Query psy992
Match_columns 106
No_of_seqs 122 out of 593
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 23:02:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sxje1 a.80.1.1 (E:256-354) R 37.5 9.9 0.00072 22.0 2.2 33 52-87 2-34 (99)
2 d2clyb1 f.53.1.1 (B:4-123) ATP 31.8 13 0.00097 22.1 2.2 15 46-60 42-56 (120)
3 d2qgma1 c.150.1.3 (A:33-445) S 29.6 24 0.0017 24.8 3.7 60 22-86 105-172 (413)
4 d1oz2a1 b.34.9.3 (A:204-313) L 21.1 23 0.0017 20.4 1.8 10 51-60 2-11 (110)
5 d3b55a1 c.150.1.3 (A:40-442) S 19.7 24 0.0018 24.7 2.0 59 22-85 99-165 (403)
6 d1y6ia2 a.261.1.1 (A:83-233) M 19.3 2.2 0.00016 26.9 -3.5 24 37-60 48-74 (151)
7 d1onqa2 d.19.1.1 (A:7-183) CD1 17.5 34 0.0025 20.9 2.1 18 53-70 151-169 (177)
8 d1z3xa2 a.261.1.1 (A:88-235) G 16.7 2.4 0.00017 26.6 -3.8 24 37-60 48-74 (148)
9 d1zs8a2 d.19.1.1 (A:1-180) Cla 16.2 38 0.0028 20.8 2.1 17 54-70 155-172 (180)
10 d1neza2 d.19.1.1 (A:1-181) Cla 14.7 44 0.0032 20.3 2.1 18 54-71 156-174 (181)
No 1
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.52 E-value=9.9 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy992 52 LDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQKL 87 (106)
Q Consensus 52 idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~~l 87 (106)
-||+.|+.+-+..+-+ ..++.++.+.|.++..|
T Consensus 2 pdWe~~i~~ia~~I~~---eqsp~~L~~iR~~lYeL 34 (99)
T d1sxje1 2 PDWIIVIHKLTRKIVK---ERSVNSLIECRAVLYDL 34 (99)
T ss_dssp CHHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Confidence 4799998877655422 33556777777776655
No 2
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.80 E-value=13 Score=22.07 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=11.6
Q ss_pred eccCCCCCHHHHHHH
Q psy992 46 FFDMGQLDWEYHAEA 60 (106)
Q Consensus 46 ~fD~~~idW~~Y~~~ 60 (106)
+=.+..|||..|=.+
T Consensus 42 pe~pp~IDwa~Yk~~ 56 (120)
T d2clyb1 42 PEKPPAIDWAYYKAN 56 (120)
T ss_dssp CSSCCCCCHHHHHHT
T ss_pred cCCCCCcCHHHHHHh
Confidence 445889999999655
No 3
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]}
Probab=29.56 E-value=24 Score=24.84 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=41.0
Q ss_pred eeEEecccHHHHHhcC-------CccCcc-ceeccCCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy992 22 KWNWSNENVQALWDQL-------SPEDQE-MFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQK 86 (106)
Q Consensus 22 eW~F~~~n~~~L~~~l-------s~~D~~-~F~fD~~~idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~~ 86 (106)
.|.|.|.-+..|.+=| +++++- .+.||+....=. .+..+..|+-+-+++..+.+++.+.-
T Consensus 105 ~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~-----s~~~v~~yl~~~~p~~~~~~~~~~~~ 172 (413)
T d2qgma1 105 KLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQG-----SFNKVIDYVRLHRPDLLAEVEENYKE 172 (413)
T ss_dssp CTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHH-----HHHHHHHHHHHHCTTSHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHHHcccCCCCCceeEEEecccccchh-----hHHHHHHHHHhhChHHHHHHHHHHhc
Confidence 4667788888888855 345553 467999876532 34566677777788888877766543
No 4
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=23 Score=20.36 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=8.6
Q ss_pred CCCHHHHHHH
Q psy992 51 QLDWEYHAEA 60 (106)
Q Consensus 51 ~idW~~Y~~~ 60 (106)
++||++|+..
