RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9915
         (191 letters)



>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score =  172 bits (436), Expect = 1e-51
 Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 24/203 (11%)

Query: 1   MTCMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM--- 56
             C+ F RS PA P   +  R Q+N ++S++DAS+VYG+ E LA  LR        +   
Sbjct: 133 ADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVN 192

Query: 57  -FITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNT 115
                +GR LLP      D C    ++A    CF++GD R++E   LTSMH LL R+HN 
Sbjct: 193 QRFQDNGRALLPFDNLHDDPCLLTNRSA-RIPCFLAGDTRSSEMPELTSMHTLLLREHNR 251

Query: 116 LARQLVTLNPDWDDETVYQESRRILGAQMQHVT-----------------SGYSNDYKPD 158
           LA +L +LNP WD E +YQE+R+I+GA +Q +T                       Y   
Sbjct: 252 LATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDS 311

Query: 159 VDPTVSNNFATSAFRFAHTLIPG 181
           VDP ++N F T+AFR+ HTLI  
Sbjct: 312 VDPRIANVF-TNAFRYGHTLIQP 333


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score =  162 bits (412), Expect = 1e-48
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 18/184 (9%)

Query: 14  SCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPL 73
           +           +   +D + +YG T +  ++LR F+ G+LK      G    P   D  
Sbjct: 140 TDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQ-VIGGEVYPPTVKDTQ 198

Query: 74  DGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVY 133
                   +      F  G         L     +  R+H  +   L   +P+W DE ++
Sbjct: 199 VEMIY-PPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLF 257

Query: 134 QESRRILGAQMQHVTS----------------GYSNDYKPDVDPTVSNNFATSAFRFAHT 177
           Q S+ IL  +   +                       +              +     H 
Sbjct: 258 QTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHP 317

Query: 178 LIPG 181
           L+P 
Sbjct: 318 LLPD 321


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score =  153 bits (387), Expect = 6e-45
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 18/179 (10%)

Query: 19  PREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNE 78
                  +   +D   +YG+  E   +LR F+ G+LK        E+ P S +       
Sbjct: 144 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKY--QMLNGEVYPPSVEEAPVLMH 201

Query: 79  KQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLVTLNPDWDDETVYQESRR 138
             +    +     G         L     +  R+HN +   L   +P W DE ++Q +R 
Sbjct: 202 YPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARL 261

Query: 139 ILGAQMQHVT--------SGYSND--------YKPDVDPTVSNNFATSAFRFAHTLIPG 181
           IL  +   +         SGY           +              +     H L+P 
Sbjct: 262 ILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPD 320


>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
           {Synechococcus sp. strain PCC 7942 (Anacystis nidulans
           R2) [TaxId: 1140]}
          Length = 242

 Score = 26.1 bits (56), Expect = 3.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 44  NRLRTFQKGELKMFITPDGRELLPVS 69
            R  +  KGE    IT  G  + P+ 
Sbjct: 212 LRGTSHMKGEYPFTITDHGINIFPLG 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,156
Number of extensions: 28852
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)