Query psy9917
Match_columns 219
No_of_seqs 255 out of 1553
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:56:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00539 atpC F0F1 ATP synthas 100.0 2.6E-34 5.7E-39 227.3 16.1 128 19-148 2-129 (133)
2 PRK13450 atpC F0F1 ATP synthas 100.0 5.4E-34 1.2E-38 225.4 16.2 129 18-149 1-129 (132)
3 PRK13446 atpC F0F1 ATP synthas 100.0 5.9E-34 1.3E-38 226.3 15.7 131 17-150 1-131 (136)
4 PRK00571 atpC F0F1 ATP synthas 100.0 1.2E-33 2.7E-38 224.1 15.8 131 20-152 3-133 (135)
5 CHL00063 atpE ATP synthase CF1 100.0 4.5E-33 9.8E-38 220.6 16.2 127 20-149 2-128 (134)
6 TIGR01216 ATP_synt_epsi ATP sy 100.0 4.2E-33 9E-38 219.8 15.9 128 20-149 1-128 (130)
7 COG0355 AtpC F0F1-type ATP syn 100.0 5.4E-33 1.2E-37 220.1 16.2 131 17-150 1-132 (135)
8 PRK13452 atpC F0F1 ATP synthas 100.0 1.3E-32 2.7E-37 220.6 16.4 129 19-150 4-133 (145)
9 PRK14735 atpC F0F1 ATP synthas 100.0 1.4E-32 2.9E-37 219.2 16.0 128 20-150 2-129 (139)
10 PRK14736 atpC F0F1 ATP synthas 100.0 1.8E-32 3.9E-37 216.8 15.9 127 17-146 1-127 (133)
11 PRK13444 atpC F0F1 ATP synthas 100.0 2.6E-32 5.7E-37 214.4 15.6 123 17-149 2-124 (127)
12 KOG1758|consensus 100.0 7.1E-31 1.5E-35 207.3 15.6 132 19-150 27-158 (159)
13 PRK01474 atpC F0F1 ATP synthas 100.0 3.4E-31 7.4E-36 203.9 13.0 108 17-126 1-110 (112)
14 PRK13448 atpC F0F1 ATP synthas 100.0 1.2E-30 2.5E-35 207.0 16.4 108 17-128 1-108 (135)
15 PRK13443 atpC F0F1 ATP synthas 100.0 7.3E-31 1.6E-35 208.1 14.9 111 17-130 1-111 (136)
16 PRK13451 atpC F0F1 ATP synthas 100.0 6.2E-30 1.3E-34 193.5 12.1 99 21-122 1-99 (101)
17 PRK06228 F0F1 ATP synthase sub 99.9 8.2E-27 1.8E-31 184.0 14.2 101 20-124 2-103 (131)
18 PRK13442 atpC F0F1 ATP synthas 99.9 6.4E-27 1.4E-31 173.2 10.3 85 19-105 4-88 (89)
19 PRK13447 F0F1 ATP synthase sub 99.9 3E-26 6.5E-31 181.8 14.8 128 21-152 1-128 (136)
20 TIGR03166 alt_F1F0_F1_eps alte 99.9 2.9E-26 6.3E-31 178.9 12.4 97 22-122 1-98 (122)
21 PRK13449 atpC F0F1 ATP synthas 99.9 4.4E-26 9.6E-31 168.4 10.6 84 19-104 2-86 (88)
22 PF02823 ATP-synt_DE_N: ATP sy 99.9 1.9E-25 4.2E-30 161.9 10.9 80 21-102 1-80 (80)
23 KOG1758|consensus 99.8 2.3E-21 4.9E-26 153.5 7.0 131 64-219 25-159 (159)
24 PRK14736 atpC F0F1 ATP synthas 99.8 2.6E-19 5.7E-24 141.7 5.3 105 91-219 28-132 (133)
25 PRK00539 atpC F0F1 ATP synthas 99.7 7.7E-19 1.7E-23 139.0 4.6 99 91-213 28-126 (133)
26 COG0355 AtpC F0F1-type ATP syn 99.7 6.8E-19 1.5E-23 139.5 3.9 97 91-210 28-124 (135)
27 CHL00063 atpE ATP synthase CF1 99.7 1.7E-18 3.7E-23 137.2 5.2 100 91-215 27-126 (134)
28 PRK13452 atpC F0F1 ATP synthas 99.7 6.2E-18 1.3E-22 135.7 5.8 98 91-213 30-128 (145)
29 PRK14735 atpC F0F1 ATP synthas 99.7 6.6E-18 1.4E-22 134.7 5.3 98 91-213 27-124 (139)
30 PRK13448 atpC F0F1 ATP synthas 99.7 1E-17 2.2E-22 133.0 5.6 102 91-218 28-129 (135)
31 PRK00571 atpC F0F1 ATP synthas 99.7 1.5E-17 3.2E-22 132.0 4.8 99 91-213 28-126 (135)
32 PRK13446 atpC F0F1 ATP synthas 99.7 1.9E-17 4.2E-22 131.5 5.3 98 91-213 29-126 (136)
33 TIGR01216 ATP_synt_epsi ATP sy 99.7 2.7E-17 5.9E-22 129.6 5.5 104 91-218 26-129 (130)
34 PRK13443 atpC F0F1 ATP synthas 99.7 2.3E-17 5E-22 131.0 4.4 102 91-217 29-133 (136)
35 PRK13450 atpC F0F1 ATP synthas 99.7 2.5E-17 5.4E-22 130.3 4.6 98 91-213 28-125 (132)
36 PRK13444 atpC F0F1 ATP synthas 99.6 7.9E-16 1.7E-20 120.9 4.3 79 91-194 30-108 (127)
37 PRK01474 atpC F0F1 ATP synthas 99.6 8.7E-16 1.9E-20 118.2 2.0 82 91-194 29-110 (112)
38 PRK13451 atpC F0F1 ATP synthas 99.6 8.2E-16 1.8E-20 116.3 1.0 76 91-191 25-100 (101)
39 PRK13447 F0F1 ATP synthase sub 99.2 4.2E-12 9.1E-17 100.9 3.7 71 91-185 26-97 (136)
40 TIGR03166 alt_F1F0_F1_eps alte 99.2 1.7E-12 3.6E-17 101.5 1.2 74 91-190 25-98 (122)
41 PRK06228 F0F1 ATP synthase sub 99.2 1.9E-12 4.1E-17 102.3 0.9 74 91-190 28-101 (131)
42 PRK13449 atpC F0F1 ATP synthas 98.8 3.3E-10 7.1E-15 83.7 -2.4 60 91-173 28-87 (88)
43 PRK13442 atpC F0F1 ATP synthas 98.8 5.5E-10 1.2E-14 82.6 -1.5 59 91-173 30-88 (89)
44 PF02823 ATP-synt_DE_N: ATP sy 98.5 6.4E-09 1.4E-13 75.1 -3.7 56 91-170 25-80 (80)
45 PF00401 ATP-synt_DE: ATP synt 97.5 0.00024 5.2E-09 46.5 4.9 46 106-151 1-46 (48)
46 PF00401 ATP-synt_DE: ATP synt 97.3 0.00035 7.6E-09 45.7 4.1 39 174-212 1-39 (48)
47 PRK10579 hypothetical protein; 85.3 6.6 0.00014 29.3 7.4 68 31-100 6-84 (94)
48 PF06865 DUF1255: Protein of u 70.3 27 0.00058 26.1 6.8 68 31-100 6-84 (94)
49 TIGR02302 aProt_lowcomp conser 30.3 3.4E+02 0.0074 28.1 9.1 97 102-214 490-599 (851)
50 COG3123 Uncharacterized protei 26.1 2.7E+02 0.0059 20.5 7.1 69 29-99 4-83 (94)
51 PF11591 2Fe-2S_Ferredox: Ferr 26.1 35 0.00076 20.1 0.8 22 2-23 10-32 (34)
52 KOG0481|consensus 25.7 1.4E+02 0.0029 29.5 5.1 65 76-168 413-477 (729)
53 TIGR02302 aProt_lowcomp conser 25.0 1.1E+02 0.0023 31.6 4.6 48 162-209 482-533 (851)
54 PF13779 DUF4175: Domain of un 23.9 1.2E+02 0.0025 31.3 4.5 46 162-207 451-500 (820)
55 PF13779 DUF4175: Domain of un 22.8 4.8E+02 0.01 26.9 8.7 103 100-214 457-569 (820)
56 COG1566 EmrA Multidrug resista 22.4 6.1E+02 0.013 23.3 9.6 26 104-129 80-105 (352)
57 COG1795 Formaldehyde-activatin 22.1 36 0.00078 27.7 0.5 15 54-68 43-57 (170)
No 1
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=2.6e-34 Score=227.34 Aligned_cols=128 Identities=12% Similarity=0.176 Sum_probs=121.8
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
.+|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.++.++++|||++|.+| .|+||
T Consensus 2 ~~~~l~IvTP~~~~~~~-~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n-~v~Il 79 (133)
T PRK00539 2 QMLRFLVLSPSGIKLDE-KIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKT-EAKIF 79 (133)
T ss_pred CccEEEEEcCCCeEEec-eEEEEEEecCccCceecCCCcceEeEecceEEEEEECCCcEEEEEEeeeEEEEECC-EEEEE
Confidence 36999999999999999 99999999999999999999999999999999998767788889999999999988 89999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKI 148 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~ 148 (219)
++.+.+.++||..+++..+++|+++|++..++.++.+++.+|+++..++.
