RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9916
         (192 letters)



>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score =  144 bits (365), Expect = 1e-41
 Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 35  TCCGVQKDQQHPACYPVELKSGDDYYHKYNMTCMEFIRSSPA-PSCTLGPREQLNQVSSY 93
                    Q P C+P+++   D         C+ F RS PA P   +  R Q+N ++S+
Sbjct: 104 AVNCETSCVQQPPCFPLKIPPNDPRIKN-QADCIPFFRSCPACPGSNITIRNQINALTSF 162

Query: 94  LDASVVYGNTEELANRLRTFQKGELKM----FITPDGRELLPVSTDPLDGCNEKQQNAQG 149
           +DAS+VYG+ E LA  LR        +        +GR LLP      D C    ++A  
Sbjct: 163 VDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSA-R 221

Query: 150 RYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
             CF++GD R++E   LTSMH LL R+HN LA +L +LNP WD
Sbjct: 222 IPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWD 264


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score =  123 bits (310), Expect = 6e-34
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 78  SCTLGPREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPL 137
           +           +   +D + +YG T +  ++LR F+ G+LK      G    P   D  
Sbjct: 140 TDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQ-VIGGEVYPPTVKDTQ 198

Query: 138 DGCNEKQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
                   +      F  G         L     +  R+H  +   L   +P+W 
Sbjct: 199 VEMIY-PPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWG 252


>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 511

 Score =  116 bits (293), Expect = 2e-31
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 83  PREQLNQVSSYLDASVVYGNTEELANRLRTFQKGELKMFITPDGRELLPVSTDPLDGCNE 142
                  +   +D   +YG+  E   +LR F+ G+LK        E+ P S +       
Sbjct: 144 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKY--QMLNGEVYPPSVEEAPVLMH 201

Query: 143 KQQNAQGRYCFMSGDARANENTHLTSMHLLLARQHNTLARQLATLNPDWD 192
             +    +     G         L     +  R+HN +   L   +P W 
Sbjct: 202 YPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWG 251


>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
           {Synechococcus sp. strain PCC 7942 (Anacystis nidulans
           R2) [TaxId: 1140]}
          Length = 242

 Score = 26.1 bits (56), Expect = 2.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 108 NRLRTFQKGELKMFITPDGRELLPVS 133
            R  +  KGE    IT  G  + P+ 
Sbjct: 212 LRGTSHMKGEYPFTITDHGINIFPLG 237


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,630
Number of extensions: 30341
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 8
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)