RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9916
(192 letters)
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 177 bits (451), Expect = 2e-53
Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 20/164 (12%)
Query: 35 TCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPAPSCT---LGPREQLNQVS 91
CC HP C+P+ + GD Y+ + C+ F RS+PA PREQ+NQ++
Sbjct: 93 PCCA----DNHPECFPIPVPPGDPYFSPFG-RCLPFFRSAPACGTGPSCNLPREQINQLT 147
Query: 92 SYLDASVVYGNTEELANRLRTFQKGELKM---FITPDGRELLPVSTDPLDGCNEKQQNAQ 148
SYLD S VYG++EE A++LRTF+ G+LK+ F P+G+ LLP GC
Sbjct: 148 SYLDLSQVYGSSEEEADKLRTFKDGKLKVNGEFPPPNGKGLLPAPPPGPSGC-------- 199
Query: 149 GRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
CF++GD+R NEN LT++H L R+HN +A +L LNP W
Sbjct: 200 -LSCFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWS 242
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 170 bits (432), Expect = 9e-52
Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Query: 84 REQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEK 143
REQLNQV+S+LD S VYG++EE A +LRTF+ G LK +GRELLP S +P D C
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKTQRR-NGRELLPFSNNPTDDC--- 56
Query: 144 QQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
++ G+ CF++GD R NE LTSMH L R+HN +A +L LNP WD
Sbjct: 57 SLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWD 105
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 136 bits (345), Expect = 2e-38
Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 18/150 (12%)
Query: 56 GDDYYHKYNMTCMEFIRSSPAPSC----------TLGPREQLNQVSSYLDASVVYGNTEE 105
D + C+EF+RSS C ++ PREQ+NQ++SY+DAS VYG+++E
Sbjct: 3 DDPRRRGHR--CIEFVRSSAV--CGSGSTSLLFNSVTPREQINQLTSYIDASNVYGSSDE 58
Query: 106 LANRLR--TFQKGELKMFI-TPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANE 162
A LR +G L++ I + G+ LLP D C N CF++GD RANE
Sbjct: 59 EALELRDLASDRGLLRVGIVSEAGKPLLPFERDSPMDCRR-DPNESPIPCFLAGDHRANE 117
Query: 163 NTHLTSMHLLLARQHNTLARQLATLNPDWD 192
LTSMH L R+HN +A +L LNP WD
Sbjct: 118 QLGLTSMHTLWLREHNRIASELLELNPHWD 147
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 128 bits (323), Expect = 2e-35
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 82 GPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCN 141
PREQ+N +++Y+D S VYG+ EE A+ LR+F G+LK + G +LLP + L N
Sbjct: 46 NPREQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAG-DLLPFNEAGLPNDN 104
Query: 142 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
F++GD RANEN LT++H L R+HN LA +LA NP
Sbjct: 105 GGVPADDL---FLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLS 152
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 121 bits (306), Expect = 1e-32
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 24/187 (12%)
Query: 21 SITISQGSNNGSTITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA---- 76
S T+ GS T C + + Q+P C+P++L S D C+ F RSS
Sbjct: 83 SRTMFIGS------TDCKMTCENQNP-CFPIQLPSEDP--RILGRACLPFFRSSAVCGTG 133
Query: 77 -------PSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFI----TPD 125
PREQ+N ++S++DAS VYG+T LA LR + + +
Sbjct: 134 DTSTLFGNLSLANPREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDS 193
Query: 126 GRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLA 185
GR+ LP + + CN + CF++GD RA+E LT+ H L R+HN LAR L
Sbjct: 194 GRDYLPFQPEEVSSCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALK 253
Query: 186 TLNPDWD 192
++NP WD
Sbjct: 254 SINPHWD 260
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 107 bits (269), Expect = 7e-28
Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 76 APSCTLGP--REQLNQVSSYLDASVVYGNTEELANRLR--TFQKGELKMF--ITPDGREL 129
+CT REQ+N ++S++DAS+VYG+ LA LR T Q G L + T +G L
Sbjct: 2 CGACTSKRNVREQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGLAL 61
Query: 130 LPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNP 189
LP D C + + CF++GD R +EN L ++H LL R+HN LAR+L LNP
Sbjct: 62 LPFENLHNDPCALRNT-SANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNP 120
Query: 190 DWD 192
WD
Sbjct: 121 HWD 123
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 99.7 bits (249), Expect = 1e-24
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 42 DQQHPACYP----VELKSGDDYYHKYNM--TCMEFIRS--------SPAPSCTLGPREQL 87
D P C P +E+ GD + + F RS SP PREQL
Sbjct: 80 DASRPGCPPEYFNIEIPKGDPVFDPECTGNIELPFQRSRYDKNTGYSPN-----NPREQL 134
Query: 88 NQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGREL----LPVSTDPLDGCNEK 143
N+V+S++D S +YG+++ ++ LR+F G L LP++ +P
Sbjct: 135 NEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRLPLA-NPPPPSYHG 193
Query: 144 QQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDW 191
+ + + G+ R NEN L + +L R HN LA+++A +PDW
Sbjct: 194 TRGPERLFKL--GNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDW 239
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 97.1 bits (242), Expect = 3e-24
