RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9914
(383 letters)
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 111 bits (281), Expect = 1e-28
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
+T + DGDIVN+DVT Y+ G HGD +ATF G+V + LV+ ++A AI+ VKPG
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPG 177
Query: 238 EYFSTI 243
S I
Sbjct: 178 RALSVI 183
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 110 bits (277), Expect = 1e-27
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
L++GDIVNVD+T+Y NGYHGD + TF VGEVD + LV + L AI VKPG
Sbjct: 152 DRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPG 211
Query: 238 EYFSTI 243
+ +
Sbjct: 212 VRYREL 217
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 106 bits (266), Expect = 6e-26
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDAS---GKFLVNVAQQALHAAISVV 234
L+ GDI+N+D++V+ G H D + T+ VG+++ GK LV +L AI
Sbjct: 180 DYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKC 239
Query: 235 KPGEYFSTI 243
KPG ++ I
Sbjct: 240 KPGMFYKNI 248
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 100 bits (251), Expect = 1e-24
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L+DGDIVN+DVTV +G+HGD S F VG+ G+ L + Q++L+ A+ +VKPG
Sbjct: 87 LKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLR 146
Query: 242 TI 243
I
Sbjct: 147 EI 148
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 100 bits (251), Expect = 1e-24
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L++GDIVN+DVTV L+G++GD S + VG+V K L+ V A+ I VV+PG
Sbjct: 89 LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLG 148
Query: 242 TI 243
I
Sbjct: 149 DI 150
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 93.7 bits (234), Expect = 3e-22
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDA-SGKFLVNVAQQALHAAISVVKPGEYF 240
+ +GD+VN+DV+ NGY+ D +F VGE D + + +VA A AI+ VKPG
Sbjct: 84 IREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKL 143
Query: 241 STI 243
S I
Sbjct: 144 SNI 146
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 90.6 bits (226), Expect = 4e-21
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
++GDIV+VDV G +GD + T+ VGE D GK LV V ++ L AI ++KPG
Sbjct: 98 FKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLG 157
Query: 242 TI 243
+
Sbjct: 158 DV 159
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 90.3 bits (225), Expect = 7e-21
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L+DGD++ VD+ V L G D ++ VGE L+ V ++AL+ I + G
Sbjct: 85 LKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKALYLGIEQAQVGNRIG 144
Query: 242 TI 243
I
Sbjct: 145 DI 146
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 90.3 bits (225), Expect = 9e-21
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L DGD+V++D L+G+HGD + TF VG V S + L + ++ A I+ + PG +
Sbjct: 116 LADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSMEAGIAAMIPGNRLT 175
Query: 242 TI 243
+
Sbjct: 176 DV 177
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 74.4 bits (183), Expect = 8e-15
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVG-----EVDASGKFLVNVAQQALHAAIS 232
L++GD+V +D+ V+++G+ + + TF V +V ++ A AA+
Sbjct: 103 QDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALR 162
Query: 233 VVKPGEYFSTI 243
+VKPG + +
Sbjct: 163 LVKPGNQNTQV 173
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 71.5 bits (176), Expect = 3e-14
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
TT L++GD + +DV V+++G+ D + T VG + L+ A++AL+AAISV + G
Sbjct: 69 DTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKEALNAAISVARAG 125
Query: 238 EYFSTI 243
+
Sbjct: 126 VEIKEL 131
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 62.1 bits (151), Expect = 7e-11
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
