Query psy992
Match_columns 106
No_of_seqs 122 out of 593
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjk_A Cardiac phospholamban; 83.7 2.7 9.1E-05 22.6 4.4 19 73-91 17-35 (52)
2 2eo2_A Adult MALE hypothalamus 49.6 2.3 7.7E-05 25.0 -0.8 20 35-54 48-70 (71)
3 1yod_A Water-solublized phosph 29.8 52 0.0018 15.7 3.6 15 78-92 1-15 (30)
4 1jr5_A 10 kDa anti-sigma facto 17.4 42 0.0014 20.4 0.8 51 8-59 33-85 (90)
5 3anw_B GINS23, putative unchar 17.4 42 0.0014 22.7 0.9 18 29-46 141-158 (171)
6 2xqo_A Cellulosome enzyme, doc 16.9 1.6E+02 0.0054 20.4 3.7 68 14-85 112-185 (243)
7 3l91_A Acyl-homoserine lactone 13.0 80 0.0028 21.0 1.4 29 29-70 88-116 (170)
8 4fu3_A Regulation of nuclear P 12.3 44 0.0015 20.7 -0.1 65 25-95 4-68 (135)
9 2dof_A Transcription elongatio 11.8 1.8E+02 0.0061 17.3 2.5 18 69-86 30-47 (85)
10 1ug7_A 2610208M17RIK protein; 11.8 1.4E+02 0.0048 19.2 2.2 23 29-52 100-122 (128)
No 1
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=83.65 E-value=2.7 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy992 73 DLTSLPAARRKWQKLYIAH 91 (106)
Q Consensus 73 ~~~~l~~ar~~~~~l~~~~ 91 (106)
..|..|+||+.++-+++--
T Consensus 17 ~ie~~~qarqnlqelfvnf 35 (52)
T 1fjk_A 17 TIEMPQQARQNLQNLFINF 35 (52)
T ss_dssp SSSSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH
Confidence 5678999999999987654
No 2
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.57 E-value=2.3 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=16.4
Q ss_pred hcCCccCccce---eccCCCCCH
Q psy992 35 DQLSPEDQEMF---FFDMGQLDW 54 (106)
Q Consensus 35 ~~ls~~D~~~F---~fD~~~idW 54 (106)
+.|+|+|...| +.|+++|-|
T Consensus 48 ~~LT~eEi~~FaRLdIDP~TITw 70 (71)
T 2eo2_A 48 STLTEEEVRKFARLNIDPATITW 70 (71)
T ss_dssp TTCCHHHHHHHHHTCCCSTTCCC
T ss_pred ccCCHHHHhhceecccCccceee
Confidence 56788888776 789999988
No 3
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=29.78 E-value=52 Score=15.68 Aligned_cols=15 Identities=47% Similarity=0.875 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy992 78 PAARRKWQKLYIAHC 92 (106)
Q Consensus 78 ~~ar~~~~~l~~~~~ 92 (106)
|+||+.++-+++-..
T Consensus 1 ~qArqNlQ~LfvNfc 15 (30)
T 1yod_A 1 QQARQNLQNLYINRC 15 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 579999998877543
No 4
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=17.43 E-value=42 Score=20.37 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHhhhhhhhcCeeEEecccHHHHHhcCCccCccce--eccCCCCCHHHHHH
Q psy992 8 LGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMF--FFDMGQLDWEYHAE 59 (106)
Q Consensus 8 i~~~~~~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~~~F--~fD~~~idW~~Y~~ 59 (106)
+-.+.+-+++ |.+.=.|...++++|.++|++++|+.. .|+...-+.-.|+.
T Consensus 33 FIaFLNElG~-t~~G~~~t~~sfr~m~~~lt~~ek~elieeFn~G~e~iyr~l~ 85 (90)
T 1jr5_A 33 FIAFLNEIGV-THEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFEGVYRYLE 85 (90)
T ss_dssp HHHHHHHHTC-CSSSSCCCSHHHHHHHHTCCHHHHHHHHTTSSSSSTTTTTHHH
T ss_pred HHHHHHHcCC-CCCcchhHHHHHHHHHHHCCHHHHHHHHHHHhccchHHHHHHH
Confidence 3345555565 666677889999999999999988542 35555554444443
No 5
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=17.38 E-value=42 Score=22.69 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=14.6
Q ss_pred cHHHHHhcCCccCcccee
Q psy992 29 NVQALWDQLSPEDQEMFF 46 (106)
Q Consensus 29 n~~~L~~~ls~~D~~~F~ 46 (106)
|-..+.+.|+|+++..|.
