Query psy9915
Match_columns 191
No_of_seqs 133 out of 953
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:53:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 4.3E-63 1.5E-67 448.9 15.3 185 2-188 30-236 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 4.9E-63 1.7E-67 458.9 12.3 185 2-188 156-363 (595)
3 1q4g_A Prostaglandin G/H synth 100.0 7.5E-50 2.6E-54 368.5 11.4 164 19-186 186-367 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 1.4E-48 4.9E-53 361.4 8.3 162 21-186 188-367 (587)
5 2ju0_B Phosphatidylinositol 4- 51.2 3 0.0001 26.2 -0.1 31 132-163 4-40 (52)
6 3lqv_P Splicing factor 3B subu 49.0 13 0.00046 21.8 2.5 18 115-132 11-28 (39)
7 3sjr_A Uncharacterized protein 25.1 1.2E+02 0.0042 23.2 5.0 34 102-142 97-145 (175)
8 2hjd_A Quorum-sensing antiacti 18.7 40 0.0014 23.8 1.1 18 102-119 29-46 (102)
9 1rfy_A TRAM protein;, transcri 18.5 41 0.0014 23.8 1.1 18 102-119 29-46 (102)
10 1u7k_A GAG polyprotein; capsid 18.0 36 0.0012 25.2 0.7 24 120-143 45-82 (131)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=4.3e-63 Score=448.88 Aligned_cols=185 Identities=42% Similarity=0.690 Sum_probs=165.8
Q ss_pred ceeeccccCCCC-CCCCCcccccccCCCccccCCCCCCCHHHHHHhhccCC--Cceeeee--cCCCccCCCCCCCCCCCC
Q psy9915 2 TCMEFIRSSPAP-SCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFI--TPDGRELLPVSTDPLDGC 76 (191)
Q Consensus 2 ~C~~f~Rs~~~~-~~~~~preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G~L~~~~--~~~g~~~lP~~~~~~~~c 76 (191)
+||||+||.+++ +|..+||||+|++|||||||+|||++++++++||++++ ||||+.. ..+|+.+||.+......|
T Consensus 30 ~cl~f~Rs~~~~~~g~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c 109 (466)
T 1d2v_C 30 DCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPC 109 (466)
T ss_dssp CEECCBCCCBSSTTCSSSCCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCCBCCCSSCCBTTBCCCCBCCCTTCSG
T ss_pred cceeeecCccccCCCCCCHHHHhhccccccccccCcCCCHHHHHHHhccCCCCCeeccCCccCCCCCcCCCCCCCCCCcc
Confidence 699999999985 46667999999999999999999999999999999987 9999852 126888999876655567
Q ss_pred cccccccccccccccCCCCcccchHHHHHHHHHHhhhhHHHHHHHhhCCCCChhHHHHHHHHHHHHhhheEEe-------
Q psy9915 77 NEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS------- 149 (191)
Q Consensus 77 ~~~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~W~de~lfqeAR~Iv~a~~Q~I~y------- 149 (191)
..... ..+..||++||.|+||+|+|+++||||+|||||||++|+++||+|+||+||||||+||+|+||||||
T Consensus 110 ~~~~~-~~~~~cf~~GD~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~DE~LFqeAR~Iv~a~~Q~I~~~EyLp~i 188 (466)
T 1d2v_C 110 LLTNR-SARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLV 188 (466)
T ss_dssp GGGCT-TTCCCCBCCSSTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccc-CCCcchhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 64321 2345699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------cCCCCCCCCCCCchhHHHHHHHHHhhhccccCccccccc
Q psy9915 150 ----------GYSNDYKPDVDPTVSNNFATSAFRFAHTLIPGPTKNVSV 188 (191)
Q Consensus 150 ----------g~~~~Y~~~v~p~i~~eFa~aA~RfgHs~i~~~~~~~~~ 188 (191)
|.|.||+++++|+|++|| +||||||||||++.+.++++
T Consensus 189 lG~~~~~~~~~~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~ 236 (466)
T 1d2v_C 189 LGPTAMRKYLPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDN 236 (466)
T ss_dssp HHHHHHHHHSCCCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCT
T ss_pred hCchhhhhcCCcccCCCCCCCCchhHHH-HHHHhcccccCchhhccccc
Confidence 457899999999999999 99999999999999998876
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=4.9e-63 Score=458.86 Aligned_cols=185 Identities=40% Similarity=0.647 Sum_probs=166.5
Q ss_pred ceeeccccCCCC-CCCCC--cccccccCCCccccCCCCCCCHHHHHHhhccCC--Cceeeee--cCCCccCCCCCCCCCC
Q psy9915 2 TCMEFIRSSPAP-SCTLG--PREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFI--TPDGRELLPVSTDPLD 74 (191)
Q Consensus 2 ~C~~f~Rs~~~~-~~~~~--preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~--G~L~~~~--~~~g~~~lP~~~~~~~ 74 (191)
.||||+||.+++ +|..+ ||||+|++|||||||+|||++++++++||++++ |+||+.. ..+|+.+||...+...
