RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9914
         (383 letters)



>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
           coli [TaxId: 562]}
          Length = 262

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 182 LEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFS 241
           L+DGDIVN+DVTV  +G+HGD S  F VG+    G+ L  + Q++L+ A+ +VKPG    
Sbjct: 86  LKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLR 145

Query: 242 TI 243
            I
Sbjct: 146 EI 147


>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 221

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 186 DIVNVDVTVYLNGYHGDCSATFCVGEVDASGKFLVNVAQQALHAAISVVKPGEYFSTIES 245
           D+V +D+    N Y+ D + T  VG  +   + +  +  +A   A+   KPG     ++S
Sbjct: 80  DLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDS 139

Query: 246 DRNPDFDNSH 255
                     
Sbjct: 140 IAREIIKEYG 149


>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 249

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 29/103 (28%), Positives = 46/103 (44%)

Query: 159 HKGWYSWVLNMLYGFLLTFGTTSLEDGDIVNVDVTVYLNGYHGDCSATFCVGEVDASGKF 218
           +K      +N      L       ++GDIV+VDV     G +GD + T+ VGE D  GK 
Sbjct: 63  YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 122

Query: 219 LVNVAQQALHAAISVVKPGEYFSTIESDRNPDFDNSHALIWKH 261
           LV V ++ L  AI ++KPG     +        ++    + + 
Sbjct: 123 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRD 165


>d2i8ga1 d.107.1.4 (A:2-148) Hypothetical protein DIP2269
           {Corynebacterium diphtheriae [TaxId: 1717]}
          Length = 147

 Score = 26.4 bits (58), Expect = 3.2
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 268 NNGSIYLHVYFTKPVSQFGDTPQSLKTKLTATTTIHGVK 306
             G++Y        V  + +  QSLK +L A   I  + 
Sbjct: 108 EEGAVYAVQKGPVAVVVWSNQQQSLKAELMAKEAIARLG 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,439,707
Number of extensions: 66586
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 5
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)