RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9914
(383 letters)
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 172 bits (437), Expect = 2e-49
Identities = 64/122 (52%), Positives = 86/122 (70%), Gaps = 6/122 (4%)
Query: 37 DIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKV 96
DIQFW N++S+ GLSVRS+ NVF +++ LY+LDN+ + +I +S + + IE WKI K
Sbjct: 320 DIQFWRNKKSMVGLSVRSILANVFCQIIIFLYLLDNETSWMILVSQGIGLLIEAWKITKA 379
Query: 97 LDISFAAGRKALGFIPIPDFKDKG--SYVESSTKQYDELAFKYLSWALFPLLAGYAVYSL 154
+ + R GFIP +F+DKG S ES TK+YD++AFKYLS+AL PLL YAVYSL
Sbjct: 380 VKVRI---RWR-GFIPYIEFEDKGKLSEYESKTKEYDDIAFKYLSYALVPLLVAYAVYSL 435
Query: 155 LY 156
LY
Sbjct: 436 LY 437
Score = 47.3 bits (113), Expect = 9e-06
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 248 NPDFDNSHALIWKHDNL-------------------KLKNNGSIYLHVYFTKPVSQFGDT 288
NP +S L+W +N +++NNGS+YLHVY T
Sbjct: 69 NPPSLSSLDLVWSEENFDYGNWFDRREITLTITIPKEVQNNGSLYLHVYLGLSGYSLDPT 128
Query: 289 PQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEE 333
+ + +H V L + K + +NLL G++E E
Sbjct: 129 DKGYDSG----KAVHFVFPLTTYLPKKKVKKKNLLGGKSEKEEPE 169
Score = 29.6 bits (67), Expect = 3.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 4 DPYCFQILNFYQTAAI-YKPAVFFNDYWN 31
P + L + A Y P +F N++W
Sbjct: 204 PPAIARYLRVEPSGARWYYPILFVNEFWQ 232
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 100 bits (252), Expect = 1e-24
Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L+DGDIVN+DV V L+GYHGD + TF VGEV K LV V ++AL+ I VKPG
Sbjct: 76 LKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIG 135
Query: 242 TI 243
I
Sbjct: 136 DI 137
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 97.9 bits (245), Expect = 2e-23
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L++GDIVN+DVTV +GYHGD S TF VGE+ K L V ++AL+ I+ VKPG
Sbjct: 86 LKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLG 145
Query: 242 TI 243
I
Sbjct: 146 DI 147
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 92.6 bits (231), Expect = 1e-21
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
G ++DGD+VN+DV+ YL+GYHGD TF VG V + L VA++AL A I VK G
Sbjct: 87 GPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAG 146
Query: 238 EYFSTI 243
+ I
Sbjct: 147 RPLNDI 152
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 91.4 bits (227), Expect = 2e-20
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
LEDGDIVNVDVTVY G HGD + TF VG VD + + LV + L AI++VKPG +
Sbjct: 218 LEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVRYR 277
Query: 242 TI 243
+
Sbjct: 278 EV 279
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 80.3 bits (199), Expect = 3e-17
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEV-DASGKFLVNVAQQALHAAISVVKPG 237
L++GDIV +DV +++GY GD + TF VGEV D K L+ ++AL+A I VKPG
Sbjct: 84 KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPG 143
Query: 238 EYFSTI 243
I
Sbjct: 144 ARLGDI 149
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 73.1 bits (180), Expect = 5e-15
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L+DGD+V +DV +GYH D + TF VG+ + L +A AAI+ VKPG
Sbjct: 71 LKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKPGVTGG 130
Query: 242 TIESDRNPDFDNSHALIWKH 261
+ + ++ +
Sbjct: 131 DV-------DAAAREVLEEG 143
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 71.2 bits (175), Expect = 4e-14
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 180 TSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEY 239
L+DGDIVN+DV V +GYHGD + TF VG++ + L+ +++L+ AI KPG
Sbjct: 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141
Query: 240 FSTI 243
I
Sbjct: 142 IGEI 145
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 68.6 bits (168), Expect = 1e-13
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 176 TFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVK 235
L++GD+V VD+ +GYH D + TF +GE + L ++A AA++ ++
Sbjct: 64 RPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALR 123
Query: 236 PGEYFSTIE 244
PG ++
Sbjct: 124 PGVTAEEVD 132
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 68.7 bits (168), Expect = 5e-13
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 180 TSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
L++GDI+N+DV+ ++GY+GDCS +GEV K + + + L+AAI+++KPG
Sbjct: 124 IPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPG 181
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 54.4 bits (132), Expect = 3e-08
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVNVAQQALHAAISVVKP 236
+GD+V +D+ +++GY D + T VD GK+ LV +++AL AAI VV+P
Sbjct: 69 ERVFPEGDVVKLDLGAHVDGYIADTAVT-----VDLGGKYEDLVEASEEALEAAIEVVRP 123
Query: 237 G 237
G
Sbjct: 124 G 124
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 51.7 bits (125), Expect = 8e-08
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
+E+GD+V +D +GY D + T VGE K + + +A AAI VKPG