T Consensus 156 ~Cm~f~RS~~~~~~~~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~ 235 (595)
T 3q9k_A 156 KCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 235 (595)
T ss_dssp SEECCBCBCBSSCSSCCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTTBCCCCBCCCSSC
T ss_pred ceeEeecCCCcCCCCCCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCCccCCCCCCCCCC
Confidence 499999999985 67777 999999999999999999999999999999988 9999863 2378889999876555
Q ss_pred CCcccccccccccccccCCCCcccchHHHHHHHHHHhhhhHHHHHHHhhCCCCChhHHHHHHHHHHHHhhheEEe-----
Q psy9915 75 GCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS----- 149 (191)
Q Consensus 75 ~c~~~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlf~ReHNria~~L~~~np~W~de~lfqeAR~Iv~a~~Q~I~y----- 149 (191)
.|..... ..+.+||++||.|+||+|+|+++||||+|||||||++|+++||+|+||+|||||||||||+||||||
T Consensus 236 ~c~~~~~-~~~~~cf~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv~A~~Q~Ity~E~LP 314 (595)
T 3q9k_A 236 PCEFINT-TARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLP 314 (595)
T ss_dssp HHHHTCT-TTCCCCBCCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cccccCC-CCCCcccccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHeeeeeHHHHHH
Confidence 5643221 2345699999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------cCCCCCCCCCCCchhHHHHHHHHHhhhccccCccccccc
Q psy9915 150 -----------GYSNDYKPDVDPTVSNNFATSAFRFAHTLIPGPTKNVSV 188 (191)
Q Consensus 150 -----------g~~~~Y~~~v~p~i~~eFa~aA~RfgHs~i~~~~~~~~~ 188 (191)
|.|.||++.+||+|++|| +||||||||||++.+.+++.
T Consensus 315 ~ilG~~~~~~~~~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~ 363 (595)
T 3q9k_A 315 IVLGSEMQKWIPPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDE 363 (595)
T ss_dssp HHHGGGHHHHSCSCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCT
T ss_pred HHhCchhhhhCCCccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCc
Confidence 347899999999999999 99999999999999999876
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=7.5e-50 Score=368.54 Aligned_cols=164 Identities=20% Similarity=0.310 Sum_probs=136.3
Q ss_pred cccccccCCCccccCCCCCCCHHHHHHhhccCCCceeeeecCCCccCCCCCCCCCCCCcccccccccccccccCCCCccc
Q psy9915 19 PREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANE 98 (191)
Q Consensus 19 preq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~L~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~~GD~R~ne 98 (191)
+.+++|++|||||||+|||++++++++||++++||||++. .+|+.+||...+....|.... ......||++||.|+||
T Consensus 186 ~~~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~-~~g~~~~P~~~~~~~~~~~~~-~~~~~~cf~~GD~R~ne 263 (553)
T 1q4g_A 186 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM-LNGEVYPPSVEEAPVLMHYPR-GIPPQSQMAVGQEVFGL 263 (553)
T ss_dssp CTTBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEE-ETTEEECCBTTTSCCCCCCCT-TCCGGGSBCCSSTTGGG
T ss_pred chhhcccccccccccccCCCCHHHHHhhhcCCCCEecccC-CCCccCCCccCCCCCcccCCC-CCCchhccccCccccCc
Confidence 4579999999999999999999999999999999999875 478888887543221111111 11234699999999999
