 311
Query: 190 FHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYF-HGPPDIFHTKN 248
+E K +++ + + GH IG Y H + K
Sbjct: 312 ----------------------EVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKG 349
Query: 249 DYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
+ME G + IE + G G V DD + + V + ++
Sbjct: 350 GEATRMEEGEVYAIETFGSTGKGVVH-----------DDMECSHYMKNFDVGHVPIRLPR 398
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 157 bits (399), Expect = 8e-46
Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 60/294 (20%)
Query: 13 KSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPS 72
++ E+ ++ + + R + ++ +T E+ +
Sbjct: 34 RNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGER 93
Query: 73 PLNYKGYPKSICTSVNNVACHGIP----DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCV 128
G+P S+N+ A H L++ D++ +D + +G D + T
Sbjct: 94 NNGI-GFP--AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAF 150
Query: 129 GEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGS 188
E L+ A++ I + IG I V +
Sbjct: 151 KENLEP---LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYE-------------- 193
Query: 189 YFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSY-FHGPPDIFHTK 247
+E + +R + ++ GH I + HG I
Sbjct: 194 ------------------------VEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVN 229
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTY 301
N +++ + +E T G G + +D + F +
Sbjct: 230 NRDTTRIKGDSFYAVETFATTGKGSI-----------DDRPPCSHFVLNTYKSR 272
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 117 bits (295), Expect = 2e-30
Identities = 37/294 (12%), Positives = 82/294 (27%), Gaps = 66/294 (22%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+K+ + L+ Z +++ A I + E+ + + ++ A P
Sbjct: 157 IKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMD 216
Query: 80 PKSICTSVNNVAC-HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
S N H R +Z GDI++++ + GY+ T + ZVB + +
Sbjct: 217 TWIWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZI 276
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPDIF 197
+ ++KPG I + + + Y G
Sbjct: 277 WZKNTAVHRRGLZLIKPG----ARCKDIASEL-----NBM--YRZWDLLRYRTFG----- 320
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPG---KM 254
GH G H +
Sbjct: 321 -------------------------------YGHSFGVLBHYYGR-EAGVELREDIZTVL 348
Query: 255 EPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
EPGM ++EP++ B G D +++ + + +T
Sbjct: 349 EPGMVVSMEPMVMBPEG----EPGAGGYREHDI---------LVIKENBTENIT 389
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 112 bits (281), Expect = 2e-28
Identities = 45/293 (15%), Positives = 88/293 (30%), Gaps = 64/293 (21%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
+K+ + ++ ++A + E + + E+ + A + ++ A
Sbjct: 157 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 216
Query: 80 PKSICTSVNNVAC-HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+ S N H +R + GDI++++ + GY+ T + L
Sbjct: 217 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 276
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPDIF 197
V + A + ++KPG S I + L H + Y G
Sbjct: 277 WQVNVEVHEAGLKLIKPG----ARCSDIAREL-----NEI--FLKHDVLQYRTFG----- 320
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHT--KNDYPGKME 255
GH G+ H + D +E
Sbjct: 321 -------------------------------YGHSFGTLSHYYGREAGLELREDIDTVLE 349
Query: 256 PGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
PGM ++EP++ G L D ++V +G + +T
Sbjct: 350 PGMVVSMEPMIMLPEG----LPGAGGYREHDI---------LIVNENGAENIT 389
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 108 bits (271), Expect = 3e-27
Identities = 66/294 (22%), Positives = 107/294 (36%), Gaps = 79/294 (26%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAY-PSPLNYK 77
