RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9917
(219 letters)
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 125 bits (316), Expect = 8e-37
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 1 MAARLVTSATRLARRGYAD------QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILP 54
+ S +A+R YA+ + A ++ Y+ V QV++P+ SG G+L
Sbjct: 6 IGKSASRSLNFVAKRSYAEAAAASSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLA 65
Query: 55 NHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAAR 114
NHVPT+ L PGV+ V E S+K F+S G TV DS + + A EA P++S +
Sbjct: 66 NHVPTVEQLLPGVVEVMEGSN-SKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIK 124
Query: 115 DVLSKAQSELSSASSETAKAEAQIAVEVAEALK 147
++L++A+ +SS+ AEA I VEV E L+
Sbjct: 125 NLLAEAKKNVSSS-DAREAAEAAIQVEVLENLQ 156
Score = 67.1 bits (164), Expect = 2e-14
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K F+S G TV DS + + A EA P++S +++L++A+ +SS+ AEA I
Sbjct: 89 KFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAI 147
Query: 207 AVEVAEALVAA 217
VEV E L +
Sbjct: 148 QVEVLENLQSV 158
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 123 bits (309), Expect = 1e-35
Identities = 75/158 (47%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 1 MAARLVTSATRLARRGYA------------DQMDFTLASGNKVFYTNQNVKQVDVPSFSG 48
+ R R YA QM FT AS +VF+ + NV+QVDVP+ +G
Sbjct: 6 LLRRPGLGRLVRQVRLYAEAAAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTG 65
Query: 49 AFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSL 108
AFGIL HVPTL +L+PG++ V+ +G + K FVSSG++TVN DSSVQ++AEEA +D L
Sbjct: 66 AFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDML 125
Query: 109 DASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
D AA+ L KAQSEL A+ E +AE QI +E EAL
Sbjct: 126 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEAL 163
Score = 66.9 bits (163), Expect = 4e-14
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG++TVN DSSVQ++AEEA +D LD AA+ L KAQSEL A+ E +AE QI
Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 155
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 156 RIEANEALVKA 166
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 119 bits (299), Expect = 2e-34
Identities = 73/139 (52%), Positives = 96/139 (69%)
Query: 8 SATRLARRGYADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGV 67
+A A QM FT AS +VF+ + NV+QVDVP+ +GAFGIL HVPTL +L+PG+
Sbjct: 3 AAAAQAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGL 62
Query: 68 ITVYETEGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSA 127
+ V+ +G + K FVSSG++TVN DSSVQ++AEEA +D LD AA+ L KAQSEL A
Sbjct: 63 VVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGA 122
Query: 128 SSETAKAEAQIAVEVAEAL 146
+ E +AE QI +E EAL
Sbjct: 123 ADEATRAEIQIRIEANEAL 141
Score = 64.5 bits (157), Expect = 1e-13
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K FVSSG++TVN DSSVQ++AEEA +D LD AA+ L KAQSEL A+ E +AE QI
Sbjct: 74 KYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQI 133
Query: 207 AVEVAEALVAA 217
+E EALV A
Sbjct: 134 RIEANEALVKA 144
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 117 bits (295), Expect = 5e-34
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
+ + A ++ Y+ V QV++P+ SG G+L NHVPT+ L PGV+ V E S
Sbjct: 7 SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVME-GSNS 65
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
+K F+S G TV DS + + A EA P++S +++L++A+ +SS+ AEA
Sbjct: 66 KKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAA 124
Query: 138 IAVEVAEALK 147
I VEV E L+
Sbjct: 125 IQVEVLENLQ 134
Score = 65.9 bits (161), Expect = 4e-14
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
K F+S G TV DS + + A EA P++S +++L++A+ +SS+ AEA I
Sbjct: 67 KFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSS-DAREAAEAAI 125
Query: 207 AVEVAEALVAA 217
VEV E L +
Sbjct: 126 QVEVLENLQSV 136
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 115 bits (291), Expect = 2e-33
