RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9915
(191 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 257 bits (658), Expect = 9e-86
Identities = 90/185 (48%), Positives = 118/185 (63%), Gaps = 27/185 (14%)
Query: 20 REQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEK 79
REQLNQV+S+LD S VYG++EE A +LRTF+ G LK +GRELLP S +P D C
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQRR-NGRELLPFSNNPTDDC--- 56
Query: 80 QQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRI 139
++ G+ CF++GD R NE LTSMH L R+HN +A +L LNP WDDE ++QE+R+I
Sbjct: 57 SLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARKI 116
Query: 140 LGAQMQHVT-----------------------SGYSNDYKPDVDPTVSNNFATSAFRFAH 176
+ AQMQH+T SGY N Y P+VDP++ N FA +AFRF H
Sbjct: 117 VIAQMQHITYNEFLPILLGRELMEKFGLYLLTSGYFNGYDPNVDPSILNEFAAAAFRFGH 176
Query: 177 TLIPG 181
+L+PG
Sbjct: 177 SLVPG 181
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 230 bits (588), Expect = 1e-73
Identities = 87/205 (42%), Positives = 120/205 (58%), Gaps = 34/205 (16%)
Query: 2 TCMEFIRSSPAPSCT---LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM-- 56
C+ F RS+PA PREQ+NQ++SYLD S VYG++EE A++LRTF+ G+LK+
Sbjct: 119 RCLPFFRSAPACGTGPSCNLPREQINQLTSYLDLSQVYGSSEEEADKLRTFKDGKLKVNG 178
Query: 57 -FITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
F P+G+ LLP GC CF++GD+R NEN LT++H L R+HN
Sbjct: 179 EFPPPNGKGLLPAPPPGPSGC---------LSCFLAGDSRVNENPGLTALHTLFLREHNR 229
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT-------------------SGYSNDYK 156
+A +L LNP W DE ++QE+R I+ AQ Q +T Y Y
Sbjct: 230 IADELKALNPHWSDEKLFQEARLIVIAQYQKITYNEYLPALLGPDLMRANWLLLYYTGYD 289
Query: 157 PDVDPTVSNNFATSAFRFAHTLIPG 181
P+VDP++SN FAT+A+RF H+LIP
Sbjct: 290 PNVDPSISNEFATAAYRFGHSLIPP 314
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 208 bits (532), Expect = 4e-66
Identities = 89/207 (42%), Positives = 122/207 (58%), Gaps = 32/207 (15%)
Query: 3 CMEFIRSSPAPSC----------TLGPREQLNQVSSYLDASVVYGNTEELANRLR--TFQ 50
C+EF+RSS C ++ PREQ+NQ++SY+DAS VYG+++E A LR
Sbjct: 12 CIEFVRSSAV--CGSGSTSLLFNSVTPREQINQLTSYIDASNVYGSSDEEALELRDLASD 69
Query: 51 KGELKMFI-TPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLL 109
+G L++ I + G+ LLP D C N CF++GD RANE LTSMH L
Sbjct: 70 RGLLRVGIVSEAGKPLLPFERDSPMDCRR-DPNESPIPCFLAGDHRANEQLGLTSMHTLW 128
Query: 110 ARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT-----------SGYS-----N 153
R+HN +A +L+ LNP WD ET+Y E+R+I+GAQMQH+T G
Sbjct: 129 LREHNRIASELLELNPHWDGETIYHETRKIVGAQMQHITYSHWLPKILGPVGMEMLGEYR 188
Query: 154 DYKPDVDPTVSNNFATSAFRFAHTLIP 180
Y P+V+P+++N FAT+AFRF HTLI
Sbjct: 189 GYNPNVNPSIANEFATAAFRFGHTLIN 215
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 179 bits (456), Expect = 5e-55
Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 19/177 (10%)
Query: 18 GPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCN 77
PREQ+N +++Y+D S VYG+ EE A+ LR+F G+LK + G +LLP + L N
Sbjct: 46 NPREQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAG-DLLPFNEAGLPNDN 104
Query: 78 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESR 137
F++GD RANEN LT++H L R+HN LA +L NP DE +YQ +R
Sbjct: 105 GGVPADDL---FLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEIYQAAR 161
Query: 138 RILGAQMQHVT--------------SGYSNDYKPDVDPTVSNNFATSAFRFAHTLIP 180
I+ A++Q +T YS Y V+P +SN F+T+A+RF H+++
Sbjct: 162 AIVIAEIQAITYNEFLPALLGENALPAYSG-YDETVNPGISNEFSTAAYRFGHSMLS 217
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 166 bits (423), Expect = 4e-49
Identities = 78/212 (36%), Positives = 107/212 (50%), Gaps = 32/212 (15%)
Query: 1 MTCMEFIRSSPA-----------PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTF 49
C+ F RSS PREQ+N ++S++DAS VYG+T LA LR
Sbjct: 118 RACLPFFRSSAVCGTGDTSTLFGNLSLANPREQINGLTSFIDASTVYGSTLALARSLRDL 177
Query: 50 QKGELKMFI----TPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSM 105
+ + + GR+ LP + + CN + CF++GD RA+E LT+
Sbjct: 178 SSDDGLLRVNSKFDDSGRDYLPFQPEEVSSCNPDPNGGERVPCFLAGDGRASEVLTLTAS 237
Query: 106 HLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVT----------------- 148
H L R+HN LAR L ++NP WD E +YQE+R+I+GA Q +T
Sbjct: 238 HTLWLREHNRLARALKSINPHWDGEQIYQEARKIVGALHQIITFRDYIPKILGPEAFDQY 297
