BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9917
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D3D9|ATPD_MOUSE ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d
PE=1 SV=1
Length = 168
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 96/127 (75%)
Query: 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
QM FT AS +VF+ + NVKQVDVP+ +GAFGIL +HVPTL +L+PG++ V+ +G + K
Sbjct: 37 QMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTK 96
Query: 80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
FVSSG++TVN DSSVQ++AEEA +D LD AAR L KAQSELS A+ E A+AE QI
Sbjct: 97 YFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIR 156
Query: 140 VEVAEAL 146
+E EAL
Sbjct: 157 IEANEAL 163
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 53/71 (74%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG++TVN DSSVQ++AEEA +D LD AAR L KAQSELS A+ E A+AE QI
Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQI 155
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 156 RIEANEALVKA 166
>sp|P35434|ATPD_RAT ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus
GN=Atp5d PE=1 SV=2
Length = 168
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 94/127 (74%)
Query: 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
QM FT AS +VF+ NV+QVDVP+ +GAFGIL +HVPTL +L+PG++ V+ +G + K
Sbjct: 37 QMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTK 96
Query: 80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
FVSSG++TVN DSSVQ++AEE +D LD AAR L KAQSELS A+ E A+AE QI
Sbjct: 97 YFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIR 156
Query: 140 VEVAEAL 146
+E EAL
Sbjct: 157 IEANEAL 163
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 52/71 (73%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG++TVN DSSVQ++AEE +D LD AAR L KAQSELS A+ E A+AE QI
Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQI 155
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 156 RIEANEALVKA 166
>sp|P05630|ATPD_BOVIN ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D
PE=1 SV=2
Length = 168
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 92/126 (73%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
M FT AS +VF+ + NV+QVDVP+ +GAFGIL HVPTL +L+PG++ V+ +G + K
Sbjct: 38 MSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKY 97
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
FVSSG++TVN DSSVQ++AEEA +D LD AA+ L KAQSEL A+ E +AE QI +
Sbjct: 98 FVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRI 157
Query: 141 EVAEAL 146
E EAL
Sbjct: 158 EANEAL 163
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG++TVN DSSVQ++AEEA +D LD AA+ L KAQSEL A+ E +AE QI
Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 155
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 156 RIEANEALVKA 166
>sp|P30049|ATPD_HUMAN ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D
PE=1 SV=2
Length = 168
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 91/128 (71%)
Query: 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQ 78
+QM FT AS +VF+ NV+QVDVP+ +GAFGIL HVPTL +L+PG++ V+ +G +
Sbjct: 36 NQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95
Query: 79 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 138
K FVSSG+I VN DSSVQ++AEEA +D LD AA+ L KAQ+EL + E +AE QI
Sbjct: 96 KYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQI 155
Query: 139 AVEVAEAL 146
+E EAL
Sbjct: 156 RIEANEAL 163
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG+I VN DSSVQ++AEEA +D LD AA+ L KAQ+EL + E +AE QI
