Query psy9917
Match_columns 219
No_of_seqs 255 out of 1553
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:56:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aqt_A ATP synthase; hydrolase 100.0 6.2E-35 2.1E-39 231.2 16.5 130 19-150 2-131 (138)
2 2e5y_A ATP synthase epsilon ch 100.0 5.1E-35 1.7E-39 230.4 14.6 130 17-150 1-130 (133)
3 2rq6_A ATP synthase epsilon ch 100.0 3E-34 1E-38 227.3 13.5 128 21-151 3-133 (138)
4 2xok_H ATP synthase; hydrolase 100.0 1.8E-34 6E-39 233.5 7.6 130 19-150 30-159 (160)
5 2w6j_H F1-ATPase delta subunit 100.0 2.4E-35 8.2E-40 240.4 0.4 132 19-150 36-167 (168)
6 2ck3_H ATP synthase subunit de 100.0 4.7E-35 1.6E-39 233.9 0.4 133 18-150 13-145 (146)
7 2qe7_H ATP synthase subunit ep 100.0 1.4E-34 4.7E-39 228.5 0.5 131 17-151 1-132 (135)
8 3oee_H ATP synthase subunit de 100.0 9.9E-34 3.4E-38 224.3 3.5 132 16-149 5-136 (138)
9 2ck3_H ATP synthase subunit de 99.8 6E-22 2E-26 158.0 -0.7 106 91-219 41-146 (146)
10 2xok_H ATP synthase; hydrolase 99.8 1.3E-21 4.6E-26 158.0 0.9 104 91-219 57-160 (160)
11 2w6j_H F1-ATPase delta subunit 99.8 2.1E-21 7.1E-26 158.1 -0.7 106 91-219 63-168 (168)
12 1aqt_A ATP synthase; hydrolase 99.8 2.8E-20 9.6E-25 147.0 3.4 100 91-214 28-127 (138)
13 2rq6_A ATP synthase epsilon ch 99.8 6.1E-20 2.1E-24 145.1 1.6 107 83-214 16-128 (138)
14 2e5y_A ATP synthase epsilon ch 99.8 5.5E-20 1.9E-24 144.5 1.3 106 83-213 17-125 (133)
15 3oee_H ATP synthase subunit de 99.8 1.5E-21 5.2E-26 154.3 -9.3 104 91-219 35-138 (138)
16 2qe7_H ATP synthase subunit ep 99.7 6.2E-20 2.1E-24 144.5 -3.9 98 91-213 28-126 (135)
17 3hqx_A UPF0345 protein aciad03 91.9 0.44 1.5E-05 35.5 6.3 77 22-100 11-100 (111)
18 3eo6_A Protein of unknown func 86.7 2.5 8.5E-05 31.2 7.0 76 22-99 10-96 (106)
19 2oyz_A UPF0345 protein VPA0057 65.2 16 0.00055 26.2 5.8 65 31-98 7-82 (94)
20 3osx_A 60 kDa chaperonin; alph 48.6 84 0.0029 25.5 8.1 54 152-212 142-195 (201)
21 3m6c_A 60 kDa chaperonin 1; ch 46.2 98 0.0034 25.0 8.1 53 153-212 136-188 (194)
22 3osx_A 60 kDa chaperonin; alph 45.0 25 0.00086 28.6 4.4 40 109-155 160-199 (201)
23 3m6c_A 60 kDa chaperonin 1; ch 42.4 28 0.00097 28.2 4.3 40 109-155 153-192 (194)
No 1
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=100.00 E-value=6.2e-35 Score=231.24 Aligned_cols=130 Identities=25% Similarity=0.441 Sum_probs=125.2
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+|+|+.|+++|||++|.+| .|+|+
T Consensus 2 ~tl~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~g~~~~~~v~gGf~ev~~~-~vtIl 79 (138)
T 1aqt_A 2 STYHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPG-NVTVL 79 (138)
T ss_dssp CCEEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETTTEEEEEEESSEEEEEETT-EEEEE
T ss_pred CEEEEEEEcCCceEEee-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECCCcEEEEEEeCcEEEEECC-EEEEE
Confidence 46999999999999998 99999999999999999999999999999999999888899999999999999987 89999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
++.+.+.++||+.+++..+++|+++|++..++.++.+++.+|+++.+++.+.