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 18 ADQMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVS 77
+ S + + + V+++ V G GI P H P L +KPG+I + + G
Sbjct: 1 GSTYHLDVVSAEQQMF-SGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHE 59
Query: 78 QKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQ 137
+ I++S G + V +V ++A+ A LD + A + KA+ +SS+ + A+A
Sbjct: 60 EFIYLSGGILEVQPG-NVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQAS 118
Query: 138 IAVEVAEA 145
+ A A
Sbjct: 119 AELAKAIA 126
Score = 62.0 bits (151), Expect = 1e-12
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQI 206
I++S G + V + V ++A+ A LD + A + KA+ +SS+ + A+A
Sbjct: 61 FIYLSGGILEVQPGN-VTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASA 119
Query: 207 AVEVAEALVAAA 218
+ A A +
Sbjct: 120 ELAKAIAQLRVI 131
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 105 bits (263), Expect = 3e-29
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 20 QMDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQK 79
+ ++ + + Y +V+ V V + SG GILP H+P +A L+ + + G +Q
Sbjct: 3 TIHVSVVTPDGPVY-EDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKK-GGKTQY 60
Query: 80 IFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAEAQIA 139
I VS G + V D V I+A+ A + +D A+ +A+ L S + A++A
Sbjct: 61 IAVSGGFLEVRPD-KVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELA 119
Query: 140 VEVAEA 145
++ A
Sbjct: 120 LKRAMN 125
Score = 61.6 bits (150), Expect = 2e-12
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAKAE 203
+ I VS G + V D V I+A+ A + +D A+ +A+ L S +
Sbjct: 57 KTQYIAVSGGFLEVRPDK-VTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKR 115
Query: 204 AQIAVEVAEALVAAA 218
A++A++ A ++ A
Sbjct: 116 AELALKRAMNRLSVA 130
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 86.6 bits (215), Expect = 6e-22
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
M + + +K + + ++V +PS +G GIL NH P L L+ GV+ V + + I
Sbjct: 3 MTVRVIAPDKTVW-DAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQ-DREWVAI 60
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASS---ETAKAEAQ 137
+ G V ++ V I+ A D++D A+ + AQ+ L+ A + AK +A
Sbjct: 61 ALMGGFAEVENN-EVTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQAT 119
Query: 138 IAVEVAEA 145
A A A
Sbjct: 120 QAFRRARA 127
Score = 47.3 bits (113), Expect = 3e-07
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASS---ETA 200
E + I + G V ++ V I+ A D++D A+ + AQ+ L+ A + A
Sbjct: 56 EWVAIALMGGFAEVENNE-VTILVNGAERGDTIDLEKAKAEFAAAQAALAQAEQGESKQA 114
Query: 201 KAEAQIAVEVAEALVAAA 218
K +A A A A + AA
Sbjct: 115 KIQATQAFRRARARLQAA 132
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP}
Length = 135
Score = 83.5 bits (207), Expect = 7e-21
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 21 MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
+ + + + + V G G++ H+P + LK + + + + I
Sbjct: 4 VQVDIVTPERKVF-QGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDK-ETLI 61
Query: 81 FVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS-SETAKAEAQIA 139
VS G + V D V I+A+ A + +D A+ ++ ++ L ++ + A
Sbjct: 62 AVSGGFLEVRPD-KVNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKRA 120
Query: 140 VEVAEA 145
+E AE
Sbjct: 121 LERAEV 126
Score = 45.4 bits (108), Expect = 1e-06
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 147 KIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSAS-SETAKAEAQ 205
I VS G + V D V I+A+ A + +D A+ ++ ++ L ++ +
Sbjct: 60 LIAVSGGFLEVRPDK-VNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHK 118
Query: 206 IAVEVAEALVAAAS 219
A+E AE + A+
Sbjct: 119 RALERAEVRLQVAN 132
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 32.5 bits (74), Expect = 0.066
Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 25/158 (15%)
Query: 74 EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSELSSASSETAK 133
