BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9916
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 44 QHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGN 102
Q P C+P+++ D K C+ F RS PA P + R Q+N ++S++DAS+VYG+
Sbjct: 9 QQPPCFPLKIPPNDPRI-KNQADCIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGS 67
Query: 103 TEELANRLRTF--QKGELKM--FITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDA 158
E LA LR Q G L + +GR LLP D C ++A+ CF++GD
Sbjct: 68 EEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARI-PCFLAGDT 126
Query: 159 RANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
R++E LTSMH LL R+HN LA +L +LNP WD
Sbjct: 127 RSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 160
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 44 QHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGN 102
Q P C+P+++ D K C+ F RS PA P + R Q+N ++S++DAS+VYG+
Sbjct: 9 QQPPCFPLKIPPNDPRI-KNQADCIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGS 67
Query: 103 TEELANRLRTF--QKGELKM--FITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDA 158
E LA LR Q G L + +GR LLP D C ++A+ CF++GD
Sbjct: 68 EEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARI-PCFLAGDT 126
Query: 159 RANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
R++E LTSMH LL R+HN LA +L +LNP WD
Sbjct: 127 RSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 160
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 44 QHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA-PSCTLGPREQLNQVSSYLDASVVYGN 102
Q P C+P+++ D K C+ F RS PA P + R Q+N ++S++DAS+VYG+
Sbjct: 9 QQPPCFPLKIPPNDPRI-KNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGS 67
Query: 103 TEELANRLRTF--QKGELKM--FITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDA 158
E LA LR Q G L + +GR LLP D C ++A+ CF++GD
Sbjct: 68 EEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARI-PCFLAGDT 126
Query: 159 RANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
R++E LTSMH LL R+HN LA +L +LNP WD
Sbjct: 127 RSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 160
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GS+ S + C C VQ D+ C+P+ D K CM F R+ P P
Sbjct: 120 GSSEHSKVQCEEYC-VQGDE----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
R+Q+N V+S+LDAS+VYG+ LA+RLR M + + G P +
Sbjct: 174 SLARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A CF +GD+RA+E L ++H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTAHVP-CFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GS+ S + C C VQ D+ C+P+ D K CM F R+ P P
Sbjct: 120 GSSEHSKVQCEEYC-VQGDE----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
R+Q+N V+S+LDAS+VYG+ LA+RLR M + + G P +
Sbjct: 174 SLARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A CF +GD+RA+E L ++H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTAHVP-CFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GS+ S + C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSSEHSKVQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
R+Q+N V+S+LDAS+VYG+ LA+RLR M + + G P +
Sbjct: 174 SLARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF +GD+RA+E L ++H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTARVP-CFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GS+ S + C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSSEHSKVQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
R+Q+N V+S+LDAS+VYG+ LA+RLR M + + G P +
Sbjct: 174 SLARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF +GD+RA+E L ++H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTARVP-CFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 234 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 288
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 108 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 161
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 162 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 221
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 222 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 276
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 108 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 161
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 162 SLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 221
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 222 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 276
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 234 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 288
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 234 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 288
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RL+ M + + G LP +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWD 288
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 27 GSNNGSTITC---CGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSS---PAPSCT 80
GSN S C C +Q D C+P+ D K CM F R+ P P
Sbjct: 120 GSNEHSKTQCEEYC-IQGDN----CFPIMFPKNDPKL-KTQGKCMPFFRAGFVCPTPPYQ 173
Query: 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVSTDP 136
REQ+N V+S+LDAS+VYG+ LA+RL+ M + + G LP +
Sbjct: 174 SLAREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRK 233
Query: 137 LDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C A+ CF++GD RA+E L + H LL R+HN LAR+L LNP WD
Sbjct: 234 PSPCEFINTTARVP-CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWD 288
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 34.7 bits (78), Expect = 0.032, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 49 YPVELKSGDDYYHKYNMTCMEFIRSSPAPSCTLGPREQLNQVSS-YLDASVVYGNTEELA 107
+ +EL + + K ++ F+++ P+ + + + + D+SV+YG+ +
Sbjct: 185 HQIELVAPKEVASKCPLSSFRFLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTL 244
Query: 108 NRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLT 167
