Query psy9916
Match_columns 192
No_of_seqs 128 out of 889
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:54:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 4.7E-48 1E-52 366.3 13.3 182 8-192 217-410 (719)
2 PF03098 An_peroxidase: Animal 100.0 8E-45 1.7E-49 336.1 4.7 162 8-192 69-243 (530)
3 PLN02283 alpha-dioxygenase 100.0 6.5E-37 1.4E-41 287.2 11.1 145 9-192 144-292 (633)
4 PRK15366 type III secretion sy 32.0 28 0.00061 24.7 1.3 12 168-179 61-72 (80)
5 PF13456 RVT_3: Reverse transc 29.2 29 0.00062 23.2 1.0 14 174-187 70-83 (87)
6 PF12424 ATP_Ca_trans_C: Plasm 26.4 17 0.00036 24.8 -0.6 19 170-188 2-20 (66)
7 PF08701 GN3L_Grn1: GNL3L/Grn1 22.9 75 0.0016 22.4 2.2 18 174-191 10-27 (79)
8 PLN00107 FAD-dependent oxidore 20.3 25 0.00054 30.3 -0.8 30 163-192 140-179 (257)
9 PF12342 DUF3640: Protein of u 18.3 71 0.0015 17.8 1.0 13 177-191 5-17 (26)
10 TIGR01677 pln_FAD_oxido plant- 18.3 37 0.0008 32.4 -0.3 31 162-192 445-485 (557)
No 1
>KOG2408|consensus
Probab=100.00 E-value=4.7e-48 Score=366.32 Aligned_cols=182 Identities=41% Similarity=0.799 Sum_probs=154.8
Q ss_pred CCccccccccccc---cccccCCCC--CC-CCCCCCCCCCCCCCCCccceecCCCCCccccCCCeeeeeeccCCCCC--C
Q psy9916 8 EGYQCTPSQFGWY---SITISQGSN--NG-STITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAPS--C 79 (192)
Q Consensus 8 ~~~~~~~m~~gq~---d~~~~~~~~--~~-~~~~CC~~~~~~~~~~C~pI~ip~~Dp~~~~~~~~Cm~f~Rs~~~~~--~ 79 (192)
+.|++++|||||| ||+.++... ++ ..+.||++ .+..+++|+||.||++||+|...+ .||+|+||.+++. +
T Consensus 217 ~~~~~~~mqwgQFi~HDl~~~~~~~~~~~~~~~~~C~~-~~~~~p~C~pi~~p~~dp~~~~~~-~C~~f~Rs~~~~~~~~ 294 (719)
T KOG2408|consen 217 SKFNHMAMQWGQFIDHDLYFTPLSTVQNGELNIRCCNK-PQLPSPPCFPIKIPPNDPYFPSNQ-RCLPFVRSLPACGSGY 294 (719)
T ss_pred cchhHHHHHHHHHhcccccccCCcccccCCccccccCC-CcCCCCcccceecCCCCCccCCcc-cceeceecCCCccccc
Confidence 6699999999999 777766532 22 24567876 458899999999999999997655 8999999999864 4
Q ss_pred CCCcccccccccccccccccCCCCHHHHHHhHcCCC--Ceeeeee--CCCCccCCCCCCCCCCCCcccccCccccccccC
Q psy9916 80 TLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFI--TPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMS 155 (192)
Q Consensus 80 ~~~preqiN~~Ts~iD~S~IYGss~~~~~~LR~~~~--G~Lk~~~--~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~a 155 (192)
..++|||+|++|||||||.||||+.+.+++||.|++ |+|++.. ...++.++|...+++..|...... ....||++
T Consensus 295 ~~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~-~~~~cf~a 373 (719)
T KOG2408|consen 295 NLGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPG-APKPCFTA 373 (719)
T ss_pred cCChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCC-CCCccccc
Confidence 788999999999999999999999999999999998 6777641 246788999988777778654321 34579999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 156 GDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 156 GD~R~Ne~p~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
||.|+|++|+|+++||+|+|||||||++|+++||||+
T Consensus 374 GD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~ 410 (719)
T KOG2408|consen 374 GDERANEQPGLAALHTLFLREHNRIATELKALNPHWS 410 (719)
T ss_pred CccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999999999997
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=8e-45 Score=336.07 Aligned_cols=162 Identities=47% Similarity=0.947 Sum_probs=120.6
Q ss_pred CCccccccccccc---cccccCCCCCCCCCCCCCCCCCCCCCCccceecCCCCCccccCCCeeeeeeccCCCCC----CC
Q psy9916 8 EGYQCTPSQFGWY---SITISQGSNNGSTITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAPS----CT 80 (192)
Q Consensus 8 ~~~~~~~m~~gq~---d~~~~~~~~~~~~~~CC~~~~~~~~~~C~pI~ip~~Dp~~~~~~~~Cm~f~Rs~~~~~----~~ 80 (192)
+.+|+|+|+|||| ||++++. .. . |+ .+++|+||+||++||+|... .+||+|+||.++.. |.