T Consensus 80 a~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~ 131 (138)
T 1aqt_A 80 ADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVI 131 (138)
T ss_dssp ESSEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=100.00 E-value=5.1e-35 Score=230.41 Aligned_cols=130 Identities=26% Similarity=0.388 Sum_probs=124.0
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|++ |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+ .+|+|+.|+++|||++|.+| .|+
T Consensus 1 M~~-~~l~ivtP~~~~~~~-~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~-~~~~~~~~~v~gGf~ev~~~-~vt 76 (133)
T 2e5y_A 1 MKT-IHVSVVTPDGPVYED-DVEMVSVKAKSGELGILPGHIPLVAPLEISAARLK-KGGKTQYIAVSGGFLEVRPD-KVT 76 (133)
T ss_dssp CCC-EEEEEEETTEEEEEE-EESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEETT-EEE
T ss_pred CCc-eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-ECCeEEEEEEcCeEEEEECC-EEE
Confidence 554 999999999999998 99999999999999999999999999999999999 58899999999999999987 899
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
|+++.+.+.++||..+++..+++|+++|++..++.++.+++.+|+++.+++...
T Consensus 77 Ila~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~rl~~~ 130 (133)
T 2e5y_A 77 ILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVA 130 (133)
T ss_dssp EEESSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888999999999999999998764
No 3
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=100.00 E-value=3e-34 Score=227.31 Aligned_cols=128 Identities=29% Similarity=0.392 Sum_probs=121.9
Q ss_pred cEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEeeC
Q psy9917 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAE 100 (219)
Q Consensus 21 l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Ila~ 100 (219)
|+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|.||+++|+. +|+|+.|+++|||++|.+| .|+|+++
T Consensus 3 l~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~-~~~~~~~~v~gGf~ev~~~-~vtIla~ 79 (138)
T 2rq6_A 3 MTVRVIAPDKTVWDA-PAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAIALMGGFAEVENN-EVTILVN 79 (138)
T ss_dssp EEEEEECSSSEEEEE-EESEEEECCTTSCEEEESSCCSEEEEECSEEEEEES-SSCEEEEEECSEEEEECSS-CEEEEES
T ss_pred eEEEEEcCCceEEee-eEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEE-CCeEEEEEEcCcEEEEECC-EEEEEEe
Confidence 899999999999998 999999999999999999999999999999999986 6889999999999999987 8999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHHhhhhhc
Q psy9917 101 EAHPVDSLDASAARDVLSKAQSELSSAS---SETAKAEAQIAVEVAEALKIFVS 151 (219)
Q Consensus 101 ~a~~~~~Id~~~~~~~~e~a~~~l~~~~---~~~~~~~~~~~l~~~~~~l~~Vs 151 (219)
.+.+.++||+.+++..+++|+++|++.. ++.++.+++.+|+++.+++.+..
T Consensus 80 ~A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~arl~~~~ 133 (138)
T 2rq6_A 80 GAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAG 133 (138)
T ss_dssp CEECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876 77889999999999999988753
No 4
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=233.53 Aligned_cols=130 Identities=37% Similarity=0.586 Sum_probs=114.2
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+. +|+|+.|+++|||++|.+||.|+|+
T Consensus 30 ~~l~l~IVtPe~~~~~~~~v~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~-~g~~~~~aV~gGf~eV~~~n~VtIl 108 (160)
T 2xok_H 30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-GSNSKKFFISGGFATVQPDSQLCVT 108 (160)
T ss_dssp ----CCCBCSSCBCCC--CCSEEEEECSSSEEEEESSCCCCEEEECSSCEEECS-SSCCEEECCCCEEEEECTTSCEEEE
T ss_pred CeEEEEEEcCCeeEEcCCcEEEEEEECCccCeEecCCCccceeEecceEEEEEE-CCEEEEEEEcCeEEEEeCCCeEEEE
Confidence 579999999999999953799999999999999999999999999999999987 8889999999999999876689999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
++.+.+.++||..+++..+++|+++|++. ++.++.+++.+|++++..+.++
T Consensus 109 a~~A~~~~dID~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al 159 (160)
T 2xok_H 109 AIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVL 159 (160)
T ss_dssp ESCC-CCTTTC-CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC-
T ss_pred eeeeEehhhCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 8899999999999999887654
No 5
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=100.00 E-value=2.4e-35 Score=240.41 Aligned_cols=132 Identities=54% Similarity=0.783 Sum_probs=81.7