T Consensus 80 ad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~ 129 (133)
T PRK00539 80 TENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLS 129 (133)
T ss_pred ECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888999999999999998864
No 2
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=5.4e-34 Score=225.42 Aligned_cols=129 Identities=29% Similarity=0.484 Sum_probs=122.7
Q ss_pred ccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEE
Q psy9917 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97 (219)
Q Consensus 18 a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~I 97 (219)
|++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+..+|.++.|+++|||++|.+| .+.|
T Consensus 1 ~~~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~-~v~I 78 (132)
T PRK13450 1 ANNIKLTILTPEKNFYIG-EVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENN-EVYI 78 (132)
T ss_pred CCeEEEEEEcCCceEEec-eEEEEEEECCccCceecCCCcccEeEEccEEEEEEECCCcEEEEEEcCeEEEEECC-EEEE
Confidence 578999999999999998 99999999999999999999999999999999999878888999999999999987 7999
Q ss_pred eeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917 98 IAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF 149 (219)
Q Consensus 98 la~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 149 (219)
+++++.+.++||..+++..+++|+++| +..+..++.+++.+++++..++..
T Consensus 79 l~~~a~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~rl~~ 129 (132)
T PRK13450 79 LCDASEWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIARIKL 129 (132)
T ss_pred EehhhcccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999 666888999999999999998765
No 3
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=5.9e-34 Score=226.25 Aligned_cols=131 Identities=28% Similarity=0.453 Sum_probs=124.8
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|+++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.++.|+++|||++|+++ .|.
T Consensus 1 m~~~l~l~IvTP~~~~~~~-~v~~V~lpt~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~ 77 (136)
T PRK13446 1 MAKKLKLEIVTPEKKVLSE-EVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKK-GGKTHYVAVNGGFAEVSNN-KVT 77 (136)
T ss_pred CCCccEEEEEcCCceEEee-eEEEEEEEcCccCeEEcCCCcceEEEeeccEEEEEe-CCcEEEEEEcCEEEEEECC-EEE
Confidence 7889999999999999998 999999999999999999999999999999999985 7788899999999999987 799
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
|+++.+.+.++||+.+++..+++|+++|++..++.++.+++.+++++..++...
T Consensus 78 Il~~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~rl~~~ 131 (136)
T PRK13446 78 VLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALIRLQVA 131 (136)
T ss_pred EEeeeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888899999999999999998764
No 4
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=100.00 E-value=1.2e-33 Score=224.06 Aligned_cols=131 Identities=31% Similarity=0.496 Sum_probs=124.7
Q ss_pred ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.+++|+++|||++|.+| .|.|++
T Consensus 3 ~l~l~ivtP~~~~~~~-~v~~v~~~~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n-~v~Ila 80 (135)
T PRK00571 3 TLTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPD-KVTVLA 80 (135)
T ss_pred eEEEEEEcCCCcEEee-eEEEEEEEcCccCeeecCCCcceEEEeeceEEEEEECCCcEEEEEEccEEEEEECC-EEEEEE
Confidence 7999999999999998 99999999999999999999999999999999999867788899999999999987 899999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhcc
Q psy9917 100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSS 152 (219)
Q Consensus 100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vsg 152 (219)
+++.+.++||+.+++..+++|+++|++..++.++.+++.+++++.+++...++
T Consensus 81 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~~~ 133 (135)
T PRK00571 81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEK 133 (135)
T ss_pred eeEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988899999999999999999887543
No 5
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=100.00 E-value=4.5e-33 Score=220.65 Aligned_cols=127 Identities=23% Similarity=0.414 Sum_probs=121.4
Q ss_pred ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.+++|+++|||++|.+| .|.|++
T Consensus 2 ~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gIL~~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~Il~ 78 (134)
T CHL00063 2 TLNLRVLTPNRIVWDS-EVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRL-NDQWLTMALMGGFARIGNN-EITILV 78 (134)
T ss_pred eEEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEeEecceEEEEEE-CCeEEEEEEcceEEEEECC-EEEEEE
Confidence 5899999999999998 999999999999999999999999999999999985 6788899999999999987 899999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917 100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF 149 (219)
Q Consensus 100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 149 (219)
+.+.+.++||..+++..+++|+++|++..++.++.+++.+++++.+++.+
T Consensus 79 ~~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl~~ 128 (134)
T CHL00063 79 NDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARVEA 128 (134)
T ss_pred CeeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999998875
No 6
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=100.00 E-value=4.2e-33 Score=219.76 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=123.0
Q ss_pred ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|.+++|+++|||++|.+| .|.|++
T Consensus 1 ~~~l~IvtP~~~~~~~-~v~~v~~~t~~G~~giL~~H~p~i~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~-~v~Il~ 78 (130)
T TIGR01216 1 TLKLEIVTPEGEIYSG-EVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPD-KVTILA 78 (130)
T ss_pred CEEEEEEcCCceEEee-eEEEEEEECCcCCeeecCCChhhEeEecceEEEEEECCCCEEEEEEcCcEEEEECC-EEEEEE
Confidence 5899999999999998 99999999999999999999999999999999999778888999999999999987 899999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917 100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF 149 (219)
Q Consensus 100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 149 (219)
+.+.+.++||+.+++..+++|+++|++..++.++.+++.+++++.+++.+
T Consensus 79 ~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~ 128 (130)
T TIGR01216 79 DGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEA 128 (130)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988999999999999999999865
No 7
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=100.00 E-value=5.4e-33 Score=220.06 Aligned_cols=131 Identities=33% Similarity=0.534 Sum_probs=123.3
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSV 95 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v 95 (219)
|+. |+|+|+||++.+|++ +|++|++||++|+|||||||+|+|+.|.||+++|+..++ ++..|+++|||++|.++ +|
T Consensus 1 M~~-l~l~IVsP~~~i~~g-~v~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~~~~~~~~i~VsgGfleV~~~-~v 77 (135)
T COG0355 1 MAE-LKLEIVSPEGIIYSG-EVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEEKIAVSGGFLEVQPN-EV 77 (135)
T ss_pred CCc-eEEEEEcCCceEEee-EEEEEEEecCCeeeecCCCCccceeeecCcEEEEEEcCCCceEEEEEeccEEEEeCC-EE
Confidence 566 999999999999999 999999999999999999999999999999999999874 56799999999999987 89
Q ss_pred EEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 96 ~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
+|+++.+.+.++||+.+++..+++|++.+++..++.++.+++.++.++.+++...
T Consensus 78 tIlad~A~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~~~ 132 (135)
T COG0355 78 TILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLRVA 132 (135)
T ss_pred EEEEceeEecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999988889999999999998887653
No 8
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.3e-32 Score=220.65 Aligned_cols=129 Identities=19% Similarity=0.309 Sum_probs=120.5
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|+|..|+++|||++|.+| .++||
T Consensus 4 ~~l~l~IvtP~~~~~~g-~v~~V~lp~~~G~~GILp~H~plit~L~~G~l~i~~-~~~~~~~~v~gGf~eV~~n-~v~Il 80 (145)
T PRK13452 4 KYLKVDVVSPLGSVFKG-EADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRK-DQHTDVLYVSGGIVEVTPT-RVTIM 80 (145)
T ss_pred cEEEEEEEcCCceEEec-eeEEEEEEcCccCeEecCCCcceEeeecceEEEEEE-CCcEEEEEEcceEEEEECC-EEEEE
Confidence 57999999999999998 999999999999999999999999999999999985 6778889999999999987 89999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSS-ASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~-~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
++.+.+.++||+.+++..+++|+++|++ ..+..++.+++.+++++..++.++
T Consensus 81 ad~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~ 133 (145)
T PRK13452 81 VDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKAL 133 (145)
T ss_pred eCeeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 446677889999999999988753
No 9
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.4e-32 Score=219.16 Aligned_cols=128 Identities=26% Similarity=0.433 Sum_probs=121.8
Q ss_pred ccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEee
Q psy9917 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 20 ~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.|..|+++|||++|.+| .|+|++
T Consensus 2 ~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~P~it~L~~G~v~i~~-~g~~~~~~v~gGf~ev~~~-~v~Ila 78 (139)
T PRK14735 2 PIHLEIVTAERVVLSD-DVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVK-NGVRTPFAISGGFMEVLPH-RVTILA 78 (139)
T ss_pred eEEEEEECCCccEEee-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEE-CCeEEEEEEcccEEEEeCC-EEEEEe
Confidence 6899999999999998 999999999999999999999999999999999985 7888899999999999987 799999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 100 EEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
+++.+.++||..+++..+++|+++|++..+..++.+++.+++++.+++.+.