+KT+S+I+++ E+ ++A + I I+ ++ E+ + GA S
Sbjct: 129 LIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS----- 183
Query: 78 GYPKSICTSVNNVA-CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
+ I S A HG+ + +E GD V +D Y GY D + T VGE K
Sbjct: 184 -FD-IIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLK 241
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPD 195
+ N+ +A ++ +K G ++ + I G G YF H
Sbjct: 242 EIYNIVLEAQLRGVNGIKAGLTGREADALTRDY-----------ITEKGYGEYFGHS--- 287
Query: 196 IFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKME 255
GHGIG H P + ++D +E
Sbjct: 288 ---------------------------------TGHGIGLEIHEAPGL-AFRSD--TVLE 311
Query: 256 PGMTFTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
PGM T+EP + G G V R E ++VT +G +V+T
Sbjct: 312 PGMAVTVEPGIYIPGIGGV---------------RI---EDDIIVTSEGNEVIT 347
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 107 bits (270), Expect = 4e-27
Identities = 56/294 (19%), Positives = 96/294 (32%), Gaps = 79/294 (26%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAY-PSPLNYK 77
VK E +I + ++ +++ + I+ MT E+ + GA +
Sbjct: 132 MVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA----- 186
Query: 78 GYPKSICTSVNNVA-CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
+ +I S A HG + +E GD++ +D Y D + +GE K
Sbjct: 187 -FD-TIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVK 244
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPD 195
+ ++ +A A+ + K G + S+ I G G +F H
Sbjct: 245 EVHSIVLEAQERALKIAKAGVTGKLLDSVAREF-----------IREKGYGEFFGHS--- 290
Query: 196 IFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKME 255
LGHGIG H P I +ND +
Sbjct: 291 ---------------------------------LGHGIGLEVHEGPAI-SFRND--SPLP 314
Query: 256 PGMTFTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
+ FT+EP + G + R E V++ G ++LT
Sbjct: 315 ENVVFTVEPGIYLEGKFGI---------------RI---EEDVVLKEQGCEILT 350
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 106 bits (267), Expect = 1e-26
Identities = 61/293 (20%), Positives = 96/293 (32%), Gaps = 77/293 (26%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
VK +++ + ++ V + + T ++ E I+ G
Sbjct: 149 MVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGH-------SA 201
Query: 79 YPKSICTSVNNVAC-HGIPDSRPLEDGDIVNVDV-TVYLNGYHGDCSATFCVGEVDASGK 136
I S + A H R L+ GDIV VD+ Y GY+ D + T+ +G+
Sbjct: 202 VAFVIVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVA 261
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPD 195
+ Q+A AA+ V+PG + + + +V + G+ YF H
Sbjct: 262 QQYSALQRAQRAAVDAVRPGVTAAQVDAAARDV-----------LADAGLAEYFVHR--- 307
Query: 196 IFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKME 255
GHGIG H P I N+ P +
Sbjct: 308 ---------------------------------TGHGIGLCVHEEPYI-VAGNELP--LV 331
Query: 256 PGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GM F+IEP G W ED V+VT +G +
Sbjct: 332 AGMAFSIEP------GIY--FPGRWGARIEDI---------VVVTENGALSVN 367
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 106 bits (266), Expect = 1e-26
Identities = 67/297 (22%), Positives = 110/297 (37%), Gaps = 85/297 (28%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHEL---IINNGAYPSPLN 75
+K+E +I+++ ++C++A + E I E +V A ++ + NGA
Sbjct: 126 IIKSEKEIKIIEKACEIADKAVMAAIEEITEGKK--EREV-AAKVEYLMKMNGA------ 176
Query: 76 YKGYP-KSICTSVNNVA-CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA 133
+ +I S A HG+ + +E GD+V +D+ Y+ D + T VG +
Sbjct: 177 -EKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNE 235
Query: 134 SGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HG 192
K + + +A A+ KPG + SI N+ I +G G YF H
Sbjct: 236 KQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNI-----------IAEYGYGEYFNHS 284