Query: 149 SGYSNDYKPDVDPTVSNNFATSAFRFAHTLIP 180
GY Y P V+PTVSN F+T+AFRF H I
Sbjct: 298 GGYYEGYDPTVNPTVSNVFSTAAFRFGHATIH 329
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 151 bits (384), Expect = 2e-44
Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 24/191 (12%)
Query: 12 APSCTLGP--REQLNQVSSYLDASVVYGNTEELANRLR--TFQKGELKMF--ITPDGREL 65
+CT REQ+N ++S++DAS+VYG+ LA LR T Q G L + T +G L
Sbjct: 2 CGACTSKRNVREQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGLAL 61
Query: 66 LPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNP 125
LP D C + + CF++GD R +EN L ++H LL R+HN LAR+L LNP
Sbjct: 62 LPFENLHNDPCALRNT-SANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNP 120
Query: 126 DWDDETVYQESRRILGAQMQHVT----------------SGYSNDYKPDVDPTVSNNFAT 169
WD ET+YQE+R+I+GA +Q +T Y VDP ++N F T
Sbjct: 121 HWDGETLYQEARKIVGAMVQIITYRDYLPLILGEDAAARLPPYRGYNESVDPRIANVFTT 180
Query: 170 SAFRFAHTLIP 180
AFR HT +
Sbjct: 181 -AFRRGHTTVQ 190
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 144 bits (366), Expect = 3e-42
Identities = 67/180 (37%), Positives = 91/180 (50%), Gaps = 25/180 (13%)
Query: 22 QLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM--FITPD-GRELLPVSTDPLDGC-N 77
QLN + YLD S +YG+ ++A LRTF+ G LK P G ELLP +
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFNNPNPSMGTI 60
Query: 78 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESR 137
CF++GD R NEN L ++H L R+HN LA +L +P+WDDE +YQE+R
Sbjct: 61 GLPPT----RCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEAR 116
Query: 138 RILGAQMQHVTSGY-----------------SNDYKPDVDPTVSNNFATSAFRFAHTLIP 180
I+ AQ Q +T PDV P V + F T+A+RF H+L+P
Sbjct: 117 LIVIAQYQLITYNEYLPAILGKFTDPRDDLVLLFPDPDVVPYVLSEFFTAAYRFGHSLVP 176
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 141 bits (358), Expect = 1e-39
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 19 PREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGREL----LPVSTDPLD 74
PREQLN+V+S++D S +YG+++ ++ LR+F G L LP++ +P
Sbjct: 130 PREQLNEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRLPLA-NPPP 188
Query: 75 GCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQ 134
+ + + G+ R NEN L + +L R HN LA+++ +PDW DE ++Q
Sbjct: 189 PSYHGTRGPERLFKL--GNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQ 246
Query: 135 ESRRILGAQMQHVT-------------SGYSNDYKPDVDPTVSNNFATSAFRFAHTLIP 180
E+R+ + A Q++ Y+ YKP VDP +S+ F +AFRF HTL+P
Sbjct: 247 EARKWVIATYQNIVFYEWLPALLGTNVPPYTG-YKPHVDPGISHEFQAAAFRFGHTLVP 304
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 70.1 bits (172), Expect = 2e-14
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 33/133 (24%)
Query: 89 FMSGDARANENTHLTSMHLLLARQHNTLA---RQLVTLNPD-------------WDDETV 132
F++GD R NEN LT++H + R+HN L + + + D WD E +
Sbjct: 178 FVAGDGRVNENIGLTAVHTVFHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERL 237
Query: 133 YQESRRILGAQMQHVT--------------SGYSNDYKPDVDPTVSNNFATSAFRFAHTL 178
+Q +R Q QH+ G N Y P+++P++S FA + +RF H++
Sbjct: 238 FQAARFANEMQYQHLVFEEFARRIQPGIDGFGSFNGYNPEINPSISAEFAHAVYRFGHSM 297
Query: 179 IPGPTKNVSVYRV 191
+ T+ V+
Sbjct: 298 L---TETVTRIGP 307
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 67.7 bits (166), Expect = 1e-13
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 45/185 (24%)
Query: 31 DASVVYGNTEELANRLRTFQKGELKMFIT----------------PDGRELLPVSTDPLD 74
D S +YG TE + LR F+ G+LK + + L+P D L
Sbjct: 132 DLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPLVPPLGDELT 191
Query: 75 GCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQ 134
E + F G R N L ++ + R+HN + L +PDWDDE ++Q
Sbjct: 192 PEREAKL-------FAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDERLFQ 244
Query: 135 ESRRILGAQM---------QHVTSGYSNDYKPDVDPTVS-------NNFATSAFRFA--- 175
+R IL ++ H+ S Y +K DP ++ N F
Sbjct: 245 TARNILIGELIKIVIEDYINHL-SPYH--FKLFFDPELAFNEPWQRQNRIALEFNLLYRW 301
Query: 176 HTLIP 180
H L+P
Sbjct: 302 HPLVP 306
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 66.2 bits (162), Expect = 4e-13
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 18 GPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCN 77
GP +N + + D S +YG+TEE RLRTF K+ + DG LLPV D G
