BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9915
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 30/202 (14%)
Query: 3 CMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTF--QKGELKM--F 57
C+ F RS PA P + R Q+N ++S++DAS+VYG+ E LA LR Q G L +
Sbjct: 31 CIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQR 90
Query: 58 ITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLA 117
+GR LLP D C ++A+ CF++GD R++E LTSMH LL R+HN LA
Sbjct: 91 FQDNGRALLPFDNLHDDPCLLTNRSARIP-CFLAGDTRSSEMPELTSMHTLLLREHNRLA 149
Query: 118 RQLVTLNPDWDDETVYQESRRILGAQMQHVTSGYSNDYKP-------------------- 157
+L +LNP WD E +YQE+R+I+GA +Q +T DY P
Sbjct: 150 TELKSLNPRWDGERLYQEARKIVGAMVQIIT---YRDYLPLVLGPTAMRKYLPTYRSYND 206
Query: 158 DVDPTVSNNFATSAFRFAHTLI 179
VDP ++N F T+AFR+ HTLI
Sbjct: 207 SVDPRIANVF-TNAFRYGHTLI 227
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 30/202 (14%)
Query: 3 CMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTF--QKGELKM--F 57
C+ F RS PA P + R Q+N ++S++DAS+VYG+ E LA LR Q G L +
Sbjct: 31 CIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQR 90
Query: 58 ITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLA 117
+GR LLP D C ++A+ CF++GD R++E LTSMH LL R+HN LA
Sbjct: 91 FQDNGRALLPFDNLHDDPCLLTNRSARIP-CFLAGDTRSSEMPELTSMHTLLLREHNRLA 149
Query: 118 RQLVTLNPDWDDETVYQESRRILGAQMQHVTSGYSNDYKP-------------------- 157
+L +LNP WD E +YQE+R+I+GA +Q +T DY P
Sbjct: 150 TELKSLNPRWDGERLYQEARKIVGAMVQIIT---YRDYLPLVLGPTAMRKYLPTYRSYND 206
Query: 158 DVDPTVSNNFATSAFRFAHTLI 179
VDP ++N F T+AFR+ HTLI
Sbjct: 207 SVDPRIANVF-TNAFRYGHTLI 227
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 30/202 (14%)
Query: 3 CMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTF--QKGELKM--F 57
C+ F RS PA P + R Q+N ++S++DAS+VYG+ E LA LR Q G L +
Sbjct: 31 CIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQR 90
Query: 58 ITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLA 117
+GR LLP D C ++A+ CF++GD R++E LTSMH LL R+HN LA
Sbjct: 91 FQDNGRALLPFDNLHDDPCLLTNRSARIP-CFLAGDTRSSEMPELTSMHTLLLREHNRLA 149
Query: 118 RQLVTLNPDWDDETVYQESRRILGAQMQHVTSGYSNDYKP-------------------- 157
+L +LNP WD E +YQE+R+I+GA +Q +T DY P
Sbjct: 150 TELKSLNPRWDGERLYQEARKIVGAMVQIIT---YRDYLPLVLGPTAMRKYLPTYRSYND 206
Query: 158 DVDPTVSNNFATSAFRFAHTLI 179
VDP ++N F T+AFR+ HTLI
Sbjct: 207 SVDPRIANVF-TNAFRYGHTLI 227
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P R+Q+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G P + C A+ CF +GD+RA+E L ++H LL R+HN
Sbjct: 217 QEAWDHGLAYPPFNNMKPSPCEFINTTARVP-CFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPRYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P R+Q+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G P + C A+ CF +GD+RA+E L ++H LL R+HN
Sbjct: 217 QEAWDHGLAYPPFNNMKPSPCEFINTTARVP-CFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPRYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P R+Q+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G P + C A CF +GD+RA+E L ++H LL R+HN
Sbjct: 217 QEAWDHGLAYPPFNNVKPSPCEFINTTAHVP-CFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P R+Q+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G P + C A CF +GD+RA+E L ++H LL R+HN
Sbjct: 217 QEAWDHGLAYPPFNNVKPSPCEFINTTAHVP-CFQAGDSRASEQILLATVHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 145 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVN 204
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 205 QEAWDHGLAYLPFNNKKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 263
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP W+ E +YQE+R+ILGA +Q +T GY+N
Sbjct: 264 LARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 321
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 322 --SVDPRISNVF-TFAFRFGHMEVP 343
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 217 QEAWDHGLAYLPFNNKKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP W+ E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 217 QEAWDHGLAYLPFNNKKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP W+ E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 145 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVN 204
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 205 QEAWDHGLAYLPFNNKKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 263
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP W+ E +YQE+R+ILGA +Q +T GY+N
Sbjct: 264 LARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 321
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 322 --SVDPRISNVF-TFAFRFGHMEVP 343
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 217 QEAWDHGLAYLPFNNKKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP W+ E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RL+ M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 217 QEAWDHGLAYLPFNNRKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 105/205 (51%), Gaps = 33/205 (16%)
Query: 3 CMEFIRSS---PAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
CM F R+ P P REQ+N V+S+LDAS+VYG+ LA+RL+ M +
Sbjct: 157 CMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVN 216
Query: 60 PD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+ G LP + C A+ CF++GD RA+E L + H LL R+HN
Sbjct: 217 QEAWDHGLAYLPFNNRKPSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNR 275
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT--------------------SGYSNDY 155
LAR+L LNP WD E +YQE+R+ILGA +Q +T GY+N
Sbjct: 276 LARELKKLNPQWDGEKLYQEARKILGAFVQIITFRDYLPIVLGSEMQKWIPPYQGYNN-- 333
Query: 156 KPDVDPTVSNNFATSAFRFAHTLIP 180
VDP +SN F T AFRF H +P
Sbjct: 334 --SVDPRISNVF-TFAFRFGHMEVP 355
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 254
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 255 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 314
