RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy992
(106 letters)
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1;
nucleotidyltransferase, alternative splicing; HET: UD1;
1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A*
1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 30.5 bits (68), Expect = 0.077
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 28 ENVQALWDQLSPEDQEMFFFDMGQLDWEY 56
E++ W++L Q + ++ +++E
Sbjct: 16 EHLLRFWNELEEAQQVELYAELQAMNFEE 44
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-
acetylglucosamine, N-acetylglucosamine-1-phosphate,
transferase; 1.90A {Candida albicans} PDB: 2yqh_A*
2yqj_A* 2yqs_A*
Length = 486
Score = 28.2 bits (62), Expect = 0.46
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 28 ENVQALWDQLSPEDQEMFFFDMGQLDW 54
+ + +D L+ + Q+ F + ++
Sbjct: 19 DQLFQYYDSLTIDQQQEFIDQLSTIEE 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 31/111 (27%)
Query: 5 YTKLGKVASTLEYFVD-------RKWNWS----NENV-------QALWDQLSPEDQEMFF 46
+ K+ + +E ++ RK + +W + D +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV- 407
Query: 47 FDMGQLDWEYHAEALCLG------LRLYLVHDDLTSLPAARRKWQKLYIAH 91
+ +L H +L + + ++ +L + + H
Sbjct: 408 --VNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 26.2 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 63 LGLRLYLVHDDLTSLPAARRKWQKLY 88
LG +Y+ DD+T + K +KL
Sbjct: 45 LGREIYIKRDDVTPIAMGGNKLRKLE 70
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction,
syphilis, lipoprotein, transport protein; HET: EDO;
1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Length = 328
Score = 25.8 bits (57), Expect = 2.9
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 1 LSSVYT-KLGKVASTLEYFVDRKWNWSNENV---QALWDQLSPEDQEMF 45
+ + S Y +D K + + W ++ +
Sbjct: 203 HLFTWATGFYRYIS---YALDTKICPAVIGMLISDGSWARIPSRYHDAM 248
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 25.7 bits (57), Expect = 3.0
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 31/79 (39%)
Query: 39 PEDQEMF------FFDMGQLDWEYHAE-----------------ALCLGLRLYLVHDDLT 75
E+ +M +MG E H A + +Y+VH +
Sbjct: 192 AENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVH--VQ 249
Query: 76 S------LPAARRKWQKLY 88
S + R++ ++Y
Sbjct: 250 SIGAADVICKHRKEGVRVY 268
>2ws9_2 P1; 3.00A {Equine rhinitis a virus} PDB: 2xbo_2* 2wff_2
Length = 230
Score = 25.3 bits (55), Expect = 3.8
Identities = 2/37 (5%), Positives = 9/37 (24%)
Query: 21 RKWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYH 57
W ++ + + + + W+
Sbjct: 75 HGHAWICPLPSDKLKKMGSFHEVVKAHHLVKNGWDVV 111
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 25.3 bits (55), Expect = 3.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 23 WNWSNENVQALWDQLSPEDQEMFF 46
WNW ++ L D E +
Sbjct: 180 WNWPESWLKESMQSLCSSDIEGLY 203
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate
binding protein, selectivity helix, TR membrane; HET:
4CS; 2.90A {Silicibacter pomeroyi dss-3}
Length = 326
Score = 25.4 bits (56), Expect = 4.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 31 QALWDQLSPEDQEMF 45
+ +D LS EDQ++
Sbjct: 231 KDFYDGLSAEDQQLV 245
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann
fold, UDP sugar pyrophospho transferase; 2.03A
{Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A*
3oh4_A*
Length = 630
Score = 25.3 bits (54), Expect = 4.9
Identities = 5/31 (16%), Positives = 7/31 (22%), Gaps = 3/31 (9%)
Query: 32 ALWDQLSPEDQE---MFFFDMGQLDWEYHAE 59
W + E E D+ Y
Sbjct: 28 EGWPETVDECNERQIALLTDLYMFSNMYPGG 58
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine,
trap-transporter, periplasmic binding protein,
transport; HET: 4CS; 1.55A {Halomonas elongata} PDB:
2vpo_A* 3gyy_A
Length = 316
Score = 24.9 bits (55), Expect = 5.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 31 QALWDQLSPEDQEMF 45
Q ++ LS EDQ++
Sbjct: 217 QDFYEGLSEEDQQLV 231
