Query psy992
Match_columns 106
No_of_seqs 122 out of 593
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03015 Sterile: Male sterili 100.0 1.4E-29 3E-34 161.6 7.0 72 1-72 23-94 (94)
2 cd09071 FAR_C C-terminal domai 99.9 4.9E-27 1.1E-31 148.6 5.7 70 1-70 23-92 (92)
3 KOG1221|consensus 99.9 9.6E-27 2.1E-31 182.9 6.7 86 1-86 382-467 (467)
4 PLN02503 fatty acyl-CoA reduct 99.8 1.8E-20 3.8E-25 152.0 6.5 68 6-73 536-604 (605)
5 PLN02996 fatty acyl-CoA reduct 99.8 2.2E-20 4.9E-25 148.2 6.4 71 1-71 414-491 (491)
6 PTZ00374 dihydroxyacetone phos 93.4 0.05 1.1E-06 47.5 2.1 48 27-75 430-485 (1108)
7 PF05208 ALG3: ALG3 protein; 90.3 0.84 1.8E-05 35.8 5.5 53 47-99 20-99 (368)
8 KOG2762|consensus 88.7 0.95 2E-05 35.7 4.7 54 46-99 47-127 (429)
9 PF11084 DUF2621: Protein of u 81.4 5.8 0.00013 26.9 5.2 72 11-98 20-95 (141)
10 PF04272 Phospholamban: Phosph 77.2 7.6 0.00016 21.6 4.0 19 73-91 17-35 (52)
11 TIGR01294 P_lamban phospholamb 70.4 13 0.00028 20.7 3.9 20 73-92 17-36 (52)
12 COG3945 Uncharacterized conser 53.7 14 0.00029 26.5 2.5 37 51-87 115-151 (189)
13 PF07377 DUF1493: Protein of u 46.3 9.3 0.0002 24.6 0.7 16 43-58 53-68 (111)
14 COG4068 Uncharacterized protei 34.9 93 0.002 18.3 3.6 24 76-99 32-55 (64)
15 COG4479 Uncharacterized protei 33.4 17 0.00038 22.0 0.4 32 27-60 38-71 (74)
16 PF06889 DUF1266: Protein of u 32.5 1.1E+02 0.0024 20.3 4.3 23 53-75 123-145 (172)
17 PF09889 DUF2116: Uncharacteri 30.7 1.1E+02 0.0025 17.7 3.9 18 77-94 28-45 (59)
18 PF05182 Fip1: Fip1 motif; In 28.5 28 0.0006 19.2 0.6 22 40-61 18-40 (45)
19 PF03195 DUF260: Protein of un 27.9 27 0.00058 22.4 0.6 31 25-58 37-67 (101)
20 PF15031 DUF4528: Domain of un 27.2 8.7 0.00019 25.5 -1.7 64 43-106 38-101 (126)
21 PF05117 DUF695: Family of unk 22.6 94 0.002 20.3 2.5 40 21-60 90-134 (136)
22 PF08452 DNAP_B_exo_N: DNA pol 21.9 27 0.00059 16.3 -0.2 10 47-56 1-10 (22)
23 PF05418 Apo-VLDL-II: Apovitel 20.7 1E+02 0.0022 18.9 2.2 31 61-91 45-75 (82)
No 1
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=99.96 E-value=1.4e-29 Score=161.58 Aligned_cols=72 Identities=39% Similarity=0.850 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHhhhhhhhcCeeEEecccHHHHHhcCCccCccceeccCCCCCHHHHHHHHHHHHHHHhhcC
Q psy992 1 LSSVYTKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLVHD 72 (106)
Q Consensus 1 l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Gir~yllke 72 (106)
|+|+++|+.+++++++||+++||+|+|+|+.+|++.|||+|++.|+||+++|||++|+.++++|+|+|++||