Sbjct: 67 SDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPG 126
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 53.2 bits (128), Expect = 9e-08
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 176 TFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVK 235
T L DGD+V +D+ NGY D + TF +G+ + + +A AAI+ ++
Sbjct: 224 TPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIR 283
Query: 236 PGEYFSTI---------ESDRNPDFDNS--HALIWKHD 262
PG + ++ F + H + + D
Sbjct: 284 PGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLD 321
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 45.3 bits (108), Expect = 3e-05
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVNVAQQALHAAISVVKP 236
T L++GD+V +D +++GY D + T VD K+ L+ A++AL+AAI P
Sbjct: 68 DTVLKEGDVVKLDFGAHVDGYIADSAFT-----VDFDPKYDDLLEAAKEALNAAIKEAGP 122
Query: 237 G 237
Sbjct: 123 D 123
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 41.6 bits (97), Expect = 3e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L +GDIV +D+ V LNG D + T+ VG+V + L+ VA+ AL+ I G
Sbjct: 85 LTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVG 144
Query: 242 TI 243
I
Sbjct: 145 DI 146
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 41.3 bits (97), Expect = 4e-04
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 180 TSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
T +DGD+V +D+ +++GY D + T ++ LV A+ AL+ AI ++ G
Sbjct: 73 TVFKDGDVVKLDLGAHVDGYIADTAITV---DLGDQYDNLVKAAKDALYTAIKEIRAG 127
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 36.0 bits (83), Expect = 0.030
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA---SGKF--LVNVAQQALHAAISVVKP 236
L++GD+V +D+ +++G+ + TF VG +G+ ++ A A AA+ +VKP
Sbjct: 101 LKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKP 160
Query: 237 G 237
G
Sbjct: 161 G 161
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 34.5 bits (80), Expect = 0.058
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF------LVNVAQQALHAAISVVK 235
L+DGD+V +D GY D + TF +GKF L A AAI+ K
Sbjct: 70 LKDGDLVLIDAGAEYGGYASDITRTF-----PVNGKFTDEQRELYEAVLAAQKAAIAACK 124
Query: 236 PG 237
PG
Sbjct: 125 PG 126
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 35.0 bits (80), Expect = 0.062
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGE 238
TT + GD++ D + + GY D + TF +GE D + + + + +S+V PG
Sbjct: 249 TTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGV 308
Query: 239 YFSTIESDRNPDFDNSHALIWK 260
+ FD++ A+I
Sbjct: 309 KLKAV-------FDSTMAVIKT 323
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 34.2 bits (79), Expect = 0.068
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF-----LVNVAQQALHAAISV 233
T +L+DGD+V +D+ +++GY + T VG + ++ A AL AA+ +
Sbjct: 80 TYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRL 139
Query: 234 VKPG 237
++PG
Sbjct: 140 LRPG 143
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 34.3 bits (79), Expect = 0.11
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 180 TSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF------LVNVAQQALHAAISV 233
+ + DGD+V +D GY GD + TF V +GKF + ++ ++L ++ +
Sbjct: 247 SEMRDGDLVLIDAGCEYKGYAGDITRTFPV-----NGKFTPAQREIYDIVLESLETSLRL 301
Query: 234 VKPG 237
+PG
Sbjct: 302 YRPG 305
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 32.0 bits (72), Expect = 0.46
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 185 GDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG-----EY 239
GD++ D V ++GY D + TF VGE + + + +S+V PG +
Sbjct: 173 GDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVF 232
Query: 240 FSTIESDRN---PDFDNSH 255
ST+E + P+++ H
Sbjct: 233 DSTMEVIKKSGLPNYNRGH 251
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 32.0 bits (72), Expect = 0.59
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 185 GDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG-----EY 239
GD++ D V ++GY D + TF VGE + + + +S+V PG +
Sbjct: 256 GDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVF 315
Query: 240 FSTIESDRN---PDFDNSH 255
ST+E + P+++ H
Sbjct: 316 DSTMEVIKKSGLPNYNRGH 334
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 31.5 bits (72), Expect = 0.71
Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 24/167 (14%)
Query: 35 IIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKIN 94
++D F+ R + L+ + F + ++ L L + LI + + G E K
Sbjct: 16 LVDT-FFLGRLLGDALAAVGLAFPLIALLIALGVGLSVGTSALISQA--IGAGDEE-KAR 71
Query: 95 KVLD----ISFAAGR--KALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLA- 147
+VL ++ G AL P E ELA YL+ + L
Sbjct: 72 RVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEE----VIELAATYLTILILGLPIT 127
Query: 148 --GYAVYSLLYLEHKGWY-------SWVLNMLYGFLLTFGTTSLEDG 185
G + +L E S +LN+L LL FG E G
Sbjct: 128 FLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELG 174
>gnl|CDD|237430 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional.