+R+RT++ G+LK+ + LL D L +SGD R N ++
Sbjct: 245 DRVRTYKDGKLKI---SEETGLLLHDEDGLA---------------ISGDIR-NSWAGVS 285
Query: 168 SMHLLLARQHNTLARQL 184
++ L ++HN + L
Sbjct: 286 ALQALFIKEHNAVCDAL 302
>pdb|1VM9|A Chain A, The X-Ray Structure Of The Cys84ala Cys85ala Double
Mutant Of The [2fe-2s] Ferredoxin Subunit Of Toluene-4-
Monooxygenase From Pseudomonas Mendocina Kr1
pdb|2Q3W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
The Cys84ala Cys85ala Double Mutant Of The [2fe-2s]
Ferredoxin Subunit Of Toluene- 4-Monooxygenase From
Pseudomonas Mendocina Kr1
Length = 111
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 22 ITISQGSNNGSTITC------------CGVQKDQQHPACYPVELKSGDDYY 60
I +S+GS G ITC G+ D A YPVE+K GDD Y
Sbjct: 49 ILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVK-GDDIY 98
>pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2WTF|B Chain B, Dna Polymerase Eta In Complex With The
Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link
pdb|2XGP|A Chain A, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGP|B Chain B, Yeast Dna Polymerase Eta In Complex With C8-2-
Acetylaminofluorene Containing Dna
pdb|2XGQ|A Chain A, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
pdb|2XGQ|B Chain B, Structure Of Yeast Dna Polymerase Eta In Complex With
C8-N- Acetyl-2-Aminoanthracene Containing Dna
Length = 536
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 89 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 146
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 364 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 423
Query: 147 AQGRYC 152
+G+ C
Sbjct: 424 LRGKSC 429
>pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8J|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
pdb|2R8K|B Chain B, Structure Of The Eukaryotic Dna Polymerase Eta In Complex
With 1,2- D(gpg)-cisplatin Containing Dna
Length = 554
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 89 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 146
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 364 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 423
Query: 147 AQGRYC 152
+G+ C
Sbjct: 424 LRGKSC 429
>pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna
pdb|3MFI|A Chain A, Dna Polymerase Eta In Complex With A Cis-Syn Thymidine
Dimer
pdb|3OHA|A Chain A, Yeast Dna Polymerase Eta Inserting Dctp Opposite An 8oxog
Lesion
pdb|3OHB|A Chain A, Yeast Dna Polymerase Eta Extending From An 8-Oxog Lesion
Length = 520
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 89 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 146
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 348 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 407
Query: 147 AQGRYC 152
+G+ C
Sbjct: 408 LRGKSC 413
>pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta
pdb|1JIH|B Chain B, Yeast Dna Polymerase Eta
Length = 513
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 89 QVSSYLDASVVYGNTEELANRLRTFQKGEL--KMFITPDGRELLPVSTDPLDGCNEKQQN 146
Q+ +LDA V + + + + + +L K+F GR LP+S+ P+ +N
Sbjct: 341 QLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKN 400
Query: 147 AQGRYC 152
+G+ C
Sbjct: 401 LRGKSC 406
>pdb|2LIE|A Chain A, Nmr Structure Of The Lectin Ccl2
pdb|2LIQ|A Chain A, Solution Structure Of Ccl2 In Complex With Glycan
Length = 153
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 115 KGELKMFITPDGRELLPVSTDPLDGCNEK 143
+GE K+ +T GR+ PV+ PLDG +E+
Sbjct: 34 RGE-KLALTYPGRQRTPVTVSPLDGSSEQ 61
>pdb|1B0Z|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
pdb|1C7Q|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|1C7R|A Chain A, The Crystal Structure Of Phosphoglucose IsomeraseAUTOCRINE
MOTILITY FactorNEUROLEUKIN COMPLEXED WITH ITS
CARBOHYDRATE PHOSPHATE Inhibitors And Its Substrate
Recognition Mechanism
pdb|2PGI|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase-An
Enzyme With Autocrine Motility Factor Activity In Tumor
Cells
Length = 445
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 101 GNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARA 160
G T E A R F+ K + + R+ + V+TD G +K + +G F+ D
Sbjct: 141 GTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIG 200
Query: 161 NENTHLTSMHLL 172
+ LT++ LL
Sbjct: 201 GRYSVLTAVGLL 212
>pdb|1SJG|A Chain A, Solution Structure Of T4moc, The Rieske Ferredoxin
Component Of The Toluene 4-Monooxygenase Complex
Length = 112
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Query: 22 ITISQGSNNGSTITC------------CGVQKDQQHPACYPVELKSGDDYY 60
I +S+GS G ITC G+ D A YPVE+K GDD Y
Sbjct: 50 ILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDCCLAEYPVEVK-GDDIY 99
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
Length = 736
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 44 QHPACYPVELKSGDDYYHKYNMTCMEF 70
+H Y +LK+GD+ Y KYN EF
Sbjct: 74 EHDKAYDQQLKAGDNPYLKYNHADAEF 100
>pdb|3PDI|B Chain B, Precursor Bound Nifen
pdb|3PDI|D Chain D, Precursor Bound Nifen
pdb|3PDI|F Chain F, Precursor Bound Nifen
pdb|3PDI|H Chain H, Precursor Bound Nifen
Length = 458
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 74 SPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLR 111
SP PS +G E L + A +V GN+ LA+ R
Sbjct: 354 SPLPSVRVGDLEDLEHAARAGQAQLVIGNSHALASARR 391
>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
Length = 736
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 44 QHPACYPVELKSGDDYYHKYNMTCMEF 70
+H Y +LK+GD+ Y +YN EF
Sbjct: 74 EHDKAYDQQLKAGDNPYLRYNHADAEF 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,975,389
Number of Sequences: 62578
Number of extensions: 240260
Number of successful extensions: 555
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 30
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)