Query psy9916
Match_columns 192
No_of_seqs 128 out of 889
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:55:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 4.2E-53 1.4E-57 393.9 5.5 182 7-192 93-288 (595)
2 1d2v_C Myeloperoxidase; heme-p 100.0 8.9E-46 3E-50 336.7 15.4 150 41-192 6-160 (466)
3 1q4g_A Prostaglandin G/H synth 100.0 4.6E-34 1.6E-38 264.3 9.8 106 85-192 188-293 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 2.1E-33 7.1E-38 261.1 6.2 104 87-192 190-293 (587)
5 2wh6_B BCL-2-like protein 11; 17.2 65 0.0022 17.0 1.4 16 174-189 9-24 (26)
6 1pq1_B BCL2-like protein 11; B 13.4 89 0.0031 17.4 1.4 10 177-186 12-21 (33)
7 2kne_B CAM, ATPase, Ca++ trans 13.3 1.1E+02 0.0037 16.6 1.8 18 170-187 5-22 (28)
8 3u3g_D Ribonuclease H, RNAse H 13.3 70 0.0024 22.2 1.3 13 175-187 121-133 (140)
9 3qio_A GAG-POL polyprotein; RN 12.0 39 0.0013 25.0 -0.5 17 171-187 122-143 (150)
10 3hst_B Protein RV2228C/MT2287; 11.3 75 0.0026 22.2 0.9 13 175-187 117-129 (141)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=4.2e-53 Score=393.87 Aligned_cols=182 Identities=31% Similarity=0.522 Sum_probs=152.2
Q ss_pred CCCccccccccccc---cccccCCCC----CCCCCCCCCCCCCCCCCCccceecCCCCCccccCCCeeeeeeccCCCC-C
Q psy9916 7 KEGYQCTPSQFGWY---SITISQGSN----NGSTITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAP-S 78 (192)
Q Consensus 7 ~~~~~~~~m~~gq~---d~~~~~~~~----~~~~~~CC~~~~~~~~~~C~pI~ip~~Dp~~~~~~~~Cm~f~Rs~~~~-~ 78 (192)
++.+|+|+|||||| ||++++.+. .+..+.||. .|..+++|+||+||++||+|...+ +||+|+||.+++ +
T Consensus 93 ~~~~t~~~~~wGQfi~HDi~~t~~~~~~~~~~~~~~C~~--~c~~~~~C~pI~ip~~Dp~~~~~~-~Cm~f~RS~~~~~~ 169 (595)
T 3q9k_A 93 DQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEE--YCIQGDNCFPIMFPKNDPKLKTQG-KCMPFFRAGFVCPT 169 (595)
T ss_dssp EEEEEHHHHHHHHHHHHHHCCCCBCCSCTTCSHHHHHHH--HCCCBTTBCCEECCTTCHHHHHSC-SEECCBCBCBSSCS
T ss_pred CCCchHHHHHHHHHHHhhhhccCccccccccCCCcCccc--cccCCCCceeeeCCCCCCcccCCC-ceeEeecCCCcCCC
Confidence 45699999999999 888776532 123456653 346899999999999999986554 599999999886 5
Q ss_pred CCCC--cccccccccccccccccCCCCHHHHHHhHcCCC--Ceeeeee--CCCCccCCCCCCCCCCCCcccccCcccccc
Q psy9916 79 CTLG--PREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFI--TPDGRELLPVSTDPLDGCNEKQQNAQGRYC 152 (192)
Q Consensus 79 ~~~~--preqiN~~Ts~iD~S~IYGss~~~~~~LR~~~~--G~Lk~~~--~~~g~~~lP~~~~~~~~c~~~~~~~~~~~c 152 (192)
|..+ +|||+|++|||||||+||||+++++++||+|++ |+||+.. ..+|+.+||...+....|.... ...+.+|
T Consensus 170 ~~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~-~~~~~~c 248 (595)
T 3q9k_A 170 PPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFIN-TTARVPC 248 (595)
T ss_dssp SCCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTTBCCCCBCCCSSCHHHHTC-TTTCCCC
T ss_pred CCCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCCccCCCCCCCCCCcccccC-CCCCCcc
Confidence 7666 999999999999999999999999999999998 9999852 1378899999876666674321 1234579
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 153 FMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 153 f~aGD~R~Ne~p~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
|++||.|+||+|+|++|||||+|||||||++|+++||+|+
T Consensus 249 f~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~ 288 (595)
T 3q9k_A 249 FLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 288 (595)
T ss_dssp BCCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred cccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999996
No 2
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=8.9e-46 Score=336.66 Aligned_cols=150 Identities=39% Similarity=0.697 Sum_probs=129.3
Q ss_pred CCCCCCCccceecCCCCCccccCCCeeeeeeccCCCC-CCCCCcccccccccccccccccCCCCHHHHHHhHcCCC--Ce