Sbjct: 96 KYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQI 155
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 156 RIEANEALVKA 166
>sp|Q09544|ATPD_CAEEL ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans
GN=F58F12.1 PE=1 SV=1
Length = 163
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 100/156 (64%), Gaps = 11/156 (7%)
Query: 1 MAARLVTSATRLARRGYA----------DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAF 50
M AR + + +A+RGYA +++ T AS + ++N VKQVDVP+ +G
Sbjct: 1 MLARTIQRFSVVAKRGYAAAAPAANANPEELRLTFASPDTAVFSNAVVKQVDVPTLAGMV 60
Query: 51 GILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDA 110
G+L NHVPT+ +LKPGV++V EG Q++FVSSGT++VN D S Q++AEE V+ +D
Sbjct: 61 GVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDE 120
Query: 111 SAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
SAAR L AQ S SE A+AEAQI EVAEAL
Sbjct: 121 SAARAELDAAQ-RASGEGSEVARAEAQIRAEVAEAL 155
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
++FVSSGT++VN D S Q++AEE V+ +D SAAR L AQ S SE A+AEAQI
Sbjct: 89 RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ-RASGEGSEVARAEAQI 147
Query: 207 AVEVAEALVAAAS 219
EVAEAL+ AA+
Sbjct: 148 RAEVAEALIKAAT 160
>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus
GN=atpD PE=2 SV=1
Length = 162
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 2 AARLVTSATRLARRGYA---DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVP 58
AAR T+ RRGYA D++ +LA +K +++Q+V QV++P+ SG GIL +HVP
Sbjct: 10 AARRATTHVAYTRRGYAEISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVP 69
Query: 59 TLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLS 118
++ L+PGV+ V E G SQK FVS G TV+ ++ + I EA P++ A R L
Sbjct: 70 SIEPLRPGVVEVVEDSG-SQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQ 128
Query: 119 KAQSELSSASSETAKAEAQIAVEVAEALK 147
+A + + SE K EAQI EV EAL+
Sbjct: 129 EANKVAAGSGSEADKMEAQIEAEVYEALQ 157
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 140 VEVAE---ALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS 196
VEV E + K FVS G TV+ ++ + I EA P++ A R L +A + +
Sbjct: 79 VEVVEDSGSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSG 138
Query: 197 SETAKAEAQIAVEVAEAL 214
SE K EAQI EV EAL
Sbjct: 139 SEADKMEAQIEAEVYEAL 156
>sp|P56525|ATPD_NEUCR ATP synthase subunit delta, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=atp-16 PE=3 SV=2
Length = 165
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 6/152 (3%)
Query: 2 AARLVTSATR--LARRGYA----DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPN 55
A R+ +A R L RRGYA D++ +L+ ++ Y +Q+V QV++P+ SG G+L N
Sbjct: 10 ALRVRPTAVRAPLQRRGYAEAVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLAN 69
Query: 56 HVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARD 115
HVP++ LKPG++ V E G +++ F+S G V S + I A E + ++ A A R
Sbjct: 70 HVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRA 129
Query: 116 VLSKAQSELSSASSETAKAEAQIAVEVAEALK 147
+++AQ +S S+ AEAQ+ +EV E+L+
Sbjct: 130 QIAEAQKIVSGGGSQQDIAEAQVELEVLESLQ 161
>sp|Q757N0|ATPD_ASHGO ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATP16 PE=3 SV=1
Length = 158
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 13 ARRGYA----DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVI 68
ARR YA D + A ++ + VKQV++P +G GIL NHVP + L PGV+
Sbjct: 18 ARRTYAEAAADALKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVV 77
Query: 69 TVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS 128