+G+ KI V G+ + S + +I EE ++ S +
Sbjct: 54 DGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQ 113
Query: 134 AEAQIAVEVAEA-LKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASA-----------A 181
+ E L+ +S + + I E+ SLDAS
Sbjct: 114 ISIPVKKEHIPGTLRFRLS---------PAARNILEKH----SLDASQGTATGPRGIFTK 160
Query: 182 RDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAAAS 219
D L Q + + +E+ A A A + + A S
Sbjct: 161 EDALKLVQLKQTGKITESRPTPAPTATPTAPSPLQATS 198
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.46
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 36 QNVKQVD--VPSFSGAFGILPNHVPTLAI 62
Q +K++ + ++ + P LAI
Sbjct: 20 QALKKLQASLKLYA------DDSAPALAI 42
Score = 28.0 bits (61), Expect = 1.7
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 92 DSSVQIIAEEAHPVDSLDAS 111
+S+++ A+++ P ++ A+
Sbjct: 26 QASLKLYADDSAPALAIKAT 45
Score = 28.0 bits (61), Expect = 1.7
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 160 DSSVQIIAEEAHPVDSLDAS 179
+S+++ A+++ P ++ A+
Sbjct: 26 QASLKLYADDSAPALAIKAT 45
Score = 27.2 bits (59), Expect = 2.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 114 RDVLSKAQSELSSASSETAKAEA-QIAVE 141
+ L K Q+ L + ++A A A + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 2.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 182 RDVLSKAQSELSSASSETAKAEA-QIAVE 209
+ L K Q+ L + ++A A A + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (62), Expect = 1.3
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 130 ETAKAEAQIAVEVAEA---LKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAA 181
ET KA + ++ ++ KI V G+ + S + +I EE + ++
Sbjct: 45 ETDKA--VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97
Score = 27.2 bits (61), Expect = 1.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 74 EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAA 113
+G+ KI V G+ + S + +I EE + ++
Sbjct: 58 DGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 27.8 bits (62), Expect = 1.6
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 130 ETAKAEAQIAVEVAEA---LKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLS 186
ET KA I EV E KI V GT V + + II E+ + + +V
Sbjct: 65 ETDKA--TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTD 122
Query: 187 KAQSE 191
Sbjct: 123 LKPQV 127
Score = 27.4 bits (61), Expect = 2.0
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 74 EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQSE 123
EG KI V GT V + + II E+ + + +V
Sbjct: 78 EGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQV 127
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 28.2 bits (62), Expect = 2.0
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 121 QSELSSASSETAKAEAQIAVEVAEALKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASA 180
Q L+S + E A A + ++ ++ E HP + +
Sbjct: 308 QHTLTSVTDELAVATEMVFRRQEMVTQL-----------QQELRNEEENTHPRERVQLLG 356
Query: 181 ARDVLSKAQSELSSASSETAKAEAQIAV 208
R VL +A L A AK +AQ +
Sbjct: 357 KRQVLQEALQGLQVALCSQAKLQAQQEL 384
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 25.4 bits (56), Expect = 7.6
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 74 EGVSQKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLSKAQS 122
E KI V+ GT V + + I + +++ + S
Sbjct: 58 ECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPS 106
Score = 25.0 bits (55), Expect = 9.9
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 130 ETAKAEAQIAVEVAEA---LKIFVSSGTITVNDDSSVQIIAEEAHPVDSLDASAARDVLS 186
ET KA + E E KI V+ GT V + + I + +++ +
Sbjct: 45 ETDKA--TVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAA 102
Query: 187 KAQS 190
S
Sbjct: 103 SGPS 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.120 0.301
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,039,481
Number of extensions: 180505
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 58
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.5 bits)