Sbjct: 82 GPPTYINTNTHWWDGSQIYGSTEEAQKRLRTFPPDG-KLKLDADG--LLPV--DEHTGLP 136
Query: 78 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESR 137
++G N L+ +H L R+HN + L PDW DE ++ ++R
Sbjct: 137 ------------LTGFND-NWWVGLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKAR 183
Query: 138 RILGAQM 144
+ A M
Sbjct: 184 LVNAALM 190
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 56.3 bits (136), Expect = 1e-09
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 20/120 (16%)
Query: 23 LNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQN 82
LN + + D SV+YG+ E+ R+RTF+ G+LK I+ DG LL D +
Sbjct: 207 LNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLK--ISEDG--LLLHDEDGIP-------- 254
Query: 83 AQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRRILGA 142
+SGD R N ++ + L ++HN + L PD+DDE +Y+ +R + A
Sbjct: 255 -------ISGDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSA 306
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 43.9 bits (104), Expect = 2e-05
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 42/192 (21%)
Query: 19 PREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFITPDGRELLPVSTDPLDGC 76
P E N + LD VYG + + L K+ + + P DG
Sbjct: 76 PAELRNFRTPALDLDSVYGGGPDGSPYLYDQATPNDGAKLRVGRE--SPGGPGGLPGDGA 133
Query: 77 NEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQES 136
+ +N QG + GD R +EN + +HL R HN + L D+ +++E+
Sbjct: 134 RDLPRNGQGTA--LIGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEA 189
Query: 137 RRILGAQMQHVTSGYS----NDYKPD-VDPTVSNN----------------------FAT 169
RR V Y ND+ P DP V ++ F+
Sbjct: 190 RR-------LVRWHYQWLVLNDFLPRICDPDVVDDVLANGRRFYRFFREGKPFMPVEFSV 242
Query: 170 SAFRFAHTLIPG 181
+A+RF H+++
Sbjct: 243 AAYRFGHSMVRA 254
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 37.3 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 24 NQVSSYLDASVVYGNTEELANRLRTFQKGELK 55
N SSYLD S +YG+ +E N++RT + G+LK
Sbjct: 118 NNTSSYLDLSPLYGSNQEEQNKVRTMKDGKLK 149
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain. This short domain is
found in one or two copies at the amino terminus of ClpA
and ClpB proteins from bacteria and eukaryotes. The
function of these domains is uncertain but they may form
a protein binding site.
Length = 53
Score = 27.5 bits (62), Expect = 0.69
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 94 ARANENTHLTSMHLLLA--RQHNTLARQL 120
A+ + ++ + HLLLA + + +A +L
Sbjct: 5 AKELGHQYIGTEHLLLALLEEDDGIAARL 33
>gnl|CDD|226675 COG4222, COG4222, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 391
Score = 27.4 bits (61), Expect = 5.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 56 MFITPDGRELLPVSTDPLDGCNEKQQNAQGRYC 88
+ ITPDG++L + L K G
Sbjct: 205 LAITPDGKKLYALLEGALAQDGNKADPTGGSPL 237
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein
(aminomethyltransferase) [Amino acid transport and
metabolism].
Length = 379
Score = 27.2 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 108 LLARQHNTLARQLVTLNPDWDDETVYQESRRIL---GAQMQ-HVTSGY 151
LL + + R+LV L D D V + +L G VTSG
Sbjct: 280 LLREKAKGVRRKLVGLKLD-DKGPVLRGGEPVLDADGEVEVGEVTSGT 326
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 26.8 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 109 LARQHNTLARQLVTLNPDWDDETVYQESRRIL 140
LAR+H LA + P+ DDE V SRR L
Sbjct: 380 LAREHANLAAAAIESLPETDDEDV-LTSRRAL 410
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 26.7 bits (59), Expect = 8.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 94 ARANENTH--LTSMHLLLARQHNTLARQ 119
ARA E+ H +T HLLLA N AR+
Sbjct: 15 ARAREHRHEFMTVEHLLLALLSNPSARE 42
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 433
Score = 26.5 bits (59), Expect = 9.9
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 4 MEFIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM 56
+++ + LG N +++ A + N E + LR+F+ ++
Sbjct: 248 GLYLKPNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRL 300
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,464,354
Number of extensions: 838020
Number of successful extensions: 706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 25
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)