V E S+K FVS G TV DS++ I + EA P+DS A R +L++AQ +A
Sbjct: 78 EVLEGSE-SKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAEAQKNAGAAD 136
Query: 129 SETAKAEAQIAVEVAEALK 147
S A AEA I +EV EAL+
Sbjct: 137 SRVA-AEASIQIEVLEALQ 154
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 140 VEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSET 199
+E +E+ K FVS G TV DS++ I + EA P+DS A R +L++AQ +A S
Sbjct: 80 LEGSESKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAEAQKNAGAADSRV 139
Query: 200 AKAEAQIAVEVAEALVAA 217
A AEA I +EV EAL AA
Sbjct: 140 A-AEASIQIEVLEALQAA 156
>sp|Q96252|ATP4_ARATH ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana
GN=At5g47030 PE=1 SV=1
Length = 203
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 34 TNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDS 93
T + V V +P+ +G G+LP HVPT+A LKPG+++V+E V +K F+SSG ++ +S
Sbjct: 86 TGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDV-KKYFLSSGFAFLHANS 144
Query: 94 SVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
IIA EA P+D +D S + L++ Q +L+SA+++ KAEAQI VEV A+
Sbjct: 145 VADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAI 197
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K F+SSG ++ +S IIA EA P+D +D S + L++ Q +L+SA+++ KAEAQI
Sbjct: 130 KYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQI 189
Query: 207 AVEVAEALVAAAS 219
VEV A+ AA S
Sbjct: 190 GVEVHSAINAALS 202
>sp|Q55F42|ATPD_DICDI ATP synthase subunit delta, mitochondrial OS=Dictyostelium
discoideum GN=atp5D PE=3 SV=1
Length = 170
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
+D + F+L S ++ Y ++ + V +P G FG+ NHVP +A LKPGVI + G
Sbjct: 34 SDLLTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDL 93
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
+K F+S G VN D+S I EA P+D LDA ++ L++ + A E AKA A
Sbjct: 94 EKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVAL 153
Query: 138 IAVEVAEAL 146
I +E + +
Sbjct: 154 IGLETYQQM 162
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%)
Query: 137 QIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS 196
QI E + K F+S G VN D+S I EA P+D LDA ++ L++ + A
Sbjct: 85 QINHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQ 144
Query: 197 SETAKAEAQIAVEVAEALVAAAS 219
E AKA A I +E + + A
Sbjct: 145 EENAKAVALIGLETYQQMAFACG 167
>sp|Q40089|ATP4_IPOBA ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1
SV=1
Length = 200
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 35 NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSS 94
+ V V +P+ +G G+LP HV T+A LKPGV++V+E VS K FVS G ++ +S
Sbjct: 84 GKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVS-KYFVSGGFAFIHANSF 142
Query: 95 VQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
IIA EA P+D +DA+ + L++ +L++AS++ KAEAQI V+V AL
Sbjct: 143 ADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSAL 194
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVS G ++ +S IIA EA P+D +DA+ + L++ +L++AS++ KAEAQI
Sbjct: 127 KYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQI 186
Query: 207 AVEVAEALVAA 217
V+V AL AA
Sbjct: 187 GVDVHSALNAA 197
>sp|P78700|ATPD_KLULA ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ATP16 PE=3 SV=2
Length = 159
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 10 TRLARRGYADQMD----FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKP 65
T +A+R YA+ D A ++ ++ V QV++P+ SG GIL NHVPT+ L P