Q ss_pred chHHHHHHHHHHhhhhHHHHHHHhhCCCCChhHHHHHHHHHHHHhhheEEe--------cC-C-CCCCCC--------CC
Q psy9915 99 NTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS--------GY-S-NDYKPD--------VD 160 (191)
Q Consensus 99 ~p~l~~lhtlf~ReHNria~~L~~~np~W~de~lfqeAR~Iv~a~~Q~I~y--------g~-~-~~Y~~~--------v~ 160 (191)
+|+|+++||||+|||||||++|+++||+|+||+||||||+||+|+|||||| |+ + ..|||. ++
T Consensus 264 ~p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~dp~~~~~~~~~~~ 343 (553)
T 1q4g_A 264 LPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYR 343 (553)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCcccccCCCcccC
Confidence 999999999999999999999999999999999999999999999999999 32 1 235553 57
Q ss_pred CchhHHHHHHHHHhhhccccCccccc
Q psy9915 161 PTVSNNFATSAFRFAHTLIPGPTKNV 186 (191)
Q Consensus 161 p~i~~eFa~aA~RfgHs~i~~~~~~~ 186 (191)
|+|++||++ ||| ||||||+.+.+.
T Consensus 344 ~~is~EF~~-ayR-~Hslip~~~~~~ 367 (553)
T 1q4g_A 344 NRIAMEFNQ-LYH-WHPLMPDSFRVG 367 (553)
T ss_dssp CCCBHHHHH-HTC-CGGGSCSSEEET
T ss_pred cchhHHHHH-Hhc-ccccCCcccccC
Confidence 789999986 599 799999988654
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.4e-48 Score=361.43 Aligned_cols=162 Identities=23% Similarity=0.362 Sum_probs=135.4
Q ss_pred cccccCCCccccCCCCCCCHHHHHHhhccCCCceeeeecCCCccCCCCCCCCCCCCcccccccccccccccCCCCcccch
Q psy9915 21 EQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENT 100 (191)
Q Consensus 21 eq~N~~Ts~lD~S~iYGs~~~~~~~LR~~~~G~L~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~~GD~R~ne~p 100 (191)
.+.|++|||||||+|||++++++++||++++|+||++. .+|+.+||...+....|..... .....||++||.|+||+|
T Consensus 188 ~~~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~-~~g~~~pP~~~~~~~~~~~~~~-~~~~~cf~~GD~R~ne~p 265 (587)
T 3nt1_A 188 GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQV-IGGEVYPPTVKDTQVEMIYPPH-IPENLQFAVGQEVFGLVP 265 (587)
T ss_dssp TBBSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEE-ETTEEECCBHHHHCCCCCCCTT-SCGGGCBCCSSTTTTSCH
T ss_pred ccccCccceeeeccCCCCCHHHHHhccCCCCCeeeeec-CCCccCCCCCCCcccccccCCC-CCcccccccCCcccccCh
Confidence 45899999999999999999999999999999999875 6788888885432223432211 123469999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhCCCCChhHHHHHHHHHHHHhhheEEe--------cC--CCCCCCC--------CCCc
Q psy9915 101 HLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS--------GY--SNDYKPD--------VDPT 162 (191)
Q Consensus 101 ~l~~lhtlf~ReHNria~~L~~~np~W~de~lfqeAR~Iv~a~~Q~I~y--------g~--~~~Y~~~--------v~p~ 162 (191)
+|+++||||+|||||||++|+++||+|+||+||||||+||+|+|||||| |+ ..+|++. ++|+
T Consensus 266 gL~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~~~~~~~~~~~~ 345 (587)
T 3nt1_A 266 GLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNR 345 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCcccccCCCCCcCch
Confidence 9999999999999999999999999999999999999999999999999 43 2345554 4899
Q ss_pred hhHHHHHHHHHhhhccccCccccc
Q psy9915 163 VSNNFATSAFRFAHTLIPGPTKNV 186 (191)
Q Consensus 163 i~~eFa~aA~RfgHs~i~~~~~~~ 186 (191)
|++||++| | ||||||++.+.+.