Q ss_pred cccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEEe
Q psy9917 19 DQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 19 ~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+|+|+.|+++|||++|.+||.|+||
T Consensus 36 ~~~~l~IVtPe~~~~~~~~V~~V~~p~~~Ge~GILp~H~Plit~L~~G~v~i~~~~g~~~~~~V~gGf~eV~~~n~VtIl 115 (168)
T 2w6j_H 36 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLL 115 (168)
T ss_dssp ---CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CEE
T ss_pred CeEEEEEEcCCeeEEcCCcEEEEEEeCCccCccccCCCcceEeEecceEEEEEECCCcEEEEEEeCCeEEEecCCeEEEE
Confidence 57999999999999995379999999999999999999999999999999999778889999999999999875589999
Q ss_pred eCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 99 AEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 99 a~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
++++.+.++||..+++..+++|+++|++..++.++.++++.+++++.++.++
T Consensus 116 a~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~ 167 (168)
T 2w6j_H 116 AEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167 (168)
T ss_dssp BSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC-----
T ss_pred ecccCccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988764
No 6
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=100.00 E-value=4.7e-35 Score=233.90 Aligned_cols=133 Identities=53% Similarity=0.778 Sum_probs=81.8
Q ss_pred ccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEEE
Q psy9917 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQI 97 (219)
Q Consensus 18 a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~I 97 (219)
+++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|+||+++|+..+|+|+.|+++|||++|.+||.|+|
T Consensus 13 ~~~l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~~~~g~~~~~~v~gGf~eV~~~~~VtI 92 (146)
T 2ck3_H 13 PGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQL 92 (146)
T ss_dssp ----CCCEECSSCEEEC-----CCBCCC-----------------CCSBCCBC----------CBCSBC---------CE
T ss_pred CCeEEEEEEcCCeeEEcCCcEEEEEEECCccCeeccCCCcceEeEecceEEEEEECCCcEEEEEEeCCEEEEeCCCEEEE
Confidence 36799999999999999537999999999999999999999999999999999977888999999999999987668999
Q ss_pred eeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9917 98 IAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFV 150 (219)
Q Consensus 98 la~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~V 150 (219)
|++.+.+.++||..+++..+++|+++|++..++.++.+++..|++++.++.++
T Consensus 93 la~~A~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~ 145 (146)
T 2ck3_H 93 LAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 145 (146)
T ss_dssp EBSSBCCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC-----
T ss_pred EeceeEehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988765
No 7
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=99.98 E-value=1.4e-34 Score=228.46 Aligned_cols=131 Identities=19% Similarity=0.312 Sum_probs=122.9
Q ss_pred cccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceEE
Q psy9917 17 YADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQ 96 (219)
Q Consensus 17 ~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v~ 96 (219)
|++ |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+. ++.|+.|+++|||++|.+| .|+
T Consensus 1 Ma~-~~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~-~~~~~~~~v~gGf~ev~~~-~vt 76 (135)
T 2qe7_H 1 MAT-VQVDIVTPERKVFQG-EADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQ-GDKETLIAVSGGFLEVRPD-KVN 76 (135)
T ss_dssp CCC-CEEEEBCSSCBCCCS-CCSCEEECBSSSCEEECSCCCCCCCCBCSSCCCBCT-TSCCBCCBCCSCCEEECSS-EEE
T ss_pred CCc-eEEEEEcCCceEEec-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEE-CCeEEEEEEcCcEEEEECC-EEE
Confidence 554 999999999999998 999999999999999999999999999999999986 4567899999999999987 899
Q ss_pred EeeCcccCCCCCCHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhhhhc
Q psy9917 97 IIAEEAHPVDSLDASAARDVLSKAQSELSSA-SSETAKAEAQIAVEVAEALKIFVS 151 (219)
Q Consensus 97 Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~-~~~~~~~~~~~~l~~~~~~l~~Vs 151 (219)
|+++.+.+.++||+.+++..+++|+++|++. .++.++.+++.+|+++.+++....