L++ D++ +D + +G D + T E L+ A++ I +
Sbjct: 119 QDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLEP---LLVAAREGTETGIKSLGVD 175
Query: 238 EYFSTI 243
I
Sbjct: 176 VRVCDI 181
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 60.3 bits (146), Expect = 3e-10
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 179 TTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
TT L+ DI +D +++G DC+ T + L+ + A + I
Sbjct: 239 TTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDT---LLKAVKDATNTGIKCAGID 294
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 57.7 bits (140), Expect = 2e-09
Identities = 10/63 (15%), Positives = 26/63 (41%)
Query: 175 LTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVV 234
+Z GDI++++ + GY+ T + ZVB + + + ++
Sbjct: 232 NPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLI 291
Query: 235 KPG 237
KPG
Sbjct: 292 KPG 294
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 57.3 bits (139), Expect = 2e-09
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
T + GDI++++ + GY+ T + L V + A + ++KPG
Sbjct: 235 TTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPG 294
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 56.1 bits (136), Expect = 5e-09
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
G + GDI+ +D GY D + T +GE+D + V + A +A V+ G
Sbjct: 202 GERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREG 261
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 55.7 bits (135), Expect = 7e-09
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
+E GD+V +D+ Y+ D + T VG + K + + +A A+ KPG
Sbjct: 199 SDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPG 258
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 54.5 bits (132), Expect = 2e-08
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
+E GD V +D Y GY D + T VGE K + N+ +A ++ +K G
Sbjct: 202 SEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAG 261
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 54.2 bits (131), Expect = 2e-08
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
+E GD++ +D Y D + +GE K + ++ +A A+ + K G
Sbjct: 205 SDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAG 264
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 53.8 bits (130), Expect = 3e-08
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 178 GTTSLEDGDIVNVDV-TVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKP 236
L+ GDIV VD+ Y GY+ D + T+ +G+ + Q+A AA+ V+P
Sbjct: 221 SDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRP 280
Query: 237 G 237
G
Sbjct: 281 G 281
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 51.1 bits (122), Expect = 3e-07
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 176 TFGTTSLEDGDIVNVDV-TVYLNGYHGDCSATFCVGEVDASGK--FLVNVAQQALHAAIS 232
G + +I++ D V G D S ++ +G+ + + + + +
Sbjct: 303 ECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNME 362
Query: 233 VVKPG 237
++KPG
Sbjct: 363 MLKPG 367
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 8e-06
Identities = 50/323 (15%), Positives = 85/323 (26%), Gaps = 116/323 (35%)
Query: 47 LEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKVLDISFAAGRK 106
++ S R + L + + + V + I L F
Sbjct: 1 MDAYSTRPL-------------TLSHGS---LEHVLLVPTA--SFFIASQLQEQFNKI-- 40
Query: 107 ALGFIPIPDFKDKGSYVESSTKQYDELAFKYLSWALFPLLAGYAVYSLLYLEHKGWYSWV 166
+P P ++ EL K+L GY V SL+ G + V
Sbjct: 41 ----LPEPTEGFAADDEPTTPA---ELVGKFL---------GY-VSSLVEPSKVGQFDQV 83
Query: 167 LNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQA 226
LN+ L F LE DI H L+
Sbjct: 84 LNLC---LTEFENCYLEGNDI------------H-----ALAAK--------LLQENDTT 115
Query: 227 LHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKHDNLKLKNNGSIYLHVYFTKPVSQFG 286
L ++K Y + + P S++ +++ + N + FG