Q psy9916 41 KDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAP-SCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GE 117 (192)
Q Consensus 41 ~~~~~~~C~pI~ip~~Dp~~~~~~~~Cm~f~Rs~~~~-~~~~~preqiN~~Ts~iD~S~IYGss~~~~~~LR~~~~--G~ 117 (192)
.|.+|++|+||+||++||+|.. +.+||+|+||.+++ ++..++|||+|++|||||||+||||+++++.+||+|++ |+
T Consensus 6 ~c~~~~~C~pI~ip~~Dp~~~~-~~~cl~f~Rs~~~~~~g~~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~ 84 (466)
T 1d2v_C 6 SCVQQPPCFPLKIPPNDPRIKN-QADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGL 84 (466)
T ss_dssp CCCCCTTBCCEECCTTCSSCCC-TTCEECCBCCCBSSTTCSSSCCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCC
T ss_pred cCCCCCCCcceeCCCCCCCcCC-CCcceeeecCccccCCCCCCHHHHhhccccccccccCcCCCHHHHHHHhccCCCCCe
Confidence 3578999999999999999963 45899999999885 45567999999999999999999999999999999987 99
Q ss_pred eeeee--CCCCccCCCCCCCCCCCCcccccCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 118 LKMFI--TPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 118 Lk~~~--~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~aGD~R~Ne~p~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
||+.. ..+|+.+||........|.... ...+..||++||.|+||+|+|++|||||+|||||||++|+++||+|+
T Consensus 85 Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~-~~~~~~cf~~GD~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~ 160 (466)
T 1d2v_C 85 LAVNQRFQDNGRALLPFDNLHDDPCLLTN-RSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 160 (466)
T ss_dssp BCCCSSCCBTTBCCCCBCCCTTCSGGGGC-TTTCCCCBCCSSTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred eccCCccCCCCCcCCCCCCCCCCcccccc-cCCCcchhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99842 1267889999766556675321 12345699999999999999999999999999999999999999996
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=4.6e-34 Score=264.29 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=88.2
Q ss_pred cccccccccccccccCCCCHHHHHHhHcCCCCeeeeeeCCCCccCCCCCCCCCCCCcccccCccccccccCCCCCCcchH
Q psy9916 85 EQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENT 164 (192)
Q Consensus 85 eqiN~~Ts~iD~S~IYGss~~~~~~LR~~~~G~Lk~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~aGD~R~Ne~p 164 (192)
+++|++|||||||+||||+++++++||+|++|+||+.. .+|+.+||...+....+... .......||++||.|+||+|
T Consensus 188 ~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~-~~g~~~~P~~~~~~~~~~~~-~~~~~~~cf~~GD~R~ne~p 265 (553)
T 1q4g_A 188 GFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM-LNGEVYPPSVEEAPVLMHYP-RGIPPQSQMAVGQEVFGLLP 265 (553)
T ss_dssp TBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEE-ETTEEECCBTTTSCCCCCCC-TTCCGGGSBCCSSTTGGGCH
T ss_pred hhcccccccccccccCCCCHHHHHhhhcCCCCEecccC-CCCccCCCccCCCCCcccCC-CCCCchhccccCccccCcCH
Confidence 67899999999999999999999999999999999853 36888888754322111110 01123469999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 165 HLTSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 165 ~L~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
+|++|||||+|||||||++|+++||+|+
T Consensus 266 ~L~~lhtlflReHNria~~L~~~nP~W~ 293 (553)
T 1q4g_A 266 GLMLYATIWLREHNRVCDLLKAEHPTWG 293 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999996
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=99.98 E-value=2.1e-33 Score=261.07 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=86.8
Q ss_pred cccccccccccccCCCCHHHHHHhHcCCCCeeeeeeCCCCccCCCCCCCCCCCCcccccCccccccccCCCCCCcchHHH
Q psy9916 87 LNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHL 166 (192)
Q Consensus 87 iN~~Ts~iD~S~IYGss~~~~~~LR~~~~G~Lk~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~~cf~aGD~R~Ne~p~L 166 (192)
