RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy992
(106 letters)
>gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases.
C-terminal domain of fatty acyl CoA reductases, a
family of SDR-like proteins. SDRs or short-chain
dehydrogenases/reductases are Rossmann-fold
NAD(P)H-binding proteins. Many proteins in this FAR_C
family may function as fatty acyl-CoA reductases
(FARs), acting on medium and long chain fatty acids,
and have been reported to be involved in diverse
processes such as the biosynthesis of insect
pheromones, plant cuticular wax production, and
mammalian wax biosynthesis. In Arabidopsis thaliana,
proteins with this particular architecture have also
been identified as the MALE STERILITY 2 (MS2) gene
product, which is implicated in male gametogenesis.
Mutations in MS2 inhibit the synthesis of exine
(sporopollenin), rendering plants unable to reduce
pollen wall fatty acids to corresponding alcohols. The
function of this C-terminal domain is unclear.
Length = 92
Score = 80.3 bits (199), Expect = 2e-21
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 1 LSSVYTKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEA 60
L +Y K+ K+ LEYF +W + N+N +ALW++LS ED+E+F FD+ +DW+ + E
Sbjct: 23 LLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDIRSIDWDDYFEN 82
Query: 61 LCLGLRLYL 69
GLR YL
Sbjct: 83 YIPGLRKYL 91
>gnl|CDD|111859 pfam03015, Sterile, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 94
Score = 66.5 bits (163), Expect = 6e-16
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 LSSVYTKLGKVASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEA 60
L +Y K+ K L+ F +W + N+N + L +++S ED+++F FDM LDW+ +
Sbjct: 23 LVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDMESLDWDEYFRN 82
Query: 61 LCLGLRLYLVHD 72
G+R YL+ +
Sbjct: 83 AIRGIRKYLLKE 94
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 36.4 bits (84), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 27 NENVQALWDQLSPEDQEMFFFDMGQLDW-EYHAEALCLGLR 66
N N Q L +++S E++ F FD+G +DW +Y GLR
Sbjct: 557 NSNTQRLMERMSEEEKAEFGFDVGSIDWRDYITNVHIPGLR 597
>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine
pyrophosphorylase.
Length = 493
Score = 34.1 bits (78), Expect = 0.007
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 18 FVDRKWNWSNENVQALWDQLSPEDQEMFFFDMGQLD 53
++R ++ E+ ALWD+LSPE++++ D+ LD
Sbjct: 25 LLERLKDYGQEDAFALWDELSPEERDLLVRDIESLD 60
>gnl|CDD|238330 cd00587, HCP_like, The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved alpha-beta rossman fold
domain. HCP, formerly known as prismane, is thought to
play a role in nitrogen metabolism but its specific
function is unknown. Acetyl-CoA synthase (ACS), is
found in acetogenic and methanogenic organisms and is
responsible for the synthesis and breakdown of
acetyl-CoA. ACS forms a heterotetramer with carbon
monoxide dehydrogenase (CODH) consisting of two ACS and
two CODH subunits. CODH reduces carbon dioxide to carbon
monoxide and ACS then synthesizes acetyl-CoA from carbon
monoxide and CoA.
Length = 258
Score = 26.4 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 47 FDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPA 79
FDMG HA L L L D + LPA
Sbjct: 156 FDMGNCVDNSHAANLALKLANMFGGYDRSDLPA 188
>gnl|CDD|189650 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase
Zn-finger region. Poly(ADP-ribose) polymerase is an
important regulatory component of the cellular response
to DNA damage. The amino-terminal region of
Poly(ADP-ribose) polymerase consists of two PARP-type
zinc fingers. This region acts as a DNA nick sensor.
Length = 81
Score = 24.9 bits (55), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 17 YFVDRKWNWSNENVQAL--WDQLSPEDQEM 44
+ R N + E+V L +++L PEDQE
Sbjct: 46 FTEKRLRNRATEDVDDLDGFEELRPEDQEK 75
>gnl|CDD|188541 TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN-dependent
enzyme, alr4036 family. Members of the PPOX family (see
pfam01243) may contain either FMN or F420 as cofactor.
This subfamily described here is widespread in
Cyanobacteria and plants, and is named for alr4036 from
Nostoc sp. PCC 7120. The family consists mostly of
proteins from species that lack the capability to
synthesize F420, so it is probable that all members bind
FMN rather than F420 [Unknown function, Enzymes of
unknown specificity].
Length = 185
Score = 25.3 bits (56), Expect = 5.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 SNENVQALWDQLSPEDQEMFF 46
E +QA W QLS + +F
Sbjct: 98 DPERLQAHWQQLSDAARSQWF 118
>gnl|CDD|148584 pfam07055, Eno-Rase_FAD_bd, Enoyl reductase FAD binding domain.
This family carries the region of the enzyme
trans-2-enoyl-CoA reductase, at the very C-terminus,
that binds to FAD. The activity was characterized in
Euglena where an unusual fatty acid synthesis path-way
in mitochondria performs a malonyl-CoA independent
synthesis of fatty acids leading to accumulation of wax
esters, which serve as the sink for electrons stemming
from glycolytic ATP synthesis and pyruvate oxidation.
The full enzyme catalyzes the reduction of enoyl-CoA to
acyl-CoA. The conserved region is seen as the motif
FGFxxxxxDY.
Length = 64
Score = 24.1 bits (53), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 30 VQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCL 63
V ALW+Q++ E+ F++ Y AE L L
Sbjct: 23 VAALWEQVTTEN----LFELTDYAG-YKAEFLKL 51
>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease
domain of the epsilon subunit of Escherichia coli DNA
polymerase III and similar proteins. This subfamily is
composed of the epsilon subunit of Escherichia coli DNA
polymerase III (Pol III) and similar proteins. Pol III
is the main DNA replicating enzyme in bacteria,
functioning as the chromosomal replicase. It is a
holoenzyme complex of ten different subunits, three of
which (alpha, epsilon, and theta) compose the catalytic
core. The Pol III epsilon subunit, encoded by the dnaQ
gene, is a DEDDh-type 3'-5' exonuclease which is
responsible for the proofreading activity of the
polymerase, increasing the fidelity of DNA synthesis. It
contains three conserved sequence motifs termed ExoI,
ExoII and ExoIII, with a specific Hx(4)D conserved
pattern at ExoIII. These motifs are clustered around the
active site and contain four conserved acidic residues
that serve as ligands for the two metal ions required
for catalysis. The epsilon subunit of Pol III also
functions as a stabilizer of the holoenzyme complex.
Length = 167
Score = 24.8 bits (55), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 47 FDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRKW 84
FD+G L+ E L LG ++ + +L AR+K+
Sbjct: 91 FDVGFLNAEL--SLLGLGKKIIDFCRVIDTLALARKKF 126
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional.
Length = 364
Score = 25.0 bits (54), Expect = 10.0
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 58 AEALCLGLRLYLV----HDDLTSLPAARRKW 84
+ GL++Y+V D L LPA R W
Sbjct: 5 DDPGVAGLQVYIVGGAVRDALLGLPAGDRDW 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.454
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,549,700
Number of extensions: 470464
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 24
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)