RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9917
         (219 letters)



>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 85

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 48/84 (57%), Positives = 66/84 (78%)

Query: 23  FTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFV 82
           FT AS  +VF+ + NV+QVDVP+ +GAFGIL  HVPTL +L+PG++ V+  +G + K FV
Sbjct: 2   FTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFV 61

Query: 83  SSGTITVNDDSSVQIIAEEAHPVD 106
           SSG++TVN DSSVQ++AEEA  +D
Sbjct: 62  SSGSVTVNADSSVQLLAEEAVTLD 85



 Score = 34.0 bits (78), Expect = 0.002
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 144 EALKIFVSSGTITVNDDSSVQIIAEEAHPVD 174
              K FVSSG++TVN DSSVQ++AEEA  +D
Sbjct: 55  TTSKYFVSSGSVTVNADSSVQLLAEEAVTLD 85


>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 65.9 bits (161), Expect = 4e-15
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 21  MDFTLASGNKVFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKI 80
               + S  +  ++   V+++ V    G  GI P H P L  +KPG+I + +  G  + I
Sbjct: 3   YHLDVVSAEQQMFSGL-VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFI 61

Query: 81  FVSSGTITVNDDSSVQIIAEEA 102
           ++S G + V    +V ++A+ A
Sbjct: 62  YLSGGILEVQPG-NVTVLADTA 82


>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase
           C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 44

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 23/42 (54%), Positives = 27/42 (64%)

Query: 176 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEALVAA 217
           LD  AA+  L KAQSEL  A+ E  +AE QI +E  EALV A
Sbjct: 2   LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKA 43



 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query: 108 LDASAARDVLSKAQSELSSASSETAKAEAQIAVEVAEAL 146
           LD  AA+  L KAQSEL  A+ E  +AE QI +E  EAL
Sbjct: 2   LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEAL 40


>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
           [TaxId: 554]}
          Length = 271

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 31  VFYTNQNVKQVDVPSFSGAFGILPNHVPTLAILKPGVITVYETEGVSQKIFVSSGTITVN 90
           V   N ++          A+G +  +      +  G     + EG   KI    G +  +
Sbjct: 41  VVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFH 100

Query: 91  DDSS 94
            D  
Sbjct: 101 ADGG 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.120    0.301 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,394
Number of extensions: 26376
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 13
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)