T Consensus 346 is~eF~~a-~-~~Hslip~~~~~~ 367 (587)
T 3nt1_A 346 IASEFNTL-Y-HWHPLLPDTFNIE 367 (587)
T ss_dssp CBHHHHHH-T-CCGGGSCSSEEET
T ss_pred HHHHHHHH-H-hccccCCcccccC
Confidence 99999866 5 6899999988653
No 5
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=51.19 E-value=3 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhheEEecCC------CCCCCCCCCch
Q psy9915 132 VYQESRRILGAQMQHVTSGYS------NDYKPDVDPTV 163 (191)
Q Consensus 132 lfqeAR~Iv~a~~Q~I~yg~~------~~Y~~~v~p~i 163 (191)
=||.+|++ +-.+|+|+++.. ..+.+++.|.+
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn~~~~~~~~~k~~ENv~Pal 40 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFNTSSGSDKNVKIHENVAPAL 40 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSCSSCCCCTTCCSSCSHHHHH
T ss_pred hhHHHHHH-HHHHHHHHhCCCccccchHHhhccccHHH
Confidence 38999995 678999999532 35666666654
No 6
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=48.97 E-value=13 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCCChhHH
Q psy9915 115 TLARQLVTLNPDWDDETV 132 (191)
Q Consensus 115 ria~~L~~~np~W~de~l 132 (191)
++-.++-..|-.|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 456778889999999987
No 7
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=25.05 E-value=1.2e+02 Score=23.22 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCCChh---------------HHHHHHHHHHHH
Q psy9915 102 LTSMHLLLARQHNTLARQLVTLNPDWDDE---------------TVYQESRRILGA 142 (191)
Q Consensus 102 l~~lhtlf~ReHNria~~L~~~np~W~de---------------~lfqeAR~Iv~a 142 (191)
+.++.|.|+ ..-+..||.|+.| +=|+|||.|..+
T Consensus 97 IVsfaT~FF-------~~yq~qhPd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~G 145 (175)
T 3sjr_A 97 LLLGMEILM-------ELYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQ 145 (175)
T ss_dssp HHHHHHHHH-------HHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHhCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 555666666 4456789999874 558999988754
No 8
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=18.71 E-value=40 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhHHHHH
Q psy9915 102 LTSMHLLLARQHNTLARQ 119 (191)
Q Consensus 102 l~~lhtlf~ReHNria~~ 119 (191)
|-.+.+-=+|+|.|+.++
T Consensus 29 lE~LtV~AIr~HRrLl~~ 46 (102)
T 2hjd_A 29 IETLTANAIRLHRQLLEK 46 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556667999999874
No 9
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=18.55 E-value=41 Score=23.82 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhHHHHH
Q psy9915 102 LTSMHLLLARQHNTLARQ 119 (191)
Q Consensus 102 l~~lhtlf~ReHNria~~ 119 (191)
|-.+.+-=+|+|.|+.++
T Consensus 29 lE~LtV~AIr~HRrLl~~ 46 (102)
T 1rfy_A 29 LETITIDAIRTHRRLVEK 46 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556667999999874
No 10
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=17.96 E-value=36 Score=25.25 Aligned_cols=24 Identities=38% Similarity=0.738 Sum_probs=17.1
Q ss_pred HHhhCCCCCh--------------hHHHHHHHHHHHHh
Q psy9915 120 LVTLNPDWDD--------------ETVYQESRRILGAQ 143 (191)
Q Consensus 120 L~~~np~W~d--------------e~lfqeAR~Iv~a~ 143 (191)
+..-+|.|+| +++..||||.|.+.
T Consensus 45 ~~th~pTW~D~qqLL~tLlT~EEr~ril~eArk~v~~~ 82 (131)
T 1u7k_A 45 LTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGN 82 (131)
T ss_dssp HHHTCCCHHHHHHHHHHHSCHHHHHHHHHHHHHTCBCT
T ss_pred HHhcCCCHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 3444677766 67999999986553
Done!