T Consensus 79 ~~a~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~arl~~~ 129 (139)
T PRK14735 79 DTAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLRVA 129 (139)
T ss_pred eeEEEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888889999999999999998764
No 10
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=1.8e-32 Score=216.81 Aligned_cols=127 Identities=28% Similarity=0.479 Sum_probs=118.8
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|+ +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++|+++|||++|.+| .|+
T Consensus 1 Ma-~~~l~IvTP~~~~~~~-~v~~V~vp~~~G~~gILp~H~P~it~L~~G~l~i~~~~~~~~~~~v~gGf~eV~~n-~v~ 77 (133)
T PRK14736 1 MA-TFHFDLVGPERTLYSG-EVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPT-SVT 77 (133)
T ss_pred CC-ceEEEEEcCCccEEee-eeEEEEEecCccCeeEcCCChhhEeEecceEEEEEECCCcEEEEEEeceEEEEECC-EEE
Confidence 55 7999999999999998 99999999999999999999999999999999998778888999999999999988 899
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~ 146 (219)
|+++.+.+.++||+++++..+++|++.+..+.++..+.+++..+...+..
T Consensus 78 Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (133)
T PRK14736 78 VLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEA 127 (133)
T ss_pred EEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999989998898888877665543
No 11
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=100.00 E-value=2.6e-32 Score=214.44 Aligned_cols=123 Identities=24% Similarity=0.451 Sum_probs=112.6
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|.+..|+++|||++|.+| .+.
T Consensus 2 Ma~~~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gG~~~v~~~-~v~ 78 (127)
T PRK13444 2 MAKKLTVSVISPEKILYKG-EVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRK-GEKLKRISVEGGFCEVKDN-QIS 78 (127)
T ss_pred CCCceEEEEEcCCceEEec-eEEEEEEECCccCeEecCCCcCeEeEeccEEEEEEE-CCeEEEEEEeceEEEEECC-EEE
Confidence 7889999999999999998 999999999999999999999999999999999986 7788899999999999987 899
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF 149 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 149 (219)
|+++.+.+.++||..+++..+++|+++|++ .++ +..++++..++..
T Consensus 79 Il~~~a~~~~diD~~~a~~~~~~Ae~~l~~-~~~------~~~l~ra~~rl~~ 124 (127)
T PRK13444 79 ILTDHGALKEDIDHEHEKKLLAEAEKLPPS-DSK------NLLLQKTKTRILV 124 (127)
T ss_pred EEEeEEEehhhCCHHHHHHHHHHHHHHHhC-Cch------HHHHHHHHHHHHh
Confidence 999999999999999999999999999987 322 5557777777654
No 12
>KOG1758|consensus
Probab=99.97 E-value=7.1e-31 Score=207.31 Aligned_cols=132 Identities=52% Similarity=0.732 Sum_probs=126.4
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|.+.+|+..+|++.+|++|.+||.+|+||||+||.|+++.|+||++.|+.++|...+||++|||+.|+.|+++.|+
T Consensus 27 ~~L~l~fa~P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~~~~~k~FvSsGfa~v~~ds~~~il 106 (159)
T KOG1758|consen 27 EKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKSKYFVSSGFATVNADSSLQIL 106 (159)
T ss_pred ceeEEEEecCceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCCCcEEEEEEecceEEEcCCCeEEEE
Confidence 68999999999999999899999999999999999999999999999999999977766699999999999988899999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
+..+..+++||++.++..++.++.++.++.|+.+++++++++++++++..+.
T Consensus 107 a~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al 158 (159)
T KOG1758|consen 107 AEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKAL 158 (159)
T ss_pred ehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988764
No 13
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.97 E-value=3.4e-31 Score=203.93 Aligned_cols=108 Identities=26% Similarity=0.450 Sum_probs=101.7
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcC--CeEEEEEEecCeEEEecCce
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETE--GVSQKIFVSSGTITVNDDSS 94 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~--g~~~~~~vsgG~~~V~~~g~ 94 (219)
|+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+ |++.+|+++|||++|.+| .
T Consensus 1 m~~~~~l~IvTP~~~~~~~-~v~~V~lp~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~~v~gGf~~v~~n-~ 78 (112)
T PRK01474 1 MNETILVKIITPLSIAFEK-QAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENTYLISGGVTEVTGN-Y 78 (112)
T ss_pred CCceEEEEEEcCCceEEee-eEEEEEEEcCccCceecCCCcceEEEecceEEEEEECCCCCcEEEEEEcceEEEEECC-E
Confidence 7889999999999999998 99999999999999999999999999999999998644 577889999999999987 8
Q ss_pred EEEeeCcccCCCCCCHHHHHHHHHHHHHHhhc
Q psy9917 95 VQIIAEEAHPVDSLDASAARDVLSKAQSELSS 126 (219)
Q Consensus 95 v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~ 126 (219)
++|+++.+.+.++||+.+++..+++|+++|+.
T Consensus 79 v~Ila~~a~~~~~ID~~~a~~~~~~A~~~l~~ 110 (112)
T PRK01474 79 INIATETAINVTNLSEAEIATKLLDLQKTLSD 110 (112)
T ss_pred EEEEeCeeEEhhhCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998864
No 14
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=1.2e-30 Score=207.04 Aligned_cols=108 Identities=31% Similarity=0.602 Sum_probs=101.8
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|+ +|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. +|+++.|+++|||++|.+| .++
T Consensus 1 Ma-~~~l~IvtPe~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~pG~v~i~~-~~~~~~~~v~gGf~eV~~~-~v~ 76 (135)
T PRK13448 1 MA-TFHFDLVSPEKLAFSG-EVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTA-GGNQQKIVVLGGLAEVSEK-GLT 76 (135)
T ss_pred CC-eeEEEEEcCCccEEee-eEEEEEEEcCccCeEEcCCCcceEeEeccEEEEEEE-CCcEEEEEEeccEEEEECC-EEE
Confidence 55 7999999999999998 999999999999999999999999999999999985 6677789999999999987 799
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCC
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSAS 128 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~ 128 (219)
|+++++.+.++||+.+++..+++|+++|++..
T Consensus 77 Ila~~a~~~~dID~~~a~~~~~~Ae~~l~~~~ 108 (135)
T PRK13448 77 VLADVATSVADLDLAQFAATIAEMEAQLAGKV 108 (135)
T ss_pred EEEeeeEEcccCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999998753
No 15
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=7.3e-31 Score=208.12 Aligned_cols=111 Identities=26% Similarity=0.472 Sum_probs=103.8
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|+++|+|+|+||++++|++ +|++|++||.+|+|||||||+|+|+.|+||+++|+..++. ..|+++|||++|++| .|+
T Consensus 1 M~~~l~l~IVTP~~~~~~g-ev~~V~lpt~~Ge~GILp~H~Plit~L~pG~v~i~~~~~~-~~~avsgGf~eV~~n-~V~ 77 (136)
T PRK13443 1 MAGTLQFDLVSPERRLASF-QATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGT-QEYAVTGGFAEINAT-SIS 77 (136)
T ss_pred CCCeeEEEEEcCCceEEec-eEEEEEEecCccCeeEcCCCcceEEEecceEEEEEECCCe-EEEEEcceEEEEECC-EEE
Confidence 6788999999999999998 9999999999999999999999999999999999875554 459999999999988 799
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCH
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSE 130 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~ 130 (219)
|+++++.+.++||..+++..+++|+++|++..++
T Consensus 78 Ilad~a~~~edID~~~a~~a~~~Ae~~l~~~~~~ 111 (136)
T PRK13443 78 VLAEKAIPVEELTGAVLDEFIAEARELASVALPE 111 (136)
T ss_pred EEeCeeEEhhhCCHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999986544
No 16
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.97 E-value=6.2e-30 Score=193.55 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=94.0
Q ss_pred cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE 100 (219)
Q Consensus 21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~ 100 (219)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+. +++++.|+++|||++|++| .++|+++
T Consensus 1 m~l~IvtP~~~~~~~-~v~~V~~pt~~G~~GILp~H~p~it~L~~G~l~i~~-~~~~~~~~v~gGf~~v~~~-~v~Il~~ 77 (101)
T PRK13451 1 MKVKIVTPYGIVYDR-ESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKS-GDDEYEYKVADGFLHCDGK-NVIIITE 77 (101)
T ss_pred CEEEEEcCCceEEec-eeEEEEEEcCccCeEEcCCCcceEEEecceEEEEEE-CCcEEEEEEeccEEEEECC-EEEEEEe
Confidence 789999999999998 999999999999999999999999999999999986 5677889999999999987 8999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHH
Q psy9917 101 EAHPVDSLDASAARDVLSKAQS 122 (219)
Q Consensus 101 ~a~~~~~Id~~~~~~~~e~a~~ 122 (219)
++.+.++||++++++.+++|++
T Consensus 78 ~a~~~e~ID~~~a~~a~~~Ae~ 99 (101)
T PRK13451 78 EAGREEEISPHRYLGARERVER 99 (101)
T ss_pred EeEehhhCCHHHHHHHHHHhhc
Confidence 9999999999999999998765
No 17
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=99.95 E-value=8.2e-27 Score=184.00 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=90.8
Q ss_pred ccEEEEEecCceeeecCc-eeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 20 QMDFTLASGNKVFYTNQN-VKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 20 ~l~l~IvTP~~~~~~~~~-v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
.|+|+|+||++++|++ + |++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++|+++|||++|.+| .++|+
T Consensus 2 ~~~l~IvTP~~~~~~g-~~v~~V~lpt~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~ev~~n-~V~Il 79 (131)
T PRK06228 2 SMNLKILLPFEVFAEK-KGVTRIVAETREGSFGLLPHRLDCVAALVPGILVYETEAEGEVYVAVDEGILVKTGP-DVLVS 79 (131)
T ss_pred ceEEEEEcCCeeEECC-CcEEEEEEEcCccCeEECCCCcceEeeecceEEEEEECCCcEEEEEEcceEEEEECC-EEEEE
Confidence 5899999999999999 7 9999999999999999999999999999999998767788999999999999987 89999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSEL 124 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l 124 (219)
++++.+.++|| ++...++++.+.+
T Consensus 80 ad~ae~~edid--~~~~~l~~~~~~~ 103 (131)
T PRK06228 80 VRNAIGGTDLG--ELREAVEQEFLTL 103 (131)
T ss_pred EceeEchhhHH--HHHHHHHHHHHhh
Confidence 99999999875 4666666654433
No 18
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.94 E-value=6.4e-27 Score=173.24 Aligned_cols=85 Identities=25% Similarity=0.474 Sum_probs=80.8
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+..++++++|+++|||++|.+| ++.|+
T Consensus 4 ~~~~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n-~v~Il 81 (89)
T PRK13442 4 ATLHVNIVAADRPVWSG-EATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSN-KLTVL 81 (89)
T ss_pred CEEEEEEEcCCccEEec-eeEEEEEECCcCCcEecCCCcCeEEEEcceEEEEEECCCcEEEEEEccEEEEEECC-EEEEE
Confidence 57999999999999998 99999999999999999999999999999999999777888999999999999987 89999
Q ss_pred eCcccCC
Q psy9917 99 AEEAHPV 105 (219)
Q Consensus 99 a~~a~~~ 105 (219)
++++++.
