RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9913
(309 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 173 bits (440), Expect = 2e-53
Identities = 104/292 (35%), Positives = 155/292 (53%), Gaps = 48/292 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIIN-NGAYPSPLNYK 77
+KT I M + +LA VL+ I ++K ++T ELD ++ I+N A + L Y
Sbjct: 2 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 61
Query: 78 GYPKSICTSVNNVACHGIP-DSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGK 136
GYPKS+C S+N V CHGIP D++ L+DGDIVN+DVTV +G+HGD S F VG+ G+
Sbjct: 62 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121
Query: 137 FLVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDI 196
L + Q++L+ A+ +VKPG IG+ I+ + VV E GHGIG FH P +
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQV 181
Query: 197 FHTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEP 256
H + + ++P
Sbjct: 182 LH----------------------------------------------YDSRETNVVLKP 195
Query: 257 GMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
GMTFTIEP++ G ++ ++DGWT+ T+D S +AQ+EHT++VT +G ++LT
Sbjct: 196 GMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 247
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 152 bits (383), Expect = 3e-45
Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 47/291 (16%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+KT S+I M ++ K L + + I T +++ E+ P+ Y G
Sbjct: 3 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 62
Query: 79 YPKSICTSVNNVACHGIPD-SRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
Y + C SVN HG+P + ++GDIV+VDV G +GD + T+ VGE D GK
Sbjct: 63 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 122
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
LV V ++ L AI ++KPG + I+ + V+ + +GHG+G H
Sbjct: 123 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELH------ 176
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPG 257
P + + G
Sbjct: 177 ----------------------------------------EDPQIPNYGTPGTGVVLRKG 196
Query: 258 MTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
MT IEP+++ G+ +V + EDGWT VT D SR A FEHT+L+T +G ++LT
Sbjct: 197 MTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILT 247
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 132 bits (333), Expect = 2e-37
Identities = 50/292 (17%), Positives = 87/292 (29%), Gaps = 53/292 (18%)
Query: 19 EVKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKG 78
+ +E E+ + R V + IK MT E+ +
Sbjct: 50 DQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLA 109
Query: 79 YPKSICTSVNNV-ACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 137
+P + D+ L+ DI +D +++G DC+ T
Sbjct: 110 FPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKY---DT 166
Query: 138 LVNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIF 197
L+ + A + I +G I+ V +
Sbjct: 167 LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESY------------------------ 202
Query: 198 HTKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFH-GPPDIFHTKNDYPGKMEP 256
+E K +++ + + GH IG Y + K +ME
Sbjct: 203 --------------EVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEE 248
Query: 257 GMTFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
G + IE G +V S TAQFEHT+L+ +V++
Sbjct: 249 GEVYAIET----------FGSTGKGVVDIKGSYTAQFEHTILLRPTCKEVVS 290
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 116 bits (290), Expect = 1e-31
Identities = 92/290 (31%), Positives = 130/290 (44%), Gaps = 46/290 (15%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGY 79
VKTE +++ + E + V + + K +TT ELD A EL GA +P++ + +
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 80 PKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASG-KFL 138
P C SVN HGIP R + +GD+VN+DV+ NGY+ D +F VGE D + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
+VA A AI+ VKPG S IG + N A+QN L+V+ + GHG+G H AP
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
D K + GM
Sbjct: 183 NYFDPKDKT---------------------------------------------LLTEGM 197
Query: 259 TFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
IEP +++ VT ++ W T D S AQ EHTV+VT DG + T
Sbjct: 198 VLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTT 247
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 108 bits (270), Expect = 2e-28
Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 47/288 (16%)
Query: 23 ESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKS 82
+I ++ + ++ E + M L+ H +GA Y Y
Sbjct: 2 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTI 56
Query: 83 ICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCV-GEVDASGKFLVNV 141
+ + N H + + DGD+V +D GY GD + TF V G+ + + + ++
Sbjct: 57 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 116
Query: 142 AQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKN 201
++L ++ + +PG + + + ++ +G ++