Query: 193 APDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPG 252
LGHG+G H P + ++
Sbjct: 285 ------------------------------------LGHGVGLEVHEWPRV-SQYDETV- 306
Query: 253 KMEPGMTFTIEP-VLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
+ GM TIEP + G V +ED T+L+T +G K LT
Sbjct: 307 -LREGMVITIEPGIYIPKIGGVR-IED-----------------TILITKNGSKRLT 344
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 105 bits (264), Expect = 3e-26
Identities = 63/293 (21%), Positives = 98/293 (33%), Gaps = 78/293 (26%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAH-ELIINNGAYPSPLNYK 77
+K + ++++M + ++A V + I + M E ++ EL+I +
Sbjct: 130 MIKDKEEVKMMEHASRIADKVFEEILTWDLIGMK--ERELALKIELLIRELSDGIAFE-- 185
Query: 78 GYPKSICTSVNNVA-CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
I S N A H P R + GDI+ +D GY D + T +GE+D
Sbjct: 186 ----PIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLV 241
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF-HGAPD 195
+ V + A +A V+ G + S V I G G YF H
Sbjct: 242 KIYEVVKDAQESAFKAVREGIKAKDVDSRAREV-----------ISKAGYGEYFIHR--- 287
Query: 196 IFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKME 255
GHG+G H P I + ++
Sbjct: 288 ---------------------------------TGHGLGLDVHEEPYI-GPDGEVI--LK 311
Query: 256 PGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GMTFTIEP G + + EDD ++V + LT
Sbjct: 312 NGMTFTIEP----G----IYVPGLGGVRIEDD---------IVVDEGKGRRLT 347
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 100 bits (250), Expect = 5e-24
Identities = 37/310 (11%), Positives = 79/310 (25%), Gaps = 77/310 (24%)
Query: 19 EVKTESQIRLMHESCKLA-----RFVLDCIAEHIKVNMTTNELDVFAH-ELIINNGAYPS 72
+K E ++ + + +++ ++ +D ++ +I E +I+N A+
Sbjct: 176 AIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQ 235
Query: 73 PLNYKG-----------YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGD 121
+ K Y I + + GD+V + Y +
Sbjct: 236 TKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSN 295
Query: 122 CSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEI 181
T+ + + + G I + I + + +
Sbjct: 296 VGRTYLFDPDSEQ-QKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRP------ 348
Query: 182 LGHGIGSYF-HGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGP 240
+ F LG GIG F
Sbjct: 349 ---DLEPNFVRN------------------------------------LGAGIGIEFRES 369
Query: 241 PDIFHTKNDYPGKMEPGMTFTIEPVLTNGNGQVTM--LEDGWTIVTEDDSRTAQFEHTVL 298
+ + KN ++ GMT + N + ++ D T+
Sbjct: 370 SLLVNAKNP--RVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLID---------TIQ 418
Query: 299 VTYDGYKVLT 308
+T V T
Sbjct: 419 ITRSDPIVFT 428
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 93.5 bits (232), Expect = 1e-21
Identities = 49/303 (16%), Positives = 85/303 (28%), Gaps = 87/303 (28%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVN-----MTTNELDVFAHELIINNGAYPSPL 74
VK +IR M + + + + + N++ H + G
Sbjct: 229 VKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIET 288
Query: 75 NYKGYPKSICTSVNNVA-CHGIPDSRPLEDGDIVNVDV-TVYLNGYHGDCSATFCVGEVD 132
+ S R + +I++ D V G D S ++ +G+
Sbjct: 289 R-------LLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQK 341
Query: 133 ASGK--FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYF 190
+ + + + + ++KPG I E A +L
Sbjct: 342 PRADMIYAMQHGVEHIRTNMEMLKPG------VMIPELSANT-------HVLDAKFQKQK 388
Query: 191 HGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKND- 249
+G L HG+G P + + +
Sbjct: 389 YGC-----------------------------------LMHGVGLC-DEWPLVAYPDHAV 412
Query: 250 ---YPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIV-TEDDSRTAQFEHTVLVTYDGYK 305
Y +EPGMT +E E G + ED VL+T DGY+
Sbjct: 413 AGAYDYPLEPGMTLCVEA----LIS----EEGGDFSIKLEDQ---------VLITEDGYE 455