Sbjct: 16 TVVAKRTYAEAADGALKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVP 75
Query: 66 GVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELS 125
GV+ V E S+K FVS G TV DS++ I + EA P++S R +L++AQ +S
Sbjct: 76 GVVEVLEGSS-SKKFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVS 134
Query: 126 SASSETAKAEAQIAVEVAEALK 147
SA A A I +EV EAL+
Sbjct: 135 SADEVAAAEAA-IQLEVLEALQ 155
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVS G TV DS++ I + EA P++S R +L++AQ +SSA A A I
Sbjct: 88 KFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSADEVAAAEAA-I 146
Query: 207 AVEVAEALVAA 217
+EV EAL AA
Sbjct: 147 QLEVLEALQAA 157
>sp|Q12165|ATPD_YEAST ATP synthase subunit delta, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ATP16 PE=1
SV=1
Length = 160
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
+ A ++ Y+ V QV++P+ SG G+L NHVPT+ L PGV+ V E S+K
Sbjct: 32 LKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSN-SKKF 90
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
F+S G TV DS + + A EA P++S +++L++A+ +SS+ + A AEA I V
Sbjct: 91 FISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREA-AEAAIQV 149
Query: 141 EVAEALK 147
EV E L+
Sbjct: 150 EVLENLQ 156
>sp|Q41000|ATP4_PEA ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3
SV=1
Length = 197
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Query: 39 KQVD---VPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV 95
K+VD +P+ +G G+LP HV T+A LKPGV+TV E + K FVSSG ++ +S
Sbjct: 82 KEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTT-KYFVSSGFRFIHANSVA 140
Query: 96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
IIA EA PV+ LD + L + +L+SA+++ K EAQI ++V AL
Sbjct: 141 DIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSAL 191
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 141 EVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETA 200
E + K FVSSG ++ +S IIA EA PV+ LD + L + +L+SA+++
Sbjct: 118 EGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLE 177
Query: 201 KAEAQIAVEVAEALVAA 217
K EAQI ++V AL +A
Sbjct: 178 KREAQIGIDVDSALNSA 194
>sp|Q9P6R6|ATPD_SCHPO ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=atp16 PE=3 SV=2
Length = 167
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 7/138 (5%)
Query: 15 RGYA------DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVI 68
RGYA +++ ++A + Y V QVD+P+ G GIL +HVP + LKPGVI
Sbjct: 26 RGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVI 85
Query: 69 TVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS 128
+V + K F+S G + + I EA+ ++ +S A +L K ++E++S S
Sbjct: 86 SVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNS-S 144
Query: 129 SETAKAEAQIAVEVAEAL 146
E AEA + V V E+L
Sbjct: 145 DEGVAAEAAVRVSVLESL 162
>sp|Q1CX38|ATPE_MYXXD ATP synthase epsilon chain OS=Myxococcus xanthus (strain DK 1622)
GN=atpC PE=3 SV=1
Length = 136
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 43 VPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEA 102
VP G FG+ P H P L++++PG +T+ E+ G + FV+ G + V +D V ++A+ A
Sbjct: 25 VPGGRGLFGVRPGHTPFLSLMEPGALTLIES-GRRESYFVAGGFVEVGNDK-VLVLADAA 82
Query: 103 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKI 148
PV +D AR +++AQ + SSE A+ E + A EA +I
Sbjct: 83 EPVTGIDVEGARRRMAEAQERMKGMSSEDARFELEQATVRREAARI 128
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 149 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 207
FV+ G + V +D V ++A+ A PV +D AR +++AQ + SSE A+ E + A
Sbjct: 62 FVAGGFVEVGNDK-VLVLADAAEPVTGIDVEGARRRMAEAQERMKGMSSEDARFELEQA 119