T Consensus 77 Ila~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~rl~~~~ 132 (135)
T 2qe7_H 77 ILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEVRLQVAN 132 (135)
T ss_dssp ECCSSCBCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTHHHHTTS
T ss_pred EEEeeeEEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988 888899999999999999988753
No 8
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*
Probab=99.98 E-value=9.9e-34 Score=224.32 Aligned_cols=132 Identities=36% Similarity=0.565 Sum_probs=112.7
Q ss_pred ccccccEEEEEecCceeeecCceeEEEEecCceeeeecCCCccceecccCeEEEEEEcCCeEEEEEEecCeEEEecCceE
Q psy9917 16 GYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSV 95 (219)
Q Consensus 16 ~~a~~l~l~IvTP~~~~~~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~l~i~~~~g~~~~~~vsgG~~~V~~~g~v 95 (219)
+..++|+|+|+||++.+|++.+|++|++||.+|+|||||||+|+|+.|.||+++|+ .+|+|++|+++|||++|.+|+.|
T Consensus 5 ~~~~~l~l~IvtP~~~~~~~~~v~~V~~p~~~Ge~GILp~H~P~it~L~~G~v~i~-~~g~~~~~~V~gGf~eV~~~~~v 83 (138)
T 3oee_H 5 AASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVM-EGSNSKKFFISGGFATVQPDSQL 83 (138)
T ss_dssp ------CEEEECSSCBCCC--CCSCEECCCSSSCCEECTTCCCCEEEECSEEEEEC-SSSCCEEEEECCEEEEECTTSCE
T ss_pred cCCCcEEEEEEcCCeeEEcCCcEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-ECCeEEEEEEcCeEEEEeCCCEE
Confidence 34578999999999999995479999999999999999999999999999999998 68889999999999999986689
Q ss_pred EEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhh
Q psy9917 96 QIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIF 149 (219)
Q Consensus 96 ~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 149 (219)
+|+++.+.+.++||..+++..+++|+++|++ .+++.+++++++|+..+....+
T Consensus 84 ~Ila~~A~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~a 136 (138)
T 3oee_H 84 CVTAIEAFPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSV 136 (138)
T ss_dssp EEECSCC-CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC
T ss_pred EEEeccccchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 5556788888988888766544
No 9
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=99.82 E-value=6e-22 Score=157.98 Aligned_cols=106 Identities=42% Similarity=0.486 Sum_probs=62.6
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......++|+|||++|+||+.||||+++|
T Consensus 41 ~~Ge~GILp~H~P~it~L~~G~v~i~~~-----------------------~g~~~~~~v~gGf~eV~~~~~VtIla~~A 97 (146)
T 2ck3_H 41 QTGAFGILAAHVPTLQVLRPGLVVVHAE-----------------------DGTTSKYFVSSGSVTVNADSSVQLLAEEA 97 (146)
T ss_dssp -----------------CCSBCCBC---------------------------------CBCSBC---------CEEBSSB
T ss_pred CccCeeccCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCCEEEEeCCCEEEEEecee
Confidence 5789999999999999999999987643 24556789999999999985599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
++.+|||.++|++++++|+++|.+..++.++.+|+++|+.++++..|++
T Consensus 98 ~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 146 (146)
T 2ck3_H 98 VTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 146 (146)
T ss_dssp CCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred EehhhCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988899999999999999999999874
No 10
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-21 Score=158.02 Aligned_cols=104 Identities=28% Similarity=0.404 Sum_probs=89.5
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++...+ .....++|+|||++|+||+.|||||++|
T Consensus 57 ~~Ge~GILp~H~Plit~L~~G~v~i~~~------------------------g~~~~~aV~gGf~eV~~~n~VtIla~~A 112 (160)
T 2xok_H 57 KSGRIGVLANHVPTVEQLLPGVVEVMEG------------------------SNSKKFFISGGFATVQPDSQLCVTAIEA 112 (160)
T ss_dssp SSSEEEEESSCCCCEEEECSSCEEECSS------------------------SCCEEECCCCEEEEECTTSCEEEEESCC
T ss_pred CccCeEecCCCccceeEecceEEEEEEC------------------------CEEEEEEEcCeEEEEeCCCeEEEEeeee
Confidence 3789999999999999999998886431 3456789999999999984599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
++.+|||.++|++++++|+++|+++ ++.++.+|+++|+.+++|++|++
T Consensus 113 ~~~~dID~~~A~~a~~~Ae~~l~~~-~~~d~~~A~~~L~~a~~l~~al~ 160 (160)
T 2xok_H 113 FPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQSVLK 160 (160)
T ss_dssp -CCTTTC-CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHHCC--
T ss_pred EehhhCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988 99999999999999999999974
No 11
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Probab=99.80 E-value=2.1e-21 Score=158.09 Aligned_cols=106 Identities=42% Similarity=0.486 Sum_probs=62.6
