RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9915
(191 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 182 bits (463), Expect = 5e-56
Identities = 77/209 (36%), Positives = 108/209 (51%), Gaps = 24/209 (11%)
Query: 1 MTCMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFIT 59
C+ F RS PA P + R Q+N ++S++DAS+VYG+ E LA LR + +
Sbjct: 29 ADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVN 88
Query: 60 P----DGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
+GR LLP D C + CF++GD R++E LTSMH LL R+HN
Sbjct: 89 QRFQDNGRALLPFDNLHDDPCL-LTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNR 147
Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVTS-----------------GYSNDYKPD 158
LA +L +LNP WD E +YQE+R+I+GA +Q +T Y
Sbjct: 148 LATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDS 207
Query: 159 VDPTVSNNFATSAFRFAHTLIPGPTKNVS 187
VDP ++N F T+AFR+ HTLI +
Sbjct: 208 VDPRIANVF-TNAFRYGHTLIQPFMFRLD 235
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 162 bits (411), Expect = 2e-47
Identities = 75/203 (36%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 2 TCMEFIRSSPA---PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFI 58
CM F R+ P REQ+N V+S+LDAS+VYG+ LA+RLR M +
Sbjct: 156 KCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAV 215
Query: 59 TPD----GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHN 114
+ G LP + C CF++GD RA+E L + H LL R+HN
Sbjct: 216 NQEAWDHGLAYLPFNNKKPSPCEF-INTTARVPCFLAGDFRASEQILLATAHTLLLREHN 274
Query: 115 TLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS----------------GYSNDYKPD 158
LAR+L LNP W+ E +YQE+R+ILGA +Q +T Y
Sbjct: 275 RLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNS 334
Query: 159 VDPTVSNNFATSAFRFAHTLIPG 181
VDP +SN F T AFRF H +P
Sbjct: 335 VDPRISNVF-TFAFRFGHMEVPS 356
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 155 bits (393), Expect = 5e-45
Identities = 32/192 (16%), Positives = 55/192 (28%), Gaps = 18/192 (9%)
Query: 6 FIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGREL 65
+ + +D + +YG T + ++LR F+ G+LK G
Sbjct: 173 HFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQ-VIGGEVY 231
Query: 66 LPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNP 125
P D + F G L + R+HN + L +P
Sbjct: 232 PPTVKDTQVEMI-YPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHP 290
Query: 126 DWDDETVYQESRRILGAQMQHVTS----------------GYSNDYKPDVDPTVSNNFAT 169
+W DE ++Q SR IL + + +
Sbjct: 291 EWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEF 350
Query: 170 SAFRFAHTLIPG 181
+ H L+P
Sbjct: 351 NTLYHWHPLLPD 362
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 153 bits (387), Expect = 2e-44
Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 27/197 (13%)
Query: 3 CMEFIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDG 62
+F ++S + +D +YG+ E +LR F+ G+LK +G
Sbjct: 175 THQFFKTSGKM-----GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQ-MLNG 228
Query: 63 RELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVT 122
P + + + + G L + R+HN + L
Sbjct: 229 EVYPPSVEEAPVLMHY-PRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKA 287
Query: 123 LNPDWDDETVYQESRRILGAQMQHVT--------SGYSND----------YKPDVDPTVS 164
+P W DE ++Q +R IL + + SGY + ++
Sbjct: 288 EHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIA 347
Query: 165 NNFATSAFRFAHTLIPG 181
F H L+P
Sbjct: 348 MEFNQ--LYHWHPLMPD 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 2e-04
Identities = 39/224 (17%), Positives = 66/224 (29%), Gaps = 90/224 (40%)
Query: 10 SPAP--SCTLGPREQL----NQVSSYLDAS--------------VVYGNTEELANRLRTF 49
P+P S + +EQ+ N+ +S+L A VV G + L T
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 50 QKGELKMFITPDG----------REL------LPVSTDP-----LDGCNEKQQNAQGR-- 86
+K + P G R+L LPV++ P L ++ +
Sbjct: 394 RKAK-----APSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNN 447
Query: 87 ------------YCFMSG-DARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVY 133
Y G D R + + R + ++ L W+ T +
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGS-------ISER----IVDCIIRLPVKWETTTQF 496
Query: 134 QESRRI---------LGAQMQHVTSGY--------SNDYKPDVD 160
+ + + LG G + D PD D
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 35.4 bits (81), Expect = 0.011
Identities = 33/207 (15%), Positives = 57/207 (27%), Gaps = 55/207 (26%)
Query: 5 EFIRSSPAPSCTLGPREQ-----------LNQVSSYLDASVVYGNTEELANRLRTFQKGE 53
+F + P P+ ++ L VSS ++ S V + L L F+
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 54 LKMFITPDGREL--LPVSTDPLDGCNEKQQNAQGRY--CFMSGDARANENTHLTSMHLLL 109
L+ G ++ L L N+ +++ A S L
Sbjct: 96 LE------GNDIHALAAK---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 110 --ARQHNTLARQLVTL-----NPDWDDETVYQESRRILGAQMQHVTSGYSNDYKPDVDPT 162
+ N QLV + N + ++E R + Y Y V
Sbjct: 147 RAVGEGNA---QLVAIFGGQGNT----DDYFEELRDL-----------Y-QTYHVLVGD- 186
Query: 163 VSNNFATSAFRFAHTLIPGPTKNVSVY 189
+ LI V+
Sbjct: 187 ----LIKFSAETLSELIRTTLDAEKVF 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.83
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 155 YKPDVDPTVSNNFAT 169
Y D P ++ AT
Sbjct: 32 YADDSAPALAIK-AT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 4.1
Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 57/203 (28%)
Query: 21 EQLNQVSSYLDASVVYG---------NTEELANRLRTFQKGELKMFITPDGRELLPVSTD 71
E L ++ +D + + LR K + P LL V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK------PYENCLL-V--- 249
Query: 72 PLDG-CNEKQQNAQGRYC---FMSGDAR------ANENTHLTSMHL-----------LLA 110
L N K NA C + + A TH++ H LL
Sbjct: 250 -LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 111 RQHNT----LARQLVTLNP---------DWDDETVYQESRRILGAQMQHVTSGYSNDYKP 157
+ + L R+++T NP D + + + ++ + N +P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 158 DVDPTVSNNFATSAFRFAHTLIP 180
+ + + F IP
Sbjct: 369 AEYRKMFDRLSV--FP-PSAHIP 388
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus
solfataricus}
Length = 139
Score = 25.4 bits (56), Expect = 9.5
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 109 LARQHNTLARQLVTLNPDWDDETVYQESRRILGAQMQHVTS 149
L + H + LV + D T + S++ ++
Sbjct: 81 LIKAHRVIEILLVNIGIDKQ--TACEYSKQ-----FDYLIP 114
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 26.0 bits (58), Expect = 9.9
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 132 VYQESRRILGAQMQHVTSGYSNDYKPDVDPTV 163
+Y+ + + + A+ + ND+ P ++
Sbjct: 120 IYEGAAKFIKAKSLLMPLTKENDFTPSLNEKE 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,811,997
Number of extensions: 152522
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 13
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)