T Consensus 82 ~~~ae~~ 88 (89)
T PRK13442 82 AERAELV 88 (89)
T ss_pred EeEEEEC
Confidence 9999874
No 19
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.94 E-value=3e-26 Score=181.79 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=99.2
Q ss_pred cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE 100 (219)
Q Consensus 21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~ 100 (219)
|+|+|+||++++|++.++.+|.+||.+|+|||||||+|+|+.|.||+++|+..+|.|++++++|||++|.+++.|+|+++
T Consensus 1 ~~L~IVTP~~~~~~g~~v~~V~~~t~~G~~GILp~HaPlit~L~~G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~Ilad 80 (136)
T PRK13447 1 LRLTIATPLAVVVDELDIVSLRAEDASGGFGILPGHADFLTVLRASVVRWRRADGATHYCAVRGGVLRVTGGARVEIACR 80 (136)
T ss_pred CEEEEEcCCeeEECCCcEEEEEecCCcCceEEcCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEecCCEEEEEec
Confidence 78999999999999734999999999999999999999999999999999877888899999999999983348999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhcc
Q psy9917 101 EAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSS 152 (219)
Q Consensus 101 ~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vsg 152 (219)
++.+.++||..+++.... ++.+++ ....-..+..+++....|.+...+
T Consensus 81 ~ae~~edID~~~a~i~~~--~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~ 128 (136)
T PRK13447 81 EAVLGEDLARLEAVVRAV--RAAQLD--AARRARVEQTRLHAQAVRQLLRYL 128 (136)
T ss_pred eeEchhhcCHHHHHHHHH--HHhhhH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999655554333 222221 111122333556655555444333
No 20
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.94 E-value=2.9e-26 Score=178.92 Aligned_cols=97 Identities=22% Similarity=0.375 Sum_probs=86.8
Q ss_pred EEEEEecCceeee-cCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917 22 DFTLASGNKVFYT-NQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE 100 (219)
Q Consensus 22 ~l~IvTP~~~~~~-~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~ 100 (219)
+|+|+||++++|+ + +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|++++++|||++|.+| .++|+++
T Consensus 1 ~l~IvtP~~~~~~~~-~v~~v~~~~~~G~~GILp~H~p~it~L~~G~l~i~~~~~~~~~~av~gGf~~v~~n-~v~Il~~ 78 (122)
T TIGR03166 1 RLKILTPFRVFLDKL-PVTRIVAETESGSFGLLPGHVDCVAALVPGILIYETADGGEHYVAVDQGILVKRGA-DVEVSVR 78 (122)
T ss_pred CeEEECCCeeEEecC-cEEEEEEEcCcCCeEEcCCCcCeEeEeccEEEEEEECCCcEEEEEEeeeEEEEECC-EEEEEec
Confidence 5899999999999 8 99999999999999999999999999999999998777888899999999999987 8999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHH
Q psy9917 101 EAHPVDSLDASAARDVLSKAQS 122 (219)
Q Consensus 101 ~a~~~~~Id~~~~~~~~e~a~~ 122 (219)
++.+.++||. +...++.+..
T Consensus 79 ~ae~~edId~--l~~~i~~~~~ 98 (122)
T TIGR03166 79 NAVGGTELEE--LEEAVRQEFL 98 (122)
T ss_pred eeEcccCHHH--HHHHHHHHHH
Confidence 9999999953 4444444433
No 21
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.93 E-value=4.4e-26 Score=168.42 Aligned_cols=84 Identities=30% Similarity=0.579 Sum_probs=77.7
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcC-CeEEEEEEecCeEEEecCceEEE
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETE-GVSQKIFVSSGTITVNDDSSVQI 97 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~-g~~~~~~vsgG~~~V~~~g~v~I 97 (219)
++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|+||.++|+..+ +++++++++|||++|.+| .+.|
T Consensus 2 ~~l~l~IvtP~~~~~~~-~v~~V~~p~~~G~~gILp~H~p~it~L~~G~l~i~~~~~~~~~~~~v~gGf~~v~~n-~v~I 79 (88)
T PRK13449 2 AKLHFELVTPERLLRSG-EVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFHVQGGFAEVNEK-GLTI 79 (88)
T ss_pred CeeEEEEEcCCceEEcc-EEEEEEEeCCccCeEEcCCCcceEEEeeceEEEEEECCCCeEEEEEEcceEEEEECC-EEEE
Confidence 47999999999999998 99999999999999999999999999999999998744 457889999999999987 7999
Q ss_pred eeCcccC
Q psy9917 98 IAEEAHP 104 (219)
Q Consensus 98 la~~a~~ 104 (219)
++++++-
T Consensus 80 l~~~ae~ 86 (88)
T PRK13449 80 LAEHAVE 86 (88)
T ss_pred EcceeEE
Confidence 9998864
No 22
>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....
Probab=99.93 E-value=1.9e-25 Score=161.93 Aligned_cols=80 Identities=36% Similarity=0.738 Sum_probs=76.1
Q ss_pred cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE 100 (219)
Q Consensus 21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~ 100 (219)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||.++|+..||+|+++++++||++|.+| ++.|+++
T Consensus 1 l~l~IvtP~~~~~~~-~v~~v~~~t~~G~~gIl~~H~p~i~~l~~G~~~i~~~~~~~~~~~v~~G~~~v~~n-~v~Il~~ 78 (80)
T PF02823_consen 1 LKLKIVTPDGIFFEG-EVESVVLPTTDGEFGILPNHAPFITALKPGELRIKDADGEEKKFAVSGGFLEVKDN-EVTILAD 78 (80)
T ss_dssp EEEEEEESSSEEEEE-EESEEEEEBSSSEEEEETTS-SEEEEEESEEEEEEESSSEEEEEEESSEEEEEETS-EEEEEES
T ss_pred CEEEEEcCCceEEee-EEEEEEEECCCcChhhccCCchhheeccceEEEEEEcCCCEEEEEEcCEEEEEECC-EEEEEEc
Confidence 789999999999998 99999999999999999999999999999999999889999999999999999976 9999998
Q ss_pred cc
Q psy9917 101 EA 102 (219)
Q Consensus 101 ~a 102 (219)
+|
T Consensus 79 ~A 80 (80)
T PF02823_consen 79 EA 80 (80)
T ss_dssp SE
T ss_pred cC
Confidence 75
No 23
>KOG1758|consensus
Probab=99.84 E-value=2.3e-21 Score=153.45 Aligned_cols=131 Identities=37% Similarity=0.415 Sum_probs=109.1
Q ss_pred cCeEEEEEEcCCeEEEEEEec-CeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy9917 64 KPGVITVYETEGVSQKIFVSS-GTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139 (219)
Q Consensus 64 ~~G~l~i~~~~g~~~~~~vsg-G~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~ 139 (219)
.|-.+++...- ....+.+| .+-+|+ ..|.+|||++|.|.+..++||.+......