Query: 306 VLT 308
LT
Sbjct: 456 NLT 458
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 82.8 bits (204), Expect = 7e-18
Identities = 38/321 (11%), Positives = 78/321 (24%), Gaps = 91/321 (28%)
Query: 19 EVKTESQIRLMHESCKLA----RFVLDCIAEHIKVNMTTNELDVFAH-ELIINNGAYPSP 73
EVK ++ + S K + + + + + + + E I++ +
Sbjct: 176 EVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQ 235
Query: 74 LNYKGYPKS-----------------ICTSVNNVA--CHGIPDSRPLEDGDIVNVDVTVY 114
L+ I S + L + +
Sbjct: 236 LSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIR 295
Query: 115 LNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNK 174
N Y + + TF + + + +++KPG + + ++
Sbjct: 296 YNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKT- 354
Query: 175 LRVVPEILGHGIGSYF-HGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGI 233
+ F +G I
Sbjct: 355 --------KPELVPNFTKN------------------------------------IGSLI 370
Query: 234 GSYFHGPPDIFHTKNDYPGKMEPGMTFTIEP---VLTNGNGQVTMLEDGWTIVTEDDSRT 290
G F I + KND K++ G F I L + + + + D
Sbjct: 371 GLEFRDSNFILNVKND-YRKIQRGDCFNISFGFNNLKDSQS-----ANNYALQLAD---- 420
Query: 291 AQFEHTVLVTYDGY---KVLT 308
TV + D + LT
Sbjct: 421 -----TVQIPLDETEPPRFLT 436
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 71.9 bits (177), Expect = 2e-14
Identities = 61/306 (19%), Positives = 104/306 (33%), Gaps = 77/306 (25%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELD-VFAHELIINNGAYPSPLNYKG 78
K+ +I ++ + ++ E + M L+ HE + YP
Sbjct: 175 FKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYP------S 228
Query: 79 YPKSICTSVNNVAC--HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
Y +I S N C H + + DGD+V +D GY GD + TF V +GK
Sbjct: 229 YN-TIVGSGEN-GCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPV-----NGK 281
Query: 137 F---------LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
F +V + + ++ + +PG + + + ++ GI
Sbjct: 282 FTQAQREIYDIVLESLE---TSLRLYRPGTSILEVTGEVVRIMVS-------GLVKLGI- 330
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
G + E +A++ L H +G H D+
Sbjct: 331 --------------------LKGDVDELIAQNAHRPFFMHGLSHWLGLDVH---DVGVYG 367
Query: 248 NDYPGKMEPGMTFTIEPVLTNG-----NGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYD 302
D +EPGM T+ P G + +V G I EDD +++T
Sbjct: 368 QDRSRILEPGMVLTVAP----GLYIAPDAEVPEQYRGIGIRIEDD---------IVITET 414
Query: 303 GYKVLT 308
G + LT
Sbjct: 415 GNENLT 420
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 70.3 bits (173), Expect = 8e-14
Identities = 59/301 (19%), Positives = 106/301 (35%), Gaps = 85/301 (28%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELD-VFAHELIINNGAYPSPLNYKG 78
KT+ +I ++ E+ + + + + +H K +M EL+ F L + +
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIKHH------A 224
Query: 79 YPKSICTSVNNVAC--HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
+ +I S N A H + +++GD+V +D+ + Y+ D S TF +G
Sbjct: 225 FN-TILASGKN-ATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPA-----NGT 277
Query: 137 F---------LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIG 187
F +V A + ++KPG F+ + + V + G+
Sbjct: 278 FSSRQKQIYNIVLNALK---ETTEIIKPGLKFAALNEHAKKVLAE-------GCKAVGL- 326
Query: 188 SYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTK 247
++ Y H + H +G H
Sbjct: 327 --IQEDEEL---SKYYY--------------HG--------VSHFLGLDTHDVGTY---- 355
Query: 248 NDYPGKMEPGMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVL 307
+E GM TIEP G + + E+ I EDD +LVT DG++ L
Sbjct: 356 --KDRVLEEGMVITIEP----G---LYIEEESIGIRIEDD---------ILVTKDGHENL 397
Query: 308 T 308
+
Sbjct: 398 S 398
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 68.6 bits (168), Expect = 4e-13