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 24.9 bits (54), Expect = 5.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 23 WNWSNENVQALWDQLSPEDQEMF 45
W+W +++A L D
Sbjct: 179 WDWPLADIEAAMPLLCTGDIPAL 201
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 25.3 bits (56), Expect = 5.5
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 21/64 (32%)
Query: 46 FFDMGQLDWEYHAE-----------------ALCLGLRLYLVH----DDLTSLPAARRKW 84
G E HA A G +Y+VH ++ AR K
Sbjct: 194 LLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCEQAHEAIRRARAKG 253
Query: 85 QKLY 88
+++
Sbjct: 254 MRVF 257
>2pfy_A Putative exported protein; extracytoplasmic solute receptor,
tripartite ATP independent periplasmic transport,
pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Length = 301
Score = 25.0 bits (55), Expect = 6.5
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 1 LSSVYT-KLGKVASTLEYFVDRKWNWSNENV---QALWDQLSPEDQEMF 45
++ + Y+ D + V + + +L E ++
Sbjct: 184 PATGVDSQAWDYVK---YYYDAQAFIPQSFVIANKRAFQRLPAEVRQAV 229
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein,
trap, sugar transport; HET: SLB; 1.05A {Haemophilus
influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A*
2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Length = 312
Score = 24.9 bits (55), Expect = 6.6
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 31 QALWDQLSPEDQEMF 45
+ +L + Q++
Sbjct: 220 NETYKELPEDLQKVV 234
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix
domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB:
1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Length = 209
Score = 24.8 bits (54), Expect = 6.7
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 23 WNWSNENVQALWDQLSPEDQEMFFFD 48
WNW + + D++
Sbjct: 182 WNWPIDIINENIDKILDNSIIREVIW 207
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 24.8 bits (55), Expect = 6.8
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 31/78 (39%)
Query: 40 EDQEMF------FFDMGQLDWEYHAE-----------------ALCLGLRLYLVHDDLTS 76
E+ + F G+ YHA A + +Y+VH +T
Sbjct: 183 ENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVH--VTC 240
Query: 77 ------LPAARRKWQKLY 88
+ A+ + +
Sbjct: 241 EESLEEVMRAKSRGVRAL 258
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 24.5 bits (54), Expect = 8.7
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 49 MGQLDWEYHAEALCLGL--RLYLV----HDDLT-SLPAARRKWQKL 87
+ +W+ + L + L R + + LPA W +
Sbjct: 587 LSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPAGE--WHAI 630
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent,
lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP:
c.79.1.1 PDB: 1j0b_A*
Length = 325
Score = 24.6 bits (53), Expect = 8.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 63 LGLRLYLVHDDLTSLPAARRKWQKL 87
+G +Y+ DDLT L K +KL
Sbjct: 34 IGADVYIKRDDLTGLGIGGNKIRKL 58
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic
binding protein, thermophilic proteins, trap- transport;
HET: MSE; 1.90A {Thermotoga maritima}
Length = 327
Score = 24.2 bits (53), Expect = 9.1
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 31 QALWDQLSPEDQEMF 45
++ L E Q++
Sbjct: 235 ADWFNSLPKEYQKII 249
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); 2.70A {Staphylococcus aureus}
Length = 219
Score = 24.5 bits (53), Expect = 9.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 23 WNWSNENVQALWDQLSPEDQEMF 45
WN + + + D EM
Sbjct: 187 WNLDMKIINENLPFIINGDIEML 209
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 24.5 bits (53), Expect = 9.7
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 66 RLYLVHDDLTSLPAARRKWQKLYIAHCILRAV 97
+ ++ LT LP + L + + L +
Sbjct: 144 YINADNNQLTMLPELPTSLEVLSVRNNQLTFL 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.454
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,742,674
Number of extensions: 92011
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 35
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)