T Consensus 141 ~~~eil~rLTpEEk~iy~ 158 (171)
T 3anw_B 141 NSLELLSRLAPEERRIYL 158 (171)
T ss_dssp CCHHHHTTSCHHHHHHHH
T ss_pred CcHHHHhcCCHHHHHHHH
Confidence 448899999999997763
No 6
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=16.94 E-value=1.6e+02 Score=20.45 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=46.7
Q ss_pred hhhhhhcCeeEEecccHHHHHhcCCccCc-cceeccCCCCCHHHHHHHHHHHHHHHh-----hcCCCCCHHHHHHHHH
Q psy992 14 TLEYFVDRKWNWSNENVQALWDQLSPEDQ-EMFFFDMGQLDWEYHAEALCLGLRLYL-----VHDDLTSLPAARRKWQ 85 (106)
Q Consensus 14 ~l~~Ft~~eW~F~~~n~~~L~~~ls~~D~-~~F~fD~~~idW~~Y~~~~~~Gir~yl-----lke~~~~l~~ar~~~~ 85 (106)
++.+|-+-+=-|.|.|- +-|++.+- ++|.+|..+-|.-+-....-.|||+.+ .||...--+-+|.-+.
T Consensus 112 AyGplQTAeTAfan~np----~fMpE~nVPEM~QydftEsNFYDvgIS~HMGIRk~lHFa~~akekysG~dv~R~sl~ 185 (243)
T 2xqo_A 112 AFGPLQTAETAYANANP----NYMPEHNVPEMHQYDFTEYNFYDVGISVHMGIRHFLHFARLAKEKYSGRDIARHGLM 185 (243)
T ss_dssp EETTTTEEGGGSBTSCT----TSCCCCSCTTSCCCBCCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHH
T ss_pred cccchHHHHHHHhhcCc----ccCcccCchhhheeccccccceeeeehhhhhHHHHHHHHHHHHhhcchHHHHHHhhh
Confidence 34455555555555553 35777666 788999988887777777778999995 4677766666766655
No 7
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=13.00 E-value=80 Score=21.01 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=20.9
Q ss_pred cHHHHHhcCCccCccceeccCCCCCHHHHHHHHHHHHHHHhh
Q psy992 29 NVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLV 70 (106)
Q Consensus 29 n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Gir~yll 70 (106)
..++.++.++|+.| +.++.|+.|+..|+-
T Consensus 88 ~a~~~~~~l~~~~r-------------~~l~aYa~GvNayl~ 116 (170)
T 3l91_A 88 ALQAFWQAQTPAVR-------------QLLEGYAAGFNRFLR 116 (170)
T ss_dssp HHHHHHHTSCHHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHH-------------HHHHHHHHHHHHHHh
Confidence 34555566665543 688999999999993
No 8
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=12.25 E-value=44 Score=20.74 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=36.1
Q ss_pred EecccHHHHHhcCCccCccceeccCCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy992 25 WSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQKLYIAHCILR 95 (106)
Q Consensus 25 F~~~n~~~L~~~ls~~D~~~F~fD~~~idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~~l~~~~~~~~ 95 (106)
|+.+.+.+.++.|++....+=..-.=.++-..+-...+..+.+++.+.+++ +++..||+++-+++
T Consensus 4 f~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~------~KL~~LYLindIl~ 68 (135)
T 4fu3_A 4 FSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN------RKLTFLYLANDVIQ 68 (135)
T ss_dssp CCHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT------THHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------hhHHHHHHHHHHHH
Confidence 455666777777775322111000000000124455566777787776663 67889999988765
No 9
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=11.81 E-value=1.8e+02 Score=17.35 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=13.3
Q ss_pred hhcCCCCCHHHHHHHHHH
Q psy992 69 LVHDDLTSLPAARRKWQK 86 (106)
Q Consensus 69 llke~~~~l~~ar~~~~~ 86 (106)
+++++.-+..+|++.+++
T Consensus 30 lIr~pd~sW~Eakr~LrK 47 (85)
T 2dof_A 30 MVRSSDVSWSDTRRTLRK 47 (85)
T ss_dssp HTCCSSCCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHhcc
Confidence 567777788888877763
No 10
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=11.80 E-value=1.4e+02 Score=19.17 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=14.8
Q ss_pred cHHHHHhcCCccCccceeccCCCC
Q psy992 29 NVQALWDQLSPEDQEMFFFDMGQL 52 (106)
Q Consensus 29 n~~~L~~~ls~~D~~~F~fD~~~i 52 (106)
+++..++.+...+ +.||||+..+
T Consensus 100 ~l~~~lk~ll~~~-~eFP~dV~p~ 122 (128)
T 1ug7_A 100 KLEPILKNILTYN-KEFPFDVQPI 122 (128)
T ss_dssp THHHHHHTTTTCC-SCCSSCCCCS
T ss_pred HHHHHHHHhcccC-CCCCCccCcC
Confidence 3455566666433 6699998765
Done!