Length = 381
Score = 31.2 bits (71), Expect = 0.80
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 317 QRTQNLLTGQTEASLEEIKRWIYKID 342
+RT LL T A+L ++K W+ ++D
Sbjct: 119 KRTNTLLIRDTPAALAQLKNWLIELD 144
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B
subunit, eIF-2B alpha/beta/delta family [Translation,
ribosomal structure and biogenesis].
Length = 346
Score = 31.1 bits (71), Expect = 0.97
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 324 TGQTEASLEEIKRWIYKI-------DPTRVNEFGYSAAMENNAESSNAVDSNKE---QQA 373
+ ++ EE + K PT VN F M N A+ + V KE Q+A
Sbjct: 66 ESKNDSKGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAIEVKEPKESILQEA 125
Query: 374 IKSAEE 379
+ AEE
Sbjct: 126 EEIAEE 131
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 30.7 bits (69), Expect = 1.2
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF--LVNVAQ---QALHAAISVVKP 236
+ G+ V +D GY D + T V S + L NV Q QA AAIS ++P
Sbjct: 203 VAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRP 262
Query: 237 G 237
G
Sbjct: 263 G 263
>gnl|CDD|218466 pfam05145, AmoA, Putative ammonia monooxygenase. This family are
annotated by COGS as putative ammonia monooxygenase
enzymes.
Length = 318
Score = 30.0 bits (68), Expect = 1.9
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 140 WALFPLLAGYAVYSLLYLEHKGWYSWVLNMLYGFL 174
W L PLL G AV L W+L + +
Sbjct: 180 WLLGPLLVG-AVVHLGTGLTIQLPKWLLAVAQALI 213
>gnl|CDD|235016 PRK02237, PRK02237, hypothetical protein; Provisional.
Length = 109
Score = 28.3 bits (64), Expect = 2.4
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 141 ALFPLLAGYAVYSLLYL-EHKGWY----SWVLNMLYGFLLTF 177
AL + Y + L+L E K + + L+G+LLT
Sbjct: 13 ALAEIGGCYLPW--LWLREGKSAWWLLPGALSLALFGWLLTL 52
>gnl|CDD|233905 TIGR02515, IV_pilus_PilQ, type IV pilus secretin (or competence
protein) PilQ. A number of proteins homologous to PilQ
are involved in type IV pilus formation, competence for
transformation, type III secretion, and type II
secretion (also called the main terminal branch of the
general secretion pathway). Members of this family
include PilQ itself, which is a component of the type IV
pilus structure, from a number of species. In
Haemophilus influenzae, the member of this family is
associated with competence for transformation with
exogenous DNA rather than with formation of a type IV
pilus; the surface structure required for competence may
be considered an unusual, incomplete type IV pilus
structure [Cell envelope, Surface structures].
Length = 418
Score = 29.2 bits (66), Expect = 4.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 317 QRTQNLLTGQTEASLEEIKRWIYKID 342
RT L+ +L I++ I ++D
Sbjct: 137 PRTNTLIVTDIPENLARIRKLIAELD 162
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 29.3 bits (66), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 262 DNLKLKNN--GSIYLHVYFTKPVSQFGDTPQSL 292
+++K N G+ YL VY+ P+ G T Q+L
Sbjct: 123 ARVEIKKNDDGTEYLAVYYAGPIRSAGGTAQAL 155
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 28.8 bits (65), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 302 IHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEI 334
+H VK+LN + R + L E S EEI
Sbjct: 166 VHVVKELNVYLRAARELEHKL---DHEPSAEEI 195
>gnl|CDD|217786 pfam03907, Spo7, Spo7-like protein. S. cerevisiae Spo7 has an
unknown function, but has a role in formation of a
spherical nucleus and meiotic division.
Length = 168
Score = 27.3 bits (61), Expect = 8.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 124 ESSTKQYDELAFKYLSWALF-PLLAGYAVYS--LLYLEHKGWYSWVLNMLYGFLLTFGTT 180
S +QY +L + + F LLAG A + LY ++ M F L FG
Sbjct: 15 ASLRRQYLQLRARRRQFTFFLSLLAGIAAFFFYELYFRPSEDSKGLVRMTLKFCLIFGVV 74
Query: 181 SL 182
+L
Sbjct: 75 TL 76
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 28.3 bits (63), Expect = 8.9
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 25/76 (32%)
Query: 223 AQQALHAAISVVKPG------EYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHV 276
A+QA+ A++++ G E + ++ RN D GS YL +
Sbjct: 101 AEQAVRTALAILTEGIVAAPLEGIADVKIKRNED-------------------GSEYLAI 141
Query: 277 YFTKPVSQFGDTPQSL 292
Y+ P+ G T Q+L
Sbjct: 142 YYAGPIRSAGGTAQAL 157
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 27.7 bits (62), Expect = 9.7
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 203 CSATFCVGEV--------DASGKFLVNVAQQALHAAISVVKPG 237
CS T + +A L + ++ L AA +VKPG
Sbjct: 165 CSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPG 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,367,064
Number of extensions: 1853975
Number of successful extensions: 1633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 55
Length of query: 383
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 284
Effective length of database: 6,546,556
Effective search space: 1859221904
Effective search space used: 1859221904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)