T Consensus 69 ~~~t~l~~~~gQfi~HDi~~~~~-~~-~---C~------~~~~c~~I~ip~~Dp~~~~~-~~c~~~~Rs~~~~~~~~~~~ 136 (530)
T PF03098_consen 69 SGLTALFMQWGQFIDHDITLTPD-SS-S---CS------DHPECFPIPIPPDDPFYRPF-VRCMPFTRSAPAPDPGQSCS 136 (530)
T ss_dssp EEEEHHHHHHHHHHHHHH--BEB-TT-T---HH------CBTTB--EE--TTEHHHHHT-TSEE--B-B-BSSTSSS-SS
T ss_pred CcchHHHHHHHHHHhhhhccccc-cc-c---cc------CCCCccccccCCCcccccCC-CCCcccccccccccCCCCCc
Confidence 3489999999999 8888776 22 2 52 18999999999999999876 89999999998853 33
Q ss_pred CCcccccccccccccccccCCCCHHHHHHhHc-CCCCeeeee----eCCCCccCCCCCCCCC-CCCcccccCcccccccc
Q psy9916 81 LGPREQLNQVSSYLDASVVYGNTEELANRLRT-FQKGELKMF----ITPDGRELLPVSTDPL-DGCNEKQQNAQGRYCFM 154 (192)
Q Consensus 81 ~~preqiN~~Ts~iD~S~IYGss~~~~~~LR~-~~~G~Lk~~----~~~~g~~~lP~~~~~~-~~c~~~~~~~~~~~cf~ 154 (192)
. +|||+|++|+|||||+||||+++++..||+ +++|+||+. ...++..+||....+. ..| .||+
T Consensus 137 ~-~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~----------~~f~ 205 (530)
T PF03098_consen 137 L-PREQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGC----------RCFL 205 (530)
T ss_dssp S-STTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-TSCSSGHH----------GSB-
T ss_pred c-chhhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCcccccccc----------cccc
Confidence 4 999999999999999999999999999999 999999972 1246777888865222 123 5999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 155 SGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 155 aGD~R~Ne~p~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
+||.|+||+|+|++|||||+|||||||++|+++||+|+
T Consensus 206 ~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~ 243 (530)
T PF03098_consen 206 AGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWD 243 (530)
T ss_dssp TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999996
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=6.5e-37 Score=287.17 Aligned_cols=145 Identities=22% Similarity=0.342 Sum_probs=113.9
Q ss_pred Cccccccccccc---cccccCCCCCCCCCCCCCCCCCCCCCCccceecCCCCCccccCCCeeeeeeccCCCCCCCC-Ccc
Q psy9916 9 GYQCTPSQFGWY---SITISQGSNNGSTITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAPSCTL-GPR 84 (192)
Q Consensus 9 ~~~~~~m~~gq~---d~~~~~~~~~~~~~~CC~~~~~~~~~~C~pI~ip~~Dp~~~~~~~~Cm~f~Rs~~~~~~~~-~pr 84 (192)
..|.|+|+|||| |+..... ..+|.+|.+|.+ .......+||+|.||.++++... .++
T Consensus 144 ~~n~~~~~w~Qf~~HD~~~~~~-----------------~~~~~~i~~p~~--~~~~~~~~~~~f~RT~~~~~~~~~~~~ 204 (633)
T PLN02283 144 QFNMIAASWIQFMIHDWIDHLE-----------------DTQQIELTAPKE--VASQCPLKSFKFYKTKEVPTGSPDIKT 204 (633)
T ss_pred cchHHHHHHHHHHHhhhhhhcC-----------------ccccccccCCcc--cccCCcccccccccCCCCCCCCCCCCc
Confidence 489999999999 6543221 112445555532 12233458999999987764222 389
Q ss_pred cccccccccccccccCCCCHHHHHHhHcCCCCeeeeeeCCCCccCCCCCCCCCCCCcccccCccccccccCCCCCCcchH
Q psy9916 85 EQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENT 164 (192)
Q Consensus 85 eqiN~~Ts~iD~S~IYGss~~~~~~LR~~~~G~Lk~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~aGD~R~Ne~p 164 (192)
+|+|++|||||||+||||+++++++||+|++|+||+. .+ .++|... ..||++||.| |++|
T Consensus 205 ~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~--~~--~~l~~~~---------------~~~~~~Gd~r-n~~p 264 (633)
T PLN02283 205 GSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKIS--ED--GLLLHDE---------------DGIPISGDVR-NSWA 264 (633)
T ss_pred cccccccceeecccccCCCHHHHHhhhCCCCCccCcC--CC--CCCCCCc---------------cCCcccCccc-cccH
Confidence 9999999999999999999999999999999999983 22 3555421 1289999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 165 HLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 165 ~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
||++|||||+|||||||++|+++||+|+
T Consensus 265 GL~~lhtLF~REHNrIad~L~~~nP~w~ 292 (633)
T PLN02283 265 GVSLLQALFVKEHNAVCDALKEEYPDFD 292 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999996
No 4
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=31.97 E-value=28 Score=24.65 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHH
Q psy9916 168 SMHLLLARQHNT 179 (192)
Q Consensus 168 ~lhtlf~ReHNr 179 (192)
++.|||.|.||.