T Consensus 23 ~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~~~idW~~Y~~~~~~G~rkyllke 94 (94)
T PF03015_consen 23 MVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDIRSIDWEEYFRNYIPGIRKYLLKE 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998
No 2
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=99.94 E-value=4.9e-27 Score=148.62 Aligned_cols=70 Identities=43% Similarity=0.862 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHhhhhhhhcCeeEEecccHHHHHhcCCccCccceeccCCCCCHHHHHHHHHHHHHHHhh
Q psy992 1 LSSVYTKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLV 70 (106)
Q Consensus 1 l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Gir~yll 70 (106)
++|+++|+.+++++++|||++||+|+++|+++|++.|||+||+.|+||+++|||++|+.++++|+|+|++
T Consensus 23 ~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~~~idW~~Y~~~~~~G~r~yll 92 (92)
T cd09071 23 LLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFENYIPGLRKYLL 92 (92)
T ss_pred HHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG1221|consensus
Probab=99.93 E-value=9.6e-27 Score=182.92 Aligned_cols=86 Identities=41% Similarity=0.685 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHhhhhhhhcCeeEEecccHHHHHhcCCccCccceeccCCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q psy992 1 LSSVYTKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAA 80 (106)
Q Consensus 1 l~k~~~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Gir~yllke~~~~l~~a 80 (106)
++|+|+|+++..++++||++++|+|+++|+.+|++.||++|+++|+||++++||++|+.+|+.|+|+|++||+++++|+|
T Consensus 382 ~~k~~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~~~ldW~ey~~~~i~G~r~~llKe~~e~l~~~ 461 (467)
T KOG1221|consen 382 LVKLYRKIHKLVKLLEPFSLFKWIFDNKNTEKLREKMSEEDKRLFNFDMKQLDWEEYFNRHLLGLRKYLLKESPESLPQA 461 (467)
T ss_pred hhHHHHHHHHHHHhhhhheeceEEecCccHHHHHHhCCHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy992 81 RRKWQK 86 (106)
Q Consensus 81 r~~~~~ 86 (106)
|++++|
T Consensus 462 r~~~kr 467 (467)
T KOG1221|consen 462 RKRLKR 467 (467)
T ss_pred HHhhcC
Confidence 999874
No 4
>PLN02503 fatty acyl-CoA reductase 2
Probab=99.82 E-value=1.8e-20 Score=151.97 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=64.8
Q ss_pred HHHHHHHhhhhhhhcCeeEEecccHHHHHhcCCccCccceeccCCCCCHHHHHHH-HHHHHHHHhhcCC
Q psy992 6 TKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEA-LCLGLRLYLVHDD 73 (106)
Q Consensus 6 ~ki~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~-~~~Gir~yllke~ 73 (106)
+++.+++++++|||+++|.|+|+|+++|++.|||+||+.|+||+++|||++|+.+ |++|+|+|++|+.