T Consensus 2 ~F~W~~YL~~ 11 (110)
T d1oz2a1 2 CWSWESYLEE 11 (110)
T ss_dssp CCCHHHHHHH
T ss_pred ccChHHHHHH
Confidence 6799999886
No 5
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]}
Probab=19.73 E-value=24 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=37.0
Q ss_pred eeEEecccHHHHHhcC-------CccCccc-eeccCCCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy992 22 KWNWSNENVQALWDQL-------SPEDQEM-FFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKWQ 85 (106)
Q Consensus 22 eW~F~~~n~~~L~~~l-------s~~D~~~-F~fD~~~idW~~Y~~~~~~Gir~yllke~~~~l~~ar~~~~ 85 (106)
.|.|.|.-+.+|.+=| +++|+-. +.||+....=. ....+..||-+.+++..+.+++...
T Consensus 99 ~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s-----~~~~v~~yl~~~~p~~~~~~~~~~~ 165 (403)
T d3b55a1 99 TPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNEN-----VYNNIIEYIKANNSKLLPRVEEKIK 165 (403)
T ss_dssp CGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHH-----HHHHHHHHHHHHHGGGTHHHHHHHH
T ss_pred HhhhccHHHHHHHHHHHHHhccCCCCCceEEEEecccccchh-----HHHHHHHHHHhhCHHHHHHHHHHHh
Confidence 3566788888888855 4556644 56999866422 1234556666666666666665554
No 6
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=19.31 E-value=2.2 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=18.5
Q ss_pred CCccCccceec-cCCCCC--HHHHHHH
Q psy992 37 LSPEDQEMFFF-DMGQLD--WEYHAEA 60 (106)
Q Consensus 37 ls~~D~~~F~f-D~~~id--W~~Y~~~ 60 (106)
++++|-+.||| |++.|| |..|-..
T Consensus 48 l~~~di~~fPc~DL~~ID~LW~~yS~G 74 (151)
T d1y6ia2 48 LYFTEVEKFPALDLHTINALWWLHSNG 74 (151)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHhcCC
Confidence 56677788888 788888 8887644
No 7
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human (Homo sapiens), CD1a [TaxId: 9606]}
Probab=17.45 E-value=34 Score=20.89 Aligned_cols=18 Identities=6% Similarity=-0.481 Sum_probs=13.8
Q ss_pred CHHHHHHH-HHHHHHHHhh
Q psy992 53 DWEYHAEA-LCLGLRLYLV 70 (106)
Q Consensus 53 dW~~Y~~~-~~~Gir~yll 70 (106)
.|+.|+++ |+..+++||-
T Consensus 151 ~~k~yL~~~Cv~~Lk~yL~ 169 (177)
T d1onqa2 151 ITHNLLSDTCPRFILGLLD 169 (177)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 36668875 8899999974
No 8
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.65 E-value=2.4 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.9
Q ss_pred CCccCccceec-cCCCCC--HHHHHHH
Q psy992 37 LSPEDQEMFFF-DMGQLD--WEYHAEA 60 (106)
Q Consensus 37 ls~~D~~~F~f-D~~~id--W~~Y~~~ 60 (106)
+.++|-+.||| |++.|| |..|-..
T Consensus 48 l~~~di~~fPc~dL~~ID~LW~~yS~G 74 (148)
T d1z3xa2 48 LYFTEVEQLPIPDLQTIDQLWLAFSLG 74 (148)
T ss_dssp CCHHHHHTSCHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHhcCC
Confidence 67778888998 788888 8887654
No 9
>d1zs8a2 d.19.1.1 (A:1-180) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M10 [TaxId: 10090]}
Probab=16.23 E-value=38 Score=20.78 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=13.4
Q ss_pred HHHHHHH-HHHHHHHHhh
Q psy992 54 WEYHAEA-LCLGLRLYLV 70 (106)
Q Consensus 54 W~~Y~~~-~~~Gir~yll 70 (106)
|..|+++ |+..+++||-
T Consensus 155 ~k~yle~~Ci~wLkkyL~ 172 (180)
T d1zs8a2 155 WRTYLKGECTERFLRCLD 172 (180)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred hhchhcCccHHHHHHHHH
Confidence 5668876 8889999984
No 10
>d1neza2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]}
Probab=14.73 E-value=44 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.010 Sum_probs=14.1
Q ss_pred HHHHHHH-HHHHHHHHhhc
Q psy992 54 WEYHAEA-LCLGLRLYLVH 71 (106)
Q Consensus 54 W~~Y~~~-~~~Gir~yllk 71 (106)
+..|++. |+..+++||-+
T Consensus 156 ~k~yl~~~C~~~L~kyL~~ 174 (181)
T d1neza2 156 RRTYLEGPCKDSLLRYLEN 174 (181)
T ss_dssp HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhChhHHHHHHHHHh
Confidence 5678875 99999999843
Done!