.|++|||||||+||||+++++++||+|++|+||++. .+|+.+||...+....|.... ......||++||.|+||+|+|
T Consensus 190 ~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~-~~g~~~pP~~~~~~~~~~~~~-~~~~~~cf~~GD~R~ne~pgL 267 (587)
T 3nt1_A 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQV-IGGEVYPPTVKDTQVEMIYPP-HIPENLQFAVGQEVFGLVPGL 267 (587)
T ss_dssp BSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEE-ETTEEECCBHHHHCCCCCCCT-TSCGGGCBCCSSTTTTSCHHH
T ss_pred ccCccceeeeccCCCCCHHHHHhccCCCCCeeeeec-CCCccCCCCCCCcccccccCC-CCCcccccccCCcccccChHH
Confidence 688999999999999999999999999999999864 578889988643222333211 112346999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9916 167 TSMHLLLARQHNTLARQLATLNPDWD 192 (192)
Q Consensus 167 ~~lhtlf~ReHNriA~~L~~~nP~W~ 192 (192)
++|||||+|||||||++|+++||+|+
T Consensus 268 ~alhtlflREHNriA~~L~~~nP~W~ 293 (587)
T 3nt1_A 268 MMYATIWLREHNRVCDILKQEHPEWG 293 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999996
No 5
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=17.21 E-value=65 Score=17.05 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhCC
Q psy9916 174 ARQHNTLARQLATLNP 189 (192)
Q Consensus 174 ~ReHNriA~~L~~~nP 189 (192)
.+|--||.+++.+.+|
T Consensus 9 AqELRRIGDeFN~~y~ 24 (26)
T 2wh6_B 9 AQELRRIGDEFNAYYA 24 (26)
T ss_dssp HHHHHHHHHHHTTC--
T ss_pred HHHHHHHhHHHhhhcc
Confidence 4555666666655544
No 6
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=13.42 E-value=89 Score=17.44 Aligned_cols=10 Identities=0% Similarity=0.152 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy9916 177 HNTLARQLAT 186 (192)
Q Consensus 177 HNriA~~L~~ 186 (192)
--||.+++..
T Consensus 12 LRRIGDeFNa 21 (33)
T 1pq1_B 12 LRRIGDEFNE 21 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHhhc
Confidence 3444444443
No 7
>2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide, calcium pump, calmodulin, acetylation, calcium, isopeptide bond, methylation; NMR {Homo sapiens}
Probab=13.34 E-value=1.1e+02 Score=16.62 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy9916 170 HLLLARQHNTLARQLATL 187 (192)
Q Consensus 170 htlf~ReHNriA~~L~~~ 187 (192)
++||+|-=|||-.++.-+
T Consensus 5 qiLW~RgL~riqtQ~rvi 22 (28)
T 2kne_B 5 QILWFRGLNRIQTQIKVV 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeccHHHHHHHHHHH
Confidence 689999999998776544
No 8
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=13.28 E-value=70 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHh
Q psy9916 175 RQHNTLARQLATL 187 (192)
Q Consensus 175 ReHNriA~~L~~~ 187 (192)
|+.|..||+|++.
T Consensus 121 ~~~N~~AD~LA~~ 133 (140)
T 3u3g_D 121 REKNARADELVNE 133 (140)
T ss_dssp GGGGHHHHHHHHH
T ss_pred chhhHHHHHHHHH
Confidence 6889999999874
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=12.01 E-value=39 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.2
Q ss_pred HHHHHHH-----HHHHHHHHHh
Q psy9916 171 LLLARQH-----NTLARQLATL 187 (192)
Q Consensus 171 tlf~ReH-----NriA~~L~~~ 187 (192)
..|++-| |..||+|++.
T Consensus 122 ~~wV~gH~g~~~Ne~AD~LA~~ 143 (150)
T 3qio_A 122 LAWVPAHKGIGGNEQVDKLVSA 143 (150)
T ss_dssp EEECCTTSCCHHHHHHHHHHHT
T ss_pred EEEccCcCCChhHHHHHHHHHH
Confidence 3356677 9999999875
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=11.33 E-value=75 Score=22.25 Aligned_cols=13 Identities=46% Similarity=0.460 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHh
Q psy9916 175 RQHNTLARQLATL 187 (192)
Q Consensus 175 ReHNriA~~L~~~ 187 (192)
|+.|..||+|++.
T Consensus 117 ~~~N~~AD~LA~~ 129 (141)
T 3hst_B 117 RARNTYADRLAND 129 (141)
T ss_dssp GGGCHHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 6899999999864
Done!