Sbjct: 116 LVKTKELIK--NYITARIMAKRPFDKKSNSALFRAVG---EGNAQLVA---------IFG 161
Query: 287 DTPQSLKTKLTATTTIHGVKQLNKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRV 346
G Q G T+ EE+ R +Y+ V
Sbjct: 162 -----------------G---------------Q----GNTDDYFEEL-RDLYQTYHVLV 184
Query: 347 NEFGYSAAMENNAESSNAVDSNK 369
+ +A + +D+ K
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEK 207
Score = 32.3 bits (73), Expect = 0.31
Identities = 54/293 (18%), Positives = 83/293 (28%), Gaps = 123/293 (41%)
Query: 11 LNFYQTAAIYKPAVFFNDYWNHAAIIDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVL 70
++ Y+T+ + D WN A D F + G S+ + V+
Sbjct: 1633 MDLYKTSKAAQ------DVWNRA---DNHFKDT----YGFSILDI-------------VI 1666
Query: 71 DNDANTLIRISCFVSVGIELWKINKVLDISFAA--GRK------ALGFIPIPDFKDKGSY 122
+N L I F G++ A+ F I D K K
Sbjct: 1667 NNP---------------------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK--- 1702
Query: 123 VESSTKQYDELAFKYLSW---------------ALFPLLAGYAVYSLLYLEHKGWYSWVL 167
E K+ +E + Y ++ AL L A + L+ KG
Sbjct: 1703 TEKIFKEINEHSTSY-TFRSEKGLLSATQFTQPALT--LMEKAAFED--LKSKGLIPADA 1757
Query: 168 NM----L--YGFLLTF-GTTSLED--------GDIVNVDVTVYLNGY---------HGDC 203
L Y L + S+E G + V V G G
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 204 SATFC-------VGEVDASGKFLVNVA------QQ--------ALHAAISVVK 235
+A+F V V +LV + QQ AL +V+
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 41.5 bits (97), Expect = 3e-04
Identities = 6/60 (10%), Positives = 13/60 (21%), Gaps = 1/60 (1%)
Query: 178 GTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPG 237
GD+V + Y + T+ + + + G
Sbjct: 271 TDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQ-QKNYSFLVALQKKLFEYCRDG 329
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 37.8 bits (88), Expect = 0.005
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF----LVNVAQQALHAAISVVKPG 237
+D NGY D + T+ +G+ LV +Q A ++ + PG
Sbjct: 235 PATHRSFLIDAGANFNGYAADITRTYDF-----TGEGEFAELVATMKQHQIALMNQLAPG 289
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 36.9 bits (85), Expect = 0.009
Identities = 8/62 (12%), Positives = 19/62 (30%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
L + + N Y + + TF + + + +++KPG
Sbjct: 282 LYGNGCILASCGIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPK 341
Query: 242 TI 243
+
Sbjct: 342 EV 343
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 36.7 bits (85), Expect = 0.012
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 171 YGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF---------LVN 221
YG ++++GD+ D+ + D + +F +GKF V
Sbjct: 257 YGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPA-----NGKFTADQKAVYEAVL 311
Query: 222 VAQQALHAAISVVKPGEYFSTI 243
+ + A + +KPG ++ +
Sbjct: 312 RSSR---AVMGAMKPGVWWPDM 330
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 35.7 bits (83), Expect = 0.020
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 17/71 (23%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF---------LVNVAQQALHAAIS 232
+ DGD+V +D GY GD + TF V +GKF +V + + ++
Sbjct: 251 MRDGDLVLIDAGCEYKGYAGDITRTFPV-----NGKFTQAQREIYDIVLESLE---TSLR 302
Query: 233 VVKPGEYFSTI 243
+ +PG +
Sbjct: 303 LYRPGTSILEV 313
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 35.4 bits (82), Expect = 0.031
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF-------LVNVAQQALHAAISVV 234
++ +D +GY D + T+ G L+ + + +
Sbjct: 235 PKESRSFLIDAGANYHGYAADITRTYAQ-----EGVHNSAMFRDLIQAVDKVTLTLVDSL 289
Query: 235 KPG 237
KPG
Sbjct: 290 KPG 292
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 34.9 bits (81), Expect = 0.041
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF---------LVNVAQQALHAAIS 232
+++GD+V +D+ + Y+ D S TF +G F +V A +
Sbjct: 247 IQNGDLVLLDLGAQKDYYNADISYTFPA-----NGTFSSRQKQIYNIVLNALK---ETTE 298
Query: 233 VVKPGEYFSTI 243