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 315 EDYVQHL-SGYH--FKLKFDPELLFN 337
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 259
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 260 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 319
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 320 EDYVQHL-SGYH--FKLKFDPELLFN 342
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 254
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 255 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 314
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 315 EDYVQHL-SGYH--FKLKFDPELLFN 337
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 203 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 260
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 261 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 320
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 321 EDYVQHL-SGYH--FKLKFDPELLFN 343
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 258
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 259 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 318
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 319 EDYVQHL-SGYH--FKLKFDPELLFN 341
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 259
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 260 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 319
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 320 EDYVQHL-SGYH--FKLKFDPELLFN 342
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 254
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 255 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 314
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 315 EDYVQHL-SGYH--FKLKFDPELLFN 337
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 258
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 259 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 318
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 319 EDYVQHL-SGYH--FKLKFDPELLFN 341
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 214 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 271
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 272 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 331
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 332 EDYVQHL-SGYH--FKLKFDPELLFN 354
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 220 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 277
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+HN + L +P+W DE ++Q SR IL +
Sbjct: 278 AVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVI 337
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 338 EDYVQHL-SGYH--FKLKFDPELLFN 360
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 228 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 287
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 288 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 338
Query: 142 AQMQHVTSGYSN 153
++ V Y+
Sbjct: 339 ETIKIVIEEYAQ 350
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 208 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 267
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 268 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 318
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 319 ETIKIVIEEY 328
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 228 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 287
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 288 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 338
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 339 ETIKIVIEEY 348
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 204 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 263
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 264 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 314
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 315 ETIKIVIEEY 324
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 204 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 263
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 264 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 314
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 315 ETIKIVIEEY 324
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 197 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 256
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 257 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 307
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 308 ETIKIVIEEY 317
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 197 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 256
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 257 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 307
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 308 ETIKIVIEEY 317
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 196 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 255
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 256 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 306
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 307 ETIKIVIEEY 316
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 196 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 255
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 256 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 306
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 307 ETIKIVIEEY 316
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 197 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 256
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+HN + L +P W DE ++Q +R IL G
Sbjct: 257 GQEVFGLLPG---------LMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIG 307
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 308 ETIKIVIEEY 317