Sbjct: 117 VLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVK---------LGILKGDVDELIAQNA 167
Query: 202 DYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFH-GPPDIFHTKNDYPGKMEPGMTF 260
P HG+ + D+ D +EPGM
Sbjct: 168 HRPF-----------------------FMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVL 204
Query: 261 TIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
T+ P L + + + + E +++T G + LT
Sbjct: 205 TVAPGL--------YIAPDAEVPEQYRGIGIRIEDDIVITETGNENLT 244
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 91.6 bits (226), Expect = 1e-22
Identities = 53/288 (18%), Positives = 91/288 (31%), Gaps = 71/288 (24%)
Query: 21 KTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYP 80
KT+ +I ++ ++C++A + E I E+ L+ NGA +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAE-----KPAFD 55
Query: 81 KSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVN 140
I + + HG+ + +E GD+V +D+ N Y+ D + T VG + + +
Sbjct: 56 TIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYE 115
Query: 141 VAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTK 200
+ +A A+ KPG + SI + K+
Sbjct: 116 IVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG------------------------ 151
Query: 201 NDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTF 260
LGHG + ++ GM
Sbjct: 152 ----------------------DYFIHSLGHG---VGLEIHEWPRISQYDETVLKEGMVI 186
Query: 261 TIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
TIEP + + E TVL+T +G K LT
Sbjct: 187 TIEP-----------------GIYIPKLGGVRIEDTVLITENGAKRLT 217
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 91.7 bits (226), Expect = 2e-22
Identities = 41/290 (14%), Positives = 90/290 (31%), Gaps = 58/290 (20%)
Query: 20 VKTESQIRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSP-LNYKG 78
+K+ + ++ ++A + E + + E+ + A + ++ A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 79 YPKSICTSVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFL 138
+ +N H +R + GDI++++ + GY+ T + L
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRL 121
Query: 139 VNVAQQALHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFH 198
V + A + ++KPG S +
Sbjct: 122 WQVNVEVHEAGLKLIKPGARC----------------------------SDIARELNEIF 153
Query: 199 TKNDYPGKMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGM 258
K+D G G S+++G + D +EPGM
Sbjct: 154 LKHDVLQYRTFGYGH----------------SFGTLSHYYGREAGLELREDIDTVLEPGM 197
Query: 259 TFTIEPVLTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
++EP++ ML +G + ++V +G + +T
Sbjct: 198 VVSMEPMI--------MLPEGLPGAG-----GYREHDILIVNENGAENIT 234
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 86.3 bits (212), Expect = 1e-20
Identities = 56/283 (19%), Positives = 98/283 (34%), Gaps = 68/283 (24%)
Query: 26 IRLMHESCKLARFVLDCIAEHIKVNMTTNELDVFAHELIINNGAYPSPLNYKGYPKSICT 85
+ ++ ++A+ V + + + M EL ++I+ G P+ +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAAH 62
Query: 86 SVNNVACHGIPDSRPLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQA 145
D+ L++GD + +DV V+++G+ D + T VG + L+ A++A
Sbjct: 63 -----YTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DELMEAAKEA 114
Query: 146 LHAAISVVKPGEYFSTIGSIIENVAKQNKLRVVPEILGHGIGSYFHGAPDIFHTKNDYPG 205
L+AAISV + G +G IEN ++ + + + GH I Y
Sbjct: 115 LNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKL-------------- 160
Query: 206 KMEPGSIIENVAKHNKLRVVPEILGHGIGSYFHGPPDIFHTKNDYPGKMEPGMTFTIEPV 265
G + ++ G F IEP
Sbjct: 161 -------------------------------HAGISIPNIYRPHDNYVLKEGDVFAIEPF 189
Query: 266 LTNGNGQVTMLEDGWTIVTEDDSRTAQFEHTVLVTYDGYKVLT 308
T G + AQFEHT++V D V T
Sbjct: 190 ATIGA---------------RNGIVAQFEHTIIVEKDSVIVTT 217
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId:
29459]}
Length = 332
Score = 28.7 bits (64), Expect = 0.96
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 116 NGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYF---STIGS-----IIE 167
+ G + + D S A+ A+ A +K GE F S +G+ + +
Sbjct: 235 DVLTGVNTVAIRPAKFDRSPTGTGCSARMAVLHAKGQMKAGERFIGKSVLGTEFHCRLDK 294
Query: 168 NVAKQNKLRVVPEILGHG 185
+ K + P I G
Sbjct: 295 VLELGGKPAISPIISGRA 312
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 25.3 bits (55), Expect = 4.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 99 RPLEDGDIVNVDVTVYLNG 117
+E D V +D T ++G
Sbjct: 13 GAVEAEDRVTIDFTGSVDG 31
>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.5 bits (56), Expect = 7.7
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 273 VTMLE-DGWTIVTEDDSRTAQFEHTVLVTYDGYKVLTY 309
+ M+ + + ++ T + YDGYK+LTY
Sbjct: 77 IEMIGIEDGIVEFHRNNETTSCK----YDYDGYKILTY 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.416
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,220,358
Number of extensions: 59191
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 25
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)