T Consensus 536 ~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~~~idW~~Y~~~~~i~G~rky~lk~~ 604 (605)
T PLN02503 536 EQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLRRHVMKGR 604 (605)
T ss_pred HHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCcCCCCHHHHHHHhhhhHHHHHHhccC
Confidence 3566699999999999999999999999999999999999999999999999997 9999999999985
No 5
>PLN02996 fatty acyl-CoA reductase
Probab=99.81 E-value=2.2e-20 Score=148.16 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=67.2
Q ss_pred ChhHHHHH---HHHHhhhhhhhcCeeEEecccHHHHHhcCCccC---ccceeccCCCCCHHHHHHH-HHHHHHHHhhc
Q psy992 1 LSSVYTKL---GKVASTLEYFVDRKWNWSNENVQALWDQLSPED---QEMFFFDMGQLDWEYHAEA-LCLGLRLYLVH 71 (106)
Q Consensus 1 l~k~~~ki---~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D---~~~F~fD~~~idW~~Y~~~-~~~Gir~yllk 71 (106)
|+|+++|+ ++++++++|||+++|.|+|+|+.+|++.||++| |+.|+||++++||++|+.+ |++|+|+|++|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~~~~~w~~y~~~~~~~g~~~y~~k 491 (491)
T PLN02996 414 YTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDPKSIDWEDYMTNVHIPGLVKYVLK 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCcccCCHHHHHHHhhHHHHHHHhcC
Confidence 46899999 667999999999999999999999999999955 9999999999999999999 99999999986
No 6
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=93.40 E-value=0.05 Score=47.48 Aligned_cols=48 Identities=10% Similarity=0.301 Sum_probs=35.1
Q ss_pred cccHHHHHhcCCccCccc---e-eccCCCCCHHHHHHHHH----HHHHHHhhcCCCC
Q psy992 27 NENVQALWDQLSPEDQEM---F-FFDMGQLDWEYHAEALC----LGLRLYLVHDDLT 75 (106)
Q Consensus 27 ~~n~~~L~~~ls~~D~~~---F-~fD~~~idW~~Y~~~~~----~Gir~yllke~~~ 75 (106)
..=.+.|...++. |... . .+|..+|||+.|+..+| .|+.+|++||+..
T Consensus 430 ~~~y~~ll~~~~~-~~~~~~~~~~~~~~~i~W~~y~~~~~~~~l~~l~~~v~~~~~~ 485 (1108)
T PTZ00374 430 VALYHSLLRRVTS-DATLRPLHPYIALVEVDWDAYVKVIAQAVLEHLARQIFRSPFA 485 (1108)
T ss_pred HHHHHHHHHHHhh-cccccchHhhhHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334556655553 2222 2 36999999999999999 9999999999763
No 7
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=90.26 E-value=0.84 Score=35.84 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=41.2
Q ss_pred ccCCCCCHHHHHHH---HHHHHHHH------------------------hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy992 47 FDMGQLDWEYHAEA---LCLGLRLY------------------------LVHDDLTSLPAARRKWQKLYIAHCILRAVAV 99 (106)
Q Consensus 47 fD~~~idW~~Y~~~---~~~Gir~y------------------------llke~~~~l~~ar~~~~~l~~~~~~~~~~~~ 99 (106)
.-..+|||+.|+++ +..|-+.| -+-+..+++..|+....-++++..++...++
T Consensus 20 VpYTEIDw~aYMqqv~~~~~Ge~DYs~i~GdTGPlVYPAGfVyiY~~Ly~lT~~G~~I~~aQ~iF~~lyl~t~~~v~~~Y 99 (368)
T PF05208_consen 20 VPYTEIDWKAYMQQVEGFLNGERDYSKIKGDTGPLVYPAGFVYIYSFLYYLTDGGENIRLAQYIFAGLYLATLALVFRIY 99 (368)
T ss_pred ccCccccHHHHHHHHHHHHcCcccHHHhcCCCCCccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999988 78899988 2234467888888888888888877766555
