RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9916
(192 letters)
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 157 bits (398), Expect = 2e-46
Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 9/164 (5%)
Query: 34 ITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA-PSCTLGPREQLNQVSS 92
+ C Q P C+P+++ D C+ F RS PA P + R Q+N ++S
Sbjct: 1 VNCETSCV--QQPPCFPLKIPPNDPRIKN-QADCIPFFRSCPACPGSNITIRNQINALTS 57
Query: 93 YLDASVVYGNTEELANRLRTFQKGELKMFITP----DGRELLPVSTDPLDGCNEKQQNAQ 148
++DAS+VYG+ E LA LR + + +GR LLP D C +
Sbjct: 58 FVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCL-LTNRSA 116
Query: 149 GRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
CF++GD R++E LTSMH LL R+HN LA +L +LNP WD
Sbjct: 117 RIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 160
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 125 bits (315), Expect = 5e-34
Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 21 SITISQGSNNGSTITCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA---P 77
+ + Q C+P+ D CM F R+ P
Sbjct: 112 DFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQG-KCMPFFRAGFVCPTP 170
Query: 78 SCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPD----GRELLPVS 133
REQ+N V+S+LDAS+VYG+ LA+RLR M + + G LP +
Sbjct: 171 PYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFN 230
Query: 134 TDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
C CF++GD RA+E L + H LL R+HN LAR+L LNP W+
Sbjct: 231 NKKPSPCEF-INTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWN 288
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 115 bits (290), Expect = 1e-30
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 67 CMEFIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDG 126
+F ++S + +D +YG+ E +LR F+ G+LK +G
Sbjct: 175 THQFFKTSGKM-----GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQ-MLNG 228
Query: 127 RELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLAT 186
P + + + + G L + R+HN + L
Sbjct: 229 EVYPPSVEEAPVLMHY-PRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKA 287
Query: 187 LNPDWD 192
+P W
Sbjct: 288 EHPTWG 293
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 114 bits (287), Expect = 4e-30
Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 7/145 (4%)
Query: 53 LKSGDDYYHKYNMTCM-----EFIRSSPAPSCTLGPREQLNQVSSYLDASVVYGNTEELA 107
L + M + + + +D + +YG T +
Sbjct: 151 LLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQ 210
Query: 108 NRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNEKQQNAQGRYCFMSGDARANENTHLT 167
++LR F+ G+LK G P D + F G L
Sbjct: 211 HKLRLFKDGKLKYQ-VIGGEVYPPTVKDTQVEMI-YPPHIPENLQFAVGQEVFGLVPGLM 268
Query: 168 SMHLLLARQHNTLARQLATLNPDWD 192
+ R+HN + L +P+W
Sbjct: 269 MYATIWLREHNRVCDILKQEHPEWG 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 47/270 (17%), Positives = 74/270 (27%), Gaps = 116/270 (42%)
Query: 16 QFGWYSITI-SQGSNNG------STITCC--GVQKDQQHPACYPVELKSGDDYY---HKY 63
Q Y +T G G T G+ A E S + ++ K
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-----TAVAIAETDSWESFFVSVRKA 299
Query: 64 NMTCMEFI--RS---------SPA------------PSCTLG----PREQL----NQVSS 92
+T + FI R P+ PS L +EQ+ N+ +S
Sbjct: 300 -ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 93 YLDAS--------------VVYGNTEELANRLRTFQKGELKMFITPDG----------RE 128
+L A VV G + L T +K + P G R+
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-----APSGLDQSRIPFSERK 413
Query: 129 L------LPVSTDP-----LDGCNEKQQNAQGR--------------YCFMSG-DARANE 162
L LPV++ P L ++ + Y G D R
Sbjct: 414 LKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 163 NTHLTSMHLLLARQHNTLARQLATLNPDWD 192
+ + R + + L W+
Sbjct: 473 GS-------ISER----IVDCIIRLPVKWE 491
Score = 28.5 bits (63), Expect = 1.8
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 69 EFIRSSPAPSCTLGPREQ-----------LNQVSSYLDASVVYGNTEELANRLRTFQKGE 117
+F + P P+ ++ L VSS ++ S V + L L F+
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 118 LK 119
L+
Sbjct: 96 LE 97
Score = 26.6 bits (58), Expect = 7.7
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 23/103 (22%)
Query: 5 MEKEGYQCTP--------------SQFGWYSIT-ISQGSNNGSTITCC-GVQKDQQHPAC 48
M + Y+ + +G+ SI I NN +T G +K ++
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGF-SILDIVI--NNPVNLTIHFGGEKGKRIREN 1687
Query: 49 YP-VELKSGDDYYHKYNMTCMEFIRSSPAPSCTL-GPREQLNQ 89
Y + ++ D K E S S T + L+
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHST--SYTFRSEKGLLSA 1728
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 26.1 bits (58), Expect = 6.4
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 104 EELANRLRTFQKGELKMFITPDGRELL 130
N + + G +++++ + +E
Sbjct: 42 NTERNLVFLVKSGRVRVYLAYEDKEFT 68
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 26.3 bits (58), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 22 ITISQGSNNGSTITCCGVQKDQQHPACYPVEL 53
+ IS +NG + C + + HPA +P +L
Sbjct: 210 LQISNSESNGQYLANCKLMGIKAHPARFPAKL 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.407
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,822,123
Number of extensions: 149712
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)