T Consensus 61 IIn~i~~ryhn~ 72 (80)
T PRK15366 61 IINIIYYRYHNS 72 (80)
T ss_pred HHHHHHHHHhcc
Confidence 789999999995
No 5
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=29.16 E-value=29 Score=23.15 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q psy9916 174 ARQHNTLARQLATL 187 (192)
Q Consensus 174 ~ReHNriA~~L~~~ 187 (192)
-|+.|+.|+.|++.
T Consensus 70 ~r~~N~~A~~LA~~ 83 (87)
T PF13456_consen 70 PREQNKVADALAKF 83 (87)
T ss_dssp -GGGSHHHHHHHHH
T ss_pred ChHHhHHHHHHHHH
Confidence 49999999999874
No 6
>PF12424 ATP_Ca_trans_C: Plasma membrane calcium transporter ATPase C terminal; InterPro: IPR022141 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The family is found in association with PF00689 from PFAM, PF00122 from PFAM, PF00702 from PFAM, PF00690 from PFAM. There is a conserved QTQ sequence motif. This family is the C-terminal of a calcium transporting ATPase located in the plasma membrane. ; GO: 0005388 calcium-transporting ATPase activity; PDB: 2KNE_B 1CFF_B.
Probab=26.41 E-value=17 Score=24.85 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q psy9916 170 HLLLARQHNTLARQLATLN 188 (192)
Q Consensus 170 htlf~ReHNriA~~L~~~n 188 (192)
++||+|-.|||-.+++-+|
T Consensus 2 q~lw~rgl~r~QtQIrVV~ 20 (66)
T PF12424_consen 2 QILWFRGLNRIQTQIRVVN 20 (66)
T ss_dssp CCCHHHHHHHHHHCH----
T ss_pred CEEEEeCCCccHhHHHHHH
Confidence 4689999999988876544
No 7
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=22.93 E-value=75 Score=22.43 Aligned_cols=18 Identities=39% Similarity=0.745 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCCCC
Q psy9916 174 ARQHNTLARQLATLNPDW 191 (192)
Q Consensus 174 ~ReHNriA~~L~~~nP~W 191 (192)
++||||=.+..++.+|.|
T Consensus 10 v~eh~RK~rK~aKK~~~~ 27 (79)
T PF08701_consen 10 VKEHNRKLRKEAKKNPTW 27 (79)
T ss_pred HHHHhHHHHHHHhcCccc
Confidence 689999999999999998
No 8
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=20.33 E-value=25 Score=30.35 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=24.1
Q ss_pred hHHHHHHHHH----------HHHHHHHHHHHHHHhCCCCC
Q psy9916 163 NTHLTSMHLL----------LARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 163 ~p~L~~lhtl----------f~ReHNriA~~L~~~nP~W~ 192 (192)
...+..+--+ |-+.||..++.|++++|.|+
T Consensus 140 ~~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lYPr~~ 179 (257)
T PLN00107 140 EDAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKYKKAG 179 (257)
T ss_pred HHHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHCcCHH
Confidence 4456666655 78899999999999999995
No 9
>PF12342 DUF3640: Protein of unknown function (DUF3640) ; InterPro: IPR022101 This entry defines the N-terminal domain of the polyprotein of GB virus C; its function is not known.
Probab=18.33 E-value=71 Score=17.83 Aligned_cols=13 Identities=23% Similarity=0.739 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCCCC
Q psy9916 177 HNTLARQLATLNPDW 191 (192)
Q Consensus 177 HNriA~~L~~~nP~W 191 (192)
-||+|+++.+ |+|
T Consensus 5 tnr~crrvdk--dqw 17 (26)
T PF12342_consen 5 TNRMCRRVDK--DQW 17 (26)
T ss_pred HHHHHhhhcc--ccc
Confidence 4888888877 666
No 10
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=18.30 E-value=37 Score=32.42 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=25.1
Q ss_pred chHHHHHHHHH----------HHHHHHHHHHHHHHhCCCCC
Q psy9916 162 ENTHLTSMHLL----------LARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 162 e~p~L~~lhtl----------f~ReHNriA~~L~~~nP~W~ 192 (192)
..+.+..+--| |-+.|++.+++|++++|+|+
T Consensus 445 ~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~ 485 (557)
T TIGR01677 445 YEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNAD 485 (557)
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHH
Confidence 45566667776 67789999999999999995
Done!