>sp|Q0AKW2|ATPE_MARMM ATP synthase epsilon chain OS=Maricaulis maris (strain MCS10)
GN=atpC PE=3 SV=1
Length = 133
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
AD++ F L S + + NV QV VP G FG+LPNH P +++++PG ITV + +G
Sbjct: 2 ADKLHFDLVSPERRLFAG-NVDQVVVPGEEGDFGVLPNHAPFMSVIRPGAITVID-DGKE 59
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASA-ARDVLSKAQSELSSASSETAKAEA 136
+ F+ G V + + I+AEEA V +D ARD LS A+ ++++A E + +A
Sbjct: 60 TRTFIHGGFAEVT-AAGLTILAEEAIAVADIDTEKLARD-LSDAREDVTAAKDEEERDQA 117
Query: 137 QIAVEVAEALK 147
V EA++
Sbjct: 118 AALVAKYEAMQ 128
>sp|B6IPC5|ATPE_RHOCS ATP synthase epsilon chain OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=atpC PE=3 SV=1
Length = 146
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVY--ETE 74
AD+++F L S K+ +Q V V VP G FG+LP H P + ++PG+I VY
Sbjct: 1 MADKLEFELVSPEKLL-VSQPVAMVVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQT 59
Query: 75 GVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSL---DASAARDVLSKAQSELSSASSET 131
VS++IFV+ G V D+ ++AEEA +D+L D +A +S + ++ A+S+
Sbjct: 60 TVSRRIFVAGGFAEVT-DTRCTVLAEEASDLDALLKSDTAALEKQISDLREDIEDATSDV 118
Query: 132 AK 133
+
Sbjct: 119 ER 120
>sp|P05442|ATPE_RHORU ATP synthase epsilon chain OS=Rhodospirillum rubrum GN=atpC PE=3
SV=1
Length = 134
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
A+ +F L S ++ ++ + V+ V VP G FG +P H P L+ ++PGVI+ Y V
Sbjct: 2 AETTEFELVSPERLLFS-EPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQ 60
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSEL 124
++IFV+ G V +D ++A+EA + SL A R L A L
Sbjct: 61 RRIFVAGGFAEVTEDRCT-VLADEAFDLASLSEEAVRARLQAADDRL 106
>sp|Q2RV17|ATPE_RHORT ATP synthase epsilon chain OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=atpC PE=3 SV=1
Length = 134
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
A+ +F L S ++ ++ + V+ V VP G FG +P H P L+ ++PGVI+ Y V
Sbjct: 2 AETTEFELVSPERLLFS-EPVEMVVVPGTDGDFGAMPRHAPLLSTVRPGVISTYNGGKVQ 60
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSEL 124
++IFV+ G V +D ++A+EA + SL A R L A L
Sbjct: 61 RRIFVAGGFAEVTEDRCT-VLADEAFDLASLSEEAVRARLQAADDRL 106
>sp|Q2VZN3|ATPE_MAGSA ATP synthase epsilon chain OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=atpC PE=3 SV=1
Length = 133
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGV 76
A+++ F L S K+ +++ V V VP G FG L H P + ++PGVI +++ V
Sbjct: 1 MAEKIQFELVSPAKLLVSSK-VDMVVVPGAEGDFGALALHAPMITTVRPGVIDIHDGGKV 59
Query: 77 SQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEA 136
S +FV+ G VN++ + ++AEEA PV L A A A+ L A S+ KA A
Sbjct: 60 SSSVFVAGGFAEVNEE-RITVLAEEAIPVGELTAEMAEARKKAAKEALDDAKSDRDKAHA 118
>sp|Q9S5B5|ATPE_DESVM ATP synthase epsilon chain OS=Desulfovibrio vulgaris (strain
Miyazaki F / DSM 19637) GN=atpC PE=3 SV=1
Length = 134
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 36 QNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV 95
+ V V P + G FGILPNH+P L+ L G + Y+ G + IFVS G V+D+ V
Sbjct: 19 EKVDYVGAPGYEGEFGILPNHIPFLSALNIGSL-YYKAGGKTHWIFVSGGFAEVSDN-KV 76
Query: 96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSE 130
++AE A + +D AR +A+ L+ A +
Sbjct: 77 TVLAESAERAEDIDLERARKAKERAEQRLAQAKEK 111
>sp|Q07UZ6|ATPE_RHOP5 ATP synthase epsilon chain OS=Rhodopseudomonas palustris (strain
BisA53) GN=atpC PE=3 SV=1
Length = 135
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ + V QVDVP G FG+L NH P +A+++PG++TV T G QKI V