T Consensus 25 ~~~~L~l~fa~--P~~t~~~~a~V~qVdvPt~sG~~GVLanHVPti~~LkPGvvsV~~~~-------------------- 82 (159)
T KOG1758|consen 25 IPEKLKLTFAL--PNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGS-------------------- 82 (159)
T ss_pred CCceeEEEEec--CceEEecCceeEEEeccccCcceeeecccCcchheeccceEEEEeCC--------------------
Confidence 34555655531 12234444 566665 56899999999999999999998876541
Q ss_pred HHHHHHhhhhhccceEEEcCCCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 140 VEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 140 l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
.....||+||||+.|+||++++|||++|++++|||+..|++.|++||+++.++.++.++++|+++++++++|++||+
T Consensus 83 ---~~~~k~FvSsGfa~v~~ds~~~ila~EA~~ledid~~~a~q~Le~aqa~l~~a~de~~~AEA~I~vev~ealv~Al~ 159 (159)
T KOG1758|consen 83 ---GTKSKYFVSSGFATVNADSSLQILAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAEAQIRVEVAEALVKALK 159 (159)
T ss_pred ---CcEEEEEEecceEEEcCCCeEEEEehhccccccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhC
Confidence 22336899999999999999999999999999999999999999999999999999999999999999999999985
No 24
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.77 E-value=2.6e-19 Score=141.69 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=93.8
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|.++.|++|.++.... ......++++|||++|+||+ |+||+++|
T Consensus 28 ~~G~~gILp~H~P~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gGf~eV~~n~-v~Ila~~a 83 (133)
T PRK14736 28 SEGEMTVLPGHAPVLTTLKVGVITVTET-----------------------TGNGKRIYVRGGFAEIGPTS-VTVLAERA 83 (133)
T ss_pred CccCeeEcCCChhhEeEecceEEEEEEC-----------------------CCcEEEEEEeceEEEEECCE-EEEEeeee
Confidence 3689999999999999999999887431 12344589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
++.++||.+++++++++|++.+.++.++..+.++++.+.+++.+.+.++
T Consensus 84 e~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (133)
T PRK14736 84 APVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAKATLS 132 (133)
T ss_pred EEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888999999999999999999887764
No 25
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.75 E-value=7.7e-19 Score=139.03 Aligned_cols=99 Identities=7% Similarity=0.114 Sum_probs=86.1
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......++|+|||++|+||+ |+||+|.|
T Consensus 28 ~~G~~gIL~~Haplit~L~~G~~~i~~~-----------------------~~~~~~~~v~gGf~ev~~n~-v~Ilad~a 83 (133)
T PRK00539 28 TEGYAGLNRNRAPLIAAIQSHVCKITFA-----------------------DKTKRSAIIGAGLLLIKKTE-AKIFTENF 83 (133)
T ss_pred CccCceecCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeeeEEEEECCE-EEEEECeE
Confidence 4689999999999999999998877431 12334579999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
++.+|||.++|++++++|+++|++..++.++.+|+..|....+
T Consensus 84 e~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~ 126 (133)
T PRK00539 84 VFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELL 126 (133)
T ss_pred EchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887788899999988876654
No 26
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=99.75 E-value=6.8e-19 Score=139.52 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=84.3
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|++|||++|+|+++.|.|+.++..... ......+||+|||++|+|+. ||||||+|
T Consensus 28 ~eGe~GILp~H~Plit~Lk~g~v~i~~~~----------------------~~~~~~i~VsgGfleV~~~~-vtIlad~A 84 (135)
T COG0355 28 TEGELGILPGHAPLITALKPGVVRIKTED----------------------GDKEEKIAVSGGFLEVQPNE-VTILADSA 84 (135)
T ss_pred CCeeeecCCCCccceeeecCcEEEEEEcC----------------------CCceEEEEEeccEEEEeCCE-EEEEEcee
Confidence 47899999999999999999998876431 01335889999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEV 210 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~ 210 (219)
++.+|||++++++++++|++.++++.++.++.+|+..|..
T Consensus 85 ~~~~did~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~ 124 (135)
T COG0355 85 ERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAALAR 124 (135)
T ss_pred EecccCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999999999988777788888877653
No 27
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=99.74 E-value=1.7e-18 Score=137.21 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=88.6
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++...+ .....++++|||++|++|+ |+||+++|
T Consensus 27 ~~G~~gIL~~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a 81 (134)
T CHL00063 27 NSGQIGVLPNHAPIATALDIGVLRIRLN------------------------DQWLTMALMGGFARIGNNE-ITILVNDA 81 (134)
T ss_pred CccCceecCCCcceEeEecceEEEEEEC------------------------CeEEEEEEcceEEEEECCE-EEEEECee
Confidence 4789999999999999999999887422 2345589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALV 215 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~ 215 (219)
++.+|||.++|++++++|++.|.+..++.++.+++..|....+-.
T Consensus 82 ~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ra~arl 126 (134)
T CHL00063 82 EKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKRARARV 126 (134)
T ss_pred EchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888899999999988876633
No 28
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.72 E-value=6.2e-18 Score=135.68 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=83.4
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... .....++++|||++|+||+ ||||++.|
T Consensus 30 ~~G~~GILp~H~plit~L~~G~l~i~~~------------------------~~~~~~~v~gGf~eV~~n~-v~Ilad~a 84 (145)
T PRK13452 30 SAGEMGIAYGHTELLSTLPAGVVNVRKD------------------------QHTDVLYVSGGIVEVTPTR-VTIMVDDM 84 (145)
T ss_pred CccCeEecCCCcceEeeecceEEEEEEC------------------------CcEEEEEEcceEEEEECCE-EEEEeCee
Confidence 3689999999999999999999887422 2334589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSS-ASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~-~~~~~~~~~a~~~l~~~~~ 213 (219)
++.++||.++|++++++|+++|.+ ..++.++.+|+..|....+
T Consensus 85 e~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~ 128 (145)
T PRK13452 85 ERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADA 128 (145)
T ss_pred eccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 4466778888877776443
No 29
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.71 E-value=6.6e-18 Score=134.66 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=85.8
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++...+ .....++++|||++|+||+ |+||+++|
T Consensus 27 ~~G~~gILp~H~P~it~L~~G~v~i~~~------------------------g~~~~~~v~gGf~ev~~~~-v~Ila~~a 81 (139)
T PRK14735 27 KDGRVGILPRHAPLLTILEPGELDIVKN------------------------GVRTPFAISGGFMEVLPHR-VTILADTA 81 (139)
T ss_pred CccCeeEcCCCcceEEEecceEEEEEEC------------------------CeEEEEEEcccEEEEeCCE-EEEEeeeE
Confidence 3789999999999999999999887421 2345589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
++.+|||.+++++++++|++.|.+..++.++.+++..|....+
T Consensus 82 ~~~edID~~~a~~a~e~Ae~~l~~~~~~~~~~~a~~~L~ra~a 124 (139)
T PRK14735 82 ERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMV 124 (139)
T ss_pred EEcccCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887888889998888776543
No 30
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.71 E-value=1e-17 Score=133.01 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=87.8
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++...+ .....++++|||++|+||+ |+||+++|
T Consensus 28 ~~G~~gILp~H~p~it~L~pG~v~i~~~------------------------~~~~~~~v~gGf~eV~~~~-v~Ila~~a 82 (135)
T PRK13448 28 VEGDFGVLAGHAPVVAVIRPGILTVTAG------------------------GNQQKIVVLGGLAEVSEKG-LTVLADVA 82 (135)
T ss_pred CccCeEEcCCCcceEeEeccEEEEEEEC------------------------CcEEEEEEeccEEEEECCE-EEEEEeee
Confidence 4789999999999999999999887421 2233589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAA 218 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~ 218 (219)
++.+|||.+++++++++|+++|.+. .+....+|...|.+++.+.+++
T Consensus 83 ~~~~dID~~~a~~~~~~Ae~~l~~~-~~~~l~ra~~rl~~~~~~~~~~ 129 (135)
T PRK13448 83 TSVADLDLAQFAATIAEMEAQLAGK-VGDELDRAIERLDHFKSIQHQL 129 (135)
T ss_pred EEcccCCHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999774 4466777777799999888775
No 31
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.69 E-value=1.5e-17 Score=131.95 Aligned_cols=99 Identities=25% Similarity=0.313 Sum_probs=87.6
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......+|++|||++|++|+ |+||+++|
T Consensus 28 ~~G~~gILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gG~~~v~~n~-v~Ila~~a 83 (135)
T PRK00571 28 TEGELGILPGHAPLLTALKPGVVRIKKD-----------------------DGEEEVIAVSGGFLEVQPDK-VTVLADSA 83 (135)
T ss_pred CccCeeecCCCcceEEEeeceEEEEEEC-----------------------CCcEEEEEEccEEEEEECCE-EEEEEeeE
Confidence 4789999999999999999999887532 12334689999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
++.+|||.+++++++++|++.|.+..++.++.++++.|....+
T Consensus 84 ~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~ 126 (135)
T PRK00571 84 ERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIA 126 (135)
T ss_pred EEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888999999998887655
No 32
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.69 E-value=1.9e-17 Score=131.52 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=85.7
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++...+ .....++++|||++|++|+ |+||++.|
T Consensus 29 ~~G~~gILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a 83 (136)
T PRK13446 29 VLGEFGVLPGHAPFLTALKIGELTYKKG------------------------GKTHYVAVNGGFAEVSNNK-VTVLAETA 83 (136)
T ss_pred CccCeEEcCCCcceEEEeeccEEEEEeC------------------------CcEEEEEEcCEEEEEECCE-EEEEeeeE
Confidence 4789999999999999999998876421 2334589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
++.++||.+++++++++|++.|.+..++.++.+++..|....+
T Consensus 84 ~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~a~~ 126 (136)
T PRK13446 84 ERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALERALI 126 (136)
T ss_pred EEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888889999887776554
No 33
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=99.69 E-value=2.7e-17 Score=129.64 Aligned_cols=104 Identities=27% Similarity=0.283 Sum_probs=92.0
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++.... ......++++|||++|++|+ |+|++++|
T Consensus 26 ~~G~~giL~~H~p~i~~L~~G~v~i~~~-----------------------~~~~~~~~v~gG~~~v~~~~-v~Il~~~a 81 (130)
T TIGR01216 26 SEGELGILPGHAPLITALKPGVVRIRKL-----------------------GDDWEHIAVSGGFAEVQPDK-VTILADGA 81 (130)
T ss_pred CcCCeeecCCChhhEeEecceEEEEEEC-----------------------CCCEEEEEEcCcEEEEECCE-EEEEEeEE
Confidence 3789999999999999999999887532 12345689999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhh
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAA 218 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~ 218 (219)
++.++||.+++++++++|+++|++..++.++.+|++.|....+..++.