No 8
>KOG2762|consensus
Probab=88.74 E-value=0.95 Score=35.72 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred eccCCCCCHHHHHHH---HHHHHHHH------------------------hhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy992 46 FFDMGQLDWEYHAEA---LCLGLRLY------------------------LVHDDLTSLPAARRKWQKLYIAHCILRAVA 98 (106)
Q Consensus 46 ~fD~~~idW~~Y~~~---~~~Gir~y------------------------llke~~~~l~~ar~~~~~l~~~~~~~~~~~ 98 (106)
.....+|||..|+++ ++-|.+.| -+-+...++..|.-...-+|++...+...+
T Consensus 47 kV~YTEIDw~AYM~qve~fl~G~~dY~ql~GdTGPLVYPAGhv~iy~~ly~lTs~g~nv~~aQ~iF~~lYl~tLalv~~i 126 (429)
T KOG2762|consen 47 KVPYTEIDWKAYMEQVEGFLNGELDYSQLVGDTGPLVYPAGHVYIYSLLYYLTSGGTNVRRAQYIFAGLYLLTLALVLRI 126 (429)
T ss_pred ecCcceecHHHHHHHHHHHHhcccchhhhcCCCCCccccchHHHHHHHHHHHHcCCCeeehHHHHHHHHHHHHHHHHHHH
Confidence 456789999999987 67899888 344556778888888888888876665555
Q ss_pred H
Q psy992 99 V 99 (106)
Q Consensus 99 ~ 99 (106)
+
T Consensus 127 y 127 (429)
T KOG2762|consen 127 Y 127 (429)
T ss_pred H
Confidence 4
No 9
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=81.41 E-value=5.8 Score=26.94 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHhhhhhhhcCeeEEecccHHHHHhcCCccCccceeccCCCCCHHHHHHH---HHH-HHHHHhhcCCCCCHHHHHHHHHH
Q psy992 11 VASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEA---LCL-GLRLYLVHDDLTSLPAARRKWQK 86 (106)
Q Consensus 11 ~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~---~~~-Gir~yllke~~~~l~~ar~~~~~ 86 (106)
...+..||.+ ++....|+.+|- -+.+||++|.-+ +.. -=.+-+++|-.+-+|+.-+-..|
T Consensus 20 l~~IGGfFMF----------RKFLK~lPKeDG------kS~LDWq~~yi~~trhlW~de~K~lL~eLV~PVPelFRdvAk 83 (141)
T PF11084_consen 20 LMAIGGFFMF----------RKFLKRLPKEDG------KSILDWQEYYIEKTRHLWTDEQKALLEELVSPVPELFRDVAK 83 (141)
T ss_pred HHHHhHHHHH----------HHHHHhCCcccC------cccccHHHHHHHHhHhhcCHHHHHHHHHHhhcCcHHHHHHHH
Confidence 4556667664 478899999997 468999998755 222 23456778878889999888888
Q ss_pred HHHHHHHHHHHH
Q psy992 87 LYIAHCILRAVA 98 (106)
Q Consensus 87 l~~~~~~~~~~~ 98 (106)
-.++..+-++++
T Consensus 84 ~kIAgkIgelAl 95 (141)
T PF11084_consen 84 HKIAGKIGELAL 95 (141)
T ss_pred HHHHHHHHHHHH
Confidence 888888776553
No 10
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=77.19 E-value=7.6 Score=21.62 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy992 73 DLTSLPAARRKWQKLYIAH 91 (106)
Q Consensus 73 ~~~~l~~ar~~~~~l~~~~ 91 (106)
..|..|+||+.++-+++--
T Consensus 17 tiev~~qa~qnlqelfvnf 35 (52)
T PF04272_consen 17 TIEVPQQARQNLQELFVNF 35 (52)
T ss_dssp TSSSCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH
Confidence 4677899999999887654
No 11
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=70.42 E-value=13 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy992 73 DLTSLPAARRKWQKLYIAHC 92 (106)
Q Consensus 73 ~~~~l~~ar~~~~~l~~~~~ 92 (106)
..|..|+||++++-+++--.