Sbjct: 6 FDLVSPEKLAFSGE-VDQVDVPGIEGDFGVLANHAPVVAVIRPGILTVI-TGGNQQKIVV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSS 126
G V+ + + ++A+ A V LDA+ +S +S L+
Sbjct: 64 LGGIAEVS-EKGLTVLADVATSVADLDAAMFAQTVSSMESALAG 106
>sp|B8EQQ2|ATPE_METSB ATP synthase epsilon chain OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=atpC PE=3 SV=1
Length = 133
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S ++ + V+ V VP G F +L +H P + LKPGVI + E++ + + FV
Sbjct: 6 FELVSPERLVFAGA-VESVVVPGTEGQFTVLKDHAPLMTTLKPGVIDIAESKALLHRFFV 64
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS-SETAKAEAQI--- 138
G V+ + + I+AE+A P++SLDA+ + A+ +++ AS ET + A+
Sbjct: 65 RGGFAEVS-PAGLTILAEQAIPLESLDAARIDADIKDAEEDIADASVDETRRLAAEKRDQ 123
Query: 139 AVEVAEALKI 148
+E+ ALKI
Sbjct: 124 LLELKAALKI 133
>sp|Q313W1|ATPE_DESDG ATP synthase epsilon chain OS=Desulfovibrio desulfuricans (strain
G20) GN=atpC PE=3 SV=1
Length = 134
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
+ + + +KV + Q V V P + G FG+LPNH+P L+ L G + Y+ G ++
Sbjct: 5 LQLEIVTPDKVVLSEQ-VDYVGAPGYEGEFGVLPNHIPFLSALSIGSL-YYKAGGKTRYA 62
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
FVS G V+D+ V I+AE A + +D AR +A+ L + + A+ A+
Sbjct: 63 FVSGGFAEVSDN-KVTILAESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAAL 121
Query: 141 EVA 143
+ A
Sbjct: 122 KRA 124
>sp|A7HT53|ATPE_PARL1 ATP synthase epsilon chain OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=atpC PE=3 SV=1
Length = 132
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGV 76
A++++F L S ++ ++ Q V V +P G GI+ H P ++ L+PG+I V E EG
Sbjct: 1 MAEKLNFDLVSPERLLFSGQ-VDMVVIPGSEGDMGIMAGHAPVMSTLRPGIIEV-ENEGA 58
Query: 77 -SQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAE 135
Q+IFV G V + + ++AE P+ LDA+A ++ A +++ A ++ +
Sbjct: 59 PRQRIFVRGGFAEVT-PAGLTVLAEFTVPLADLDATALDREIALADKDVADAKNDDKR-- 115
Query: 136 AQIAVEVAEALK 147
Q A+E + LK
Sbjct: 116 -QSALEKLDHLK 126
>sp|Q89X75|ATPE_BRAJA ATP synthase epsilon chain OS=Bradyrhizobium japonicum (strain USDA
110) GN=atpC PE=3 SV=1
Length = 135
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ + V QVD+P G FG+L H P +A ++PG++TV T G +KI V
Sbjct: 6 FDLVSPEKLAFSGE-VDQVDIPGVEGDFGVLAGHAPVVAAIRPGILTVT-TAGRHEKIIV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEV 142
G V+ + + ++A+ A +D LD R ++ +E+ E E +A+E
Sbjct: 64 LGGLAEVS-EKGLTVLADVATSLDELD----RAQFAETIAEMEEGLKEHEGGELDLAIER 118
Query: 143 AEALK 147
+ K
Sbjct: 119 LDHYK 123
>sp|Q1QQS9|ATPE1_NITHX ATP synthase epsilon chain 1 OS=Nitrobacter hamburgensis (strain
X14 / DSM 10229) GN=atpC1 PE=3 SV=1
Length = 135
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ +V QVDVP G FG+L H P +A ++PG++T+ T G QKI V
Sbjct: 6 FDLVSPEKLTFSG-DVDQVDVPGVEGDFGVLAGHAPVVAAIRPGILTIT-TGGTPQKIIV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSA-SSETAKA 134
G V+ + + ++A+ A + LD + D ++ +++L+ SE KA
Sbjct: 64 LGGLAEVS-EKGLTVLADVATSIQELDRAQFADTIASMEAKLAEKEGSELDKA 115
>sp|A4YKE1|ATPE_BRASO ATP synthase epsilon chain OS=Bradyrhizobium sp. (strain ORS278)
GN=atpC PE=3 SV=1
Length = 135
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ + V QVDVP G FG+L H P +A L+PG++TV T G QKI V
Sbjct: 6 FDLVSPEKIAFSGE-VDQVDVPGQEGDFGVLAGHAPFVATLRPGILTVT-TGGTQQKIIV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSE 130
G ++ + + I+A+ A + LD +A +S +++L+ +
Sbjct: 64 LGGLAEIS-EKGLTILADVATSLKELDQTAFATEISGMEAKLNEKQGD 110
>sp|Q21CY8|ATPE_RHOPB ATP synthase epsilon chain OS=Rhodopseudomonas palustris (strain