T Consensus 82 ~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~~~ 129 (130)
T TIGR01216 82 VFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEAL 129 (130)
T ss_pred EEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888999999999999998865554
No 34
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.68 E-value=2.3e-17 Score=130.97 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|.++.|++|.++.... .....++++|||++|+||+ |+||+++|
T Consensus 29 ~~Ge~GILp~H~Plit~L~pG~v~i~~~------------------------~~~~~~avsgGf~eV~~n~-V~Ilad~a 83 (136)
T PRK13443 29 ADGDMTAMEGHAPTITTLRPGILRAHGP------------------------SGTQEYAVTGGFAEINATS-ISVLAEKA 83 (136)
T ss_pred CccCeeEcCCCcceEEEecceEEEEEEC------------------------CCeEEEEEcceEEEEECCE-EEEEeCee
Confidence 4789999999999999999999887432 1122379999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHhh
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSE---TAKAEAQIAVEVAEALVAA 217 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~---~~~~~a~~~l~~~~~l~~~ 217 (219)
++.+|||.+++++++++|+++|++..++ .++.++++.+...+++.+.
T Consensus 84 ~~~edID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (136)
T PRK13443 84 IPVEELTGAVLDEFIAEARELASVALPENEPGDVDDAAKTLADMLALGAH 133 (136)
T ss_pred EEhhhCCHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875433 2667777777777777654
No 35
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.68 E-value=2.5e-17 Score=130.26 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=85.0
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+||.++.... ......++++|||++|++|+ |+||+++|
T Consensus 28 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gGf~~v~~~~-v~Il~~~a 83 (132)
T PRK13450 28 LDGDIAILPNHVPLITYLKPTITKIIDE-----------------------NGEKKKIFTSSGVLKVENNE-VYILCDAS 83 (132)
T ss_pred CccCceecCCCcccEeEEccEEEEEEEC-----------------------CCcEEEEEEcCeEEEEECCE-EEEEehhh
Confidence 4689999999999999999998876422 12345589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
++.+|||.+++++++++|++.| +..++.++.+|+..|....+
T Consensus 84 ~~~~~ID~~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~ 125 (132)
T PRK13450 84 EWPEEIDIKRAENAKKRAEERL-RKKDEIDVKRAELALFRAIA 125 (132)
T ss_pred cccccCCHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999 56688889999988877665
No 36
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.59 E-value=7.9e-16 Score=120.94 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=70.5
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|.++.|+||.++...+ .....++++|||++|++|+ |+||++.|
T Consensus 30 ~~G~~gILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gG~~~v~~~~-v~Il~~~a 84 (127)
T PRK13444 30 SEGFFGILPNHAPLVATLGIGLLEIRKG------------------------EKLKRISVEGGFCEVKDNQ-ISILTDHG 84 (127)
T ss_pred CccCeEecCCCcCeEeEeccEEEEEEEC------------------------CeEEEEEEeceEEEEECCE-EEEEEeEE
Confidence 4789999999999999999998887422 2334589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhc
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSS 194 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~ 194 (219)
++.+|||.+++++++++|+++|++
T Consensus 85 ~~~~diD~~~a~~~~~~Ae~~l~~ 108 (127)
T PRK13444 85 ALKEDIDHEHEKKLLAEAEKLPPS 108 (127)
T ss_pred EehhhCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999976
No 37
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=99.56 E-value=8.7e-16 Score=118.24 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=69.9
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+++.++..... . ......++++|||++|.+|+ |+||+++|
T Consensus 29 ~~G~~gILp~H~p~it~L~~G~l~i~~~~--------~-------------~~~~~~~~v~gGf~~v~~n~-v~Ila~~a 86 (112)
T PRK01474 29 EEGMFGVLPSHVPMIVSLKAGLVQVYIDD--------M-------------HKSENTYLISGGVTEVTGNY-INIATETA 86 (112)
T ss_pred CccCceecCCCcceEEEecceEEEEEECC--------C-------------CCcEEEEEEcceEEEEECCE-EEEEeCee
Confidence 46899999999999999999998874210 0 01234578999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhc
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSS 194 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~ 194 (219)
++.++||.++|++++++|++.|.+
T Consensus 87 ~~~~~ID~~~a~~~~~~A~~~l~~ 110 (112)
T PRK01474 87 INVTNLSEAEIATKLLDLQKTLSD 110 (112)
T ss_pred EEhhhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999865
No 38
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.55 E-value=8.2e-16 Score=116.34 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=66.7
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++...+ .....++++|||++|++|+ |+||+++|
T Consensus 25 ~~G~~GILp~H~p~it~L~~G~l~i~~~------------------------~~~~~~~v~gGf~~v~~~~-v~Il~~~a 79 (101)
T PRK13451 25 VEGEMGILPRRAPIIAKLSVCDVKIKSG------------------------DDEYEYKVADGFLHCDGKN-VIIITEEA 79 (101)
T ss_pred CccCeEEcCCCcceEEEecceEEEEEEC------------------------CcEEEEEEeccEEEEECCE-EEEEEeEe
Confidence 4689999999999999999998887422 2334589999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSE 191 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~ 191 (219)
++.+|||.++|++++++|+..
T Consensus 80 ~~~e~ID~~~a~~a~~~Ae~~ 100 (101)
T PRK13451 80 GREEEISPHRYLGARERVERV 100 (101)
T ss_pred EehhhCCHHHHHHHHHHhhcc
Confidence 999999999999999999853
No 39
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=99.25 E-value=4.2e-12 Score=100.91 Aligned_cols=71 Identities=21% Similarity=0.118 Sum_probs=58.2
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEc-CCCcEEEEecc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVN-DDSSVQIIAEE 169 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~-~~~~vtvla~~ 169 (219)
.+|+++||++|+|+++.|+++.++.... ......++++|||++|+ +| .|+||+++
T Consensus 26 ~~G~~GILp~HaPlit~L~~G~l~i~~~-----------------------~g~~~~~aVsGGfleV~~~n-~V~Ilad~ 81 (136)
T PRK13447 26 ASGGFGILPGHADFLTVLRASVVRWRRA-----------------------DGATHYCAVRGGVLRVTGGA-RVEIACRE 81 (136)
T ss_pred CcCceEEcCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCcEEEEecCC-EEEEEece
Confidence 3579999999999999999998887432 12345589999999999 77 59999999
Q ss_pred cccCCCCCHHHHHHHH
Q psy9917 170 AHPVDSLDASAARDVL 185 (219)
Q Consensus 170 A~~~~~id~~~a~~~~ 185 (219)
|++.+|||..+++-..