T Consensus 17 ~ie~~~qar~~lq~lfvnf~ 36 (52)
T TIGR01294 17 TIEMPQQARQNLQNLFINFC 36 (52)
T ss_pred hccCCHHHHHHHHHHHHHHH
Confidence 35678999999998876543
No 12
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=53.72 E-value=14 Score=26.53 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy992 51 QLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQKL 87 (106)
Q Consensus 51 ~idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~~l 87 (106)
.-+-.+|...|+.|++++|-||+..-.|-|++-+-.-
T Consensus 115 ~~~~i~~A~~y~~likrHIdkEdnvlfp~a~~~~s~e 151 (189)
T COG3945 115 KDDVIDYAVAYLNLIKRHIDKEDNVLFPFAESTLSEE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4456789999999999999999999999998877654
No 13
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=46.35 E-value=9.3 Score=24.62 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.7
Q ss_pred cceeccCCCCCHHHHH
Q psy992 43 EMFFFDMGQLDWEYHA 58 (106)
Q Consensus 43 ~~F~fD~~~idW~~Y~ 58 (106)
+.|+.|++.+||..|+
T Consensus 53 ~~F~Vd~~~f~~~~YF 68 (111)
T PF07377_consen 53 ERFNVDLSDFDFDRYF 68 (111)
T ss_pred HHhCCCcCccCHHHcc
Confidence 3689999999999999
No 14
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=34.92 E-value=93 Score=18.28 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy992 76 SLPAARRKWQKLYIAHCILRAVAV 99 (106)
Q Consensus 76 ~l~~ar~~~~~l~~~~~~~~~~~~ 99 (106)
.+++-|++.+...++-+++.+++.
T Consensus 32 il~ker~R~r~~~~~~~li~aLi~ 55 (64)
T COG4068 32 ILNKERKRQRNFMILMFLILALIL 55 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888877776655543
No 15
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.36 E-value=17 Score=22.03 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=21.5
Q ss_pred cccHHHHHhcCCccCccceeccCCCCC--HHHHHHH
Q psy992 27 NENVQALWDQLSPEDQEMFFFDMGQLD--WEYHAEA 60 (106)
Q Consensus 27 ~~n~~~L~~~ls~~D~~~F~fD~~~id--W~~Y~~~ 60 (106)
+++...+.+-| +++..|.++++..| |++|.+.
T Consensus 38 t~Df~~is~YL--E~~a~f~~~m~~FDeiwe~Yle~ 71 (74)
T COG4479 38 TDDFHEISDYL--ETNADFLFNMSVFDEIWEEYLEH 71 (74)
T ss_pred CccHHHHHHHH--HhcCCcccchhhHHHHHHHHHHH
Confidence 34444444443 35667889999988 9999864
No 16
>PF06889 DUF1266: Protein of unknown function (DUF1266); InterPro: IPR009677 This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.
Probab=32.48 E-value=1.1e+02 Score=20.29 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCC
Q psy992 53 DWEYHAEALCLGLRLYLVHDDLT 75 (106)
Q Consensus 53 dW~~Y~~~~~~Gir~yllke~~~ 75 (106)
+|++|...|+.|-.-..-..+..
T Consensus 123 sWee~~~sy~~G~~~w~~~~~~~ 145 (172)
T PF06889_consen 123 SWEEYAASYLLGRAYWSGEDDDD 145 (172)
T ss_pred CHHHHHHHHHHHHHHHcCCCccc
Confidence 79999999999987776554443
No 17
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.75 E-value=1.1e+02 Score=17.67 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy992 77 LPAARRKWQKLYIAHCIL 94 (106)
Q Consensus 77 l~~ar~~~~~l~~~~~~~ 94 (106)
..+.+++.++..++-.++
T Consensus 28 ~~k~qk~~~~~~~i~~~~ 45 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGI 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666665444
No 18
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=28.45 E-value=28 Score=19.23 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.1
Q ss_pred cCcc-ceeccCCCCCHHHHHHHH
Q psy992 40 EDQE-MFFFDMGQLDWEYHAEAL 61 (106)
Q Consensus 40 ~D~~-~F~fD~~~idW~~Y~~~~ 61 (106)
+|.. =||+...+-.|.+|+...
T Consensus 18 aDisDyFNYGf~E~tW~~Y~~kq 40 (45)
T PF05182_consen 18 ADISDYFNYGFNEETWREYCKKQ 40 (45)
T ss_pred CChhhhcCCCCCHHHHHHHHHHH
Confidence 3443 489999999999998764
No 19
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=27.92 E-value=27 Score=22.42 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=22.0
Q ss_pred EecccHHHHHhcCCccCccceeccCCCCCHHHHH
Q psy992 25 WSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHA 58 (106)
Q Consensus 25 F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~ 58 (106)
|...|+.++++.++|++|+.- ++++=|+.-.