BisB18) GN=atpC PE=3 SV=1
Length = 135
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ Q V QVD+P G FG+L H P +A+++PG++T+ G QKI V
Sbjct: 6 FDLVSPEKLAFSGQ-VDQVDIPGVEGDFGVLAGHAPVVAVIRPGLLTI-TAGGNQQKIVV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSS 126
G V+ D + ++A+ A V LD + +S +S L+
Sbjct: 64 LGGLAEVS-DKGLTVLADVATSVAELDTAQFAQTISSMESSLAG 106
>sp|Q95312|ATPD_PIG ATP synthase subunit delta, mitochondrial (Fragment) OS=Sus
scrofa GN=ATP5D PE=3 SV=1
Length = 80
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAIL 63
M FT AS +VF+ NV+QVDVP+ +GAFGIL +HVPTL +L
Sbjct: 38 MSFTFASPTQVFFNGANVRQVDVPTQTGAFGILASHVPTLQVL 80
>sp|Q8WI12|ATPE_PSINU ATP synthase epsilon chain, chloroplastic OS=Psilotum nudum GN=atpE
PE=3 SV=1
Length = 133
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
++ + + N++ + N V+++ + + +G GILPNH P L L GV+ + E S +
Sbjct: 2 LNLRVIAPNRIVW-NSEVREIILSTNNGQMGILPNHAPLLTALDIGVMKIRIDERWSN-M 59
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
+ G T+ D++ + I+ EA +D A++ KAQ+ L+ A + EA +A
Sbjct: 60 ALMGGFATI-DNNQITILVNEAEKSSEIDPEEAQETFQKAQANLTRAEGKRKTIEAHLAF 118
Query: 141 EVAEA 145
+ A+A
Sbjct: 119 KRAKA 123
>sp|Q3SVJ0|ATPE_NITWN ATP synthase epsilon chain OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=atpC PE=3 SV=1
Length = 135
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 23 FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
F L S K+ ++ + V QVD+P G FG+L H P +A ++PG++TV G QKI V
Sbjct: 6 FDLVSPEKLAFSGE-VDQVDIPGVEGDFGVLAGHAPVVAAIRPGMLTVT-AGGTQQKIIV 63
Query: 83 SSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSA-SSETAKA 134
G V+ + + ++A+ A ++ LD + D ++ ++ L+ SE KA
Sbjct: 64 LGGLAEVS-EKGLTVLADVATSIEELDRAQFADTIAGMEARLTDKEGSELDKA 115
>sp|A1VFJ6|ATPE_DESVV ATP synthase epsilon chain OS=Desulfovibrio vulgaris subsp.
vulgaris (strain DP4) GN=atpC PE=3 SV=1
Length = 134
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 36 QNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV 95
+ V V P F G FG+LP+H+P L+ L G + Y+ G + +FVS G V+D+ V
Sbjct: 19 EQVDYVGAPGFEGEFGVLPSHIPFLSALAIGSL-YYKANGKTHHVFVSGGFAEVSDN-KV 76
Query: 96 QIIAEEAHPVDSLDASAARDVLSKAQSELS 125
++AE A + +D AR +A+ L+
Sbjct: 77 TVLAESAERAEDIDIDRARKAKDRAEQRLA 106
>sp|Q72E05|ATPE_DESVH ATP synthase epsilon chain OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpC PE=3
SV=1
Length = 134
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 36 QNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV 95
+ V V P F G FG+LP+H+P L+ L G + Y+ G + +FVS G V+D+ V
Sbjct: 19 EQVDYVGAPGFEGEFGVLPSHIPFLSALAIGSL-YYKANGKTHHVFVSGGFAEVSDN-KV 76
Query: 96 QIIAEEAHPVDSLDASAARDVLSKAQSELS 125
++AE A + +D AR +A+ L+
Sbjct: 77 TVLAESAERAEDIDIDRARKAKDRAEQRLA 106
>sp|Q85FL4|ATPE_ADICA ATP synthase epsilon chain, chloroplastic OS=Adiantum
capillus-veneris GN=atpE PE=2 SV=2
Length = 132
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
+ + + N++ + N V+++ + + SG GILPNH P LA L GV+ + + S
Sbjct: 3 LSLCVMAPNRIVW-NSEVREIILSTNSGQIGILPNHAPLLAALDMGVLKIRSDKQWSAMA 61
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAV 140
+ G + D++ V I+ EA +D AR AQ+EL+ A EA +
Sbjct: 62 LM--GGFAMIDNNRVIILVNEAERASEIDPEEARKSFQTAQAELAEAEGRRKLIEANLTF 119
Query: 141 EVAEA 145
+ A+A
Sbjct: 120 KRAKA 124
>sp|P37812|ATPE_BACSU ATP synthase epsilon chain OS=Bacillus subtilis (strain 168)
GN=atpC PE=1 SV=1
Length = 132
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 37 NVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96