T Consensus 82 ae~~edID~~~a~i~~ 97 (136)
T PRK13447 82 AVLGEDLARLEAVVRA 97 (136)
T ss_pred eEchhhcCHHHHHHHH
Confidence 9999999976655433
No 40
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=99.25 E-value=1.7e-12 Score=101.45 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=58.7
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+|+.++.... ......++++|||++|.+|. |+||+++|
T Consensus 25 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~av~gGf~~v~~n~-v~Il~~~a 80 (122)
T TIGR03166 25 ESGSFGLLPGHVDCVAALVPGILIYETA-----------------------DGGEHYVAVDQGILVKRGAD-VEVSVRNA 80 (122)
T ss_pred CcCCeEEcCCCcCeEeEeccEEEEEEEC-----------------------CCcEEEEEEeeeEEEEECCE-EEEEecee
Confidence 3689999999999999999999887432 12344578999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQS 190 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~ 190 (219)
++.+|||. +.++++.+..
T Consensus 81 e~~edId~--l~~~i~~~~~ 98 (122)
T TIGR03166 81 VGGTELEE--LEEAVRQEFL 98 (122)
T ss_pred EcccCHHH--HHHHHHHHHH
Confidence 99999955 3335554443
No 41
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=99.23 E-value=1.9e-12 Score=102.29 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=58.9
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......++++|||++|.+|+ |+||++.|
T Consensus 28 ~~G~~GILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~av~gGf~ev~~n~-V~Ilad~a 83 (131)
T PRK06228 28 REGSFGLLPHRLDCVAALVPGILVYETE-----------------------AEGEVYVAVDEGILVKTGPD-VLVSVRNA 83 (131)
T ss_pred CccCeEECCCCcceEeeecceEEEEEEC-----------------------CCcEEEEEEcceEEEEECCE-EEEEEcee
Confidence 3789999999999999999999887421 12345689999999999995 99999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQS 190 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~ 190 (219)
++.+|||. .+++++++.+
T Consensus 84 e~~edid~--~~~~l~~~~~ 101 (131)
T PRK06228 84 IGGTDLGE--LREAVEQEFL 101 (131)
T ss_pred EchhhHHH--HHHHHHHHHH
Confidence 99998865 4444555533
No 42
>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=98.79 E-value=3.3e-10 Score=83.66 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=49.2
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|.++.|+++.++....+ ..+...++++|||++|++|+ |+||+++|
T Consensus 28 ~~G~~gILp~H~p~it~L~~G~l~i~~~~----------------------~~~~~~~~v~gGf~~v~~n~-v~Il~~~a 84 (88)
T PRK13449 28 TEGDFGVLAGHAPFMTTLREGEVTVYSSD----------------------GAAPEVFHVQGGFAEVNEKG-LTILAEHA 84 (88)
T ss_pred CccCeEEcCCCcceEEEeeceEEEEEECC----------------------CCeEEEEEEcceEEEEECCE-EEEEccee
Confidence 47899999999999999999998875311 12234589999999999995 99999999
Q ss_pred ccC
Q psy9917 171 HPV 173 (219)
Q Consensus 171 ~~~ 173 (219)
+.+
T Consensus 85 e~~ 87 (88)
T PRK13449 85 VEA 87 (88)
T ss_pred EEc
Confidence 754
No 43
>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=98.78 E-value=5.5e-10 Score=82.62 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=50.1
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|+++.++...+ ..+...++++|||++|++|+ |+||+++|
T Consensus 30 ~~G~~gILp~H~p~it~L~~G~l~i~~~-----------------------~~~~~~~~v~gG~~~v~~n~-v~Il~~~a 85 (89)
T PRK13442 30 TEGDIGILPGHEPLLGVLESGTVTVVTP-----------------------GGERISAAVDGGFISFDSNK-LTVLAERA 85 (89)
T ss_pred CcCCcEecCCCcCeEEEEcceEEEEEEC-----------------------CCcEEEEEEccEEEEEECCE-EEEEEeEE
Confidence 4689999999999999999999887532 12445689999999999995 99999999
Q ss_pred ccC
Q psy9917 171 HPV 173 (219)
Q Consensus 171 ~~~ 173 (219)
+++
T Consensus 86 e~~ 88 (89)
T PRK13442 86 ELV 88 (89)
T ss_pred EEC
Confidence 875
No 44
>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 2WSS_H 1E79_H 2JDI_H 2W6I_H 2W6H_H 2W6J_H 2CK3_H 2V7Q_H 1H8E_H 2XND_H ....
Probab=98.46 E-value=6.4e-09 Score=75.12 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=47.4
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|.+..|+++.++.... ..+.+.++++|||++|.+| .|+|++++|
T Consensus 25 ~~G~~gIl~~H~p~i~~l~~G~~~i~~~-----------------------~~~~~~~~v~~G~~~v~~n-~v~Il~~~A 80 (80)
T PF02823_consen 25 TDGEFGILPNHAPFITALKPGELRIKDA-----------------------DGEEKKFAVSGGFLEVKDN-EVTILADEA 80 (80)
T ss_dssp SSSEEEEETTS-SEEEEEESEEEEEEES-----------------------SSEEEEEEESSEEEEEETS-EEEEEESSE
T ss_pred CCcChhhccCCchhheeccceEEEEEEc-----------------------CCCEEEEEEcCEEEEEECC-EEEEEEccC
Confidence 4789999999999999999998887532 2456788999999999998 599999987
No 45
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=97.50 E-value=0.00024 Score=46.49 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhc
Q psy9917 106 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVS 151 (219)
Q Consensus 106 ~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~Vs 151 (219)
++||+.+++..+++|++.|.+..++.++.+++.+|+++..++.++.
T Consensus 1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~aRl~~~~ 46 (48)
T PF00401_consen 1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAIARLQAAK 46 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999988999999999999999988753
No 46
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=97.33 E-value=0.00035 Score=45.70 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy9917 174 DSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAE 212 (219)
Q Consensus 174 ~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~ 212 (219)
+|||+++|++++++|++.|.++.++.++.+|++.|..-.
T Consensus 1 ~dID~~rA~~a~~~Ae~~l~~~~~~~e~~~A~~~L~rA~ 39 (48)
T PF00401_consen 1 EDIDEERAEEAKERAEERLEKAKSDKEYARAQAALKRAI 39 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSCSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Confidence 689999999999999999999888889999999887644
No 47
>PRK10579 hypothetical protein; Provisional
Probab=85.26 E-value=6.6 Score=29.30 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=49.7
Q ss_pred eeeecCceeEEEEecCcee---eee-cCC------CccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceEEEee
Q psy9917 31 VFYTNQNVKQVDVPSFSGA---FGI-LPN------HVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 31 ~~~~~~~v~~V~~~t~~G~---~gI-L~~------H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+.|+| +|.+..+-..+|. +|| +|| |+|-+..+..|.++++.++. +|+ -+-.|.-..|-.|..+.|-+
T Consensus 6 vYFdG-kv~S~~~~~~dG~~kTlGVm~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~-~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 6 EYFSG-KVKSIGFDSSSTGRASVGVMAEGEYTFSTAEPEEMTVISGALNVLLPGATDWQ-VYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred eEECC-eEEEEEEEcCCCCeeEEEEEeeeEEEEcCCCcEEEEEEeeEEEEECCCCcccE-EeCCCCEEEECCCCeEEEEE
Confidence 57998 9999999999965 674 444 78888889999999998653 354 45556666776665666654
Q ss_pred C
Q psy9917 100 E 100 (219)
Q Consensus 100 ~ 100 (219)
.
T Consensus 84 ~ 84 (94)
T PRK10579 84 A 84 (94)
T ss_pred C
Confidence 3
No 48
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=70.25 E-value=27 Score=26.10 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=42.3
Q ss_pred eeeecCceeEEEEecCcee---ee-ecCC------CccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceEEEee
Q psy9917 31 VFYTNQNVKQVDVPSFSGA---FG-ILPN------HVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSVQIIA 99 (219)
Q Consensus 31 ~~~~~~~v~~V~~~t~~G~---~g-IL~~------H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v~Ila 99 (219)
+.|+| +|.++.+...+|. +| ++|| +.|-+..+..|.+.++.++. +|+ -+-.|....|-.|..+.|-+
T Consensus 6 ~YFdG-kV~S~~~~~~dG~~~TlGVm~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~-~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 6 VYFDG-KVKSITFEFADGSKKTLGVMLPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQ-TYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp EECCC-TEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-E-EEETT-EEEE-TTEEEEEEE
T ss_pred EEeCC-eEEEEEEEcCCCCcceEEEEeeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccE-EeCCCCeEEECCCCeEEEEE
Confidence 57898 9999999999964 45 3454 56667777778888887643 354 34556666666555565544
Q ss_pred C
Q psy9917 100 E 100 (219)
Q Consensus 100 ~ 100 (219)
.