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......++|+|||++|+||+.||||+++|
T Consensus 63 ~~Ge~GILp~H~Plit~L~~G~v~i~~~-----------------------~g~~~~~~V~gGf~eV~~~n~VtIla~~A 119 (168)
T 2w6j_H 63 QTGAFGILAAHVPTLQVLRPGLVVVHAE-----------------------DGTTSKYFVSSGSVTVNADSSVQLLAEEA 119 (168)
T ss_dssp -----------------CCSBCCBC---------------------------------CBCSBC---------CEEBSSB
T ss_pred CccCccccCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCCeEEEecCCeEEEEeccc
Confidence 4789999999999999999999987643 24556789999999999963599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
++.+|||.++|++++++|+++|++..++.++.+|+++|+.++++..|++
T Consensus 120 ~~~~dID~~~A~~a~~~Ae~~l~~~~~~~~~~~A~~~l~~~~a~~~a~~ 168 (168)
T 2w6j_H 120 VTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKALE 168 (168)
T ss_dssp CCSSSCCCSSHHHHHHHHHHHHSSCCCSSSSHHHHHHHHHHHC------
T ss_pred CccccCCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988899999999999999999999874
No 12
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=99.79 E-value=2.8e-20 Score=146.99 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=89.3
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... ......++|+|||++|+|| .|||||++|
T Consensus 28 ~~Ge~GILp~H~p~it~L~~G~v~i~~~-----------------------~g~~~~~~v~gGf~ev~~~-~vtIla~~A 83 (138)
T 1aqt_A 28 SEGELGIYPGHAPLLTAIKPGMIRIVKQ-----------------------HGHEEFIYLSGGILEVQPG-NVTVLADTA 83 (138)
T ss_dssp SSSEEEECTTCCCEEEEECSEEEEEEET-----------------------TTEEEEEEESSEEEEEETT-EEEEEESSE
T ss_pred CcCCeEecCCCcceEeEecceEEEEEEC-----------------------CCcEEEEEEeCcEEEEECC-EEEEEEeeE
Confidence 5789999999999999999999887532 1345678999999999999 599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 214 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l 214 (219)
++.+|||.++|++++++|+++|+++.++.++.+|+++|....+-
T Consensus 84 ~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~ar 127 (138)
T 1aqt_A 84 IRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQ 127 (138)
T ss_dssp EEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred EEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999998876653
No 13
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=99.76 E-value=6.1e-20 Score=145.07 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=90.7
Q ss_pred ecCeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcC
Q psy9917 83 SSGTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVND 159 (219)
Q Consensus 83 sgG~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~ 159 (219)
+|.+-.|. .+|+++||++|+|+++.|++|.++.... .....+||+|||++|+|
T Consensus 16 ~~~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~------------------------~~~~~~~v~gGf~ev~~ 71 (138)
T 2rq6_A 16 DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQD------------------------REWVAIALMGGFAEVEN 71 (138)
T ss_dssp EEEESEEEECCTTSCEEEESSCCSEEEEECSEEEEEESS------------------------SCEEEEEECSEEEEECS
T ss_pred eeeEEEEEEECCcCCeEEcCCCcceEeEeccEEEEEEEC------------------------CeEEEEEEcCcEEEEEC
Confidence 44444443 5789999999999999999999886431 34567899999999999
Q ss_pred CCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHH
Q psy9917 160 DSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS---SETAKAEAQIAVEVAEAL 214 (219)
Q Consensus 160 ~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~---~~~~~~~a~~~l~~~~~l 214 (219)
|. |||||++|++.+|||.++|++++++|+++|+++. ++.++.+|+++|....+-
T Consensus 72 ~~-vtIla~~A~~~~dID~~~a~~a~~~Ae~~l~~~~~~~~~~~~~~a~~aL~rA~ar 128 (138)
T 2rq6_A 72 NE-VTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARAR 128 (138)
T ss_dssp SC-EEEEESCEECSTTCCHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred CE-EEEEEeeEEEhhhCCHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHH
Confidence 95 9999999999999999999999999999998766 778899999988876653
No 14
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=99.76 E-value=5.5e-20 Score=144.47 Aligned_cols=106 Identities=25% Similarity=0.286 Sum_probs=91.8
Q ss_pred ecCeEEEe---cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcC
Q psy9917 83 SSGTITVN---DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVND 159 (219)
Q Consensus 83 sgG~~~V~---~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~ 159 (219)
+|.+-.|. .+|+++||++|+|+++.|++|.++.. . ......++|+|||++|+|