Identities = 64/323 (19%), Positives = 112/323 (34%), Gaps = 76/323 (23%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELD-VFAHELIINNGAYPSPLNYKG 78
KT+ ++ ++ + K++ + + +KV M EL+ +F H G +
Sbjct: 187 FKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGM-----RHSS 241
Query: 79 YPKSICTSVNNVA-----CHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA 133
Y IC S N A G P+ R +++GD+ D+ + D + +F
Sbjct: 242 YT-CICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPA----- 295
Query: 134 SGKF---------LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGH 184
+GKF V + + A + +KPG ++ + + + + + E+
Sbjct: 296 NGKFTADQKAVYEAVLRSSR---AVMGAMKPGVWWPDMHRLADRIHLE-------ELAHM 345
Query: 185 GIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIG-------SYF 237
GI G+ D V H +P LGH +G Y
Sbjct: 346 GI---LSGSVD------------------AMVQAHLGAVFMPHGLGHFLGIDVHDVGGYP 384
Query: 238 HGPPDIFHTKNDY---PGKMEPGMTFTIEPVL----TNGNGQVTMLEDGWTIVTEDDSRT 290
G I ++PGM T+EP + + + E R
Sbjct: 385 EGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRF 444
Query: 291 AQF-----EHTVLVTYDGYKVLT 308
F E V+VT G ++LT
Sbjct: 445 RGFGGVRIEEDVVVTDSGIELLT 467
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 62.1 bits (151), Expect = 5e-11
Identities = 59/333 (17%), Positives = 95/333 (28%), Gaps = 101/333 (30%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMT-----TNELDVFA-HELIINNGAYPSP 73
KT+ ++ M E+ K+A + H +E ++ + L +
Sbjct: 159 YKTQYELACMREANKIA------VQGHKAA-RDAFFQGKSEFEIQQAYLLATQHSE---- 207
Query: 74 LNYKGYPKSICTSVNNVAC---HGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGE 130
N Y +I N + D +D NGY D + T+
Sbjct: 208 -NDNPYG-NIVALNEN-CAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRTYDF-- 262
Query: 131 VDASGKF----LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEIL-GHG 185
+G+ LV +Q A ++ + PG+ + + + V + L
Sbjct: 263 ---TGEGEFAELVATMKQHQIALMNQLAPGKLYGELHLDCH--------QRVAQTLSDFN 311
Query: 186 IGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIG----------- 234
I + D E VAK P LGH IG
Sbjct: 312 I---VDLSAD------------------EIVAKGITSTFFPHGLGHHIGLQVHDVGGFMA 350
Query: 235 --SYFHGPPDIFHTKNDYPGKMEPGMTFTIEP-------VLTNGNGQVTMLEDGWTIVT- 284
H P H K+E FTIEP +L + W V
Sbjct: 351 DEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAE 410
Query: 285 ---------EDDSRTAQFEHTVLVTYDGYKVLT 308
ED+ ++V D + +T
Sbjct: 411 LKPFGGIRIEDN---------IIVHEDSLENMT 434
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 58.9 bits (143), Expect = 6e-10
Identities = 54/343 (15%), Positives = 92/343 (26%), Gaps = 118/343 (34%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMT-----TNELDVFA-HELIINNGAYPSP 73
KT+ ++ M E+ KLA +A H +E D+ + G
Sbjct: 159 YKTDYELDCMREANKLA------VAGHKAA-EQAFREGKSEFDINLAYAAASRQGD---- 207
Query: 74 LNYKGYPKSICTSVNNVACH---GIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGE 130
N Y SI + A D+ ++ +D +GY D + T+
Sbjct: 208 -NDVPYT-SIVALNEH-ASILHYMQCDTVAPKESRSFLIDAGANYHGYAADITRTYAQ-- 262
Query: 131 VDASGKF-------LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQN--KLRVVP-- 179
G L+ + + +KPG ++ I + + Q +V
Sbjct: 263 ---EGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLT 319
Query: 180 --EILGHGIGSYF--HGAPDIFHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIG- 234
EI+ GI F HG +GH +G
Sbjct: 320 PPEIVEMGITRTFFPHG------------------------------------IGHFLGL 343
Query: 235 ------------SYFHGPPDIFHTKNDYPGKMEPGMTFTIEP-----------VLTNGNG 271
P H +E FTIEP +
Sbjct: 344 QVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEARQVFTIEPGLYFIDSLLRDLKATPAS 403
Query: 272 Q---VTMLEDGWTIV---TEDDSRTAQFEHTVLVTYDGYKVLT 308
+ ++ ED+ ++V D + +T
Sbjct: 404 KYINWDTIDAYKPFGGIRIEDN---------IIVHRDKNENMT 437