T Consensus 37 FG~sni~k~L~~~~~~~R~~a---~~Sl~yEA~~ 67 (101)
T PF03195_consen 37 FGVSNISKMLQELPPEQREDA---MRSLVYEANA 67 (101)
T ss_pred HchhHHHHHHHhCCccchhhH---HHHHHHHHHh
Confidence 678999999999999988432 3444454433
No 20
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=27.24 E-value=8.7 Score=25.55 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=44.6
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy992 43 EMFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQKLYIAHCILRAVAVFVLFRIL 106 (106)
Q Consensus 43 ~~F~fD~~~idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~~l~~~~~~~~~~~~~~~~~~~ 106 (106)
..||++++.-|..--=..|.+=|+=++-|-+..++.---+-.+-+++++.++-++++++..|++
T Consensus 38 ShFNW~v~g~NYhILRTGCfPfiKYHCtkrp~qdL~~ed~ff~~iKv~NlGiP~L~YGl~a~~l 101 (126)
T PF15031_consen 38 SHFNWTVDGSNYHILRTGCFPFIKYHCTKRPPQDLSFEDRFFTAIKVINLGIPCLAYGLAAWFL 101 (126)
T ss_pred cccCcccCCceEEEEeecCccceeeeecCCChhhcchHHHHHHHHHHHhcCchHHHHHHHHhhe
Confidence 3566666655542211225555555677778888888888889999999999999998877653
No 21
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=22.61 E-value=94 Score=20.25 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=25.4
Q ss_pred CeeEEecccH----HHHHhcCCccCccceeccC-CCCCHHHHHHH
Q psy992 21 RKWNWSNENV----QALWDQLSPEDQEMFFFDM-GQLDWEYHAEA 60 (106)
Q Consensus 21 ~eW~F~~~n~----~~L~~~ls~~D~~~F~fD~-~~idW~~Y~~~ 60 (106)
++|.|-.++. ..+.+.|++-.--.+.+.+ .+-+|+.|+.-
T Consensus 90 r~~~fY~~d~~~~~~~l~~~l~~~~~y~~~~~~~~Dp~W~~Y~~f 134 (136)
T PF05117_consen 90 REFYFYCKDPEKFEEVLNEALAQFPEYPIEINVQEDPDWDFYFDF 134 (136)
T ss_pred EEEEEEECChhHHHHHHHHHHHhCCCcceEEEEEECcCHHHHHHh
Confidence 6788999888 5566666654222333333 56779999863
No 22
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=21.91 E-value=27 Score=16.26 Aligned_cols=10 Identities=10% Similarity=0.531 Sum_probs=7.0
Q ss_pred ccCCCCCHHH
Q psy992 47 FDMGQLDWEY 56 (106)
Q Consensus 47 fD~~~idW~~ 56 (106)
+|++.|||=+
T Consensus 1 MeikCiNWFE 10 (22)
T PF08452_consen 1 MEIKCINWFE 10 (22)
T ss_pred CccEEeehhh
Confidence 4678888844
No 23
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=20.73 E-value=1e+02 Score=18.90 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q psy992 61 LCLGLRLYLVHDDLTSLPAARRKWQKLYIAH 91 (106)
Q Consensus 61 ~~~Gir~yllke~~~~l~~ar~~~~~l~~~~ 91 (106)
.+.|.|.+|++|...-.-.|-+.+.+.+-+.
T Consensus 45 vv~g~Rn~lirEt~k~sil~Eql~EKik~lw 75 (82)
T PF05418_consen 45 VVVGTRNFLIRETSKLSILAEQLVEKIKSLW 75 (82)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999998755555555555554443
Done!