T Consensus 17 ~~~v~~V~~p~~~G~~GILp~H~p~it~L~~G~v~i~-~-----------------------~~~~~~~~v~gGf~ev~~ 72 (133)
T 2e5y_A 17 EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLK-K-----------------------GGKTQYIAVSGGFLEVRP 72 (133)
T ss_dssp EEEESEEEEEETTEEEEECTTCCCEEEEEEEEEEEEE-E-----------------------TTEEEEEEEEEEEEEEET
T ss_pred eceEEEEEEECCcCCeEecCCCcceEeEecceEEEEE-E-----------------------CCeEEEEEEcCeEEEEEC
Confidence 34444443 57899999999999999999998875 2 134567899999999999
Q ss_pred CCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy9917 160 DSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 160 ~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~ 213 (219)
| .|||||++|++.+|||.++|++++++|+++|+++.++.++.+|+++|....+
T Consensus 73 ~-~vtIla~~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~~ 125 (133)
T 2e5y_A 73 D-KVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMN 125 (133)
T ss_dssp T-EEEEEESSEEEGGGCCHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH
T ss_pred C-EEEEEEeEEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHH
Confidence 9 5999999999999999999999999999999988888999999999887654
No 15
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*
Probab=99.75 E-value=1.5e-21 Score=154.26 Aligned_cols=104 Identities=29% Similarity=0.406 Sum_probs=89.9
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.. . ......++|+|||++|+||+.||||+++|
T Consensus 35 ~~Ge~GILp~H~P~it~L~~G~v~i~-~-----------------------~g~~~~~~V~gGf~eV~~~~~v~Ila~~A 90 (138)
T 3oee_H 35 KSGRIGVLANHVPTVEQLLPGVVEVM-E-----------------------GSNSKKFFISGGFATVQPDSQLCVTAIEA 90 (138)
T ss_dssp SSSCCEECTTCCCCEEEECSEEEEEC-S-----------------------SSCCEEEEECCEEEEECTTSCEEEECSCC
T ss_pred CcCCeEecCCCcceEeEecceEEEEE-E-----------------------CCeEEEEEEcCeEEEEeCCCEEEEEeccc
Confidence 57899999999999999999998764 2 14566789999999999984599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhhC
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~~l~~~~~ 219 (219)
++.+|||.++|++++++|+++|++ .++.++++|+++|+.+++|.+||.
T Consensus 91 ~~~~eiD~~~A~~a~e~Ae~~l~~-~~~~~~a~A~~~l~~~~~l~~al~ 138 (138)
T 3oee_H 91 FPLESFSQENIKNLLAEAKKNVSS-SDAREAAEAAIQVEVLENLQSVLK 138 (138)
T ss_dssp -CCSSCC-CCSSSSTTHHHHHTSC-SSSSGGGTTTHHHHHHHTTSCC--
T ss_pred cchhhCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999976 566779999999999999999874
No 16
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=99.72 E-value=6.2e-20 Score=144.53 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=86.7
Q ss_pred cCceEEEeeCcccCCCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceEEEcCCCcEEEEeccc
Q psy9917 91 DDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEA 170 (219)
Q Consensus 91 ~~g~v~Ila~~a~~~~~Id~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~eV~~~~~vtvla~~A 170 (219)
.+|+++||++|+|+++.|++|.++.... .....++|+|||++|+|| .|||||++|
T Consensus 28 ~~Ge~GILp~H~p~it~L~~G~v~i~~~------------------------~~~~~~~v~gGf~ev~~~-~vtIla~~A 82 (135)
T 2qe7_H 28 VEGELGVMAGHIPLVTPLKTAPVRIKQG------------------------DKETLIAVSGGFLEVRPD-KVNILADTA 82 (135)
T ss_dssp SSSCEEECSCCCCCCCCBCSSCCCBCTT------------------------SCCBCCBCCSCCEEECSS-EEEECCSSC
T ss_pred CcCCeEecCCCcceEeEecceEEEEEEC------------------------CeEEEEEEcCcEEEEECC-EEEEEEeee
Confidence 4789999999999999999999887532 235678999999999999 599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q psy9917 171 HPVDSLDASAARDVLSKAQSELSSA-SSETAKAEAQIAVEVAEA 213 (219)
Q Consensus 171 ~~~~~id~~~a~~~~~~A~~~l~~~-~~~~~~~~a~~~l~~~~~ 213 (219)
++.+|||.++|++++++|+++|+++ .++.++.+|+++|....+
T Consensus 83 ~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~~a~~al~rA~~ 126 (135)
T 2qe7_H 83 ELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRALERAEV 126 (135)
T ss_dssp BCTTTSCHHHHHHHHHTTTTTTTTCCSSSSSTTTSTTTHHHHTH
T ss_pred EEhhhCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 788888888888776554
No 17
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=91.86 E-value=0.44 Score=35.54 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=59.3
Q ss_pred EEEEEecCceeeecCceeEEEEecCce---eee-ecCCC--------ccceecccCeEEEEEEcCC-eEEEEEEecCeEE
Q psy9917 22 DFTLASGNKVFYTNQNVKQVDVPSFSG---AFG-ILPNH--------VPTLAILKPGVITVYETEG-VSQKIFVSSGTIT 88 (219)
Q Consensus 22 ~l~IvTP~~~~~~~~~v~~V~~~t~~G---~~g-IL~~H--------~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~ 88 (219)
.+.|+.--.+.|+| +|.+..+-..+| .+| ++||- .|-+..+..|.++++.++. +|+ -+-.|....