++KPG F+ +
Sbjct: 299 IIKPGLKFAAL 309
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling,
liquid crystal, PF1, RECA, protein binding; NMR
{Escherichia coli} SCOP: d.57.1.1
Length = 81
Score = 27.8 bits (62), Expect = 1.3
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 314 LKFQRTQNLLTGQTEASLEEIKRWIYKIDPTRVNEFGYSAAMENNAESSNAVDSNKEQ 371
+ +T L G +A E+ R I P A NN A +K++
Sbjct: 5 VTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKQR 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 1.5
Identities = 38/250 (15%), Positives = 69/250 (27%), Gaps = 93/250 (37%)
Query: 17 AAIYKPAVFFNDYWNH------AAIIDIQFWNNRQSLEGLS---VRSVF--FNVFQ---- 61
A + + D W H II+ SL L R +F +VF
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIES-------SLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 62 ---SVVVLL------YVLDNDANTLIRISCFVSVGIELW-------------KINKVLDI 99
++ L+ + N L + S +E ++ L+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELKVKLEN 441
Query: 100 SFAAGRKALGFIPIPDFKDKGSYVESSTKQYDELAFKYLS-----------WALFPLL-- 146
+A R + IP D + QY + ++ LF ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 147 --------------AGYAVYSLL--------YLEH----KGWYSWVLNMLYGFLLTFGTT 180
A A S+L Y + Y ++N + FL
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 181 SL--EDGDIV 188
+ + D++
Sbjct: 559 LICSKYTDLL 568
Score = 28.7 bits (63), Expect = 3.8
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 32/147 (21%)
Query: 244 ESDRNPDFDNSHALIWKHDNLKLKNNGSIY--LHVYFTKPVSQFGDTPQSLKTKLT---- 297
R P + I + D +L N+ ++ +V +P + L+ L
Sbjct: 100 TEQRQPS-MMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLK-------LRQALLELRP 149
Query: 298 -ATTTIHGV----KQ---LNKFKRLKFQRTQN-----LLTGQ---TEASLEEIKRWIYKI 341
I GV K L+ K Q + L E LE +++ +Y+I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 342 DPTRVNEFGYSAAMENNAESSNAVDSN 368
DP + +S+ ++ S A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRR 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.0
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 118 DKGSY--VESSTKQY-DELAFKYLSWALFPLLA 147
+K + +++S K Y D+ A P LA
Sbjct: 18 EKQALKKLQASLKLYADDSA---------PALA 41
>3o59_X DNA polymerase II large subunit; alpha helical structure,
transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Length = 300
Score = 28.5 bits (63), Expect = 3.5
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 24/106 (22%)
Query: 196 LNGYHGDCSATFCVGEVDASGKF-----LVNVAQQALHAAISVVKPGEYFSTIESDRNPD 250
L +G A + + GKF A+QA+ A++++ G + IE
Sbjct: 70 LVKEYGKEIAALKIVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGVVSAPIEG----- 124
Query: 251 FDNSHALIWKHDNLKLKNN----GSIYLHVYFTKPVSQFGDTPQSL 292
++K+K N S YL +Y+ P+ G T Q+L
Sbjct: 125 ----------IASVKIKRNTWSDNSEYLALYYAGPIRSSGGTAQAL 160
>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
{Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
1z0g_A 1z0t_A 1z0v_A
Length = 207
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 185 GDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVK--PGEYFS 241
G ++ + V + + G V A+G+ L +A++A+ +++K G S
Sbjct: 26 GIVLPIIAEVTPSMSKSE-------GRVIATGR-LQEIAREAVMNVSAIIKKYTGRDIS 76
>3ezj_A General secretion pathway protein GSPD; general secretory pathway,
secretin, single chain antibody, transport, immune
system, complex; 2.80A {Escherichia coli}
Length = 241
Score = 27.4 bits (60), Expect = 8.2
Identities = 7/34 (20%), Positives = 20/34 (58%)
Query: 309 NKFKRLKFQRTQNLLTGQTEASLEEIKRWIYKID 342
K + + +RT +++ A+ ++++R I ++D
Sbjct: 206 LKSQIVADERTNSVIVSGDPATRDKMRRLIRRLD 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,831,190
Number of extensions: 341584
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 41
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)