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 254
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+H + L +P+W DE ++Q S+ IL +
Sbjct: 255 AVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVI 314
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 315 EDYVQHL-SGYH--FKLKFDPELLFN 337
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 14/146 (9%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCF 89
+D + +YG T + ++LR F+ G+LK + G E+ P + + F
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVI--GGEVYPPTVKDTQVEMIYPPHIPENLQF 254
Query: 90 MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQ------ 143
G L + R+H + L +P+W DE ++Q S+ IL +
Sbjct: 255 AVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVI 314
Query: 144 ---MQHVTSGYSNDYKPDVDPTVSNN 166
+QH+ SGY +K DP + N
Sbjct: 315 EDYVQHL-SGYH--FKLKFDPELLFN 337
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 30 LDASVVYGNTEELANRLRTFQKGELKM-----FITPDGRELLPVSTDPLDGCNEKQQNAQ 84
+D +YG+ E +LR F+ G+LK + P E PV G + Q A
Sbjct: 196 VDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAV 255
Query: 85 GRYCF--MSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRIL-G 141
G+ F + G L + R+H + L +P W DE ++Q ++ IL G
Sbjct: 256 GQEVFGLLPG---------LMLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIG 306
Query: 142 AQMQHVTSGY 151
++ V Y
Sbjct: 307 ETIKIVIEEY 316
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 32.3 bits (72), Expect = 0.18, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 24 NQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNA 83
N + + D+SV+YG+ + +R+RT++ G+LK+ + LL D L
Sbjct: 225 NIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKI---SEETGLLLHDEDGLA--------- 272
Query: 84 QGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGA 142
+SGD R N ++++ L ++HN + L + D +DE +Y+ +R + A
Sbjct: 273 ------ISGDIR-NSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSA 324
>pdb|2LIE|A Chain A, Nmr Structure Of The Lectin Ccl2
pdb|2LIQ|A Chain A, Solution Structure Of Ccl2 In Complex With Glycan
Length = 153
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 51 KGELKMFITPDGRELLPVSTDPLDGCNEK 79
+GE K+ +T GR+ PV+ PLDG +E+
Sbjct: 34 RGE-KLALTYPGRQRTPVTVSPLDGSSEQ 61
>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8J|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
Length = 554
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 25 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 82
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 364 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 423
Query: 83 AQGRYC 88
+G+ C
Sbjct: 424 LRGKSC 429
>pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna
pdb|3MFI|A Chain A, Dna Polymerase Eta In Complex With A Cis-Syn Thymidine
Dimer
pdb|3OHA|A Chain A, Yeast Dna Polymerase Eta Inserting Dctp Opposite An 8oxog
Lesion
pdb|3OHB|A Chain A, Yeast Dna Polymerase Eta Extending From An 8-Oxog Lesion
Length = 520
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 25 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 82
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 348 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 407
Query: 83 AQGRYC 88
+G+ C
Sbjct: 408 LRGKSC 413
>pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2WTF|B Chain B, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2XGP|A Chain A, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGP|B Chain B, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGQ|A Chain A, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
pdb|2XGQ|B Chain B, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
Length = 536
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 25 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 82
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 364 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 423
Query: 83 AQGRYC 88
+G+ C
Sbjct: 424 LRGKSC 429
>pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
Length = 513
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 25 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 82
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 341 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 400
Query: 83 AQGRYC 88
+G+ C
Sbjct: 401 LRGKSC 406
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 96 ANENTHLTSMHLLLARQHNTLARQLVTLN---PDWDDETVYQESRRILGAQMQHVTSGY 151
A E L HLLLA H L LVT+N W D+ + E+R L + + +GY
Sbjct: 293 AQEIHELGGTHLLLAEDHRNLP-DLVTVNHLDGIWTDD-FHHETRVTLTGEQEGYYAGY 349
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 96 ANENTHLTSMHLLLARQHNTLARQLVTLN---PDWDDETVYQESRRILGAQMQHVTSGY 151
A E L HLLLA H L LVT+N W D+ + E+R L + + +GY
Sbjct: 293 AQEIHELGGTHLLLAEDHRNLP-DLVTVNHLDGIWTDD-FHHETRVTLTGEQEGYYAGY 349
>pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|2PGI|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
Length = 445
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 37 GNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARA 96
G T E A R F+ K + + R+ + V+TD G +K + +G F+ D
Sbjct: 141 GTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIG 200
Query: 97 NENTHLTSMHLL 108
+ LT++ LL
Sbjct: 201 GRYSVLTAVGLL 212
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 81 QNAQGRYCFMSG-DARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRI 139
Q+ + R +G D A +NT LT +HL H + L+ D D VY +
Sbjct: 26 QDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLH 85
Query: 140 LGAQMQHV 147
L A H+
Sbjct: 86 LAAMTGHL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,688,945
Number of Sequences: 62578
Number of extensions: 217159
Number of successful extensions: 573
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 48
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)