T Consensus 11 nVtv~kkaNvYFdG-kV~S~~~~~~dG~~kTlGVm~PGe~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~-~~~aGesF~ 88 (111)
T 3hqx_A 11 HVTVIKKSNVYFGG-LCISHTVQFEDGTKKTLGVILPTEQPLTFETHVPERMEIISGECRVKIADSTESE-LFRAGQSFY 88 (111)
T ss_dssp SCEECSSCEEETTT-TEEEEEEECTTSCEEEEEEECCCSSCEEEECSSCEEEEEEESEEEEEETTCSSCE-EEETTCEEE
T ss_pred CEEEEEEeEEEeCC-eEEEEEEEeCCCCEEEEEEEeccccceEEcCCCcEEEEEEEeEEEEEcCCcccCE-EeCCCCEEE
Confidence 46788888889999 999999999998 477 67886 6778888899999998753 565 455677777
Q ss_pred EecCceEEEeeC
Q psy9917 89 VNDDSSVQIIAE 100 (219)
Q Consensus 89 V~~~g~v~Ila~ 100 (219)
|-.|..+.|-+.
T Consensus 89 VpanssF~lkv~ 100 (111)
T 3hqx_A 89 VPGNSLFKIETD 100 (111)
T ss_dssp ECTTCEEEEECS
T ss_pred ECCCCcEEEEEC
Confidence 776656766554
No 18
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=86.75 E-value=2.5 Score=31.19 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=53.9
Q ss_pred EEEEEecCceeeecCceeEEEEecCcee---eee-cCC------CccceecccCeEEEEEEcC-CeEEEEEEecCeEEEe
Q psy9917 22 DFTLASGNKVFYTNQNVKQVDVPSFSGA---FGI-LPN------HVPTLAILKPGVITVYETE-GVSQKIFVSSGTITVN 90 (219)
Q Consensus 22 ~l~IvTP~~~~~~~~~v~~V~~~t~~G~---~gI-L~~------H~p~it~L~~G~l~i~~~~-g~~~~~~vsgG~~~V~ 90 (219)
.+.|+.--.+.|+| +|.+..+-..+|. +|| +|| +.|-+..+..|.++++.++ .+|+ -+-.|....|-
T Consensus 10 ~vtv~kkaNvYFDG-kV~S~~~~~~dG~~kTlGVm~PGeY~F~T~~~E~MevvsG~l~V~LpG~~eW~-~~~aGesF~Vp 87 (106)
T 3eo6_A 10 ATALGKSSRISLDG-RRSERSVILADGSMHSLTLLHPGVYTLSSEVAETIRVLSGMAYYHAEGANDVQ-ELHAGDSMVIP 87 (106)
T ss_dssp EEEEESCCEEETTT-TEEEEEEEETTSCEEEEEEECSEEEEECCSSCEEEEEEEEEEEEECTTCSSCE-EEETTCEEEEC
T ss_pred ceEEEEEeeEEeCC-eEEEEEEEeCCCCeEEEEEEeeeEEEecCCCcEEEEEEEeEEEEECCCCccCE-EECCCCEEEEC
Confidence 36677777889999 9999999988874 674 454 5677778888999998765 2464 44556666666
Q ss_pred cCceEEEee
Q psy9917 91 DDSSVQIIA 99 (219)
Q Consensus 91 ~~g~v~Ila 99 (219)
.|..+.|-+
T Consensus 88 anssF~lkv 96 (106)
T 3eo6_A 88 ANQSYRLEV 96 (106)
T ss_dssp SSSCEEEEE
T ss_pred CCCcEEEEE
Confidence 554555543
No 19
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=65.22 E-value=16 Score=26.18 Aligned_cols=65 Identities=20% Similarity=0.393 Sum_probs=41.7
Q ss_pred eeeecCceeEEEEecCcee---eee-cCC------CccceecccCeEEEEEEcCC-eEEEEEEecCeEEEecCceEEEe
Q psy9917 31 VFYTNQNVKQVDVPSFSGA---FGI-LPN------HVPTLAILKPGVITVYETEG-VSQKIFVSSGTITVNDDSSVQII 98 (219)
Q Consensus 31 ~~~~~~~v~~V~~~t~~G~---~gI-L~~------H~p~it~L~~G~l~i~~~~g-~~~~~~vsgG~~~V~~~g~v~Il 98 (219)
+.|+| +|.++.+-.. |. +|| +|| +.|-+..+..|.++++.++. +|+ -+-.|....|-.|..+.|-
T Consensus 7 vYFdG-kv~S~~~~~~-G~~~TvGVm~pGeytF~T~~~E~M~vvsG~~~V~lpg~~ew~-~~~aGesF~Vpans~F~l~ 82 (94)
T 2oyz_A 7 SYFAG-GVKSLGFNQH-GQDVSVGVMLPGEYTFGTQAPERMTVVKGALVVKRVGEADWT-TYSSGESFDVEGNSSFELQ 82 (94)
T ss_dssp EEGGG-TEEEEEEEET-TEEEEEEEECSEEEEEEESSCEEEEEEESEEEEEETTCSSCE-EEETTCEEEECSSEEEEEE
T ss_pred EEeCC-eEEEEEEEeC-CCCEEEEEEeceEEEEcCCCeEEEEEEEeEEEEEcCCCCcCE-EECCCCEEEECCCCEEEEE
Confidence 57898 9999998766 54 564 444 56667777778888877643 454 3445555555544445543
No 20