T Consensus 84 ~ 84 (94)
T PF06865_consen 84 K 84 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 49
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=30.29 E-value=3.4e+02 Score=28.12 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=57.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHhhh-h-----hc---cceEEEcCCCcEEEEec
Q psy9917 102 AHPVDSLDASAARDVLSKAQSELSS----ASSETAKAEAQIAVEVAEALKI-F-----VS---SGTITVNDDSSVQIIAE 168 (219)
Q Consensus 102 a~~~~~Id~~~~~~~~e~a~~~l~~----~~~~~~~~~~~~~l~~~~~~l~-~-----Vs---gGf~eV~~~~~vtvla~ 168 (219)
+..+++=|...+++.+.+|++.|+. .-++.|..+....|+.+...+. . -. ++...-++|
T Consensus 490 Al~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~-------- 561 (851)
T TIGR02302 490 ALGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPN-------- 561 (851)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCcc--------
Confidence 4456677888888888888888765 4467788888888877766542 1 11 112111111
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy9917 169 EAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 214 (219)
Q Consensus 169 ~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l 214 (219)
...+.....++=+++-|+..++ -++++|+..|++|+.|
T Consensus 562 ----~~~l~~~dLq~Mmd~ieela~~----G~~~~A~qlL~qlq~m 599 (851)
T TIGR02302 562 ----TKVLRQQDLQNMMDQIENLARS----GDRDQAKQLLSQLQQM 599 (851)
T ss_pred ----ccccCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 2456666666666666555543 3445566666665543
No 50
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.13 E-value=2.7e+02 Score=20.51 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=45.9
Q ss_pred CceeeecCceeEEEEecCc---eeeeecCC-------CccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceEEE
Q psy9917 29 NKVFYTNQNVKQVDVPSFS---GAFGILPN-------HVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSVQI 97 (219)
Q Consensus 29 ~~~~~~~~~v~~V~~~t~~---G~~gIL~~-------H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v~I 97 (219)
....|+| +|+++-+...+ -..|||.- -.|-+.....|-++++..+. +|+ .+-.|....|-.|.++.+
T Consensus 4 ~NeYFdG-kvkSigF~~~s~g~asVGVm~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq-~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 4 SNEYFDG-KVKSIGFSSSSTGRASVGVMAPGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQ-VYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred cceeecc-eEEEEEeccCCCCceeEEEEeceeEEeccCCceEEEEEeeEEEEEcCCCcccE-EecCCceEEcCCCCeEEE
Confidence 3467998 99999997763 35676643 35666677778888876543 454 455677777765556665
Q ss_pred ee
Q psy9917 98 IA 99 (219)
Q Consensus 98 la 99 (219)
-.
T Consensus 82 qV 83 (94)
T COG3123 82 QV 83 (94)
T ss_pred EE
Confidence 43
No 51
>PF11591 2Fe-2S_Ferredox: Ferredoxin chloroplastic transit peptide; InterPro: IPR023383 This entry represent the N-terminal transit peptide of a number of algal petF genes. The peptide is removed during transit into the chloroplast lumen. The structure of chloroplast ferredoxin in water is unstructured however in a 30:70 molar-ratio mixture of 2,2,2-trifluoroethanol, residues 3 to 13 form an alpha-helix. The rest of the peptide remains unstructured []. This domain is the N-terminal of the [2Fe-2S), ferredoxin, from, C.reinhardtii:, petF., This, protein, catalyses, the, final, reaction, in, a, pathway, which, allows, the, production, of, H(2), from, water, in, the, chloroplast, ]. ; PDB: 1FCT_A.
Probab=26.10 E-value=35 Score=20.14 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=13.3
Q ss_pred hhhhhchhhhhh-hhccccccEE
Q psy9917 2 AARLVTSATRLA-RRGYADQMDF 23 (219)
Q Consensus 2 ~~~~~~~~~~~~-~~~~a~~l~l 23 (219)
|||..-++|..| +|-.+.++.+
T Consensus 10 aarvagarpavr~arpsart~s~ 32 (34)
T PF11591_consen 10 AARVAGARPAVRAARPSARTVSV 32 (34)
T ss_dssp HHHT-TSGGGTTTTSSS-S----
T ss_pred HHHHccCchhhhccCcccceeec
Confidence 688889999999 7766666554
No 52
>KOG0481|consensus
Probab=25.74 E-value=1.4e+02 Score=29.52 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=42.1
Q ss_pred eEEEEEEecCeEEEecCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceE
Q psy9917 76 VSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTI 155 (219)
Q Consensus 76 ~~~~~~vsgG~~~V~~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~ 155 (219)
..+.|+..||-+-..++|.|.| +....+.+-|.-.+.++.++ ..+-.-..|.-
T Consensus 413 ~tReFylEGGAMVLADgGVvCI--DEFDKMre~DRVAIHEAMEQ-------------------------QTISIAKAGIT 465 (729)
T KOG0481|consen 413 STREFYLEGGAMVLADGGVVCI--DEFDKMREDDRVAIHEAMEQ-------------------------QTISIAKAGIT 465 (729)
T ss_pred CcceEEEecceEEEecCCEEEe--ehhhccCchhhhHHHHHHHh-------------------------hhHHHhhhcce
Confidence 4467899999887777764333 56666666665555444431 22333357899
Q ss_pred EEcCCCcEEEEec
Q psy9917 156 TVNDDSSVQIIAE 168 (219)
Q Consensus 156 eV~~~~~vtvla~ 168 (219)
++.+++ ++|||-
T Consensus 466 T~LNSR-tSVLAA 477 (729)
T KOG0481|consen 466 TTLNSR-TSVLAA 477 (729)
T ss_pred eeecch-hhhhhh
Confidence 999985 999984
No 53
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=24.97 E-value=1.1e+02 Score=31.61 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=37.5
Q ss_pred cEEEEecccccCCCCCHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q psy9917 162 SVQIIAEEAHPVDSLDASAARDVLSKAQSELSS----ASSETAKAEAQIAVE 209 (219)
Q Consensus 162 ~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~----~~~~~~~~~a~~~l~ 209 (219)
.+..|=+-|+.++|=|...|++++++||++|++ ..++++.++.-.+|.
T Consensus 482 v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR 533 (851)
T TIGR02302 482 VADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLR 533 (851)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 466677889999999999999999999999976 345666666544443
No 54
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=23.86 E-value=1.2e+02 Score=31.27 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=35.9
Q ss_pred cEEEEecccccCCCCCHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHH
Q psy9917 162 SVQIIAEEAHPVDSLDASAARDVLSKAQSELSSA----SSETAKAEAQIA 207 (219)
Q Consensus 162 ~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~----~~~~~~~~a~~~ 207 (219)
.+..|=+-|+.++|=|...|.+++++||++|+++ .++++..+.-.+
T Consensus 451 v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~e 500 (820)
T PF13779_consen 451 VADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQE 500 (820)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677888999999999999999999999999763 345555544333
No 55
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.76 E-value=4.8e+02 Score=26.89 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=58.2
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHHHHhhhh-h-----ccceEEEcCCCcEEEEecc
Q psy9917 100 EEAHPVDSLDASAARDVLSKAQSELSS----ASSETAKAEAQIAVEVAEALKIF-V-----SSGTITVNDDSSVQIIAEE 169 (219)
Q Consensus 100 ~~a~~~~~Id~~~~~~~~e~a~~~l~~----~~~~~~~~~~~~~l~~~~~~l~~-V-----sgGf~eV~~~~~vtvla~~ 169 (219)
+-+..+++=|...++..+.+|++.|.+ ..++.|..+....|+.+...+.- + ..+-..-+|. .
T Consensus 457 ~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~--------~ 528 (820)
T PF13779_consen 457 DLALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPP--------D 528 (820)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcc--------c
Confidence 345567778888899988888888765 44677777777777777665432 1 1111111110 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy9917 170 AHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 214 (219)
Q Consensus 170 A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l 214 (219)
--....+.....++-+++-|+.+.+ -++++|+..|++++.|
T Consensus 529 ~~~~~~~~~~dL~~mmd~ie~la~~----G~~~~A~q~L~qlq~m 569 (820)
T PF13779_consen 529 QGNSQMMSQQDLQRMMDRIEELARS----GRMDEARQLLEQLQQM 569 (820)
T ss_pred chhhhccCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 0112245566666666665555544 3345555566665544
No 56
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=22.39 E-value=6.1e+02 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCC
Q psy9917 104 PVDSLDASAARDVLSKAQSELSSASS 129 (219)
Q Consensus 104 ~~~~Id~~~~~~~~e~a~~~l~~~~~ 129 (219)
.+-.||+...+..+++|+..|....-
T Consensus 80 ~L~~iD~~~y~~al~qAea~la~a~~ 105 (352)
T COG1566 80 VLFRIDPRDYRAALEQAEAALAAAEA 105 (352)
T ss_pred eEEEECcHHHHHHHHHHHHHHHHHHH
Confidence 34478999999999999987776443
No 57
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=22.05 E-value=36 Score=27.73 Aligned_cols=15 Identities=40% Similarity=0.837 Sum_probs=13.2
Q ss_pred CCCccceecccCeEE
Q psy9917 54 PNHVPTLAILKPGVI 68 (219)
Q Consensus 54 ~~H~p~it~L~~G~l 68 (219)
.||+|+++.|+|++.
T Consensus 43 ~GhtPllavlrPNl~ 57 (170)
T COG1795 43 QGHTPLLAVLRPNLA 57 (170)
T ss_pred cCCCceEEEecCCCC
Confidence 389999999999875
Done!