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 86 QLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM--FITPD-GRELLPVSTDPLDGC-N 141
QLN + YLD S +YG+ ++A LRTF+ G LK P G ELLP +
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFNNPNPSMGTI 60
Query: 142 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
CF++GD R NEN L ++H L R+HN LA +L +P+WD
Sbjct: 61 GLPPT----RCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWD 107
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 58.8 bits (143), Expect = 2e-10
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 82 GPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCN 141
GP +N + + D S +YG+TEE RLRTF K+ + DG LLPV D G
Sbjct: 82 GPPTYINTNTHWWDGSQIYGSTEEAQKRLRTFPPDG-KLKLDADG--LLPV--DEHTGLP 136
Query: 142 EKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
++G N L+ +H L R+HN + L PDW
Sbjct: 137 ------------LTGFND-NWWVGLSLLHTLFVREHNAICDALRKEYPDWS 174
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 52.7 bits (127), Expect = 2e-08
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 95 DASVVYGNTEELANRLRTFQKGELKMFIT----------------PDGRELLPVSTDPLD 138
D S +YG TE + LR F+ G+LK + + L+P D L
Sbjct: 132 DLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPLVPPLGDELT 191
Query: 139 GCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
E + F G R N L ++ + R+HN + L +PDWD
Sbjct: 192 PEREAKL-------FAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWD 238
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 45.9 bits (109), Expect = 4e-06
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 87 LNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGREL-----LPVSTD 135
LN + + D SV+YG+ E+ R+RTF+ G+LK I+ DG L +P+S D
Sbjct: 207 LNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLK--ISEDGLLLHDEDGIPISGD 258
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 44.3 bits (105), Expect = 2e-05
Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 28/131 (21%)
Query: 82 GPREQLNQVSSYLDASVVYGNTEELANRLRTFQ-----KGEL------KMFITPDGR--- 127
G E N + ++D + YG+ LR + G L T
Sbjct: 79 GEGEHTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATGRLLEGATGGSARTGHAFLDD 138
Query: 128 -----ELLPVSTDPLDGCNE--KQQNAQGRY-------CFMSGDARANENTHLTSMHLLL 173
D E A G Y F++GD R NEN LT++H +
Sbjct: 139 IAHNAAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAHFVAGDGRVNENIGLTAVHTVF 198
Query: 174 ARQHNTLARQL 184
R+HN L Q+
Sbjct: 199 HREHNRLVDQI 209
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 88 NQVSSYLDASVVYGNTEELANRLRTFQKGELK 119
N SSYLD S +YG+ +E N++RT + G+LK
Sbjct: 118 NNTSSYLDLSPLYGSNQEEQNKVRTMKDGKLK 149
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 35.8 bits (83), Expect = 0.010
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 83 PREQLNQVSSYLDASVVYGNTEELANRLRTFQK--GELKMFITPDGRELLPVSTDPLDGC 140
P E N + LD VYG + + L K+ + + P DG
Sbjct: 76 PAELRNFRTPALDLDSVYGGGPDGSPYLYDQATPNDGAKLRVGRE--SPGGPGGLPGDGA 133
Query: 141 NEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
+ +N QG + GD R +EN + +HL R HN + L D
Sbjct: 134 RDLPRNGQGTA--LIGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGD 183
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain. This short domain is
found in one or two copies at the amino terminus of ClpA
and ClpB proteins from bacteria and eukaryotes. The
function of these domains is uncertain but they may form
a protein binding site.
Length = 53
Score = 28.3 bits (64), Expect = 0.36
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 158 ARANENTHLTSMHLLLA--RQHNTLARQL 184
A+ + ++ + HLLLA + + +A +L
Sbjct: 5 AKELGHQYIGTEHLLLALLEEDDGIAARL 33
>gnl|CDD|226675 COG4222, COG4222, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 391
Score = 28.2 bits (63), Expect = 3.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 120 MFITPDGRELLPVSTDPLDGCNEKQQNAQGRYC 152
+ ITPDG++L + L K G
Sbjct: 205 LAITPDGKKLYALLEGALAQDGNKADPTGGSPL 237
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 27.5 bits (61), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 158 ARANENTH--LTSMHLLLARQHNTLARQ 183
ARA E+ H +T HLLLA N AR+
Sbjct: 15 ARAREHRHEFMTVEHLLLALLSNPSARE 42
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 433
Score = 26.9 bits (60), Expect = 7.2
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 68 MEFIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKM 120
+++ + LG N +++ A + N E + LR+F+ ++
Sbjct: 248 GLYLKPNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRL 300
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.407
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,286,393
Number of extensions: 795894
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 20
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)