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 39.9 bits (94), Expect = 8e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 230 GHGIGSYF--H-GPPDI-FHTKNDYPGKMEPGMTFTIEP 264
GHG+GS+ H GP I + T +D P +E GM T EP
Sbjct: 488 GHGVGSFLNVHEGPCGISYKTFSDEP--LEAGMIVTDEP 524
Score = 28.0 bits (63), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 183 GHGIGSYF--HGAPDIFHTKNDYPGKMEPGSIIEN 215
GHG+GS+ H P K +E G I+ +
Sbjct: 488 GHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTD 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.42
Identities = 41/267 (15%), Positives = 71/267 (26%), Gaps = 102/267 (38%)
Query: 28 LMHESCKLARFVLDCIAEHIKVNMTTNE------LDVFAH--ELIINNGAYPSPLNYKGY 79
L E L IAE I+ + T + D E +N P Y+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKM 374
Query: 80 -------PKSICTSVNNVACHGIP---------DSRPLEDGDIVN------------VDV 111
P S + IP D + +VN +
Sbjct: 375 FDRLSVFPP----SAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 112 TVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAI-------------SVVKPGE- 157
T+ + + + + ALH +I ++ P
Sbjct: 425 TISIPSIYLELKVK--------------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 158 -YF-STIG---SIIENVAK--------------QNKLRVVPEILGHGIGSYFHGAPDI-- 196
YF S IG IE+ + + K+R + GS + +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKF 529
Query: 197 ---FHTKNDYPGKMEPGSIIENVAKHN 220
+ ND + +I++ + K
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIE 556
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.3
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 34/102 (33%)
Query: 175 LRVVPEILGHG---------IGSYFHGA--PDIFHTK-----NDYPGKMEPGSIIENVAK 218
R P L HG S+F + + F+ + EP + E V K
Sbjct: 6 TR--PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 219 --------------HNKLRVVPEILGHGIGSYFHGPPDIFHT 246
+V+ L Y G DI H
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDI-HA 103
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 28.4 bits (64), Expect = 3.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 56 LDVFAHELIINNGAYPSPLNYKGYPKSICT 85
+DVF E N+ + SPL + + T
Sbjct: 257 IDVFPTEPATNSDPFTSPL--AEFDNVLLT 284
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 27.6 bits (62), Expect = 5.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 56 LDVFAHELIINNGAYPSPLNYKGYPKSICT 85
+DVF E N + +PL +G I T
Sbjct: 268 IDVFPVEPASNGERFSTPL--QGLENVILT 295
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 27.4 bits (61), Expect = 5.9
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 25/108 (23%)
Query: 12 GKSPEVPEVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHEL-------I 64
G S + K+ + ES K AR VL+ I I N + + + +L
Sbjct: 2 GSSHSTNDAKSPTL----SESHKSARNVLENIGIKIY-NQEIKKKNPYEQQLKGTLSRAQ 56
Query: 65 INNGAYPSPLNYKGYPKSIC-------TSVNNVA------CHGIPDSR 99
+ + + + C T++ C+G +R
Sbjct: 57 FVDALSSRYIEGRNSDGNSCNLDHLFHTNIKTGYNEGRKPCYGREQNR 104
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 27.1 bits (59), Expect = 8.3
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 180 EILGHGIGSYFHGAPDIFHTKNDYPGKMEPGSIIENVAKHN 220
E+LGHG G D F+ + P G + K
Sbjct: 461 ELLGHGSGKLLTEFTDGFNFDKENPPLGLDGKPVSTYYKVG 501
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 27.2 bits (61), Expect = 8.8
Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 148 AAIS--VVKPGEYFSTIGS--IIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
A + V+ + + +G+ + + + + + +P I
Sbjct: 247 ATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPV---GTIFRLAGIIAGKTL 298
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.416
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,963,705
Number of extensions: 310946
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 80
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)