+++ V V + SG GILP H+PT+A LK G + + + +G ++ + VS G + V D V
Sbjct: 19 DIEMVSVRAESGDLGILPGHIPTVAPLKIGAVRL-KKDGQTEMVAVSGGFVEVRPD-HVT 76
Query: 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVA 143
I+A+ A + +D A +AQ L+S S +T A++A++ A
Sbjct: 77 ILAQAAETAEGIDKERAEAARQRAQERLNSQSDDTDIRRAELALQRA 123
>sp|Q31UN1|ATPE_SHIBS ATP synthase epsilon chain OS=Shigella boydii serotype 4 (strain
Sb227) GN=atpC PE=3 SV=1
Length = 139
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-SGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|B2TUP4|ATPE_SHIB3 ATP synthase epsilon chain OS=Shigella boydii serotype 18 (strain
CDC 3083-94 / BS512) GN=atpC PE=3 SV=1
Length = 139
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-SGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|A1B8P1|ATPE_PARDP ATP synthase epsilon chain OS=Paracoccus denitrificans (strain Pd
1222) GN=atpC PE=3 SV=1
Length = 148
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGV 76
AD M F L S + + V++V +P G +P H P + L+PG++TV +G
Sbjct: 1 MADTMQFDLVSPERNLVSVP-VREVRLPGADGDLTAMPGHAPAIVNLRPGLVTVVAGDGS 59
Query: 77 SQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEA 136
+ V+ G +N++ SV ++AE HP + +++++A+ + +A + E
Sbjct: 60 ETEFAVTGGFAEINNE-SVTLLAERGHPRAEMTQEVFNEMMAQARRRVEAAKERESAGEE 118
Query: 137 QIAVEV 142
+A V
Sbjct: 119 LVAAAV 124
>sp|Q3YVN5|ATPE_SHISS ATP synthase epsilon chain OS=Shigella sonnei (strain Ss046)
GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|P0A6E8|ATPE_SHIFL ATP synthase epsilon chain OS=Shigella flexneri GN=atpC PE=3 SV=2
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|Q0SYU5|ATPE_SHIF8 ATP synthase epsilon chain OS=Shigella flexneri serotype 5b (strain
8401) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|Q329S0|ATPE_SHIDS ATP synthase epsilon chain OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|B7LK76|ATPE_ESCF3 ATP synthase epsilon chain OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|Q1R4K3|ATPE_ECOUT ATP synthase epsilon chain OS=Escherichia coli (strain UTI89 /
UPEC) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|B1LL58|ATPE_ECOSM ATP synthase epsilon chain OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|B6I3W8|ATPE_ECOSE ATP synthase epsilon chain OS=Escherichia coli (strain SE11)
GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|B7NF47|ATPE_ECOLU ATP synthase epsilon chain OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=atpC PE=3 SV=1
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
>sp|P0A6E6|ATPE_ECOLI ATP synthase epsilon chain OS=Escherichia coli (strain K12) GN=atpC
PE=1 SV=2
Length = 139
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 38 VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97
V+++ V G GI P H P L +KPG+I + + G + I++S G + V +V +
Sbjct: 21 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQ-PGNVTV 79
Query: 98 IAEEAHPVDSLDASAARDVLSKAQSELSS---------ASSETAKAEAQIAV 140
+A+ A LD + A + KA+ +SS AS+E AKA AQ+ V
Sbjct: 80 LADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRV 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.120 0.301
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,218,834
Number of Sequences: 539616
Number of extensions: 2077172
Number of successful extensions: 9711
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 8722
Number of HSP's gapped (non-prelim): 1177
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)