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=48.62 E-value=84 Score=25.49 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=43.0
Q ss_pred cceEEEcCCCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy9917 152 SGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAE 212 (219)
Q Consensus 152 gGf~eV~~~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~ 212 (219)
-+-+.|+.|. .||+.. .=|.+.++++.+.-+..+..+.++.++.+.|.+|..|+
T Consensus 142 a~~V~vtkd~-TtIv~G------~G~~~~I~~Rv~qIr~qie~t~S~ydkEKLqERLAKLs 195 (201)
T 3osx_A 142 AKRVVINKDT-TTIIDG------VGEEGAIAARVTQIRQQIEESTSDYDREKLQERVAKLA 195 (201)
T ss_dssp EEEEEECSSC-EEEEEE------CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCc-eEEecC------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 3456677874 666643 23788999999999999999999999999999988876
No 21
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=46.15 E-value=98 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=42.4
Q ss_pred ceEEEcCCCcEEEEecccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy9917 153 GTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAE 212 (219)
Q Consensus 153 Gf~eV~~~~~vtvla~~A~~~~~id~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~~~ 212 (219)
+-+.|+.|. .||+.. .=|.+..+++.+.-+..+..+.++.++.+.|.+|..|+
T Consensus 136 ~~v~vtkd~-T~iv~G------~g~~~~I~~Rv~qIr~~ie~t~s~ydkEKLqERlAkLs 188 (194)
T 3m6c_A 136 RRVVVSKDD-TVIVDG------GGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLA 188 (194)
T ss_dssp EEEEECSSC-EEEEEE------CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCc-eEEecC------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 445677774 666643 23788999999999999999999999999999988876
No 22
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=44.97 E-value=25 Score=28.64 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceE
Q psy9917 109 DASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTI 155 (219)
Q Consensus 109 d~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~ 155 (219)
++..++.+.+..+++++...++++|.+.+ .|+..++||.+
T Consensus 160 ~~~~I~~Rv~qIr~qie~t~S~ydkEKLq-------ERLAKLsGGVA 199 (201)
T 3osx_A 160 EEGAIAARVTQIRQQIEESTSDYDREKLQ-------ERVAKLAGGVK 199 (201)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHH-------HHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHcCCCc
Confidence 67889999999999999999988886654 45555678765
No 23
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=42.37 E-value=28 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhhhhccceE
Q psy9917 109 DASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALKIFVSSGTI 155 (219)
Q Consensus 109 d~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~l~~~~~~l~~VsgGf~ 155 (219)
++..++.+.+..+++++...++++|.+.+ .|+..++||.+
T Consensus 153 ~~~~I~~Rv~qIr~~ie~t~s~ydkEKLq-------ERlAkLsGGVA 192 (194)
T 3m6c_A 153 TAEAVANRAKHLRAEIDKSDSDWDREKLG-------ERLAKLAGGVA 192 (194)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHH-------HHHHHHHHHBC
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHcCCcE
Confidence 67889999999999999999988886654 45555677765
Done!